Warning: Permanently added '2620:52:6:1161:dead:beef:cafe:c155' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11091377-fedora-45-x86_64 --chroot fedora-45-x86_64


Version: 1.10
PID: 4923
Logging PID: 4925
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 11091377,
 'buildroot_pkgs': [],
 'chroot': 'fedora-45-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '955b320b08034da9a89f4375c9687590970a879c',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/cat-surface',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'cat-surface',
 'package_version': '1.0.30-1',
 'project_dirname': 'neurofedora',
 'project_name': 'neurofedora',
 'project_owner': 'mhough',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-45-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None,
            'repo_gpgcheck': False}],
 'sandbox': 'mhough/neurofedora--mhough',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'mhough',
 'tags': [],
 'task_id': '11091377-fedora-45-x86_64',
 'timeout': 86400,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/cat-surface /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/cat-surface', '/var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface'...

Running: git checkout 955b320b08034da9a89f4375c9687590970a879c --

cmd: ['git', 'checkout', '955b320b08034da9a89f4375c9687590970a879c', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface
rc: 0
stdout: 
stderr: Note: switching to '955b320b08034da9a89f4375c9687590970a879c'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 955b320 automatic import of cat-surface

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading CAT-Surface-1.0.30.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o CAT-Surface-1.0.30.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/cat-surface/CAT-Surface-1.0.30.tar.gz/md5/7650f45dbe4c1fb1ce1ec6d7da40adfd/CAT-Surface-1.0.30.tar.gz
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100  6.08M 100  6.08M   0      0 30.03M      0                              0
INFO: Reading stdout from command: md5sum CAT-Surface-1.0.30.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface/cat-surface.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791418617.110913 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface/cat-surface.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791418617.110913 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface/cat-surface.spec)  Config(fedora-45-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.9
INFO: Mock Version: 6.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-45-x86_64-bootstrap-1791418617.110913/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:45
INFO: Pulling image: registry.fedoraproject.org/fedora:45
INFO: Tagging container image as mock-bootstrap-5341c101-13f2-4089-82df-040ce0d4bbf6
INFO: Checking that 1a03472733ea151d439e903cdb57e3a156fb5544dc65890e205bab39b05ce951 image matches host's architecture
INFO: Copy content of container 1a03472733ea151d439e903cdb57e3a156fb5544dc65890e205bab39b05ce951 to /var/lib/mock/fedora-45-x86_64-bootstrap-1791418617.110913/root
INFO: mounting 1a03472733ea151d439e903cdb57e3a156fb5544dc65890e205bab39b05ce951 with podman image mount
INFO: image 1a03472733ea151d439e903cdb57e3a156fb5544dc65890e205bab39b05ce951 as /var/lib/containers/storage/overlay/917156880b01b2fc69869f945a7fa017c8ac349524c5f3fdc424a8db80825dcf/merged
INFO: umounting image 1a03472733ea151d439e903cdb57e3a156fb5544dc65890e205bab39b05ce951 (/var/lib/containers/storage/overlay/917156880b01b2fc69869f945a7fa017c8ac349524c5f3fdc424a8db80825dcf/merged) with podman image umount
INFO: Removing image mock-bootstrap-5341c101-13f2-4089-82df-040ce0d4bbf6
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-45-x86_64-1791418617.110913/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc45.x86_64
  rpm-sequoia-1.10.3-1.fc45.x86_64
  dnf5-5.4.6.0-3.fc45.x86_64
  dnf5-plugins-5.4.6.0-3.fc45.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 updates                                100% | 217.5 KiB/s |  52.0 KiB |  00m00s
 fedora                                 100% |  29.6 MiB/s |  36.6 MiB |  00m01s
 Copr repository                        100% | 613.9 KiB/s | 681.4 KiB |  00m01s
Repositories loaded.
Package                            Arch   Version                      Repository      Size
Installing group/module packages:
 bash                              x86_64 0:5.3.15-2.fc45              fedora       8.5 MiB
 bzip2                             x86_64 0:1.0.8-24.fc45              fedora      95.0 KiB
 coreutils                         x86_64 0:9.11-6.fc45                fedora       5.9 MiB
 cpio                              x86_64 0:2.15-10.fc45               fedora       1.1 MiB
 diffutils                         x86_64 0:3.12-6.fc45                fedora       1.6 MiB
 fedora-release-common             noarch 0:45-0.10                    fedora       4.2 KiB
 findutils                         x86_64 1:4.11.0-2.fc45              fedora       1.9 MiB
 gawk                              x86_64 0:5.4.1-1.fc45               fedora       2.2 MiB
 glibc-minimal-langpack            x86_64 0:2.44-1.fc45                fedora       0.0   B
 grep                              x86_64 0:3.12-4.fc45                fedora       1.0 MiB
 gzip                              x86_64 0:1.14-4.fc45                fedora     401.6 KiB
 info                              x86_64 0:7.3-3.fc45                 fedora     372.4 KiB
 patch                             x86_64 0:2.8-6.fc45                 fedora     226.6 KiB
 redhat-rpm-config                 noarch 0:345-4.fc45                 fedora     184.2 KiB
 rpm-build                         x86_64 0:6.1.0-1.fc45               fedora     312.2 KiB
 sed                               x86_64 0:4.10-2.fc45                fedora     866.5 KiB
 shadow-utils                      x86_64 2:4.20.0-1.fc45              fedora       3.9 MiB
 tar                               x86_64 2:1.35-10.fc45               fedora       3.0 MiB
 unzip                             x86_64 0:6.0-71.fc45                fedora     441.8 KiB
 util-linux                        x86_64 0:2.42.4-1.fc45              fedora       3.7 MiB
 which                             x86_64 0:2.25-2.fc45                fedora      83.6 KiB
 xz                                x86_64 1:5.8.3-2.fc45               fedora       1.4 MiB
Installing dependencies:
 R-srpm-macros                     noarch 0:1.3.7-3.fc45               fedora       3.5 KiB
 add-determinism                   x86_64 0:0.7.3-3.fc45               fedora       2.2 MiB
 alternatives                      x86_64 0:1.33-6.fc45                fedora      62.1 KiB
 ansible-srpm-macros               noarch 0:1-22.fc45                  fedora      35.7 KiB
 audit-libs                        x86_64 0:4.2.1-2.fc45               fedora     390.5 KiB
 binutils                          x86_64 0:2.47-1.fc45                fedora      28.4 MiB
 build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45               fedora       1.2 KiB
 bzip2-libs                        x86_64 0:1.0.8-24.fc45              fedora      80.5 KiB
 ca-certificates                   noarch 0:2026.2.90_v9.0.317-1.fc45  fedora       2.6 MiB
 cmake-srpm-macros                 noarch 0:4.3.0-5.fc45               fedora     524.0   B
 coreutils-common                  x86_64 0:9.11-6.fc45                fedora      10.9 MiB
 crypto-policies                   noarch 0:20260713-2.gitc42da77.fc45 fedora     134.3 KiB
 curl                              x86_64 0:8.21.0-6.fc45              fedora     487.9 KiB
 cyrus-sasl-lib                    x86_64 0:2.1.28-37.fc45             fedora       2.3 MiB
 debugedit                         x86_64 0:5.3-3.fc45                 fedora     220.8 KiB
 dwz                               x86_64 0:0.17-3.fc45                fedora     291.1 KiB
 ed                                x86_64 0:1.22.6-1.fc45              fedora     150.9 KiB
 efi-srpm-macros                   noarch 0:6-9.fc45                   fedora      40.3 KiB
 elfutils                          x86_64 0:0.196-1.fc45               fedora       3.1 MiB
 elfutils-debuginfod-client        x86_64 0:0.196-1.fc45               fedora      79.9 KiB
 elfutils-libelf                   x86_64 0:0.196-1.fc45               fedora       1.4 MiB
 elfutils-libs                     x86_64 0:0.196-1.fc45               fedora     719.6 KiB
 erlang-srpm-macros                noarch 0:0.3.11-2.fc45              fedora       1.9 KiB
 fedora-gpg-keys                   noarch 0:45-0.6                     fedora     130.3 KiB
 fedora-release                    noarch 0:45-0.10                    fedora       0.0   B
 fedora-release-identity-basic     noarch 0:45-0.10                    fedora     656.0   B
 fedora-repos                      noarch 0:45-0.6                     fedora       4.9 KiB
 file                              x86_64 0:5.48-3.fc45                fedora     101.9 KiB
 file-libs                         x86_64 0:5.48-3.fc45                fedora      12.3 MiB
 filesystem                        x86_64 0:3.18-59.fc45               fedora     112.0   B
 filesystem-srpm-macros            noarch 0:3.18-59.fc45               fedora      38.2 KiB
 fips-provider                     x86_64 0:1.5.2-3.fc45               fedora       4.8 MiB
 fonts-srpm-macros                 noarch 1:5.0.0-4.fc45               fedora      55.8 KiB
 forge-srpm-macros                 noarch 0:0.4.0-5.fc45               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 0:1.3-17.fc45                fedora     144.0   B
 gap-srpm-macros                   noarch 0:2-3.fc45                   fedora       2.1 KiB
 gdb-minimal                       x86_64 0:17.2-6.fc45                fedora      14.2 MiB
 gdbm-libs                         x86_64 1:1.23-12.fc45               fedora     133.7 KiB
 ghc-srpm-macros                   noarch 0:1.10-2.fc45                fedora     792.0   B
 glibc                             x86_64 0:2.44-1.fc45                fedora       7.1 MiB
 glibc-common                      x86_64 0:2.44-1.fc45                fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 0:2.44-1.fc45                fedora       7.7 MiB
 gmp                               x86_64 1:6.3.0-6.fc45               fedora     815.2 KiB
 gnat-srpm-macros                  noarch 0:7-3.fc45                   fedora       1.0 KiB
 gnome-srpm-macros                 noarch 0:1.0-2.fc45                 fedora       3.5 KiB
 gnulib-l10n                       noarch 0:20241231-4.fc45            fedora     655.0 KiB
 gnupg2                            x86_64 0:2.4.9-18.fc45              fedora       6.5 MiB
 gnupg2-dirmngr                    x86_64 0:2.4.9-18.fc45              fedora     630.1 KiB
 gnupg2-gpg-agent                  x86_64 0:2.4.9-18.fc45              fedora     678.8 KiB
 gnupg2-gpgconf                    x86_64 0:2.4.9-18.fc45              fedora     253.8 KiB
 gnupg2-keyboxd                    x86_64 0:2.4.9-18.fc45              fedora     201.3 KiB
 gnupg2-verify                     x86_64 0:2.4.9-18.fc45              fedora     356.3 KiB
 gnutls                            x86_64 0:3.8.13-3.fc45              fedora       3.8 MiB
 go-srpm-macros                    noarch 0:3.8.0-3.fc45               fedora      61.9 KiB
 gpgverify                         noarch 0:2.2-5.fc45                 fedora       8.7 KiB
 ima-evm-utils-libs                x86_64 0:1.6.2-12.fc45              fedora      56.6 KiB
 jansson                           x86_64 0:2.14-5.fc45                fedora      89.0 KiB
 java-srpm-macros                  noarch 0:1-9.fc45                   fedora     870.0   B
 json-c                            x86_64 0:0.18-9.fc45                fedora      82.7 KiB
 kernel-srpm-macros                noarch 0:1.0-30.fc45                fedora       1.9 KiB
 keyutils-libs                     x86_64 0:1.6.3-8.fc45               fedora      54.2 KiB
 krb5-libs                         x86_64 0:1.22.2-9.fc45              fedora       2.4 MiB
 libacl                            x86_64 0:2.4.0-2.fc45               fedora      43.9 KiB
 libarchive                        x86_64 0:3.8.9-2.fc45               fedora       1.0 MiB
 libassuan                         x86_64 0:2.5.7-6.fc45               fedora     163.9 KiB
 libattr                           x86_64 0:2.6.0-2.fc45               fedora      24.3 KiB
 libblkid                          x86_64 0:2.42.4-1.fc45              fedora     282.3 KiB
 libbrotli                         x86_64 0:1.2.0-6.fc45               fedora     865.0 KiB
 libcap                            x86_64 0:2.78-2.fc45                fedora     208.2 KiB
 libcap-ng                         x86_64 0:0.9.6-1.fc45               fedora      68.8 KiB
 libcbor                           x86_64 0:0.14.0-3.fc45              fedora      83.5 KiB
 libcom_err                        x86_64 0:1.47.4-2.fc45              fedora      63.0 KiB
 libcurl                           x86_64 0:8.21.0-6.fc45              fedora       1.1 MiB
 libeconf                          x86_64 0:0.7.9-4.fc45               fedora      64.8 KiB
 libevent                          x86_64 0:2.1.13-1.fc45              fedora     980.7 KiB
 libfdisk                          x86_64 0:2.42.4-1.fc45              fedora     392.3 KiB
 libffi                            x86_64 0:3.5.2-3.fc45               fedora      83.7 KiB
 libfido2                          x86_64 0:1.17.0-5.fc45              fedora     256.5 KiB
 libfsverity                       x86_64 0:1.7-4.fc45                 fedora      24.4 KiB
 libgcc                            x86_64 0:16.2.1-2.fc45.1            fedora     270.7 KiB
 libgcrypt                         x86_64 0:1.12.2-2.fc45              fedora       1.7 MiB
 libgomp                           x86_64 0:16.2.1-2.fc45.1            fedora     577.5 KiB
 libgpg-error                      x86_64 0:1.61-2.fc45                fedora     953.9 KiB
 libidn2                           x86_64 0:2.3.8-4.fc45               fedora     556.4 KiB
 libksba                           x86_64 0:1.8.0-3.fc45               fedora     431.1 KiB
 liblastlog2                       x86_64 0:2.42.4-1.fc45              fedora      37.6 KiB
 libmount                          x86_64 0:2.42.4-1.fc45              fedora     408.9 KiB
 libnghttp2                        x86_64 0:1.69.0-6.fc45              fedora     166.1 KiB
 libnghttp3                        x86_64 0:1.18.0-1.fc45              fedora     163.4 KiB
 libpfm                            x86_64 0:4.13.0-23.fc45             fedora       1.7 MiB
 libpkgconf                        x86_64 0:2.5.1-2.fc45               fedora      90.1 KiB
 libpsl                            x86_64 0:0.23.1-1.fc45              fedora      80.4 KiB
 libselinux                        x86_64 0:3.11-5.fc45                fedora     205.2 KiB
 libselinux-utils                  x86_64 0:3.11-5.fc45                fedora     306.0 KiB
 libsemanage                       x86_64 0:3.11-4.fc45                fedora     320.6 KiB
 libsepol                          x86_64 0:3.11-2.fc45                fedora     866.1 KiB
 libsmartcols                      x86_64 0:2.42.4-1.fc45              fedora     188.5 KiB
 libssh                            x86_64 0:0.12.2-1.fc45              fedora     725.7 KiB
 libssh-config                     noarch 0:0.12.2-1.fc45              fedora     277.0   B
 libstdc++                         x86_64 0:16.2.1-2.fc45.1            fedora       3.1 MiB
 libtasn1                          x86_64 0:4.21.0-2.fc45              fedora     176.6 KiB
 libtool-ltdl                      x86_64 0:2.5.4-11.fc45              fedora      70.0 KiB
 libunistring                      x86_64 0:1.1-12.fc45                fedora       1.7 MiB
 libusb1                           x86_64 0:1.0.30-2.fc45              fedora     180.1 KiB
 libuuid                           x86_64 0:2.42.4-1.fc45              fedora      37.2 KiB
 libverto                          x86_64 0:0.3.2-13.fc45              fedora      25.3 KiB
 libxcrypt                         x86_64 0:4.5.2-4.fc45               fedora     293.2 KiB
 libxml2                           x86_64 0:2.15.4-1.fc45              fedora       1.7 MiB
 libzstd                           x86_64 0:1.5.7-6.fc45               fedora     956.1 KiB
 linkdupes                         x86_64 0:0.7.3-3.fc45               fedora     782.1 KiB
 lua-libs                          x86_64 0:5.5.1-2.fc45               fedora     298.0 KiB
 lua-srpm-macros                   noarch 0:1-18.fc45                  fedora       1.3 KiB
 lz4-libs                          x86_64 0:1.10.0-5.fc45              fedora     165.3 KiB
 meson-srpm-macros                 noarch 0:1.12.1-1.fc45              fedora       1.7 KiB
 mpfr                              x86_64 0:4.2.2-4.fc45               fedora     849.2 KiB
 ncurses-base                      noarch 0:6.6-3.fc45                 fedora     329.7 KiB
 ncurses-libs                      x86_64 0:6.6-3.fc45                 fedora     969.1 KiB
 nettle                            x86_64 0:4.0-5.fc45                 fedora     801.9 KiB
 ngtcp2                            x86_64 0:1.22.1-3.fc45              fedora     334.3 KiB
 ngtcp2-crypto-ossl                x86_64 0:1.22.1-3.fc45              fedora      51.6 KiB
 npth                              x86_64 0:1.8-5.fc45                 fedora      49.5 KiB
 ocaml-srpm-macros                 noarch 0:11-4.fc45                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 0:2-22.fc45                  fedora     112.0   B
 openldap                          x86_64 0:2.6.14-1.fc45              fedora     678.9 KiB
 openssl-libs                      x86_64 1:4.0.3-1.fc45               fedora       6.7 MiB
 p11-kit                           x86_64 0:0.26.5-1.fc45              fedora       2.6 MiB
 p11-kit-trust                     x86_64 0:0.26.5-1.fc45              fedora     478.4 KiB
 package-notes-srpm-macros         noarch 0:0.20-2.fc45                fedora       1.6 KiB
 pam-libs                          x86_64 0:1.7.2-4.fc45               fedora     134.5 KiB
 pcre2                             x86_64 0:10.47-1.fc45.2             fedora     718.5 KiB
 pcre2-syntax                      noarch 0:10.47-1.fc45.2             fedora     281.9 KiB
 perl-srpm-macros                  noarch 0:1-65.fc45                  fedora     861.0   B
 pkgconf                           x86_64 0:2.5.1-2.fc45               fedora      92.7 KiB
 pkgconf-m4                        noarch 0:2.5.1-2.fc45               fedora      14.3 KiB
 pkgconf-pkg-config                x86_64 0:2.5.1-2.fc45               fedora     989.0   B
 policycoreutils                   x86_64 0:3.11-2.fc45                fedora     892.9 KiB
 popt                              x86_64 0:1.19-11.fc45               fedora     136.7 KiB
 publicsuffix-list-dafsa           noarch 0:20260624-2.fc45            fedora      71.3 KiB
 pyproject-srpm-macros             noarch 0:1.23.2-1.fc45              fedora       3.4 KiB
 python-srpm-macros                noarch 0:3.15-2.fc45                fedora      51.6 KiB
 qt5-srpm-macros                   noarch 0:5.15.18-3.fc45             fedora     500.0   B
 qt6-srpm-macros                   noarch 0:6.11.2-1.fc45              fedora     472.0   B
 readline                          x86_64 0:8.3-6.fc45                 fedora     515.5 KiB
 redhat-systemd-presets            noarch 0:102-3.fc45                 fedora       1.0 KiB
 redhat-systemd-presets-common     noarch 0:102-3.fc45                 fedora      16.9 KiB
 rpm                               x86_64 0:6.1.0-1.fc45               fedora       3.1 MiB
 rpm-build-libs                    x86_64 0:6.1.0-1.fc45               fedora     288.3 KiB
 rpm-libs                          x86_64 0:6.1.0-1.fc45               fedora       1.1 MiB
 rpm-plugin-selinux                x86_64 0:6.1.0-1.fc45               fedora      11.9 KiB
 rpm-sequoia                       x86_64 0:1.10.3-1.fc45              fedora       2.4 MiB
 rpm-sign-libs                     x86_64 0:6.1.0-1.fc45               fedora      39.6 KiB
 rust-srpm-macros                  noarch 0:28.5-2.fc45                fedora       5.5 KiB
 selinux-policy                    noarch 0:45.20-1.fc45               fedora      32.1 KiB
 selinux-policy-targeted           noarch 0:45.20-1.fc45               fedora      19.0 MiB
 setup                             noarch 0:2.15.1-2.fc45              fedora     725.6 KiB
 sqlite-libs                       x86_64 0:3.53.4-1.fc45              fedora       1.6 MiB
 systemd-libs                      x86_64 0:262-3.fc45                 fedora       2.8 MiB
 systemd-standalone-sysusers       x86_64 0:262-3.fc45                 fedora     981.3 KiB
 tpm2-tss                          x86_64 0:4.2.0-1.fc45               fedora       1.7 MiB
 tree-sitter-srpm-macros           noarch 0:0.4.6-2.fc45               fedora       8.6 KiB
 util-linux-core                   x86_64 0:2.42.4-1.fc45              fedora       1.5 MiB
 xxhash-libs                       x86_64 0:0.8.4-1.fc45               fedora      94.0 KiB
 xz-libs                           x86_64 1:5.8.3-2.fc45               fedora     221.7 KiB
 zig-srpm-macros                   noarch 0:1-9.fc45                   fedora       1.3 KiB
 zip                               x86_64 0:3.0-46.fc45                fedora     694.1 KiB
 zlib-ng-compat                    x86_64 0:2.3.3-6.fc45               fedora     165.6 KiB
 zstd                              x86_64 0:1.5.7-6.fc45               fedora     502.6 KiB
Installing groups:
 Buildsystem building group                                                                

Transaction Summary:
 Installing:       189 packages

Total size of inbound packages is 72 MiB. Need to download 72 MiB.
After this operation, 233 MiB extra will be used (install 233 MiB, remove 0 B).
[  1/189] bzip2-0:1.0.8-24.fc45.x86_64  100% |   8.5 MiB/s |  52.3 KiB |  00m00s
[  2/189] cpio-0:2.15-10.fc45.x86_64    100% |  35.7 MiB/s | 292.5 KiB |  00m00s
[  3/189] coreutils-0:9.11-6.fc45.x86_6 100% |  63.1 MiB/s |   1.2 MiB |  00m00s
[  4/189] diffutils-0:3.12-6.fc45.x86_6 100% |  55.3 MiB/s | 396.6 KiB |  00m00s
[  5/189] fedora-release-common-0:45-0. 100% |   8.7 MiB/s |  17.9 KiB |  00m00s
[  6/189] bash-0:5.3.15-2.fc45.x86_64   100% |  82.3 MiB/s |   1.9 MiB |  00m00s
[  7/189] glibc-minimal-langpack-0:2.44 100% |  29.3 MiB/s | 120.1 KiB |  00m00s
[  8/189] findutils-1:4.11.0-2.fc45.x86 100% |  92.9 MiB/s | 570.7 KiB |  00m00s
[  9/189] grep-0:3.12-4.fc45.x86_64     100% |  98.0 MiB/s | 301.0 KiB |  00m00s
[ 10/189] gzip-0:1.14-4.fc45.x86_64     100% |  58.5 MiB/s | 179.6 KiB |  00m00s
[ 11/189] info-0:7.3-3.fc45.x86_64      100% |  46.7 MiB/s | 191.2 KiB |  00m00s
[ 12/189] patch-0:2.8-6.fc45.x86_64     100% |  27.9 MiB/s | 114.4 KiB |  00m00s
[ 13/189] redhat-rpm-config-0:345-4.fc4 100% |  15.3 MiB/s |  78.2 KiB |  00m00s
[ 14/189] rpm-build-0:6.1.0-1.fc45.x86_ 100% |  30.9 MiB/s | 158.1 KiB |  00m00s
[ 15/189] sed-0:4.10-2.fc45.x86_64      100% |  78.8 MiB/s | 322.8 KiB |  00m00s
[ 16/189] unzip-0:6.0-71.fc45.x86_64    100% |  32.5 MiB/s | 199.6 KiB |  00m00s
[ 17/189] which-0:2.25-2.fc45.x86_64    100% |  10.3 MiB/s |  42.2 KiB |  00m00s
[ 18/189] tar-2:1.35-10.fc45.x86_64     100% |  65.4 MiB/s | 870.2 KiB |  00m00s
[ 19/189] shadow-utils-2:4.20.0-1.fc45. 100% |  70.8 MiB/s |   1.4 MiB |  00m00s
[ 20/189] xz-1:5.8.3-2.fc45.x86_64      100% |  63.6 MiB/s | 651.2 KiB |  00m00s
[ 21/189] gawk-0:5.4.1-1.fc45.x86_64    100% |  73.6 MiB/s |   1.2 MiB |  00m00s
[ 22/189] util-linux-0:2.42.4-1.fc45.x8 100% |  70.2 MiB/s |   1.3 MiB |  00m00s
[ 23/189] ncurses-libs-0:6.6-3.fc45.x86 100% |  37.3 MiB/s | 343.7 KiB |  00m00s
[ 24/189] filesystem-0:3.18-59.fc45.x86 100% |  64.8 MiB/s |   1.8 MiB |  00m00s
[ 25/189] bzip2-libs-0:1.0.8-24.fc45.x8 100% |   8.5 MiB/s |  43.5 KiB |  00m00s
[ 26/189] gmp-1:6.3.0-6.fc45.x86_64     100% |  52.4 MiB/s | 321.8 KiB |  00m00s
[ 27/189] glibc-0:2.44-1.fc45.x86_64    100% |  68.2 MiB/s |   2.5 MiB |  00m00s
[ 28/189] libacl-0:2.4.0-2.fc45.x86_64  100% |   4.5 MiB/s |  27.5 KiB |  00m00s
[ 29/189] libattr-0:2.6.0-2.fc45.x86_64 100% |   8.8 MiB/s |  18.1 KiB |  00m00s
[ 30/189] libcap-0:2.78-2.fc45.x86_64   100% |  43.3 MiB/s |  88.6 KiB |  00m00s
[ 31/189] coreutils-common-0:9.11-6.fc4 100% | 103.2 MiB/s |   2.2 MiB |  00m00s
[ 32/189] libselinux-0:3.11-5.fc45.x86_ 100% |  16.9 MiB/s | 104.1 KiB |  00m00s
[ 33/189] fedora-repos-0:45-0.6.noarch  100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[ 34/189] redhat-systemd-presets-0:102- 100% |   8.3 MiB/s |   8.5 KiB |  00m00s
[ 35/189] systemd-libs-0:262-3.fc45.x86 100% | 134.1 MiB/s | 961.4 KiB |  00m00s
[ 36/189] glibc-common-0:2.44-1.fc45.x8 100% | 100.7 MiB/s | 412.5 KiB |  00m00s
[ 37/189] pcre2-0:10.47-1.fc45.2.x86_64 100% |  90.1 MiB/s | 276.7 KiB |  00m00s
[ 38/189] openssl-libs-1:4.0.3-1.fc45.x 100% | 117.1 MiB/s |   2.3 MiB |  00m00s
[ 39/189] R-srpm-macros-0:1.3.7-3.fc45. 100% |   3.6 MiB/s |  11.1 KiB |  00m00s
[ 40/189] ed-0:1.22.6-1.fc45.x86_64     100% |  20.9 MiB/s |  85.6 KiB |  00m00s
[ 41/189] ansible-srpm-macros-0:1-22.fc 100% |   9.7 MiB/s |  19.8 KiB |  00m00s
[ 42/189] build-reproducibility-srpm-ma 100% |  10.6 MiB/s |  10.8 KiB |  00m00s
[ 43/189] cmake-srpm-macros-0:4.3.0-5.f 100% |  10.1 MiB/s |  10.3 KiB |  00m00s
[ 44/189] efi-srpm-macros-0:6-9.fc45.no 100% |  20.9 MiB/s |  21.4 KiB |  00m00s
[ 45/189] dwz-0:0.17-3.fc45.x86_64      100% |  68.0 MiB/s | 139.2 KiB |  00m00s
[ 46/189] erlang-srpm-macros-0:0.3.11-2 100% |   4.9 MiB/s |  10.0 KiB |  00m00s
[ 47/189] file-0:5.48-3.fc45.x86_64     100% |  49.5 MiB/s |  50.7 KiB |  00m00s
[ 48/189] filesystem-srpm-macros-0:3.18 100% |  25.8 MiB/s |  26.4 KiB |  00m00s
[ 49/189] fonts-srpm-macros-1:5.0.0-4.f 100% |  26.5 MiB/s |  27.2 KiB |  00m00s
[ 50/189] forge-srpm-macros-0:0.4.0-5.f 100% |  19.3 MiB/s |  19.7 KiB |  00m00s
[ 51/189] fpc-srpm-macros-0:1.3-17.fc45 100% |   7.6 MiB/s |   7.8 KiB |  00m00s
[ 52/189] gap-srpm-macros-0:2-3.fc45.no 100% |   9.1 MiB/s |   9.3 KiB |  00m00s
[ 53/189] ghc-srpm-macros-0:1.10-2.fc45 100% |   8.3 MiB/s |   8.5 KiB |  00m00s
[ 54/189] gnat-srpm-macros-0:7-3.fc45.n 100% |   8.4 MiB/s |   8.6 KiB |  00m00s
[ 55/189] gnome-srpm-macros-0:1.0-2.fc4 100% |   8.6 MiB/s |   8.8 KiB |  00m00s
[ 56/189] go-srpm-macros-0:3.8.0-3.fc45 100% |  27.2 MiB/s |  27.8 KiB |  00m00s
[ 57/189] java-srpm-macros-0:1-9.fc45.n 100% |   8.1 MiB/s |   8.3 KiB |  00m00s
[ 58/189] kernel-srpm-macros-0:1.0-30.f 100% |   8.1 MiB/s |   8.3 KiB |  00m00s
[ 59/189] meson-srpm-macros-0:1.12.1-1. 100% |  11.4 MiB/s |  11.7 KiB |  00m00s
[ 60/189] lua-srpm-macros-0:1-18.fc45.n 100% |   8.5 MiB/s |   8.7 KiB |  00m00s
[ 61/189] package-notes-srpm-macros-0:0 100% |   5.1 MiB/s |  10.5 KiB |  00m00s
[ 62/189] openblas-srpm-macros-0:2-22.f 100% |   3.7 MiB/s |   7.5 KiB |  00m00s
[ 63/189] ocaml-srpm-macros-0:11-4.fc45 100% |   2.9 MiB/s |   9.0 KiB |  00m00s
[ 64/189] perl-srpm-macros-0:1-65.fc45. 100% |   8.2 MiB/s |   8.4 KiB |  00m00s
[ 65/189] pyproject-srpm-macros-0:1.23. 100% |  15.2 MiB/s |  15.6 KiB |  00m00s
[ 66/189] python-srpm-macros-0:3.15-2.f 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[ 67/189] qt5-srpm-macros-0:5.15.18-3.f 100% |   7.9 MiB/s |   8.1 KiB |  00m00s
[ 68/189] qt6-srpm-macros-0:6.11.2-1.fc 100% |   8.9 MiB/s |   9.1 KiB |  00m00s
[ 69/189] rust-srpm-macros-0:28.5-2.fc4 100% |   3.7 MiB/s |  11.4 KiB |  00m00s
[ 70/189] tree-sitter-srpm-macros-0:0.4 100% |  13.7 MiB/s |  14.0 KiB |  00m00s
[ 71/189] rpm-0:6.1.0-1.fc45.x86_64     100% | 139.3 MiB/s | 570.4 KiB |  00m00s
[ 72/189] zig-srpm-macros-0:1-9.fc45.no 100% |   8.6 MiB/s |   8.8 KiB |  00m00s
[ 73/189] zip-0:3.0-46.fc45.x86_64      100% |  86.1 MiB/s | 264.6 KiB |  00m00s
[ 74/189] debugedit-0:5.3-3.fc45.x86_64 100% |  42.9 MiB/s |  87.9 KiB |  00m00s
[ 75/189] elfutils-libelf-0:0.196-1.fc4 100% |  58.2 MiB/s | 238.4 KiB |  00m00s
[ 76/189] elfutils-0:0.196-1.fc45.x86_6 100% | 101.3 MiB/s | 622.3 KiB |  00m00s
[ 77/189] libarchive-0:3.8.9-2.fc45.x86 100% |  87.1 MiB/s | 446.0 KiB |  00m00s
[ 78/189] libgcc-0:16.2.1-2.fc45.1.x86_ 100% |  66.7 MiB/s | 136.6 KiB |  00m00s
[ 79/189] popt-0:1.19-11.fc45.x86_64    100% |   3.6 MiB/s |  66.6 KiB |  00m00s
[ 80/189] readline-0:8.3-6.fc45.x86_64  100% |  11.8 MiB/s | 228.8 KiB |  00m00s
[ 81/189] libstdc++-0:16.2.1-2.fc45.1.x 100% |  43.5 MiB/s |   1.0 MiB |  00m00s
[ 82/189] rpm-build-libs-0:6.1.0-1.fc45 100% |  43.9 MiB/s | 134.8 KiB |  00m00s
[ 83/189] rpm-libs-0:6.1.0-1.fc45.x86_6 100% | 116.4 MiB/s | 476.6 KiB |  00m00s
[ 84/189] zstd-0:1.5.7-6.fc45.x86_64    100% |  93.6 MiB/s | 191.7 KiB |  00m00s
[ 85/189] audit-libs-0:4.2.1-2.fc45.x86 100% |  69.9 MiB/s | 143.3 KiB |  00m00s
[ 86/189] libeconf-0:0.7.9-4.fc45.x86_6 100% |  35.1 MiB/s |  35.9 KiB |  00m00s
[ 87/189] libsemanage-0:3.11-4.fc45.x86 100% |  63.7 MiB/s | 130.5 KiB |  00m00s
[ 88/189] pam-libs-0:1.7.2-4.fc45.x86_6 100% |  57.0 MiB/s |  58.4 KiB |  00m00s
[ 89/189] libxcrypt-0:4.5.2-4.fc45.x86_ 100% |  42.6 MiB/s | 130.9 KiB |  00m00s
[ 90/189] setup-0:2.15.1-2.fc45.noarch  100% |  77.0 MiB/s | 157.6 KiB |  00m00s
[ 91/189] xz-libs-1:5.8.3-2.fc45.x86_64 100% |  16.2 MiB/s | 116.1 KiB |  00m00s
[ 92/189] mpfr-0:4.2.2-4.fc45.x86_64    100% |  43.6 MiB/s | 357.4 KiB |  00m00s
[ 93/189] libblkid-0:2.42.4-1.fc45.x86_ 100% |  65.4 MiB/s | 134.0 KiB |  00m00s
[ 94/189] libcap-ng-0:0.9.6-1.fc45.x86_ 100% |  17.0 MiB/s |  34.8 KiB |  00m00s
[ 95/189] libfdisk-0:2.42.4-1.fc45.x86_ 100% |  82.8 MiB/s | 169.6 KiB |  00m00s
[ 96/189] liblastlog2-0:2.42.4-1.fc45.x 100% |  24.3 MiB/s |  24.8 KiB |  00m00s
[ 97/189] libmount-0:2.42.4-1.fc45.x86_ 100% |  87.6 MiB/s | 179.5 KiB |  00m00s
[ 98/189] libuuid-0:2.42.4-1.fc45.x86_6 100% |  27.0 MiB/s |  27.7 KiB |  00m00s
[ 99/189] libsmartcols-0:2.42.4-1.fc45. 100% |  43.3 MiB/s |  88.6 KiB |  00m00s
[100/189] zlib-ng-compat-0:2.3.3-6.fc45 100% |  44.2 MiB/s |  90.4 KiB |  00m00s
[101/189] util-linux-core-0:2.42.4-1.fc 100% |  94.9 MiB/s | 583.0 KiB |  00m00s
[102/189] ncurses-base-0:6.6-3.fc45.noa 100% |  28.7 MiB/s |  88.1 KiB |  00m00s
[103/189] glibc-gconv-extra-0:2.44-1.fc 100% | 169.9 MiB/s |   1.7 MiB |  00m00s
[104/189] gnulib-l10n-0:20241231-4.fc45 100% |  29.4 MiB/s | 150.4 KiB |  00m00s
[105/189] libsepol-0:3.11-2.fc45.x86_64 100% |  71.3 MiB/s | 365.2 KiB |  00m00s
[106/189] crypto-policies-0:20260713-2. 100% |  23.8 MiB/s |  97.5 KiB |  00m00s
[107/189] ca-certificates-0:2026.2.90_v 100% | 134.6 MiB/s | 964.7 KiB |  00m00s
[108/189] fedora-gpg-keys-0:45-0.6.noar 100% |  46.8 MiB/s | 143.8 KiB |  00m00s
[109/189] redhat-systemd-presets-common 100% |  12.9 MiB/s |  13.2 KiB |  00m00s
[110/189] pcre2-syntax-0:10.47-1.fc45.2 100% |  80.6 MiB/s | 165.1 KiB |  00m00s
[111/189] fips-provider-0:1.5.2-3.fc45. 100% | 146.9 MiB/s |   1.6 MiB |  00m00s
[112/189] linkdupes-0:0.7.3-3.fc45.x86_ 100% | 110.4 MiB/s | 339.2 KiB |  00m00s
[113/189] add-determinism-0:0.7.3-3.fc4 100% | 118.0 MiB/s | 845.7 KiB |  00m00s
[114/189] curl-0:8.21.0-6.fc45.x86_64   100% |  79.4 MiB/s | 243.8 KiB |  00m00s
[115/189] file-libs-0:5.48-3.fc45.x86_6 100% | 123.5 MiB/s | 885.0 KiB |  00m00s
[116/189] elfutils-debuginfod-client-0: 100% |  23.0 MiB/s |  47.1 KiB |  00m00s
[117/189] elfutils-libs-0:0.196-1.fc45. 100% |  69.6 MiB/s | 284.9 KiB |  00m00s
[118/189] json-c-0:0.18-9.fc45.x86_64   100% |  45.6 MiB/s |  46.7 KiB |  00m00s
[119/189] libpfm-0:4.13.0-23.fc45.x86_6 100% |  44.3 MiB/s | 227.0 KiB |  00m00s
[120/189] libzstd-0:1.5.7-6.fc45.x86_64 100% |  50.8 MiB/s | 363.9 KiB |  00m00s
[121/189] libxml2-0:2.15.4-1.fc45.x86_6 100% |  82.6 MiB/s | 676.8 KiB |  00m00s
[122/189] lz4-libs-0:1.10.0-5.fc45.x86_ 100% |  26.2 MiB/s |  80.4 KiB |  00m00s
[123/189] rpm-sign-libs-0:6.1.0-1.fc45. 100% |  13.2 MiB/s |  26.9 KiB |  00m00s
[124/189] libgomp-0:16.2.1-2.fc45.1.x86 100% |  77.6 MiB/s | 397.6 KiB |  00m00s
[125/189] lua-libs-0:5.5.1-2.fc45.x86_6 100% |  35.2 MiB/s | 144.3 KiB |  00m00s
[126/189] rpm-sequoia-0:1.10.3-1.fc45.x 100% |  91.5 MiB/s | 937.1 KiB |  00m00s
[127/189] sqlite-libs-0:3.53.4-1.fc45.x 100% |  61.0 MiB/s | 812.1 KiB |  00m00s
[128/189] ima-evm-utils-libs-0:1.6.2-12 100% |  14.8 MiB/s |  30.2 KiB |  00m00s
[129/189] libfsverity-0:1.7-4.fc45.x86_ 100% |   9.3 MiB/s |  19.0 KiB |  00m00s
[130/189] gpgverify-0:2.2-5.fc45.noarch 100% |  11.0 MiB/s |  11.3 KiB |  00m00s
[131/189] gnupg2-0:2.4.9-18.fc45.x86_64 100% |  82.6 MiB/s |   1.7 MiB |  00m00s
[132/189] gnupg2-dirmngr-0:2.4.9-18.fc4 100% |  45.8 MiB/s | 281.6 KiB |  00m00s
[133/189] gnupg2-gpg-agent-0:2.4.9-18.f 100% |  68.7 MiB/s | 281.3 KiB |  00m00s
[134/189] gnupg2-gpgconf-0:2.4.9-18.fc4 100% |  56.9 MiB/s | 116.5 KiB |  00m00s
[135/189] gnupg2-keyboxd-0:2.4.9-18.fc4 100% |  47.2 MiB/s |  96.6 KiB |  00m00s
[136/189] gnupg2-verify-0:2.4.9-18.fc45 100% |  86.0 MiB/s | 176.1 KiB |  00m00s
[137/189] libassuan-0:2.5.7-6.fc45.x86_ 100% |  33.5 MiB/s |  68.5 KiB |  00m00s
[138/189] npth-0:1.8-5.fc45.x86_64      100% |  12.4 MiB/s |  25.5 KiB |  00m00s
[139/189] libgpg-error-0:1.61-2.fc45.x8 100% |  61.7 MiB/s | 252.9 KiB |  00m00s
[140/189] libgcrypt-0:1.12.2-2.fc45.x86 100% | 102.4 MiB/s | 629.0 KiB |  00m00s
[141/189] tpm2-tss-0:4.2.0-1.fc45.x86_6 100% | 148.7 MiB/s | 456.8 KiB |  00m00s
[142/189] libksba-0:1.8.0-3.fc45.x86_64 100% |  56.1 MiB/s | 172.2 KiB |  00m00s
[143/189] openldap-0:2.6.14-1.fc45.x86_ 100% |  88.8 MiB/s | 272.7 KiB |  00m00s
[144/189] libusb1-0:1.0.30-2.fc45.x86_6 100% |  81.8 MiB/s |  83.8 KiB |  00m00s
[145/189] gnutls-0:3.8.13-3.fc45.x86_64 100% | 177.8 MiB/s |   1.4 MiB |  00m00s
[146/189] libtasn1-0:4.21.0-2.fc45.x86_ 100% |  37.1 MiB/s |  75.9 KiB |  00m00s
[147/189] libidn2-0:2.3.8-4.fc45.x86_64 100% |  42.8 MiB/s | 175.2 KiB |  00m00s
[148/189] libunistring-0:1.1-12.fc45.x8 100% | 177.7 MiB/s | 545.8 KiB |  00m00s
[149/189] nettle-0:4.0-5.fc45.x86_64    100% | 104.9 MiB/s | 429.7 KiB |  00m00s
[150/189] p11-kit-0:0.26.5-1.fc45.x86_6 100% | 109.4 MiB/s | 560.0 KiB |  00m00s
[151/189] libtool-ltdl-0:2.5.4-11.fc45. 100% |  17.9 MiB/s |  36.7 KiB |  00m00s
[152/189] cyrus-sasl-lib-0:2.1.28-37.fc 100% | 133.1 MiB/s | 817.8 KiB |  00m00s
[153/189] libevent-0:2.1.13-1.fc45.x86_ 100% |  56.5 MiB/s | 289.3 KiB |  00m00s
[154/189] libffi-0:3.5.2-3.fc45.x86_64  100% |  20.4 MiB/s |  41.9 KiB |  00m00s
[155/189] alternatives-0:1.33-6.fc45.x8 100% |  38.5 MiB/s |  39.4 KiB |  00m00s
[156/189] gdbm-libs-1:1.23-12.fc45.x86_ 100% |  28.4 MiB/s |  58.2 KiB |  00m00s
[157/189] jansson-0:2.14-5.fc45.x86_64  100% |  11.5 MiB/s |  46.9 KiB |  00m00s
[158/189] pkgconf-pkg-config-0:2.5.1-2. 100% |   2.3 MiB/s |   9.5 KiB |  00m00s
[159/189] pkgconf-m4-0:2.5.1-2.fc45.noa 100% |  13.5 MiB/s |  13.8 KiB |  00m00s
[160/189] pkgconf-0:2.5.1-2.fc45.x86_64 100% |   3.2 MiB/s |  49.0 KiB |  00m00s
[161/189] libpkgconf-0:2.5.1-2.fc45.x86 100% |   3.0 MiB/s |  42.6 KiB |  00m00s
[162/189] fedora-release-0:45-0.10.noar 100% |  11.7 MiB/s |  12.0 KiB |  00m00s
[163/189] p11-kit-trust-0:0.26.5-1.fc45 100% |  71.4 MiB/s | 146.3 KiB |  00m00s
[164/189] systemd-standalone-sysusers-0 100% | 105.8 MiB/s | 433.4 KiB |  00m00s
[165/189] xxhash-libs-0:0.8.4-1.fc45.x8 100% |   3.7 MiB/s |  41.3 KiB |  00m00s
[166/189] fedora-release-identity-basic 100% |   1.4 MiB/s |  12.8 KiB |  00m00s
[167/189] binutils-0:2.47-1.fc45.x86_64 100% | 105.8 MiB/s |   6.2 MiB |  00m00s
[168/189] libcurl-0:8.21.0-6.fc45.x86_6 100% |  13.5 MiB/s | 482.2 KiB |  00m00s
[169/189] krb5-libs-0:1.22.2-9.fc45.x86 100% |  27.0 MiB/s | 803.1 KiB |  00m00s
[170/189] libnghttp2-0:1.69.0-6.fc45.x8 100% |   1.6 MiB/s |  77.2 KiB |  00m00s
[171/189] libbrotli-0:1.2.0-6.fc45.x86_ 100% |   6.8 MiB/s | 347.3 KiB |  00m00s
[172/189] gdb-minimal-0:17.2-6.fc45.x86 100% |  40.5 MiB/s |   4.7 MiB |  00m00s
[173/189] libnghttp3-0:1.18.0-1.fc45.x8 100% |  10.5 MiB/s |  75.1 KiB |  00m00s
[174/189] libpsl-0:0.23.1-1.fc45.x86_64 100% |  11.0 MiB/s |  67.6 KiB |  00m00s
[175/189] ngtcp2-crypto-ossl-0:1.22.1-3 100% | 592.0 KiB/s |  27.8 KiB |  00m00s
[176/189] ngtcp2-0:1.22.1-3.fc45.x86_64 100% |   3.2 MiB/s | 157.7 KiB |  00m00s
[177/189] libssh-0:0.12.2-1.fc45.x86_64 100% |   6.0 MiB/s | 295.9 KiB |  00m00s
[178/189] libcom_err-0:1.47.4-2.fc45.x8 100% |  13.0 MiB/s |  26.6 KiB |  00m00s
[179/189] keyutils-libs-0:1.6.3-8.fc45. 100% |  15.4 MiB/s |  31.5 KiB |  00m00s
[180/189] libverto-0:0.3.2-13.fc45.x86_ 100% |  10.2 MiB/s |  21.0 KiB |  00m00s
[181/189] publicsuffix-list-dafsa-0:202 100% |  29.8 MiB/s |  61.1 KiB |  00m00s
[182/189] libfido2-0:1.17.0-5.fc45.x86_ 100% |  52.2 MiB/s | 106.9 KiB |  00m00s
[183/189] libssh-config-0:0.12.2-1.fc45 100% |   8.7 MiB/s |   8.9 KiB |  00m00s
[184/189] libcbor-0:0.14.0-3.fc45.x86_6 100% |  35.9 MiB/s |  36.8 KiB |  00m00s
[185/189] selinux-policy-0:45.20-1.fc45 100% |  20.3 MiB/s |  41.6 KiB |  00m00s
[186/189] policycoreutils-0:3.11-2.fc45 100% |  63.7 MiB/s | 260.9 KiB |  00m00s
[187/189] rpm-plugin-selinux-0:6.1.0-1. 100% | 312.4 KiB/s |  17.8 KiB |  00m00s
[188/189] libselinux-utils-0:3.11-5.fc4 100% |   2.1 MiB/s | 123.6 KiB |  00m00s
[189/189] selinux-policy-targeted-0:45. 100% |  67.5 MiB/s |   6.8 MiB |  00m00s
--------------------------------------------------------------------------------
[189/189] Total                         100% | 114.2 MiB/s |  72.2 MiB |  00m01s
Running transaction
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
[  1/191] Verify package files          100% | 623.0   B/s | 189.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.x86_64
>>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.x86_64
>>> [RPM] failed to open /var/lib/mock/fedora-45-x86_64-1791418617.110913/root/etc/group for id/name lookup: No such file or directory
[  2/191] Prepare transaction           100% |   1.9 KiB/s | 189.0   B |  00m00s
[  3/191] Installing libgcc-0:16.2.1-2. 100% |  66.5 MiB/s | 272.4 KiB |  00m00s
[  4/191] Installing redhat-systemd-pre 100% |   0.0   B/s |   1.5 KiB |  00m00s
[  5/191] Installing redhat-systemd-pre 100% |  17.7 MiB/s |  18.1 KiB |  00m00s
[  6/191] Installing libssh-config-0:0. 100% | 796.9 KiB/s | 816.0   B |  00m00s
[  7/191] Installing publicsuffix-list- 100% |  70.3 MiB/s |  72.0 KiB |  00m00s
[  8/191] Installing fedora-release-ide 100% | 890.6 KiB/s | 912.0   B |  00m00s
[  9/191] Installing fedora-gpg-keys-0: 100% |  29.6 MiB/s | 181.7 KiB |  00m00s
[ 10/191] Installing fedora-repos-0:45- 100% |   0.0   B/s |   5.9 KiB |  00m00s
[ 11/191] Installing fedora-release-com 100% |   7.2 MiB/s |   7.4 KiB |  00m00s
[ 12/191] Installing fedora-release-0:4 100% |   9.3 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 13/191] Installing setup-0:2.15.1-2.f 100% |  23.0 MiB/s | 731.3 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 14/191] Installing filesystem-0:3.18- 100% |   1.8 MiB/s | 253.6 KiB |  00m00s
[ 15/191] Installing pkgconf-m4-0:2.5.1 100% |   0.0   B/s |  14.7 KiB |  00m00s
[ 16/191] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB |  00m00s
[ 17/191] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB |  00m00s
[ 18/191] Installing coreutils-common-0 100% | 288.3 MiB/s |  11.0 MiB |  00m00s
[ 19/191] Installing ncurses-base-0:6.6 100% |  57.8 MiB/s | 355.3 KiB |  00m00s
[ 20/191] Installing bash-0:5.3.15-2.fc 100% | 192.6 MiB/s |   8.5 MiB |  00m00s
[ 21/191] Installing glibc-common-0:2.4 100% |  44.8 MiB/s |   1.0 MiB |  00m00s
[ 22/191] Installing glibc-gconv-extra- 100% | 216.2 MiB/s |   7.8 MiB |  00m00s
[ 23/191] Installing glibc-0:2.44-1.fc4 100% | 127.5 MiB/s |   7.1 MiB |  00m00s
[ 24/191] Installing ncurses-libs-0:6.6 100% | 190.4 MiB/s | 974.9 KiB |  00m00s
[ 25/191] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 26/191] Installing zlib-ng-compat-0:2 100% |  13.5 MiB/s | 166.4 KiB |  00m00s
[ 27/191] Installing bzip2-libs-0:1.0.8 100% |  79.7 MiB/s |  81.6 KiB |  00m00s
[ 28/191] Installing libgpg-error-0:1.6 100% |  42.6 MiB/s | 959.7 KiB |  00m00s
[ 29/191] Installing libstdc++-0:16.2.1 100% | 308.6 MiB/s |   3.1 MiB |  00m00s
[ 30/191] Installing readline-0:8.3-6.f 100% | 252.8 MiB/s | 517.7 KiB |  00m00s
[ 31/191] Installing libzstd-0:1.5.7-6. 100% | 311.7 MiB/s | 957.4 KiB |  00m00s
[ 32/191] Installing elfutils-libelf-0: 100% | 103.1 MiB/s |   1.4 MiB |  00m00s
[ 33/191] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB |  00m00s
[ 34/191] Installing libgcrypt-0:1.12.2 100% | 103.9 MiB/s |   1.7 MiB |  00m00s
[ 35/191] Installing gmp-1:6.3.0-6.fc45 100% | 266.1 MiB/s | 817.4 KiB |  00m00s
[ 36/191] Installing libacl-0:2.4.0-2.f 100% |   0.0   B/s |  44.7 KiB |  00m00s
[ 37/191] Installing systemd-libs-0:262 100% |  37.9 MiB/s |   2.8 MiB |  00m00s
[ 38/191] Installing libuuid-0:2.42.4-1 100% |  37.3 MiB/s |  38.2 KiB |  00m00s
[ 39/191] Installing popt-0:1.19-11.fc4 100% |  46.6 MiB/s | 143.3 KiB |  00m00s
[ 40/191] Installing xz-libs-1:5.8.3-2. 100% | 217.6 MiB/s | 222.8 KiB |  00m00s
[ 41/191] Installing sqlite-libs-0:3.53 100% |  60.0 MiB/s |   1.6 MiB |  00m00s
[ 42/191] Installing npth-0:1.8-5.fc45. 100% |  49.4 MiB/s |  50.6 KiB |  00m00s
[ 43/191] Installing elfutils-libs-0:0. 100% |  19.0 MiB/s | 721.4 KiB |  00m00s
[ 44/191] Installing libblkid-0:2.42.4- 100% | 276.6 MiB/s | 283.3 KiB |  00m00s
[ 45/191] Installing libsepol-0:3.11-2. 100% |  22.9 MiB/s | 867.1 KiB |  00m00s
[ 46/191] Installing gnupg2-gpgconf-0:2 100% |  13.2 MiB/s | 255.9 KiB |  00m00s
[ 47/191] Installing pcre2-0:10.47-1.fc 100% | 234.4 MiB/s | 720.0 KiB |  00m00s
[ 48/191] Installing libselinux-0:3.11- 100% | 201.6 MiB/s | 206.5 KiB |  00m00s
[ 49/191] Installing grep-0:3.12-4.fc45 100% |  17.9 MiB/s |   1.0 MiB |  00m00s
[ 50/191] Installing sed-0:4.10-2.fc45. 100% |  19.0 MiB/s | 874.9 KiB |  00m00s
[ 51/191] Installing findutils-1:4.11.0 100% |  33.8 MiB/s |   2.0 MiB |  00m00s
[ 52/191] Installing libxcrypt-0:4.5.2- 100% | 144.5 MiB/s | 295.9 KiB |  00m00s
[ 53/191] Installing json-c-0:0.18-9.fc 100% |  82.0 MiB/s |  83.9 KiB |  00m00s
[ 54/191] Installing libtasn1-0:4.21.0- 100% |   7.6 MiB/s | 178.5 KiB |  00m00s
[ 55/191] Installing libunistring-0:1.1 100% | 346.9 MiB/s |   1.7 MiB |  00m00s
[ 56/191] Installing libidn2-0:2.3.8-4. 100% |  11.4 MiB/s | 562.6 KiB |  00m00s
[ 57/191] Installing crypto-policies-0: 100% |  22.3 MiB/s | 159.5 KiB |  00m00s
[ 58/191] Installing xz-1:5.8.3-2.fc45. 100% |  28.7 MiB/s |   1.4 MiB |  00m00s
[ 59/191] Installing libmount-0:2.42.4- 100% | 200.1 MiB/s | 409.9 KiB |  00m00s
[ 60/191] Installing gnupg2-verify-0:2. 100% |   6.5 MiB/s | 357.7 KiB |  00m00s
[ 61/191] Installing mpfr-0:4.2.2-4.fc4 100% | 207.7 MiB/s | 850.9 KiB |  00m00s
[ 62/191] Installing gawk-0:5.4.1-1.fc4 100% |  27.5 MiB/s |   2.2 MiB |  00m00s
[ 63/191] Installing dwz-0:0.17-3.fc45. 100% |  15.0 MiB/s | 292.5 KiB |  00m00s
[ 64/191] Installing libksba-0:1.8.0-3. 100% | 105.9 MiB/s | 433.7 KiB |  00m00s
[ 65/191] Installing unzip-0:6.0-71.fc4 100% |  19.8 MiB/s | 445.3 KiB |  00m00s
[ 66/191] Installing file-libs-0:5.48-3 100% |  58.8 MiB/s |  12.3 MiB |  00m00s
[ 67/191] Installing file-0:5.48-3.fc45 100% |   5.3 MiB/s | 103.4 KiB |  00m00s
[ 68/191] Installing diffutils-0:3.12-6 100% |  26.5 MiB/s |   1.6 MiB |  00m00s
[ 69/191] Installing libattr-0:2.6.0-2. 100% |  24.7 MiB/s |  25.2 KiB |  00m00s
[ 70/191] Installing libeconf-0:0.7.9-4 100% |  64.9 MiB/s |  66.4 KiB |  00m00s
[ 71/191] Installing libcap-ng-0:0.9.6- 100% |  69.0 MiB/s |  70.6 KiB |  00m00s
[ 72/191] Installing audit-libs-0:4.2.1 100% |  16.7 MiB/s | 393.1 KiB |  00m00s
[ 73/191] Installing pam-libs-0:1.7.2-4 100% | 133.7 MiB/s | 136.9 KiB |  00m00s
[ 74/191] Installing libcap-0:2.78-2.fc 100% |  10.4 MiB/s | 213.3 KiB |  00m00s
[ 75/191] Installing libsemanage-0:3.11 100% | 157.4 MiB/s | 322.4 KiB |  00m00s
[ 76/191] Installing libsmartcols-0:2.4 100% | 185.0 MiB/s | 189.5 KiB |  00m00s
[ 77/191] Installing lua-libs-0:5.5.1-2 100% |   8.4 MiB/s | 299.5 KiB |  00m00s
[ 78/191] Installing libffi-0:3.5.2-3.f 100% |  83.1 MiB/s |  85.1 KiB |  00m00s
[ 79/191] Installing p11-kit-0:0.26.5-1 100% |  42.5 MiB/s |   2.6 MiB |  00m00s
[ 80/191] Installing alternatives-0:1.3 100% |   2.0 MiB/s |  63.6 KiB |  00m00s
[ 81/191] Installing p11-kit-trust-0:0. 100% |  14.7 MiB/s | 480.1 KiB |  00m00s
[ 82/191] Installing ngtcp2-0:1.22.1-3. 100% | 164.0 MiB/s | 335.8 KiB |  00m00s
[ 83/191] Installing util-linux-core-0: 100% |  40.9 MiB/s |   1.5 MiB |  00m00s
[ 84/191] Installing liblastlog2-0:2.42 100% |   4.8 MiB/s |  39.7 KiB |  00m00s
[ 85/191] Installing zip-0:3.0-46.fc45. 100% |  12.2 MiB/s | 698.0 KiB |  00m00s
[ 86/191] Installing gnupg2-keyboxd-0:2 100% |  22.0 MiB/s | 202.5 KiB |  00m00s
[ 87/191] Installing libpsl-0:0.23.1-1. 100% |  79.6 MiB/s |  81.5 KiB |  00m00s
[ 88/191] Installing tar-2:1.35-10.fc45 100% |  48.0 MiB/s |   3.0 MiB |  00m00s
[ 89/191] Installing linkdupes-0:0.7.3- 100% |  34.8 MiB/s | 783.5 KiB |  00m00s
[ 90/191] Installing libselinux-utils-0 100% |   5.7 MiB/s | 320.3 KiB |  00m00s
[ 91/191] Installing libfdisk-0:2.42.4- 100% | 192.0 MiB/s | 393.2 KiB |  00m00s
[ 92/191] Installing fips-provider-0:1. 100% |  58.8 MiB/s |   4.8 MiB |  00m00s
[ 93/191] Installing openssl-libs-1:4.0 100% |  62.6 MiB/s |   6.7 MiB |  00m00s
[ 94/191] Installing coreutils-0:9.11-6 100% |  40.3 MiB/s |   5.9 MiB |  00m00s
[ 95/191] Installing ca-certificates-0: 100% |   1.0 MiB/s |   2.5 MiB |  00m02s
[ 96/191] Installing gzip-0:1.14-4.fc45 100% |  17.3 MiB/s | 407.2 KiB |  00m00s
[ 97/191] Installing util-linux-0:2.42. 100% |  64.8 MiB/s |   3.8 MiB |  00m00s
[ 98/191] Installing policycoreutils-0: 100% |  18.4 MiB/s | 921.4 KiB |  00m00s
[ 99/191] Installing selinux-policy-0:4 100% |   1.1 MiB/s |  34.5 KiB |  00m00s
[100/191] Installing selinux-policy-tar 100% | 137.7 MiB/s |  15.2 MiB |  00m00s
[101/191] Installing rpm-sequoia-0:1.10 100% | 243.5 MiB/s |   2.4 MiB |  00m00s
[102/191] Installing libfsverity-0:1.7- 100% |  24.8 MiB/s |  25.4 KiB |  00m00s
[103/191] Installing libevent-0:2.1.13- 100% | 240.4 MiB/s | 984.5 KiB |  00m00s
[104/191] Installing ngtcp2-crypto-ossl 100% |  25.6 MiB/s |  52.5 KiB |  00m00s
[105/191] Installing libusb1-0:1.0.30-2 100% |   9.3 MiB/s | 181.8 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.x86_64
>>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.x86_64
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[106/191] Installing tpm2-tss-0:4.2.0-1 100% | 185.3 MiB/s |   1.7 MiB |  00m00s
[107/191] Installing ima-evm-utils-libs 100% |  56.5 MiB/s |  57.9 KiB |  00m00s
[108/191] Installing gnupg2-gpg-agent-0 100% |  19.1 MiB/s | 682.8 KiB |  00m00s
[109/191] Installing nettle-0:4.0-5.fc4 100% | 196.5 MiB/s | 805.0 KiB |  00m00s
[110/191] Installing gnutls-0:3.8.13-3. 100% | 213.2 MiB/s |   3.8 MiB |  00m00s
[111/191] Installing zstd-0:1.5.7-6.fc4 100% |  21.5 MiB/s | 506.1 KiB |  00m00s
[112/191] Installing libxml2-0:2.15.4-1 100% |  61.3 MiB/s |   1.7 MiB |  00m00s
[113/191] Installing bzip2-0:1.0.8-24.f 100% |   4.4 MiB/s |  99.5 KiB |  00m00s
[114/191] Installing add-determinism-0: 100% |  32.2 MiB/s |   2.2 MiB |  00m00s
[115/191] Installing build-reproducibil 100% |   1.5 MiB/s |   1.5 KiB |  00m00s
[116/191] Installing cpio-0:2.15-10.fc4 100% |  20.1 MiB/s |   1.1 MiB |  00m00s
[117/191] Installing ed-0:1.22.6-1.fc45 100% |   7.5 MiB/s | 153.2 KiB |  00m00s
[118/191] Installing patch-0:2.8-6.fc45 100% |  11.1 MiB/s | 228.1 KiB |  00m00s
[119/191] Installing libpfm-0:4.13.0-23 100% |  27.4 MiB/s |   1.7 MiB |  00m00s
[120/191] Installing lz4-libs-0:1.10.0- 100% | 162.5 MiB/s | 166.4 KiB |  00m00s
[121/191] Installing libarchive-0:3.8.9 100% |  51.7 MiB/s |   1.0 MiB |  00m00s
[122/191] Installing libgomp-0:16.2.1-2 100% | 188.4 MiB/s | 578.9 KiB |  00m00s
[123/191] Installing libtool-ltdl-0:2.5 100% |  69.5 MiB/s |  71.1 KiB |  00m00s
[124/191] Installing gdbm-libs-1:1.23-1 100% |   7.8 MiB/s | 135.4 KiB |  00m00s
[125/191] Installing cyrus-sasl-lib-0:2 100% |  32.0 MiB/s |   2.3 MiB |  00m00s
[126/191] Installing openldap-0:2.6.14- 100% |  44.4 MiB/s | 682.7 KiB |  00m00s
[127/191] Installing gnupg2-dirmngr-0:2 100% |  17.7 MiB/s | 632.8 KiB |  00m00s
[128/191] Installing gnupg2-0:2.4.9-18. 100% |  68.4 MiB/s |   6.5 MiB |  00m00s
[129/191] Installing gpgverify-0:2.2-5. 100% |   9.2 MiB/s |   9.4 KiB |  00m00s
[130/191] Installing jansson-0:2.14-5.f 100% |  88.2 MiB/s |  90.3 KiB |  00m00s
[131/191] Installing libpkgconf-0:2.5.1 100% |  89.1 MiB/s |  91.3 KiB |  00m00s
[132/191] Installing pkgconf-0:2.5.1-2. 100% |   3.7 MiB/s |  95.2 KiB |  00m00s
[133/191] Installing pkgconf-pkg-config 100% |  65.7 KiB/s |   1.8 KiB |  00m00s
[134/191] Installing systemd-standalone 100% |  41.7 MiB/s | 981.8 KiB |  00m00s
[135/191] Installing rpm-libs-0:6.1.0-1 100% |  55.0 MiB/s |   1.1 MiB |  00m00s
[136/191] Installing rpm-sign-libs-0:6. 100% |  39.5 MiB/s |  40.5 KiB |  00m00s
[137/191] Installing rpm-build-libs-0:6 100% | 282.4 MiB/s | 289.1 KiB |  00m00s
[138/191] Installing xxhash-libs-0:0.8. 100% |  93.1 MiB/s |  95.4 KiB |  00m00s
[139/191] Installing libbrotli-0:1.2.0- 100% |  38.5 MiB/s | 867.3 KiB |  00m00s
[140/191] Installing libnghttp2-0:1.69. 100% | 163.3 MiB/s | 167.3 KiB |  00m00s
[141/191] Installing libnghttp3-0:1.18. 100% | 161.0 MiB/s | 164.8 KiB |  00m00s
[142/191] Installing keyutils-libs-0:1. 100% |  54.3 MiB/s |  55.6 KiB |  00m00s
[143/191] Installing libcom_err-0:1.47. 100% |  62.6 MiB/s |  64.1 KiB |  00m00s
[144/191] Installing libverto-0:0.3.2-1 100% |  26.4 MiB/s |  27.1 KiB |  00m00s
[145/191] Installing krb5-libs-0:1.22.2 100% |  74.6 MiB/s |   2.4 MiB |  00m00s
[146/191] Installing libcbor-0:0.14.0-3 100% |  82.9 MiB/s |  84.9 KiB |  00m00s
[147/191] Installing libfido2-0:1.17.0- 100% | 252.0 MiB/s | 258.1 KiB |  00m00s
[148/191] Installing libssh-0:0.12.2-1. 100% |  39.5 MiB/s | 727.8 KiB |  00m00s
[149/191] Installing libcurl-0:8.21.0-6 100% | 264.5 MiB/s |   1.1 MiB |  00m00s
[150/191] Installing elfutils-debuginfo 100% |   4.0 MiB/s |  82.2 KiB |  00m00s
[151/191] Installing elfutils-0:0.196-1 100% |  43.7 MiB/s |   3.1 MiB |  00m00s
[152/191] Installing binutils-0:2.47-1. 100% |  96.6 MiB/s |  28.4 MiB |  00m00s
[153/191] Installing gdb-minimal-0:17.2 100% |  86.9 MiB/s |  14.2 MiB |  00m00s
[154/191] Installing debugedit-0:5.3-3. 100% |   9.9 MiB/s | 224.1 KiB |  00m00s
[155/191] Installing curl-0:8.21.0-6.fc 100% |   6.9 MiB/s | 490.6 KiB |  00m00s
[156/191] Installing rpm-0:6.1.0-1.fc45 100% |  41.7 MiB/s |   2.5 MiB |  00m00s
[157/191] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0   B |  00m00s
[158/191] Installing efi-srpm-macros-0: 100% |  40.3 MiB/s |  41.3 KiB |  00m00s
[159/191] Installing java-srpm-macros-0 100% |  62.3 KiB/s |   1.1 KiB |  00m00s
[160/191] Installing lua-srpm-macros-0: 100% |   1.9 MiB/s |   1.9 KiB |  00m00s
[161/191] Installing tree-sitter-srpm-m 100% | 369.0 KiB/s |   9.6 KiB |  00m00s
[162/191] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[163/191] Installing filesystem-srpm-ma 100% |   0.0   B/s |  38.9 KiB |  00m00s
[164/191] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[165/191] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 748.0   B |  00m00s
[166/191] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[167/191] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[168/191] Installing package-notes-srpm 100% |   0.0   B/s |   2.1 KiB |  00m00s
[169/191] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[170/191] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[171/191] Installing meson-srpm-macros- 100% |   0.0   B/s |   1.9 KiB |  00m00s
[172/191] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[173/191] Installing gnome-srpm-macros- 100% |   0.0   B/s |   4.1 KiB |  00m00s
[174/191] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[175/191] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[176/191] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[177/191] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[178/191] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[179/191] Installing redhat-rpm-config- 100% |  93.0 MiB/s | 190.4 KiB |  00m00s
[180/191] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[181/191] Installing rpm-build-0:6.1.0- 100% |  15.0 MiB/s | 322.1 KiB |  00m00s
[182/191] Installing erlang-srpm-macros 100% |   0.0   B/s |   2.5 KiB |  00m00s
[183/191] Installing pyproject-srpm-mac 100% |   0.0   B/s |   4.0 KiB |  00m00s
[184/191] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[185/191] Installing go-srpm-macros-0:3 100% |  61.6 MiB/s |  63.0 KiB |  00m00s
[186/191] Installing R-srpm-macros-0:1. 100% |   0.0   B/s |   4.4 KiB |  00m00s
[187/191] Installing python-srpm-macros 100% |  51.7 MiB/s |  52.9 KiB |  00m00s
[188/191] Installing rpm-plugin-selinux 100% |   0.0   B/s |  12.9 KiB |  00m00s
[189/191] Installing which-0:2.25-2.fc4 100% |   4.2 MiB/s |  85.8 KiB |  00m00s
[190/191] Installing shadow-utils-2:4.2 100% |  54.8 MiB/s |   3.9 MiB |  00m00s
[191/191] Installing info-0:7.3-3.fc45. 100% |  33.1 KiB/s | 372.8 KiB |  00m11s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-3.fc45.noarch
add-determinism-0.7.3-3.fc45.x86_64
alternatives-1.33-6.fc45.x86_64
ansible-srpm-macros-1-22.fc45.noarch
audit-libs-4.2.1-2.fc45.x86_64
bash-5.3.15-2.fc45.x86_64
binutils-2.47-1.fc45.x86_64
build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch
bzip2-1.0.8-24.fc45.x86_64
bzip2-libs-1.0.8-24.fc45.x86_64
ca-certificates-2026.2.90_v9.0.317-1.fc45.noarch
cmake-srpm-macros-4.3.0-5.fc45.noarch
coreutils-9.11-6.fc45.x86_64
coreutils-common-9.11-6.fc45.x86_64
cpio-2.15-10.fc45.x86_64
crypto-policies-20260713-2.gitc42da77.fc45.noarch
curl-8.21.0-6.fc45.x86_64
cyrus-sasl-lib-2.1.28-37.fc45.x86_64
debugedit-5.3-3.fc45.x86_64
diffutils-3.12-6.fc45.x86_64
dwz-0.17-3.fc45.x86_64
ed-1.22.6-1.fc45.x86_64
efi-srpm-macros-6-9.fc45.noarch
elfutils-0.196-1.fc45.x86_64
elfutils-debuginfod-client-0.196-1.fc45.x86_64
elfutils-libelf-0.196-1.fc45.x86_64
elfutils-libs-0.196-1.fc45.x86_64
erlang-srpm-macros-0.3.11-2.fc45.noarch
fedora-gpg-keys-45-0.6.noarch
fedora-release-45-0.10.noarch
fedora-release-common-45-0.10.noarch
fedora-release-identity-basic-45-0.10.noarch
fedora-repos-45-0.6.noarch
file-5.48-3.fc45.x86_64
file-libs-5.48-3.fc45.x86_64
filesystem-3.18-59.fc45.x86_64
filesystem-srpm-macros-3.18-59.fc45.noarch
findutils-4.11.0-2.fc45.x86_64
fips-provider-1.5.2-3.fc45.x86_64
fonts-srpm-macros-5.0.0-4.fc45.noarch
forge-srpm-macros-0.4.0-5.fc45.noarch
fpc-srpm-macros-1.3-17.fc45.noarch
gap-srpm-macros-2-3.fc45.noarch
gawk-5.4.1-1.fc45.x86_64
gdb-minimal-17.2-6.fc45.x86_64
gdbm-libs-1.23-12.fc45.x86_64
ghc-srpm-macros-1.10-2.fc45.noarch
glibc-2.44-1.fc45.x86_64
glibc-common-2.44-1.fc45.x86_64
glibc-gconv-extra-2.44-1.fc45.x86_64
glibc-minimal-langpack-2.44-1.fc45.x86_64
gmp-6.3.0-6.fc45.x86_64
gnat-srpm-macros-7-3.fc45.noarch
gnome-srpm-macros-1.0-2.fc45.noarch
gnulib-l10n-20241231-4.fc45.noarch
gnupg2-2.4.9-18.fc45.x86_64
gnupg2-dirmngr-2.4.9-18.fc45.x86_64
gnupg2-gpg-agent-2.4.9-18.fc45.x86_64
gnupg2-gpgconf-2.4.9-18.fc45.x86_64
gnupg2-keyboxd-2.4.9-18.fc45.x86_64
gnupg2-verify-2.4.9-18.fc45.x86_64
gnutls-3.8.13-3.fc45.x86_64
go-srpm-macros-3.8.0-3.fc45.noarch
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpgverify-2.2-5.fc45.noarch
grep-3.12-4.fc45.x86_64
gzip-1.14-4.fc45.x86_64
ima-evm-utils-libs-1.6.2-12.fc45.x86_64
info-7.3-3.fc45.x86_64
jansson-2.14-5.fc45.x86_64
java-srpm-macros-1-9.fc45.noarch
json-c-0.18-9.fc45.x86_64
kernel-srpm-macros-1.0-30.fc45.noarch
keyutils-libs-1.6.3-8.fc45.x86_64
krb5-libs-1.22.2-9.fc45.x86_64
libacl-2.4.0-2.fc45.x86_64
libarchive-3.8.9-2.fc45.x86_64
libassuan-2.5.7-6.fc45.x86_64
libattr-2.6.0-2.fc45.x86_64
libblkid-2.42.4-1.fc45.x86_64
libbrotli-1.2.0-6.fc45.x86_64
libcap-2.78-2.fc45.x86_64
libcap-ng-0.9.6-1.fc45.x86_64
libcbor-0.14.0-3.fc45.x86_64
libcom_err-1.47.4-2.fc45.x86_64
libcurl-8.21.0-6.fc45.x86_64
libeconf-0.7.9-4.fc45.x86_64
libevent-2.1.13-1.fc45.x86_64
libfdisk-2.42.4-1.fc45.x86_64
libffi-3.5.2-3.fc45.x86_64
libfido2-1.17.0-5.fc45.x86_64
libfsverity-1.7-4.fc45.x86_64
libgcc-16.2.1-2.fc45.1.x86_64
libgcrypt-1.12.2-2.fc45.x86_64
libgomp-16.2.1-2.fc45.1.x86_64
libgpg-error-1.61-2.fc45.x86_64
libidn2-2.3.8-4.fc45.x86_64
libksba-1.8.0-3.fc45.x86_64
liblastlog2-2.42.4-1.fc45.x86_64
libmount-2.42.4-1.fc45.x86_64
libnghttp2-1.69.0-6.fc45.x86_64
libnghttp3-1.18.0-1.fc45.x86_64
libpfm-4.13.0-23.fc45.x86_64
libpkgconf-2.5.1-2.fc45.x86_64
libpsl-0.23.1-1.fc45.x86_64
libselinux-3.11-5.fc45.x86_64
libselinux-utils-3.11-5.fc45.x86_64
libsemanage-3.11-4.fc45.x86_64
libsepol-3.11-2.fc45.x86_64
libsmartcols-2.42.4-1.fc45.x86_64
libssh-0.12.2-1.fc45.x86_64
libssh-config-0.12.2-1.fc45.noarch
libstdc++-16.2.1-2.fc45.1.x86_64
libtasn1-4.21.0-2.fc45.x86_64
libtool-ltdl-2.5.4-11.fc45.x86_64
libunistring-1.1-12.fc45.x86_64
libusb1-1.0.30-2.fc45.x86_64
libuuid-2.42.4-1.fc45.x86_64
libverto-0.3.2-13.fc45.x86_64
libxcrypt-4.5.2-4.fc45.x86_64
libxml2-2.15.4-1.fc45.x86_64
libzstd-1.5.7-6.fc45.x86_64
linkdupes-0.7.3-3.fc45.x86_64
lua-libs-5.5.1-2.fc45.x86_64
lua-srpm-macros-1-18.fc45.noarch
lz4-libs-1.10.0-5.fc45.x86_64
meson-srpm-macros-1.12.1-1.fc45.noarch
mpfr-4.2.2-4.fc45.x86_64
ncurses-base-6.6-3.fc45.noarch
ncurses-libs-6.6-3.fc45.x86_64
nettle-4.0-5.fc45.x86_64
ngtcp2-1.22.1-3.fc45.x86_64
ngtcp2-crypto-ossl-1.22.1-3.fc45.x86_64
npth-1.8-5.fc45.x86_64
ocaml-srpm-macros-11-4.fc45.noarch
openblas-srpm-macros-2-22.fc45.noarch
openldap-2.6.14-1.fc45.x86_64
openssl-libs-4.0.3-1.fc45.x86_64
p11-kit-0.26.5-1.fc45.x86_64
p11-kit-trust-0.26.5-1.fc45.x86_64
package-notes-srpm-macros-0.20-2.fc45.noarch
pam-libs-1.7.2-4.fc45.x86_64
patch-2.8-6.fc45.x86_64
pcre2-10.47-1.fc45.2.x86_64
pcre2-syntax-10.47-1.fc45.2.noarch
perl-srpm-macros-1-65.fc45.noarch
pkgconf-2.5.1-2.fc45.x86_64
pkgconf-m4-2.5.1-2.fc45.noarch
pkgconf-pkg-config-2.5.1-2.fc45.x86_64
policycoreutils-3.11-2.fc45.x86_64
popt-1.19-11.fc45.x86_64
publicsuffix-list-dafsa-20260624-2.fc45.noarch
pyproject-srpm-macros-1.23.2-1.fc45.noarch
python-srpm-macros-3.15-2.fc45.noarch
qt5-srpm-macros-5.15.18-3.fc45.noarch
qt6-srpm-macros-6.11.2-1.fc45.noarch
readline-8.3-6.fc45.x86_64
redhat-rpm-config-345-4.fc45.noarch
redhat-systemd-presets-102-3.fc45.noarch
redhat-systemd-presets-common-102-3.fc45.noarch
rpm-6.1.0-1.fc45.x86_64
rpm-build-6.1.0-1.fc45.x86_64
rpm-build-libs-6.1.0-1.fc45.x86_64
rpm-libs-6.1.0-1.fc45.x86_64
rpm-plugin-selinux-6.1.0-1.fc45.x86_64
rpm-sequoia-1.10.3-1.fc45.x86_64
rpm-sign-libs-6.1.0-1.fc45.x86_64
rust-srpm-macros-28.5-2.fc45.noarch
sed-4.10-2.fc45.x86_64
selinux-policy-45.20-1.fc45.noarch
selinux-policy-targeted-45.20-1.fc45.noarch
setup-2.15.1-2.fc45.noarch
shadow-utils-4.20.0-1.fc45.x86_64
sqlite-libs-3.53.4-1.fc45.x86_64
systemd-libs-262-3.fc45.x86_64
systemd-standalone-sysusers-262-3.fc45.x86_64
tar-1.35-10.fc45.x86_64
tpm2-tss-4.2.0-1.fc45.x86_64
tree-sitter-srpm-macros-0.4.6-2.fc45.noarch
unzip-6.0-71.fc45.x86_64
util-linux-2.42.4-1.fc45.x86_64
util-linux-core-2.42.4-1.fc45.x86_64
which-2.25-2.fc45.x86_64
xxhash-libs-0.8.4-1.fc45.x86_64
xz-5.8.3-2.fc45.x86_64
xz-libs-5.8.3-2.fc45.x86_64
zig-srpm-macros-1-9.fc45.noarch
zip-3.0-46.fc45.x86_64
zlib-ng-compat-2.3.3-6.fc45.x86_64
zstd-1.5.7-6.fc45.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1791331200
Wrote: /builddir/build/SRPMS/cat-surface-1.0.30-1.fc45.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-45-x86_64-1791418617.110913/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-x79hhzv9/cat-surface/cat-surface.spec) Config(child) 0 minutes 45 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/cat-surface-1.0.30-1.fc45.src.rpm)  Config(fedora-45-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-45-x86_64-bootstrap-1791418617.110913/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-45-x86_64-bootstrap-1791418617.110913/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-45-x86_64-1791418617.110913/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc45.x86_64
  rpm-sequoia-1.10.3-1.fc45.x86_64
  dnf5-5.4.6.0-3.fc45.x86_64
  dnf5-plugins-5.4.6.0-3.fc45.x86_64
Finish: chroot init
Start: build phase for cat-surface-1.0.30-1.fc45.src.rpm
Start: build setup for cat-surface-1.0.30-1.fc45.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1791331200
Wrote: /builddir/build/SRPMS/cat-surface-1.0.30-1.fc45.src.rpm
Updating and loading repositories:
 updates                                100% | 196.2 KiB/s |  48.9 KiB |  00m00s
 fedora                                 100% | 163.5 KiB/s |  41.5 KiB |  00m00s
 Copr repository                        100% |  11.2 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "pkgconf-pkg-config-2.5.1-2.fc45.x86_64" is already installed.Package                 Arch   Version              Repository      Size
Installing:
 autoconf               noarch 0:2.73-4.fc45        fedora       2.9 MiB
 automake               noarch 0:1.18.1-5.fc45      fedora       1.8 MiB
 expat-devel            x86_64 0:2.8.3-1.fc45       fedora     236.0 KiB
 fftw-devel             x86_64 0:3.3.10-18.fc45     fedora     283.1 KiB
 gcc                    x86_64 0:16.2.1-2.fc45.1    fedora     121.8 MiB
 gifticlib-devel        x86_64 0:1.0.9-30.fc44      fedora      22.2 KiB
 libtool                x86_64 0:2.5.4-11.fc45      fedora       2.7 MiB
 make                   x86_64 1:4.4.1-13.fc45      fedora       1.8 MiB
 nifticlib-devel        x86_64 0:3.0.1-6.fc45       fedora     197.2 KiB
 python3                x86_64 0:3.15.0~rc2-1.fc45  fedora      28.7 KiB
 zlib-ng-compat-devel   x86_64 0:2.3.3-6.fc45       fedora     107.0 KiB
Installing dependencies:
 annobin-docs           noarch 0:13.28-1.fc45       fedora      99.7 KiB
 annobin-plugin-gcc     x86_64 0:13.28-1.fc45       fedora     709.4 KiB
 cmake-filesystem       x86_64 0:4.3.0-5.fc45       fedora       0.0   B
 cpp                    x86_64 0:16.2.1-2.fc45.1    fedora      42.6 MiB
 emacs-filesystem       x86_64 1:30.2-3.fc45        fedora       0.0   B
 expat                  x86_64 0:2.8.3-1.fc45       fedora     338.4 KiB
 fftw                   x86_64 0:3.3.10-18.fc45     fedora     181.5 KiB
 fftw-libs              x86_64 0:3.3.10-18.fc45     fedora       0.0   B
 fftw-libs-double       x86_64 0:3.3.10-18.fc45     fedora       3.4 MiB
 fftw-libs-long         x86_64 0:3.3.10-18.fc45     fedora       1.5 MiB
 fftw-libs-quad         x86_64 0:3.3.10-18.fc45     fedora       2.5 MiB
 fftw-libs-single       x86_64 0:3.3.10-18.fc45     fedora       3.6 MiB
 gcc-plugin-annobin     x86_64 0:16.2.1-2.fc45.1    fedora      57.1 KiB
 gettext                x86_64 0:1.0-4.fc45         fedora      17.8 MiB
 gettext-common-devel   noarch 0:1.0-4.fc45         fedora     596.2 KiB
 gettext-devel          x86_64 0:1.0-4.fc45         fedora       1.4 MiB
 gettext-envsubst       x86_64 0:1.0-4.fc45         fedora      70.6 KiB
 gettext-libs           x86_64 0:1.0-4.fc45         fedora       2.3 MiB
 gettext-runtime        x86_64 0:1.0-4.fc45         fedora     716.1 KiB
 gifticlib              x86_64 0:1.0.9-30.fc44      fedora     228.8 KiB
 glibc-devel            x86_64 0:2.44-1.fc45        fedora       2.3 MiB
 groff-base             x86_64 0:1.24.1-2.fc45      fedora       4.2 MiB
 kernel-headers         x86_64 0:7.2.4-300.fc45     fedora       7.0 MiB
 libatomic              x86_64 0:16.2.1-2.fc45.1    fedora      45.6 KiB
 libmpc                 x86_64 0:1.4.1-2.fc45       fedora     168.8 KiB
 libquadmath            x86_64 0:16.2.1-2.fc45.1    fedora     321.9 KiB
 libtextstyle           x86_64 0:1.0-4.fc45         fedora     211.4 KiB
 libxcrypt-devel        x86_64 0:4.5.2-4.fc45       fedora      31.0 KiB
 m4                     x86_64 0:1.4.21-3.fc45      fedora     881.1 KiB
 mpdecimal              x86_64 0:4.0.1-4.fc45       fedora     221.2 KiB
 ncurses                x86_64 0:6.6-3.fc45         fedora     611.5 KiB
 nifticlib              x86_64 0:3.0.1-6.fc45       fedora     743.5 KiB
 perl-AutoLoader        noarch 0:5.74-527.fc45      fedora      20.6 KiB
 perl-B                 x86_64 0:1.92-527.fc45      fedora     513.5 KiB
 perl-Carp              noarch 0:1.54-527.fc45      fedora      46.6 KiB
 perl-Class-Struct      noarch 0:0.68-527.fc45      fedora      25.4 KiB
 perl-Data-Dumper       x86_64 0:2.192-528.fc45     fedora     115.5 KiB
 perl-Digest            noarch 0:1.20-527.fc45      fedora      35.2 KiB
 perl-Digest-MD5        x86_64 0:2.59-527.fc45      fedora      59.5 KiB
 perl-DynaLoader        x86_64 0:1.57-527.fc45      fedora      32.1 KiB
 perl-Encode            x86_64 4:3.24-527.fc45      fedora       4.7 MiB
 perl-Errno             x86_64 0:1.39-527.fc45      fedora       8.4 KiB
 perl-Exporter          noarch 0:5.79-527.fc45      fedora      54.2 KiB
 perl-Fcntl             x86_64 0:1.20-527.fc45      fedora      44.7 KiB
 perl-File-Basename     noarch 0:2.86-527.fc45      fedora      14.0 KiB
 perl-File-Compare      noarch 0:1.100.800-527.fc45 fedora       5.6 KiB
 perl-File-Copy         noarch 0:2.43-527.fc45      fedora      19.6 KiB
 perl-File-Find         noarch 0:1.44-527.fc45      fedora      42.0 KiB
 perl-File-Path         noarch 0:2.18-527.fc45      fedora      63.4 KiB
 perl-File-Temp         noarch 1:0.231.200-527.fc45 fedora     163.7 KiB
 perl-File-stat         noarch 0:1.15-527.fc45      fedora      13.7 KiB
 perl-FileHandle        noarch 0:2.05-527.fc45      fedora       9.4 KiB
 perl-Getopt-Long       noarch 1:2.58-527.fc45      fedora     144.5 KiB
 perl-Getopt-Std        noarch 0:1.15-527.fc45      fedora      12.5 KiB
 perl-HTTP-Tiny         noarch 0:0.096-528.fc45     fedora     162.4 KiB
 perl-IO                x86_64 0:1.56-527.fc45      fedora     147.3 KiB
 perl-IO-Socket-IP      noarch 0:0.44-527.fc45      fedora     100.5 KiB
 perl-IO-Socket-SSL     noarch 0:2.099-2.fc45       fedora     726.9 KiB
 perl-IPC-Open3         noarch 0:1.24-527.fc45      fedora      27.7 KiB
 perl-MIME-Base32       noarch 0:1.303-26.fc45      fedora      30.7 KiB
 perl-MIME-Base64       x86_64 0:3.16-527.fc45      fedora      41.9 KiB
 perl-Net-SSLeay        x86_64 0:1.96-5.fc45        fedora       1.3 MiB
 perl-POSIX             x86_64 0:2.26-527.fc45      fedora     229.3 KiB
 perl-PathTools         x86_64 0:3.95-527.fc45      fedora     180.0 KiB
 perl-Pod-Escapes       noarch 1:1.07-527.fc45      fedora      24.9 KiB
 perl-Pod-Perldoc       noarch 0:3.28.01-527.fc45   fedora     163.8 KiB
 perl-Pod-Simple        noarch 1:3.48-527.fc45      fedora     565.2 KiB
 perl-Pod-Usage         noarch 4:2.05-527.fc45      fedora      86.3 KiB
 perl-Scalar-List-Utils x86_64 5:1.70-527.fc45      fedora     144.8 KiB
 perl-SelectSaver       noarch 0:1.03-527.fc45      fedora       2.1 KiB
 perl-Socket            x86_64 4:2.043-1.fc45       fedora     121.7 KiB
 perl-Storable          x86_64 1:3.41-527.fc45      fedora     234.9 KiB
 perl-Symbol            noarch 0:1.09-527.fc45      fedora       6.8 KiB
 perl-Term-ANSIColor    noarch 0:5.01-527.fc45      fedora      97.5 KiB
 perl-Term-Cap          noarch 0:1.18-527.fc45      fedora      29.3 KiB
 perl-Text-ParseWords   noarch 0:3.31-527.fc45      fedora      13.6 KiB
 perl-Text-Tabs+Wrap    noarch 0:2024.001-527.fc45  fedora      22.6 KiB
 perl-Thread-Queue      noarch 0:3.14-527.fc45      fedora      28.9 KiB
 perl-Time-HiRes        x86_64 4:1.9780-527.fc45    fedora     115.6 KiB
 perl-Time-Local        noarch 2:1.350-527.fc45     fedora      69.0 KiB
 perl-URI               noarch 0:5.37-1.fc45        fedora     275.5 KiB
 perl-Unicode-Normalize x86_64 0:1.32-527.fc45      fedora     486.1 KiB
 perl-base              noarch 0:2.27-527.fc45      fedora      12.6 KiB
 perl-constant          noarch 0:1.33-528.fc45      fedora      26.3 KiB
 perl-if                noarch 0:0.61.000-527.fc45  fedora       5.8 KiB
 perl-interpreter       x86_64 4:5.44.0-527.fc45    fedora     119.8 KiB
 perl-libnet            noarch 0:3.15-528.fc45      fedora     288.4 KiB
 perl-libs              x86_64 4:5.44.0-527.fc45    fedora      12.0 MiB
 perl-locale            noarch 0:1.13-527.fc45      fedora       6.1 KiB
 perl-mro               x86_64 0:1.30-527.fc45      fedora      41.4 KiB
 perl-overload          noarch 0:1.40-527.fc45      fedora      71.6 KiB
 perl-overloading       noarch 0:0.03-527.fc45      fedora       4.8 KiB
 perl-parent            noarch 1:0.244-527.fc45     fedora      10.3 KiB
 perl-podlators         noarch 1:6.1.1-1.fc45       fedora     327.2 KiB
 perl-threads           x86_64 1:2.45-527.fc45      fedora     110.8 KiB
 perl-threads-shared    x86_64 0:1.73-527.fc45      fedora      79.5 KiB
 perl-vars              noarch 0:1.05-527.fc45      fedora       3.9 KiB
 python-pip-wheel       noarch 0:26.1.2-5.fc45      fedora       1.2 MiB
 python3-libs           x86_64 0:3.15.0~rc2-1.fc45  fedora      48.2 MiB
 tzdata                 noarch 0:2026c-2.fc45       

fedora       1.2 MiB

Transaction Summary:
 Installing:       111 packages

Total size of inbound packages is 95 MiB. Need to download 95 MiB.
After this operation, 302 MiB extra will be used (install 302 MiB, remove 0 B).
[  1/111] automake-0:1.18.1-5.fc45.noar 100% |  47.1 MiB/s | 723.9 KiB |  00m00s
[  2/111] autoconf-0:2.73-4.fc45.noarch 100% |  41.4 MiB/s | 848.1 KiB |  00m00s
[  3/111] make-1:4.4.1-13.fc45.x86_64   100% |  82.1 MiB/s | 588.3 KiB |  00m00s
[  4/111] libtool-0:2.5.4-11.fc45.x86_6 100% |  27.6 MiB/s | 621.6 KiB |  00m00s
[  5/111] expat-devel-0:2.8.3-1.fc45.x8 100% |   9.1 MiB/s |  56.0 KiB |  00m00s
[  6/111] fftw-devel-0:3.3.10-18.fc45.x 100% |  16.3 MiB/s | 133.6 KiB |  00m00s
[  7/111] gifticlib-devel-0:1.0.9-30.fc 100% |   1.7 MiB/s |  14.0 KiB |  00m00s
[  8/111] nifticlib-devel-0:3.0.1-6.fc4 100% |   9.5 MiB/s |  58.3 KiB |  00m00s
[  9/111] python3-0:3.15.0~rc2-1.fc45.x 100% |   6.7 MiB/s |  27.5 KiB |  00m00s
[ 10/111] zlib-ng-compat-devel-0:2.3.3- 100% |   7.4 MiB/s |  37.8 KiB |  00m00s
[ 11/111] emacs-filesystem-1:30.2-3.fc4 100% |   1.1 MiB/s |   8.1 KiB |  00m00s
[ 12/111] m4-0:1.4.21-3.fc45.x86_64     100% |  56.5 MiB/s | 347.2 KiB |  00m00s
[ 13/111] perl-Carp-0:1.54-527.fc45.noa 100% |   5.6 MiB/s |  28.6 KiB |  00m00s
[ 14/111] perl-Class-Struct-0:0.68-527. 100% |   2.1 MiB/s |  21.8 KiB |  00m00s
[ 15/111] perl-Data-Dumper-0:2.192-528. 100% |   6.1 MiB/s |  56.4 KiB |  00m00s
[ 16/111] perl-Errno-0:1.39-527.fc45.x8 100% |   2.4 MiB/s |  14.6 KiB |  00m00s
[ 17/111] perl-Exporter-0:5.79-527.fc45 100% |   4.3 MiB/s |  30.6 KiB |  00m00s
[ 18/111] perl-File-Basename-0:2.86-527 100% |   2.7 MiB/s |  16.8 KiB |  00m00s
[ 19/111] perl-File-Compare-0:1.100.800 100% |   1.3 MiB/s |  12.9 KiB |  00m00s
[ 20/111] perl-File-Copy-0:2.43-527.fc4 100% |   2.1 MiB/s |  19.7 KiB |  00m00s
[ 21/111] perl-File-Find-0:1.44-527.fc4 100% |   4.1 MiB/s |  25.0 KiB |  00m00s
[ 22/111] perl-File-stat-0:1.15-527.fc4 100% |   2.4 MiB/s |  17.2 KiB |  00m00s
[ 23/111] perl-File-Temp-1:0.231.200-52 100% |   6.4 MiB/s |  59.3 KiB |  00m00s
[ 24/111] perl-Getopt-Long-1:2.58-527.f 100% |   8.8 MiB/s |  63.2 KiB |  00m00s
[ 25/111] perl-IO-0:1.56-527.fc45.x86_6 100% |  10.1 MiB/s |  83.0 KiB |  00m00s
[ 26/111] perl-POSIX-0:2.26-527.fc45.x8 100% |   9.4 MiB/s |  96.6 KiB |  00m00s
[ 27/111] perl-PathTools-0:3.95-527.fc4 100% |  14.3 MiB/s |  88.0 KiB |  00m00s
[ 28/111] perl-constant-0:1.33-528.fc45 100% |   3.2 MiB/s |  22.7 KiB |  00m00s
[ 29/111] perl-Text-ParseWords-0:3.31-5 100% |   1.6 MiB/s |  16.2 KiB |  00m00s
[ 30/111] perl-interpreter-4:5.44.0-527 100% |  11.8 MiB/s |  72.7 KiB |  00m00s
[ 31/111] gcc-0:16.2.1-2.fc45.1.x86_64  100% | 223.0 MiB/s |  43.3 MiB |  00m00s
[ 32/111] perl-File-Path-0:2.18-527.fc4 100% | 683.0 KiB/s |  34.8 KiB |  00m00s
[ 33/111] perl-Thread-Queue-0:3.14-527. 100% | 457.2 KiB/s |  21.0 KiB |  00m00s
[ 34/111] libmpc-0:1.4.1-2.fc45.x86_64  100% |  24.7 MiB/s |  75.7 KiB |  00m00s
[ 35/111] perl-threads-1:2.45-527.fc45. 100% |   8.1 MiB/s |  57.8 KiB |  00m00s
[ 36/111] expat-0:2.8.3-1.fc45.x86_64   100% |  32.2 MiB/s | 132.0 KiB |  00m00s
[ 37/111] fftw-libs-0:3.3.10-18.fc45.x8 100% |   1.4 MiB/s |   7.4 KiB |  00m00s
[ 38/111] fftw-0:3.3.10-18.fc45.x86_64  100% |   4.4 MiB/s |  45.2 KiB |  00m00s
[ 39/111] gifticlib-0:1.0.9-30.fc44.x86 100% |  10.4 MiB/s |  95.6 KiB |  00m00s
[ 40/111] nifticlib-0:3.0.1-6.fc45.x86_ 100% |  27.3 MiB/s | 252.0 KiB |  00m00s
[ 41/111] cmake-filesystem-0:4.3.0-5.fc 100% |   1.8 MiB/s |  14.9 KiB |  00m00s
[ 42/111] perl-B-0:1.92-527.fc45.x86_64 100% |  16.1 MiB/s | 181.8 KiB |  00m00s
[ 43/111] perl-Scalar-List-Utils-5:1.70 100% |   9.2 MiB/s |  75.1 KiB |  00m00s
[ 44/111] cpp-0:16.2.1-2.fc45.1.x86_64  100% | 194.6 MiB/s |  14.6 MiB |  00m00s
[ 45/111] perl-overload-0:1.40-527.fc45 100% |   4.9 MiB/s |  45.2 KiB |  00m00s
[ 46/111] perl-libs-4:5.44.0-527.fc45.x 100% |  69.4 MiB/s |   2.6 MiB |  00m00s
[ 47/111] perl-Fcntl-0:1.20-527.fc45.x8 100% |   2.9 MiB/s |  29.4 KiB |  00m00s
[ 48/111] perl-parent-1:0.244-527.fc45. 100% |   2.1 MiB/s |  14.7 KiB |  00m00s
[ 49/111] perl-Symbol-0:1.09-527.fc45.n 100% |   1.2 MiB/s |  13.9 KiB |  00m00s
[ 50/111] perl-Pod-Usage-4:2.05-527.fc4 100% |   7.9 MiB/s |  40.4 KiB |  00m00s
[ 51/111] python3-libs-0:3.15.0~rc2-1.f 100% | 111.0 MiB/s |  11.2 MiB |  00m00s
[ 52/111] perl-base-0:2.27-527.fc45.noa 100% |   1.0 MiB/s |  15.9 KiB |  00m00s
[ 53/111] perl-SelectSaver-0:1.03-527.f 100% | 810.1 KiB/s |  11.3 KiB |  00m00s
[ 54/111] perl-vars-0:1.05-527.fc45.noa 100% |   2.5 MiB/s |  12.7 KiB |  00m00s
[ 55/111] perl-Socket-4:2.043-1.fc45.x8 100% |   7.8 MiB/s |  55.6 KiB |  00m00s
[ 56/111] perl-locale-0:1.13-527.fc45.n 100% |   2.1 MiB/s |  13.2 KiB |  00m00s
[ 57/111] perl-threads-shared-0:1.73-52 100% |   7.3 MiB/s |  44.9 KiB |  00m00s
[ 58/111] fftw-libs-long-0:3.3.10-18.fc 100% |  25.9 MiB/s | 504.8 KiB |  00m00s
[ 59/111] fftw-libs-quad-0:3.3.10-18.fc 100% |  44.4 MiB/s | 728.2 KiB |  00m00s
[ 60/111] fftw-libs-double-0:3.3.10-18. 100% |  42.6 MiB/s |   1.2 MiB |  00m00s
[ 61/111] mpdecimal-0:4.0.1-4.fc45.x86_ 100% |  19.2 MiB/s |  98.5 KiB |  00m00s
[ 62/111] fftw-libs-single-0:3.3.10-18. 100% |  64.1 MiB/s |   1.2 MiB |  00m00s
[ 63/111] tzdata-0:2026c-2.fc45.noarch  100% |  63.2 MiB/s | 712.2 KiB |  00m00s
[ 64/111] python-pip-wheel-0:26.1.2-5.f 100% |  69.1 MiB/s |   1.2 MiB |  00m00s
[ 65/111] perl-if-0:0.61.000-527.fc45.n 100% |   1.9 MiB/s |  13.7 KiB |  00m00s
[ 66/111] perl-overloading-0:0.03-527.f 100% |   3.1 MiB/s |  12.5 KiB |  00m00s
[ 67/111] perl-mro-0:1.30-527.fc45.x86_ 100% |   4.1 MiB/s |  29.5 KiB |  00m00s
[ 68/111] perl-DynaLoader-0:1.57-527.fc 100% |   2.5 MiB/s |  25.7 KiB |  00m00s
[ 69/111] perl-Pod-Perldoc-0:3.28.01-52 100% |  11.8 MiB/s |  84.7 KiB |  00m00s
[ 70/111] perl-podlators-1:6.1.1-1.fc45 100% |  21.5 MiB/s | 132.4 KiB |  00m00s
[ 71/111] libquadmath-0:16.2.1-2.fc45.1 100% |  20.3 MiB/s | 207.6 KiB |  00m00s
[ 72/111] perl-HTTP-Tiny-0:0.096-528.fc 100% |   8.1 MiB/s |  58.4 KiB |  00m00s
[ 73/111] perl-IPC-Open3-0:1.24-527.fc4 100% |   2.9 MiB/s |  23.7 KiB |  00m00s
[ 74/111] perl-Term-ANSIColor-0:5.01-52 100% |   2.9 MiB/s |  47.3 KiB |  00m00s
[ 75/111] groff-base-0:1.24.1-2.fc45.x8 100% |  30.7 MiB/s |   1.2 MiB |  00m00s
[ 76/111] perl-Pod-Simple-1:3.48-527.fc 100% |   9.0 MiB/s | 222.0 KiB |  00m00s
[ 77/111] perl-Term-Cap-0:1.18-527.fc45 100% |   2.7 MiB/s |  21.7 KiB |  00m00s
[ 78/111] perl-MIME-Base64-0:3.16-527.f 100% |   4.1 MiB/s |  29.6 KiB |  00m00s
[ 79/111] perl-IO-Socket-SSL-0:2.099-2. 100% |  25.6 MiB/s | 236.2 KiB |  00m00s
[ 80/111] perl-Time-HiRes-4:1.9780-527. 100% |   9.2 MiB/s |  56.8 KiB |  00m00s
[ 81/111] perl-Net-SSLeay-0:1.96-5.fc45 100% |  41.0 MiB/s | 378.2 KiB |  00m00s
[ 82/111] perl-Time-Local-2:1.350-527.f 100% |   5.6 MiB/s |  34.2 KiB |  00m00s
[ 83/111] perl-Pod-Escapes-1:1.07-527.f 100% |   2.7 MiB/s |  19.6 KiB |  00m00s
[ 84/111] perl-Text-Tabs+Wrap-0:2024.00 100% |   2.3 MiB/s |  21.5 KiB |  00m00s
[ 85/111] ncurses-0:6.6-3.fc45.x86_64   100% |  38.3 MiB/s | 430.9 KiB |  00m00s
[ 86/111] perl-IO-Socket-IP-0:0.44-527. 100% |   5.9 MiB/s |  42.0 KiB |  00m00s
[ 87/111] perl-URI-0:5.37-1.fc45.noarch 100% |  18.4 MiB/s | 151.0 KiB |  00m00s
[ 88/111] perl-AutoLoader-0:5.74-527.fc 100% |   4.1 MiB/s |  20.9 KiB |  00m00s
[ 89/111] perl-MIME-Base32-0:1.303-26.f 100% |   5.0 MiB/s |  20.4 KiB |  00m00s
[ 90/111] perl-libnet-0:3.15-528.fc45.n 100% |  20.9 MiB/s | 128.3 KiB |  00m00s
[ 91/111] perl-Digest-MD5-0:2.59-527.fc 100% |   6.9 MiB/s |  35.6 KiB |  00m00s
[ 92/111] perl-Unicode-Normalize-0:1.32 100% |  10.3 MiB/s |  73.8 KiB |  00m00s
[ 93/111] perl-FileHandle-0:2.05-527.fc 100% |   3.0 MiB/s |  15.2 KiB |  00m00s
[ 94/111] perl-Digest-0:1.20-527.fc45.n 100% |   4.8 MiB/s |  24.8 KiB |  00m00s
[ 95/111] perl-Getopt-Std-0:1.15-527.fc 100% |   3.0 MiB/s |  15.4 KiB |  00m00s
[ 96/111] perl-Storable-1:3.41-527.fc45 100% |  19.7 MiB/s | 100.6 KiB |  00m00s
[ 97/111] libxcrypt-devel-0:4.5.2-4.fc4 100% |   9.9 MiB/s |  30.4 KiB |  00m00s
[ 98/111] glibc-devel-0:2.44-1.fc45.x86 100% |  71.1 MiB/s | 654.8 KiB |  00m00s
[ 99/111] libatomic-0:16.2.1-2.fc45.1.x 100% |   9.1 MiB/s |  55.7 KiB |  00m00s
[100/111] perl-Encode-4:3.24-527.fc45.x 100% |  45.8 MiB/s |   1.1 MiB |  00m00s
[101/111] gettext-devel-0:1.0-4.fc45.x8 100% |  29.3 MiB/s | 300.3 KiB |  00m00s
[102/111] gettext-common-devel-0:1.0-4. 100% |  49.3 MiB/s | 605.5 KiB |  00m00s
[103/111] gettext-0:1.0-4.fc45.x86_64   100% |  96.9 MiB/s |   2.0 MiB |  00m00s
[104/111] gettext-runtime-0:1.0-4.fc45. 100% |  29.2 MiB/s | 179.3 KiB |  00m00s
[105/111] gettext-libs-0:1.0-4.fc45.x86 100% |  57.8 MiB/s | 829.0 KiB |  00m00s
[106/111] gettext-envsubst-0:1.0-4.fc45 100% |  12.5 MiB/s |  38.4 KiB |  00m00s
[107/111] libtextstyle-0:1.0-4.fc45.x86 100% |  23.5 MiB/s |  96.1 KiB |  00m00s
[108/111] gcc-plugin-annobin-0:16.2.1-2 100% |  11.6 MiB/s |  59.5 KiB |  00m00s
[109/111] annobin-plugin-gcc-0:13.28-1. 100% |  67.9 MiB/s | 695.3 KiB |  00m00s
[110/111] kernel-headers-0:7.2.4-300.fc 100% | 116.7 MiB/s |   1.8 MiB |  00m00s
[111/111] annobin-docs-0:13.28-1.fc45.n 100% |  17.1 MiB/s |  87.3 KiB |  00m00s
--------------------------------------------------------------------------------
[111/111] Total                         100% | 167.6 MiB/s |  94.9 MiB |  00m01s
Running transaction
[  1/113] Verify package files          100% | 311.0   B/s | 111.0   B |  00m00s
[  2/113] Prepare transaction           100% |   1.4 KiB/s | 111.0   B |  00m00s
[  3/113] Installing expat-0:2.8.3-1.fc 100% |  15.1 MiB/s | 340.5 KiB |  00m00s
[  4/113] Installing libtextstyle-0:1.0 100% | 103.6 MiB/s | 212.2 KiB |  00m00s
[  5/113] Installing gettext-libs-0:1.0 100% | 287.6 MiB/s |   2.3 MiB |  00m00s
[  6/113] Installing fftw-libs-single-0 100% | 241.3 MiB/s |   3.6 MiB |  00m00s
[  7/113] Installing fftw-libs-long-0:3 100% | 258.0 MiB/s |   1.5 MiB |  00m00s
[  8/113] Installing fftw-libs-double-0 100% | 310.9 MiB/s |   3.4 MiB |  00m00s
[  9/113] Installing cmake-filesystem-0 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[ 10/113] Installing libmpc-0:1.4.1-2.f 100% | 166.4 MiB/s | 170.4 KiB |  00m00s
[ 11/113] Installing cpp-0:16.2.1-2.fc4 100% | 269.5 MiB/s |  42.6 MiB |  00m00s
[ 12/113] Installing nifticlib-devel-0: 100% |  97.7 MiB/s | 200.1 KiB |  00m00s
[ 13/113] Installing nifticlib-0:3.0.1- 100% |  33.3 MiB/s | 749.3 KiB |  00m00s
[ 14/113] Installing gifticlib-0:1.0.9- 100% |  11.3 MiB/s | 230.9 KiB |  00m00s
[ 15/113] Installing annobin-docs-0:13. 100% |  32.8 MiB/s | 100.8 KiB |  00m00s
[ 16/113] Installing kernel-headers-0:7 100% | 145.9 MiB/s |   7.1 MiB |  00m00s
[ 17/113] Installing glibc-devel-0:2.44 100% | 119.4 MiB/s |   2.4 MiB |  00m00s
[ 18/113] Installing libxcrypt-devel-0: 100% |  32.5 MiB/s |  33.3 KiB |  00m00s
[ 19/113] Installing gettext-envsubst-0 100% |   3.7 MiB/s |  72.0 KiB |  00m00s
[ 20/113] Installing gettext-runtime-0: 100% |  30.8 MiB/s | 726.5 KiB |  00m00s
[ 21/113] Installing gettext-common-dev 100% | 582.5 MiB/s | 596.5 KiB |  00m00s
[ 22/113] Installing libatomic-0:16.2.1 100% |  15.2 MiB/s |  46.7 KiB |  00m00s
[ 23/113] Installing ncurses-0:6.6-3.fc 100% |  16.3 MiB/s | 618.1 KiB |  00m00s
[ 24/113] Installing groff-base-0:1.24. 100% |  87.7 MiB/s |   4.2 MiB |  00m00s
[ 25/113] Installing perl-Digest-0:1.20 100% |  36.1 MiB/s |  37.0 KiB |  00m00s
[ 26/113] Installing perl-Digest-MD5-0: 100% |  60.0 MiB/s |  61.4 KiB |  00m00s
[ 27/113] Installing perl-FileHandle-0: 100% |   0.0   B/s |   9.8 KiB |  00m00s
[ 28/113] Installing perl-B-0:1.92-527. 100% | 168.3 MiB/s | 516.9 KiB |  00m00s
[ 29/113] Installing perl-libnet-0:3.15 100% | 143.4 MiB/s | 293.8 KiB |  00m00s
[ 30/113] Installing perl-Unicode-Norma 100% | 238.5 MiB/s | 488.4 KiB |  00m00s
[ 31/113] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 32/113] Installing perl-Data-Dumper-0 100% |  57.3 MiB/s | 117.4 KiB |  00m00s
[ 33/113] Installing perl-URI-0:5.37-1. 100% |  70.6 MiB/s | 289.2 KiB |  00m00s
[ 34/113] Installing perl-AutoLoader-0: 100% |   0.0   B/s |  21.0 KiB |  00m00s
[ 35/113] Installing perl-IO-Socket-IP- 100% |  99.9 MiB/s | 102.3 KiB |  00m00s
[ 36/113] Installing perl-IO-Socket-SSL 100% | 238.0 MiB/s | 731.0 KiB |  00m00s
[ 37/113] Installing perl-Net-SSLeay-0: 100% | 193.2 MiB/s |   1.4 MiB |  00m00s
[ 38/113] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[ 39/113] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 40/113] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[ 41/113] Installing perl-Time-HiRes-4: 100% |  57.5 MiB/s | 117.7 KiB |  00m00s
[ 42/113] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 43/113] Installing perl-File-Path-0:2 100% |  62.9 MiB/s |  64.4 KiB |  00m00s
[ 44/113] Installing perl-locale-0:1.13 100% |   0.0   B/s |   6.5 KiB |  00m00s
[ 45/113] Installing perl-HTTP-Tiny-0:0 100% | 160.6 MiB/s | 164.5 KiB |  00m00s
[ 46/113] Installing perl-Pod-Simple-1: 100% | 187.1 MiB/s | 574.8 KiB |  00m00s
[ 47/113] Installing perl-Term-Cap-0:1. 100% |  29.8 MiB/s |  30.6 KiB |  00m00s
[ 48/113] Installing perl-Term-ANSIColo 100% |  96.8 MiB/s |  99.1 KiB |  00m00s
[ 49/113] Installing perl-IPC-Open3-0:1 100% |  27.8 MiB/s |  28.5 KiB |  00m00s
[ 50/113] Installing perl-File-Temp-1:0 100% | 161.6 MiB/s | 165.5 KiB |  00m00s
[ 51/113] Installing perl-POSIX-0:2.26- 100% | 225.1 MiB/s | 230.5 KiB |  00m00s
[ 52/113] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 53/113] Installing perl-Pod-Perldoc-0 100% |   7.9 MiB/s | 169.4 KiB |  00m00s
[ 54/113] Installing perl-podlators-1:6 100% |  16.2 MiB/s | 331.1 KiB |  00m00s
[ 55/113] Installing perl-File-stat-0:1 100% |  13.9 MiB/s |  14.2 KiB |  00m00s
[ 56/113] Installing perl-Socket-4:2.04 100% | 120.9 MiB/s | 123.8 KiB |  00m00s
[ 57/113] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.5 KiB |  00m00s
[ 58/113] Installing perl-Symbol-0:1.09 100% |   0.0   B/s |   7.3 KiB |  00m00s
[ 59/113] Installing perl-Pod-Usage-4:2 100% |   4.3 MiB/s |  87.8 KiB |  00m00s
[ 60/113] Installing perl-mro-0:1.30-52 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 61/113] Installing perl-IO-0:1.56-527 100% |  74.0 MiB/s | 151.5 KiB |  00m00s
[ 62/113] Installing perl-overloading-0 100% |   0.0   B/s |   5.5 KiB |  00m00s
[ 63/113] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  13.0 KiB |  00m00s
[ 64/113] Installing perl-Fcntl-0:1.20- 100% |  44.7 MiB/s |  45.8 KiB |  00m00s
[ 65/113] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[ 66/113] Installing perl-Storable-1:3. 100% | 115.5 MiB/s | 236.5 KiB |  00m00s
[ 67/113] Installing perl-Getopt-Long-1 100% |  47.9 MiB/s | 147.2 KiB |  00m00s
[ 68/113] Installing perl-Getopt-Std-0: 100% |   6.4 MiB/s |  13.0 KiB |  00m00s
[ 69/113] Installing perl-MIME-Base64-0 100% |  43.1 MiB/s |  44.1 KiB |  00m00s
[ 70/113] Installing perl-overload-0:1. 100% |  70.3 MiB/s |  72.0 KiB |  00m00s
[ 71/113] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
[ 72/113] Installing perl-parent-1:0.24 100% |   0.0   B/s |  11.0 KiB |  00m00s
[ 73/113] Installing perl-Scalar-List-U 100% |  72.5 MiB/s | 148.6 KiB |  00m00s
[ 74/113] Installing perl-constant-0:1. 100% |  13.4 MiB/s |  27.4 KiB |  00m00s
[ 75/113] Installing perl-File-Basename 100% |   0.0   B/s |  14.6 KiB |  00m00s
[ 76/113] Installing perl-Errno-0:1.39- 100% |   0.0   B/s |   8.8 KiB |  00m00s
[ 77/113] Installing perl-Carp-0:1.54-5 100% |  15.5 MiB/s |  47.7 KiB |  00m00s
[ 78/113] Installing perl-Encode-4:3.24 100% | 106.7 MiB/s |   4.7 MiB |  00m00s
[ 79/113] Installing perl-DynaLoader-0: 100% |  15.9 MiB/s |  32.5 KiB |  00m00s
[ 80/113] Installing perl-PathTools-0:3 100% |  45.0 MiB/s | 184.5 KiB |  00m00s
[ 81/113] Installing perl-Exporter-0:5. 100% |  27.1 MiB/s |  55.5 KiB |  00m00s
[ 82/113] Installing perl-libs-4:5.44.0 100% | 180.4 MiB/s |  12.1 MiB |  00m00s
[ 83/113] Installing perl-interpreter-4 100% |   5.4 MiB/s | 121.4 KiB |  00m00s
[ 84/113] Installing perl-threads-1:2.4 100% |  55.1 MiB/s | 112.9 KiB |  00m00s
[ 85/113] Installing perl-threads-share 100% |  39.9 MiB/s |  81.8 KiB |  00m00s
[ 86/113] Installing perl-Thread-Queue- 100% |  29.7 MiB/s |  30.4 KiB |  00m00s
[ 87/113] Installing perl-File-Compare- 100% |   6.0 MiB/s |   6.2 KiB |  00m00s
[ 88/113] Installing perl-File-Copy-0:2 100% |  19.7 MiB/s |  20.2 KiB |  00m00s
[ 89/113] Installing perl-File-Find-0:1 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 90/113] Installing libquadmath-0:16.2 100% | 157.8 MiB/s | 323.2 KiB |  00m00s
[ 91/113] Installing fftw-libs-quad-0:3 100% | 250.1 MiB/s |   2.5 MiB |  00m00s
[ 92/113] Installing fftw-0:3.3.10-18.f 100% |   7.5 MiB/s | 184.4 KiB |  00m00s
[ 93/113] Installing fftw-libs-0:3.3.10 100% |  30.3 KiB/s | 124.0   B |  00m00s
[ 94/113] Installing tzdata-0:2026c-2.f 100% |  21.8 MiB/s |   1.5 MiB |  00m00s
[ 95/113] Installing python-pip-wheel-0 100% | 415.5 MiB/s |   1.2 MiB |  00m00s
[ 96/113] Installing mpdecimal-0:4.0.1- 100% |  24.2 MiB/s | 222.7 KiB |  00m00s
[ 97/113] Installing python3-libs-0:3.1 100% |  85.0 MiB/s |  48.6 MiB |  00m01s
[ 98/113] Installing python3-0:3.15.0~r 100% |   1.3 MiB/s |  30.5 KiB |  00m00s
[ 99/113] Installing gettext-0:1.0-4.fc 100% | 164.7 MiB/s |  17.8 MiB |  00m00s
[100/113] Installing gettext-devel-0:1. 100% |  47.8 MiB/s |   1.4 MiB |  00m00s
[101/113] Installing m4-0:1.4.21-3.fc45 100% |  19.3 MiB/s | 887.6 KiB |  00m00s
[102/113] Installing emacs-filesystem-1 100% | 793.0 KiB/s | 812.0   B |  00m00s
[103/113] Installing autoconf-0:2.73-4. 100% |  28.2 MiB/s |   2.9 MiB |  00m00s
[104/113] Installing automake-0:1.18.1- 100% |  70.6 MiB/s |   1.8 MiB |  00m00s
[105/113] Installing make-1:4.4.1-13.fc 100% |  69.4 MiB/s |   1.8 MiB |  00m00s
[106/113] Installing gcc-0:16.2.1-2.fc4 100% | 129.1 MiB/s | 121.9 MiB |  00m01s
[107/113] Installing libtool-0:2.5.4-11 100% |  57.2 MiB/s |   2.7 MiB |  00m00s
[108/113] Installing annobin-plugin-gcc 100% |   9.5 MiB/s | 711.1 KiB |  00m00s
[109/113] Installing gcc-plugin-annobin 100% |   3.8 MiB/s |  58.7 KiB |  00m00s
[110/113] Installing fftw-devel-0:3.3.1 100% |  94.1 MiB/s | 289.2 KiB |  00m00s
[111/113] Installing gifticlib-devel-0: 100% |   1.5 MiB/s |  23.2 KiB |  00m00s
[112/113] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.6 KiB |  00m00s
[113/113] Installing expat-devel-0:2.8. 100% |   1.2 MiB/s | 238.6 KiB |  00m00s
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1791331200
Wrote: /builddir/build/SRPMS/cat-surface-1.0.30-1.fc45.src.rpm
Updating and loading repositories:
 updates                                100% | 248.1 KiB/s |  48.9 KiB |  00m00s
 fedora                                 100% | 217.4 KiB/s |  41.5 KiB |  00m00s
 Copr repository                        100% |  19.1 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Nothing to do.
Package "autoconf-2.73-4.fc45.noarch" is already installed.
Package "automake-1.18.1-5.fc45.noarch" is already installed.
Package "expat-devel-2.8.3-1.fc45.x86_64" is already installed.
Package "fftw-devel-3.3.10-18.fc45.x86_64" is already installed.
Package "gcc-16.2.1-2.fc45.1.x86_64" is already installed.
Package "gifticlib-devel-1.0.9-30.fc44.x86_64" is already installed.
Package "libtool-2.5.4-11.fc45.x86_64" is already installed.
Package "make-1:4.4.1-13.fc45.x86_64" is already installed.
Package "nifticlib-devel-3.0.1-6.fc45.x86_64" is already installed.
Package "pkgconf-pkg-config-2.5.1-2.fc45.x86_64" is already installed.
Package "python3-3.15.0~rc2-1.fc45.x86_64" is already installed.
Package "zlib-ng-compat-devel-2.3.3-6.fc45.x86_64" is already installed.

Finish: build setup for cat-surface-1.0.30-1.fc45.src.rpm
Start: rpmbuild cat-surface-1.0.30-1.fc45.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1791331200
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.6v9YOQ
Creating(rpmbuild.env): /builddir/build/BUILD/cat-surface-1.0.30-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/cat-surface-1.0.30-build"
  RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "
  RPM_ARCH="x86_64"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="2"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/cat-surface-1.0.30-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="cat-surface"
  RPM_PACKAGE_VERSION="1.0.30"
  RPM_PACKAGE_RELEASE="1.fc45"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.g1MjQS
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ rm -rf CAT-Surface-1.0.30
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/CAT-Surface-1.0.30.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd CAT-Surface-1.0.30
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ cp -p 3rdparty/nifti/nifti1_local.h Include/
+ rm -rf 3rdparty/genus0 3rdparty/zlib 3rdparty/expat 3rdparty/nifti 3rdparty/gifticlib 3rdparty/fftw
+ python3 -
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.RWdrxv
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd CAT-Surface-1.0.30
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force -I m4
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: no need to run autopoint (confirmed)
autoreconf: running: aclocal --force -I m4
autoreconf: running: /usr/bin/autoconf --force
autoreconf: running: /usr/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:6: installing './compile'
configure.ac:8: installing './config.guess'
configure.ac:8: installing './config.sub'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
autoreconf: configure.ac: not running make: --make not given
autoreconf: Leaving directory '.'
+ export 'CPPFLAGS=-I/usr/include/nifti -I/usr/include/gifti'
+ CPPFLAGS='-I/usr/include/nifti -I/usr/include/gifti'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2026-10-08 00:17:58.576000000 +0000
+++ ./configure	2026-10-08 00:17:59.360000000 +0000
@@ -7214,7 +7214,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="$SED -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"\
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -15383,7 +15383,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ mv ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ mv ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
--- ./3rdparty/bicpl-surface/configure.backup	2026-09-27 10:32:18.000000000 +0000
+++ ./3rdparty/bicpl-surface/configure	2026-10-08 00:17:59.382000000 +0000
@@ -1734,7 +1734,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ mv ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
--- ./3rdparty/bicpl-surface/configure.backup	2026-10-08 00:17:59.382000000 +0000
+++ ./3rdparty/bicpl-surface/configure	2026-10-08 00:17:59.399000000 +0000
@@ -6064,7 +6064,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="sed -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"\
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -13063,7 +13063,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors"~' ./ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=x86_64-redhat-linux --host=x86_64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-static --disable-shared
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '135' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for x86_64-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C23 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking build system type... x86_64-redhat-linux-gnu
checking host system type... x86_64-redhat-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for x86_64-redhat-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-redhat-linux-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking for x86_64-redhat-linux-ar... no
checking for ar... ar
checking for archiver @FILE support... @
checking for x86_64-redhat-linux-strip... no
checking for strip... strip
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for x86_64-redhat-linux-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for x86_64-redhat-linux-pkg-config... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for fftw3... yes
checking for expat... yes
checking for zlib... yes
checking for znzopen in -lznz... yes
checking for nifti_image_read in -lniftiio... yes
checking for gifti_read_da_list in -lgiftiio... yes
checking for values.h... yes
checking for malloc.h... yes
checking for library containing clock_gettime... none required
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Progs/Makefile
config.status: creating tests/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
/usr/bin/make  all-recursive
Making all in .
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/colour_def.lo 3rdparty/volume_io/Geometry/colour_def.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/colour_def.c -o 3rdparty/volume_io/Geometry/colour_def.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/colour_def.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/colour_def.c,v 1.6.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/colour.lo 3rdparty/volume_io/Geometry/colour.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/colour.c -o 3rdparty/volume_io/Geometry/colour.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/colour.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/colour.c,v 1.3.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/inverse.lo 3rdparty/volume_io/Geometry/inverse.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/inverse.c -o 3rdparty/volume_io/Geometry/inverse.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/inverse.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/inverse.c,v 1.8.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/gaussian.lo 3rdparty/volume_io/Geometry/gaussian.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/gaussian.c -o 3rdparty/volume_io/Geometry/gaussian.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/gaussian.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/gaussian.c,v 1.8.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/newton.lo 3rdparty/volume_io/Geometry/newton.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/newton.c -o 3rdparty/volume_io/Geometry/newton.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/newton.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/newton.c,v 1.6.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/points.lo 3rdparty/volume_io/Geometry/points.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/points.c -o 3rdparty/volume_io/Geometry/points.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/points.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/points.c,v 1.13.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/splines.lo 3rdparty/volume_io/Geometry/splines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/splines.c -o 3rdparty/volume_io/Geometry/splines.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/splines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/splines.c,v 1.5.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/tensors.lo 3rdparty/volume_io/Geometry/tensors.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/tensors.c -o 3rdparty/volume_io/Geometry/tensors.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/tensors.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/tensors.c,v 1.6.2.1 2004/10/04 20:18:41 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/transforms.lo 3rdparty/volume_io/Geometry/transforms.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/transforms.c -o 3rdparty/volume_io/Geometry/transforms.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Geometry/transforms.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/transforms.c,v 1.19.2.1 2004/10/04 20:18:41 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/alloc.lo 3rdparty/volume_io/Prog_utils/alloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/alloc.c -o 3rdparty/volume_io/Prog_utils/alloc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/alloc.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/alloc.c,v 1.24.2.1 2004/10/04 20:19:21 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/alloc_check.lo 3rdparty/volume_io/Prog_utils/alloc_check.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/alloc_check.c -o 3rdparty/volume_io/Prog_utils/alloc_check.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/alloc_check.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/alloc_check.c,v 1.22.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/arrays.lo 3rdparty/volume_io/Prog_utils/arrays.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/arrays.c -o 3rdparty/volume_io/Prog_utils/arrays.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/arrays.c:16:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   16 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/arrays.c,v 1.3.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/print.lo 3rdparty/volume_io/Prog_utils/print.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/print.c -o 3rdparty/volume_io/Prog_utils/print.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/print.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/print.c,v 1.12.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/progress.lo 3rdparty/volume_io/Prog_utils/progress.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/progress.c -o 3rdparty/volume_io/Prog_utils/progress.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/progress.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/progress.c,v 1.9.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/string.lo 3rdparty/volume_io/Prog_utils/string.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/string.c -o 3rdparty/volume_io/Prog_utils/string.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/string.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/string.c,v 1.9.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/files.lo 3rdparty/volume_io/Prog_utils/files.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/files.c -o 3rdparty/volume_io/Prog_utils/files.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/files.c: In function 'open_file':
3rdparty/volume_io/Prog_utils/files.c:832:14: warning: unused variable 'command_status' [-Wunused-variable]
  832 |     int      command_status;
      |              ^~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c:829:14: warning: unused variable 'command' [-Wunused-variable]
  829 |     char     command[EXTREMELY_LARGE_STRING_SIZE];
      |              ^~~~~~~
3rdparty/volume_io/Prog_utils/files.c:828:15: warning: unused variable 'tmp_name' [-Wunused-variable]
  828 |     char     *tmp_name;
      |               ^~~~~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'input_possibly_quoted_string':
3rdparty/volume_io/Prog_utils/files.c:1515:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
 1515 |            (quoted && ch != quote ||
      |             ~~~~~~~^~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c: At top level:
3rdparty/volume_io/Prog_utils/files.c:27:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   27 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/files.c,v 1.39.2.2 2005/03/31 17:23:34 bert Exp $";
      |             ^~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'print_system_error':
3rdparty/volume_io/Prog_utils/files.c:51:5: warning: 'error' is used uninitialized [-Wuninitialized]
   51 |     print_error( "\nSystem message: %s\n", error );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c:49:13: note: 'error' was declared here
   49 |     char   *error;
      |             ^~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'input_string':
3rdparty/volume_io/Prog_utils/files.c:1410:34: warning: 'ch' may be used uninitialized [-Wmaybe-uninitialized]
 1410 |     if( termination_char != '\n' && ch == '\n' )
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c:1396:13: note: 'ch' was declared here
 1396 |     char    ch;
      |             ^~
In function 'unget_character',
    inlined from 'input_possibly_quoted_string' at 3rdparty/volume_io/Prog_utils/files.c:1524:16:
3rdparty/volume_io/Prog_utils/files.c:1241:9: warning: 'ch' may be used uninitialized [-Wmaybe-uninitialized]
 1241 |     c = ungetc( (int) ch, file );
      |         ^~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'input_possibly_quoted_string':
3rdparty/volume_io/Prog_utils/files.c:1493:14: note: 'ch' was declared here
 1493 |     char     ch, quote;
      |              ^~
3rdparty/volume_io/Prog_utils/files.c:1523:7: warning: 'quoted' may be used uninitialized [-Wmaybe-uninitialized]
 1523 |     if( !quoted )
      |       ^
3rdparty/volume_io/Prog_utils/files.c:1492:14: note: 'quoted' was declared here
 1492 |     BOOLEAN  quoted;
      |              ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/time.lo 3rdparty/volume_io/Prog_utils/time.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/time.c -o 3rdparty/volume_io/Prog_utils/time.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/volume_io/Prog_utils/time.c:38:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   38 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/time.c,v 1.21.2.3 2005/07/13 19:59:19 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/ParseArgv.lo 3rdparty/bicpl-surface/ParseArgv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/ParseArgv.c -o 3rdparty/bicpl-surface/ParseArgv.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/ParseArgv.c: In function 'ParseArgv':
3rdparty/bicpl-surface/ParseArgv.c:173:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  173 |          *((int *) infoPtr->dst) = *((int*)(&infoPtr->src));
      |                                     ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:176:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  176 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:198:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  198 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:221:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  221 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:237:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  237 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c: In function 'PrintUsage':
3rdparty/bicpl-surface/ParseArgv.c:393:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  393 |             nargs = *((int*)(&infoPtr->src));
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:402:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  402 |             nargs = *((int*)(&infoPtr->src));
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:412:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  412 |             nargs = *((int*)(&infoPtr->src));
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c: In function 'ParseArgv':
3rdparty/bicpl-surface/ParseArgv.c:422:39: warning: '%s' directive argument is null [-Wformat-overflow=]
  422 |                   FPRINTF(stderr, " \"%s\"", string);
      |                                       ^~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/build_bintree.lo 3rdparty/bicpl-surface/Data_structures/build_bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/build_bintree.c -o 3rdparty/bicpl-surface/Data_structures/build_bintree.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Data_structures/build_bintree.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/build_bintree.c,v 1.13 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
In function 'split_node',
    inlined from 'subdivide_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:218:9,
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:515:50: warning: 'axis_index' may be used uninitialized [-Wmaybe-uninitialized]
  515 |     max_plane = (Real) limits->limits[axis_index][1];
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:443:26: note: 'axis_index' was declared here
  443 |     int                  axis_index, top, bottom, start_dim, end_dim;
      |                          ^~~~~~~~~~
In function 'split_node',
    inlined from 'subdivide_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:218:9,
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:517:20: warning: 'left_plane' may be used uninitialized [-Wmaybe-uninitialized]
  517 |     if( left_plane - min_plane < max_plane - right_plane )
      |         ~~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:445:26: note: 'left_plane' was declared here
  445 |     Real                 left_plane, right_plane, split_position;
      |                          ^~~~~~~~~~
In function 'split_node',
    inlined from 'subdivide_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:218:9,
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:517:44: warning: 'right_plane' may be used uninitialized [-Wmaybe-uninitialized]
  517 |     if( left_plane - min_plane < max_plane - right_plane )
      |                                  ~~~~~~~~~~^~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:445:38: note: 'right_plane' was declared here
  445 |     Real                 left_plane, right_plane, split_position;
      |                                      ^~~~~~~~~~~
In function 'subdivide_bintree',
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:223:13: warning: 'left_cost' may be used uninitialized [-Wmaybe-uninitialized]
  223 |             insert_in_leaf_queue( &leaf_queue, ptr_to_left_child, left_cost,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  224 |                                   &left_limits );
      |                                   ~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:187:29: note: 'left_cost' was declared here
  187 |     Real                    left_cost, right_cost;
      |                             ^~~~~~~~~
In function 'subdivide_bintree',
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:229:13: warning: 'right_cost' may be used uninitialized [-Wmaybe-uninitialized]
  229 |             insert_in_leaf_queue( &leaf_queue, ptr_to_right_child, right_cost,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  230 |                                   &right_limits );
      |                                   ~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:187:40: note: 'right_cost' was declared here
  187 |     Real                    left_cost, right_cost;
      |                                        ^~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/bintree.lo 3rdparty/bicpl-surface/Data_structures/bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/bintree.c -o 3rdparty/bicpl-surface/Data_structures/bintree.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Data_structures/bintree.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/bintree.c,v 1.10 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/bitlist.lo 3rdparty/bicpl-surface/Data_structures/bitlist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/bitlist.c -o 3rdparty/bicpl-surface/Data_structures/bitlist.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Data_structures/bitlist.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/bitlist.c,v 1.13 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/hash2_table.lo 3rdparty/bicpl-surface/Data_structures/hash2_table.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/hash2_table.c -o 3rdparty/bicpl-surface/Data_structures/hash2_table.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Data_structures/hash2_table.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/hash2_table.c,v 1.4 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/hash_table.lo 3rdparty/bicpl-surface/Data_structures/hash_table.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/hash_table.c -o 3rdparty/bicpl-surface/Data_structures/hash_table.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Data_structures/hash_table.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/hash_table.c,v 1.14 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/object_bintrees.lo 3rdparty/bicpl-surface/Data_structures/object_bintrees.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/object_bintrees.c -o 3rdparty/bicpl-surface/Data_structures/object_bintrees.o
3rdparty/bicpl-surface/Data_structures/object_bintrees.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/object_bintrees.c,v 1.13 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/point_bintree.lo 3rdparty/bicpl-surface/Data_structures/point_bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/point_bintree.c -o 3rdparty/bicpl-surface/Data_structures/point_bintree.o
3rdparty/bicpl-surface/Data_structures/point_bintree.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/point_bintree.c,v 1.10 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/ray_bintree.lo 3rdparty/bicpl-surface/Data_structures/ray_bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/ray_bintree.c -o 3rdparty/bicpl-surface/Data_structures/ray_bintree.o
3rdparty/bicpl-surface/Data_structures/ray_bintree.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/ray_bintree.c,v 1.19 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/approx_sqrt.lo 3rdparty/bicpl-surface/Geometry/approx_sqrt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/approx_sqrt.c -o 3rdparty/bicpl-surface/Geometry/approx_sqrt.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/skiplist.lo 3rdparty/bicpl-surface/Data_structures/skiplist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/skiplist.c -o 3rdparty/bicpl-surface/Data_structures/skiplist.o
3rdparty/bicpl-surface/Data_structures/skiplist.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/skiplist.c,v 1.13 2005/08/17 22:31:13 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/clip_3d.lo 3rdparty/bicpl-surface/Geometry/clip_3d.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/clip_3d.c -o 3rdparty/bicpl-surface/Geometry/clip_3d.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/closest_point.lo 3rdparty/bicpl-surface/Geometry/closest_point.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/closest_point.c -o 3rdparty/bicpl-surface/Geometry/closest_point.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/closest_point.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/closest_point.c,v 1.10 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/curvature.lo 3rdparty/bicpl-surface/Geometry/curvature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/curvature.c -o 3rdparty/bicpl-surface/Geometry/curvature.o
3rdparty/bicpl-surface/Geometry/curvature.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/curvature.c,v 1.22 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/flatten.lo 3rdparty/bicpl-surface/Geometry/flatten.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/flatten.c -o 3rdparty/bicpl-surface/Geometry/flatten.o
3rdparty/bicpl-surface/Geometry/flatten.c:17:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   17 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/flatten.c,v 1.6 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/geometry.lo 3rdparty/bicpl-surface/Geometry/geometry.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/geometry.c -o 3rdparty/bicpl-surface/Geometry/geometry.o
3rdparty/bicpl-surface/Geometry/geometry.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/geometry.c,v 1.21 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/geodesic_distance.lo 3rdparty/bicpl-surface/Geometry/geodesic_distance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/geodesic_distance.c -o 3rdparty/bicpl-surface/Geometry/geodesic_distance.o
3rdparty/bicpl-surface/Geometry/geodesic_distance.c:16:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   16 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/geodesic_distance.c,v 1.9 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/line_circle.lo 3rdparty/bicpl-surface/Geometry/line_circle.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/line_circle.c -o 3rdparty/bicpl-surface/Geometry/line_circle.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/line_circle.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/line_circle.c,v 1.12 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/intersect.lo 3rdparty/bicpl-surface/Geometry/intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/intersect.c -o 3rdparty/bicpl-surface/Geometry/intersect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/intersect.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/intersect.c,v 1.13 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/path_surface.lo 3rdparty/bicpl-surface/Geometry/path_surface.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/path_surface.c -o 3rdparty/bicpl-surface/Geometry/path_surface.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/path_surface.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/path_surface.c,v 1.8 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
In function 'follow_path',
    inlined from 'find_path_between_polygons' at 3rdparty/bicpl-surface/Geometry/path_surface.c:150:9:
3rdparty/bicpl-surface/Geometry/path_surface.c:216:26: warning: 'neighbour' may be used uninitialized [-Wmaybe-uninitialized]
  216 |         path[path_index] = current_polygon;
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/path_surface.c: In function 'find_path_between_polygons':
3rdparty/bicpl-surface/Geometry/path_surface.c:189:50: note: 'neighbour' was declared here
  189 |     int   n, start_index, end_index, path_index, neighbour, current_polygon;
      |                                                  ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/map_polygons.lo 3rdparty/bicpl-surface/Geometry/map_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/map_polygons.c -o 3rdparty/bicpl-surface/Geometry/map_polygons.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/map_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/map_polygons.c,v 1.14 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/platonics.lo 3rdparty/bicpl-surface/Geometry/platonics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/platonics.c -o 3rdparty/bicpl-surface/Geometry/platonics.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/platonics.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/platonics.c,v 1.5 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.lo 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.c -o 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/points.lo 3rdparty/bicpl-surface/Geometry/points.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/points.c -o 3rdparty/bicpl-surface/Geometry/points.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/points.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/points.c,v 1.9 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/poly_dist.lo 3rdparty/bicpl-surface/Geometry/poly_dist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/poly_dist.c -o 3rdparty/bicpl-surface/Geometry/poly_dist.o
3rdparty/bicpl-surface/Geometry/poly_dist.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/poly_dist.c,v 1.10 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/polygon_sphere.lo 3rdparty/bicpl-surface/Geometry/polygon_sphere.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/polygon_sphere.c -o 3rdparty/bicpl-surface/Geometry/polygon_sphere.o
3rdparty/bicpl-surface/Geometry/polygon_sphere.c: In function 'half_sample_sphere_tessellation':
3rdparty/bicpl-surface/Geometry/polygon_sphere.c:547:29: warning: missing braces around initializer [-Wmissing-braces]
  547 |     static Point   centre = { 0.0f, 0.0f, 0.0f };
      |                             ^
      |                               {                }
3rdparty/bicpl-surface/Geometry/polygon_sphere.c: At top level:
3rdparty/bicpl-surface/Geometry/polygon_sphere.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/polygon_sphere.c,v 1.17 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/ray_intersect.lo 3rdparty/bicpl-surface/Geometry/ray_intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/ray_intersect.c -o 3rdparty/bicpl-surface/Geometry/ray_intersect.o
3rdparty/bicpl-surface/Geometry/ray_intersect.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/ray_intersect.c,v 1.32 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
3rdparty/bicpl-surface/Geometry/ray_intersect.c: In function 'get_intersect_directions':
3rdparty/bicpl-surface/Geometry/ray_intersect.c:63:11: warning: 'd' may be used uninitialized [-Wmaybe-uninitialized]
   63 |     return( d );
      |           ^
3rdparty/bicpl-surface/Geometry/ray_intersect.c:50:11: note: 'd' was declared here
   50 |     Real *d;
      |           ^
3rdparty/bicpl-surface/Geometry/ray_intersect.c: In function 'intersect_ray_object':
3rdparty/bicpl-surface/Geometry/ray_intersect.c:949:7: warning: 'found' may be used uninitialized [-Wmaybe-uninitialized]
  949 |     if( found )
      |       ^
3rdparty/bicpl-surface/Geometry/ray_intersect.c:925:27: note: 'found' was declared here
  925 |     BOOLEAN               found;
      |                           ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/segment_polygons.lo 3rdparty/bicpl-surface/Geometry/segment_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/segment_polygons.c -o 3rdparty/bicpl-surface/Geometry/segment_polygons.o
3rdparty/bicpl-surface/Geometry/segment_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/segment_polygons.c,v 1.9 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/smooth_curvature.lo 3rdparty/bicpl-surface/Geometry/smooth_curvature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/smooth_curvature.c -o 3rdparty/bicpl-surface/Geometry/smooth_curvature.o
3rdparty/bicpl-surface/Geometry/smooth_curvature.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/smooth_curvature.c,v 1.17 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/smooth_lines.lo 3rdparty/bicpl-surface/Geometry/smooth_lines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/smooth_lines.c -o 3rdparty/bicpl-surface/Geometry/smooth_lines.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/smooth_lines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/smooth_lines.c,v 1.12 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/smooth_polygons.lo 3rdparty/bicpl-surface/Geometry/smooth_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/smooth_polygons.c -o 3rdparty/bicpl-surface/Geometry/smooth_polygons.o
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/smooth_polygons.c,v 1.13 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
In file included from ./3rdparty/volume_io/Include/volume_io.h:46,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ./3rdparty/bicpl-surface/Include/bicpl_internal.h:12,
                 from 3rdparty/bicpl-surface/Geometry/smooth_polygons.c:15:
3rdparty/bicpl-surface/Geometry/smooth_polygons.c: In function 'update_point_position':
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_normal.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:55: note: 'unit_normal.coords[0]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                                       ^~~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_normal.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:55: note: 'unit_normal.coords[1]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                                       ^~~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_normal.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:55: note: 'unit_normal.coords[2]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                                       ^~~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_delta.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:43: note: 'unit_delta.coords[0]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                           ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_delta.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:43: note: 'unit_delta.coords[1]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                           ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_delta.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:43: note: 'unit_delta.coords[2]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                           ^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/solve_plane.lo 3rdparty/bicpl-surface/Geometry/solve_plane.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/solve_plane.c -o 3rdparty/bicpl-surface/Geometry/solve_plane.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/solve_plane.c:17:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   17 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/solve_plane.c,v 1.14 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/subdivide_lines.lo 3rdparty/bicpl-surface/Geometry/subdivide_lines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/subdivide_lines.c -o 3rdparty/bicpl-surface/Geometry/subdivide_lines.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/subdivide_lines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/subdivide_lines.c,v 1.11 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/surface_area.lo 3rdparty/bicpl-surface/Geometry/surface_area.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/surface_area.c -o 3rdparty/bicpl-surface/Geometry/surface_area.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/surface_area.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/surface_area.c,v 1.8 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/subdivide_polygons.lo 3rdparty/bicpl-surface/Geometry/subdivide_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/subdivide_polygons.c -o 3rdparty/bicpl-surface/Geometry/subdivide_polygons.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/subdivide_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/subdivide_polygons.c,v 1.19 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/tetrahedrons.lo 3rdparty/bicpl-surface/Geometry/tetrahedrons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/tetrahedrons.c -o 3rdparty/bicpl-surface/Geometry/tetrahedrons.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/tetrahedrons.c: In function 'half_sample_tetrahedral_tessellation':
3rdparty/bicpl-surface/Geometry/tetrahedrons.c:217:36: warning: missing braces around initializer [-Wmissing-braces]
  217 |     static  Point   dummy_centre = { 0.0f, 0.0f, 0.0f };
      |                                    ^
      |                                      {                }
3rdparty/bicpl-surface/Geometry/tetrahedrons.c: At top level:
3rdparty/bicpl-surface/Geometry/tetrahedrons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/tetrahedrons.c,v 1.15 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/tubes.lo 3rdparty/bicpl-surface/Geometry/tubes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/tubes.c -o 3rdparty/bicpl-surface/Geometry/tubes.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Geometry/tubes.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/tubes.c,v 1.7 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.lo 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c -o 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c: In function 'get_polygons':
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:35:11: warning: 'n_polygons' may be used uninitialized [-Wmaybe-uninitialized]
   35 |     return( n_polygons );
      |           ^
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:14:19: note: 'n_polygons' was declared here
   14 |     int           n_polygons;
      |                   ^~~~~~~~~~
In file included from ./3rdparty/volume_io/Include/volume_io.h:40,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ./3rdparty/bicpl-surface/Include/bicpl_internal.h:12,
                 from 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:1:
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c: In function 'get_isosurface_point':
./3rdparty/volume_io/Include/volume_io/basic.h:98:52: warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized]
   98 | #define  INTERPOLATE( alpha, a, b ) ((a) + (alpha) * ((b) - (a)))
      |                                            ~~~~~~~~^~~~~~~~~~~~~
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:96:21: note: 'alpha' was declared here
   96 |     Real            alpha, val1, val2;
      |                     ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.c -o 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.c -o 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.lo 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c -o 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c: In function 'create_case':
3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c:107:24: warning: 'best_ord' may be used uninitialized [-Wmaybe-uninitialized]
  107 |     int     ord, rank, best_ord, best_rank, vertex;
      |                        ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/gaussian.lo 3rdparty/bicpl-surface/Numerical/gaussian.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/gaussian.c -o 3rdparty/bicpl-surface/Numerical/gaussian.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/gaussian.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/gaussian.c,v 1.8 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/amoeba.lo 3rdparty/bicpl-surface/Numerical/amoeba.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/amoeba.c -o 3rdparty/bicpl-surface/Numerical/amoeba.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/amoeba.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/amoeba.c,v 1.15 2005/08/17 22:28:58 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/gradient_minimize.lo 3rdparty/bicpl-surface/Numerical/gradient_minimize.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/gradient_minimize.c -o 3rdparty/bicpl-surface/Numerical/gradient_minimize.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/gradient_minimize.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/gradient_minimize.c,v 1.6 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/histogram.lo 3rdparty/bicpl-surface/Numerical/histogram.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/histogram.c -o 3rdparty/bicpl-surface/Numerical/histogram.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/histogram.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/histogram.c,v 1.12 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/least_squares.lo 3rdparty/bicpl-surface/Numerical/least_squares.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/least_squares.c -o 3rdparty/bicpl-surface/Numerical/least_squares.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/least_squares.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/least_squares.c,v 1.9 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/matrix_svd.lo 3rdparty/bicpl-surface/Numerical/matrix_svd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/matrix_svd.c -o 3rdparty/bicpl-surface/Numerical/matrix_svd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/matrix_svd.c: In function 'singular_value_decomposition':
3rdparty/bicpl-surface/Numerical/matrix_svd.c:69:8: warning: unused variable 'temp' [-Wunused-variable]
   69 |   Real temp;
      |        ^~~~
3rdparty/bicpl-surface/Numerical/matrix_svd.c: At top level:
3rdparty/bicpl-surface/Numerical/matrix_svd.c:25:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   25 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/matrix_svd.c,v 1.9 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/minimize_lsq_include.c:173:16: warning: 'private_minimize_lsq' defined but not used [-Wunused-function]
  173 | static  Real   private_minimize_lsq(
      |                ^~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/minimize_lsq.c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/numerical.lo 3rdparty/bicpl-surface/Numerical/numerical.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/numerical.c -o 3rdparty/bicpl-surface/Numerical/numerical.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/numerical.c:24:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   24 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/numerical.c,v 1.26 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/quadratic.lo 3rdparty/bicpl-surface/Numerical/quadratic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/quadratic.c -o 3rdparty/bicpl-surface/Numerical/quadratic.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/real_quadratic.lo 3rdparty/bicpl-surface/Numerical/real_quadratic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/real_quadratic.c -o 3rdparty/bicpl-surface/Numerical/real_quadratic.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/statistics.lo 3rdparty/bicpl-surface/Numerical/statistics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/statistics.c -o 3rdparty/bicpl-surface/Numerical/statistics.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Numerical/statistics.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/statistics.c,v 1.15 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/t_stat.lo 3rdparty/bicpl-surface/Numerical/t_stat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/t_stat.c -o 3rdparty/bicpl-surface/Numerical/t_stat.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/coalesce.lo 3rdparty/bicpl-surface/Objects/coalesce.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/coalesce.c -o 3rdparty/bicpl-surface/Objects/coalesce.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/colours.lo 3rdparty/bicpl-surface/Objects/colours.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/colours.c -o 3rdparty/bicpl-surface/Objects/colours.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/colours.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/colours.c,v 1.11 2005/08/17 22:28:26 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/graphics_io.lo 3rdparty/bicpl-surface/Objects/graphics_io.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/graphics_io.c -o 3rdparty/bicpl-surface/Objects/graphics_io.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/graphics_io.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/graphics_io.c,v 1.9 2005/08/17 22:28:26 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/markers.lo 3rdparty/bicpl-surface/Objects/markers.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/markers.c -o 3rdparty/bicpl-surface/Objects/markers.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/markers.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/markers.c,v 1.5 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/lines.lo 3rdparty/bicpl-surface/Objects/lines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/lines.c -o 3rdparty/bicpl-surface/Objects/lines.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/lines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/lines.c,v 1.20 2005/08/17 22:28:26 bert Exp $";
      |             ^~~~~
3rdparty/bicpl-surface/Objects/lines.c: In function 'get_lines_arc_point':
3rdparty/bicpl-surface/Objects/lines.c:345:31: warning: 'p1' may be used uninitialized [-Wmaybe-uninitialized]
  345 |         *point = lines->points[p1];
      |                               ^
3rdparty/bicpl-surface/Objects/lines.c:307:27: note: 'p1' was declared here
  307 |     int      line, i, p0, p1, size;
      |                           ^~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/models.lo 3rdparty/bicpl-surface/Objects/models.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/models.c -o 3rdparty/bicpl-surface/Objects/models.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/models.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/models.c,v 1.11 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/object_io.lo 3rdparty/bicpl-surface/Objects/object_io.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/object_io.c -o 3rdparty/bicpl-surface/Objects/object_io.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/object_io.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/object_io.c,v 1.30 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/objects.lo 3rdparty/bicpl-surface/Objects/objects.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/objects.c -o 3rdparty/bicpl-surface/Objects/objects.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/objects.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/objects.c,v 1.24 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/pixels.lo 3rdparty/bicpl-surface/Objects/pixels.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/pixels.c -o 3rdparty/bicpl-surface/Objects/pixels.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/pixels.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/pixels.c,v 1.27 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/poly_neighs.lo 3rdparty/bicpl-surface/Objects/poly_neighs.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/poly_neighs.c -o 3rdparty/bicpl-surface/Objects/poly_neighs.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/poly_neighs.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/poly_neighs.c,v 1.23 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/quadmesh.lo 3rdparty/bicpl-surface/Objects/quadmesh.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/quadmesh.c -o 3rdparty/bicpl-surface/Objects/quadmesh.o
3rdparty/bicpl-surface/Objects/quadmesh.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/quadmesh.c,v 1.21 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/rgb_lookup.lo 3rdparty/bicpl-surface/Objects/rgb_lookup.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/rgb_lookup.c -o 3rdparty/bicpl-surface/Objects/rgb_lookup.o
3rdparty/bicpl-surface/Objects/rgb_lookup.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/rgb_lookup.c,v 1.13 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/tag_objects.lo 3rdparty/bicpl-surface/Objects/tag_objects.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/tag_objects.c -o 3rdparty/bicpl-surface/Objects/tag_objects.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/tag_objects.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/tag_objects.c,v 1.8 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/polygons.lo 3rdparty/bicpl-surface/Objects/polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/polygons.c -o 3rdparty/bicpl-surface/Objects/polygons.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/polygons.c,v 1.44 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/text.lo 3rdparty/bicpl-surface/Objects/text.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/text.c -o 3rdparty/bicpl-surface/Objects/text.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Objects/text.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/text.c,v 1.11 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Prog_utils/arguments.lo 3rdparty/bicpl-surface/Prog_utils/arguments.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Prog_utils/arguments.c -o 3rdparty/bicpl-surface/Prog_utils/arguments.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Prog_utils/arguments.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Prog_utils/arguments.c,v 1.14 2005/08/17 22:27:56 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Prog_utils/globals.lo 3rdparty/bicpl-surface/Prog_utils/globals.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Prog_utils/globals.c -o 3rdparty/bicpl-surface/Prog_utils/globals.o
3rdparty/bicpl-surface/Prog_utils/globals.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Prog_utils/globals.c,v 1.16 2005/08/17 22:27:56 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Prog_utils/time.lo 3rdparty/bicpl-surface/Prog_utils/time.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Prog_utils/time.c -o 3rdparty/bicpl-surface/Prog_utils/time.o
3rdparty/bicpl-surface/Prog_utils/time.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Prog_utils/time.c,v 1.8 2005/08/17 22:27:56 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/compute_tps.lo 3rdparty/bicpl-surface/Transforms/compute_tps.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/compute_tps.c -o 3rdparty/bicpl-surface/Transforms/compute_tps.o
3rdparty/bicpl-surface/Transforms/compute_tps.c:35:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   35 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/compute_tps.c,v 1.13 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/compute_xfm.lo 3rdparty/bicpl-surface/Transforms/compute_xfm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/compute_xfm.c -o 3rdparty/bicpl-surface/Transforms/compute_xfm.o
3rdparty/bicpl-surface/Transforms/compute_xfm.c:99:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   99 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/compute_xfm.c,v 1.18 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/matrix_basics.lo 3rdparty/bicpl-surface/Transforms/matrix_basics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/matrix_basics.c -o 3rdparty/bicpl-surface/Transforms/matrix_basics.o
3rdparty/bicpl-surface/Transforms/matrix_basics.c:30:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   30 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/matrix_basics.c,v 1.17 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/optimize.lo 3rdparty/bicpl-surface/Transforms/optimize.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/optimize.c -o 3rdparty/bicpl-surface/Transforms/optimize.o
3rdparty/bicpl-surface/Transforms/optimize.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/optimize.c,v 1.16 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.lo 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.c -o 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Transforms/rotmat_to_ang.c:84:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   84 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/rotmat_to_ang.c,v 1.21 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/procrustes.lo 3rdparty/bicpl-surface/Transforms/procrustes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/procrustes.c -o 3rdparty/bicpl-surface/Transforms/procrustes.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Transforms/procrustes.c:31:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   31 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/procrustes.c,v 1.15 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/transform_io.lo 3rdparty/bicpl-surface/Transforms/transform_io.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/transform_io.c -o 3rdparty/bicpl-surface/Transforms/transform_io.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Transforms/transform_io.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/transform_io.c,v 1.9 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.lo 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.c -o 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Transforms/safe_compute_xfm.c:85:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   85 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/safe_compute_xfm.c,v 1.13 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.lo 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.c -o 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/d_sign.lo 3rdparty/bicpl-surface/bicpl_clapack/d_sign.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/d_sign.c -o 3rdparty/bicpl-surface/bicpl_clapack/d_sign.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/transforms.lo 3rdparty/bicpl-surface/Transforms/transforms.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/transforms.c -o 3rdparty/bicpl-surface/Transforms/transforms.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/Transforms/transforms.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/transforms.c,v 1.14 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
In file included from ./3rdparty/volume_io/Include/volume_io.h:46,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ./3rdparty/bicpl-surface/Include/bicpl_internal.h:12,
                 from 3rdparty/bicpl-surface/Transforms/transforms.c:15:
3rdparty/bicpl-surface/Transforms/transforms.c: In function 'set_transform_x_and_z_axes':
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'n_z' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
3rdparty/bicpl-surface/Transforms/transforms.c:75:13: note: 'n_z' declared here
   75 |     Vector  n_z, n_y, n_x;
      |             ^~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:70:53: warning: 'n_z' may be used uninitialized [-Wmaybe-uninitialized]
   70 | #define  Point_coord( point, coord ) ((point).coords[coord])
3rdparty/bicpl-surface/Transforms/transforms.c:75:13: note: 'n_z' declared here
   75 |     Vector  n_z, n_y, n_x;
      |             ^~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'n_z' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
3rdparty/bicpl-surface/Transforms/transforms.c:75:13: note: 'n_z' declared here
   75 |     Vector  n_z, n_y, n_x;
      |             ^~~
3rdparty/bicpl-surface/Transforms/transforms.c: In function 'make_rotation_about_axis':
3rdparty/bicpl-surface/Transforms/transforms.c:276:13: warning: 'unit_axis.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
  276 |     Vector  unit_axis;
      |             ^~~~~~~~~
3rdparty/bicpl-surface/Transforms/transforms.c:276:13: warning: 'unit_axis.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
3rdparty/bicpl-surface/Transforms/transforms.c:286:7: warning: 'unit_axis.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
  286 |     z = (Real) Vector_z( unit_axis );
3rdparty/bicpl-surface/Transforms/transforms.c:276:13: note: 'unit_axis.coords[2]' was declared here
  276 |     Vector  unit_axis;
      |             ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dcopy.lo 3rdparty/bicpl-surface/bicpl_clapack/dcopy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dcopy.c -o 3rdparty/bicpl-surface/bicpl_clapack/dcopy.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.o
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c: In function 'bicpl_dbdsqr_':
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:235:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  235 |     } else if (*ncvt == 0 && *ldvt < 1 || *ncvt > 0 && *ldvt < max(1,*n)) {
      |                ~~~~~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:239:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  239 |     } else if (*ncc == 0 && *ldc < 1 || *ncc > 0 && *ldc < max(1,*n)) {
      |                ~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:486:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  486 |                 d__1)) || tol < 0. && (d__3 = e[m - 1], abs(d__3)) <= thresh)
      |                           ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:519:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  519 |                 ) || tol < 0. && (d__3 = e[ll], abs(d__3)) <= thresh) {
      |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:71:23: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable=]
   71 |     static doublereal sminlo;
      |                       ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemm.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgemm.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemm.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dgemm.c: In function 'bicpl_dgemm':
3rdparty/bicpl-surface/bicpl_clapack/dgemm.c:165:57: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  165 |     if (*m == 0 || *n == 0 || (*alpha == 0. || *k == 0) && *beta == 1.) {
      |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgemm.c:16:31: warning: variable 'ncola' set but not used [-Wunused-but-set-variable=]
   16 |     static integer i__, j, l, ncola;
      |                               ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemv.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgemv.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemv.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dgemv.c: In function 'bicpl_dgemv':
3rdparty/bicpl-surface/bicpl_clapack/dgemv.c:113:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  113 |     if (*m == 0 || *n == 0 || *alpha == 0. && *beta == 1.) {
      |                               ~~~~~~~~~~~~~^~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dger.lo 3rdparty/bicpl-surface/bicpl_clapack/dger.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dger.c -o 3rdparty/bicpl-surface/bicpl_clapack/dger.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.lo 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlamch.lo 3rdparty/bicpl-surface/bicpl_clapack/dlamch.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlamch.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlamch.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c: In function 'dlamc2_':
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c:413:20: warning: unused variable 'c__1' [-Wunused-variable]
  413 |     static integer c__1 = 1;
      |                    ^~~~
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c: In function 'dlamc4_':
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c:723:13: warning: variable 'i__1' set but not used [-Wunused-but-set-variable=]
  723 |     integer i__1;
      |             ^~~~
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c: In function 'dlamc5_':
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c:838:13: warning: variable 'i__1' set but not used [-Wunused-but-set-variable=]
  838 |     integer i__1;
      |             ^~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlange.lo 3rdparty/bicpl-surface/bicpl_clapack/dlange.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlange.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlange.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarf.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarf.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarf.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarft.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarft.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarft.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarft.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.lo 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.o
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c: In function 'bicpl_dgesvd_':
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:252:62: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  252 |     } else if (! (wntva || wntvs || wntvo || wntvn) || wntvo && wntuo) {
      |                                                        ~~~~~~^~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:260:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  260 |     } else if (*ldu < 1 || wntuas && *ldu < *m) {
      |                            ~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:262:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  262 |     } else if (*ldvt < 1 || wntva && *ldvt < *n || wntvs && *ldvt < minmn) {
      |                             ~~~~~~^~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:262:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  262 |     } else if (*ldvt < 1 || wntva && *ldvt < *n || wntvs && *ldvt < minmn) {
      |                                                    ~~~~~~^~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlas2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlas2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlas2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlas2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlartg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlartg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlartg.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlartg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlaset.lo 3rdparty/bicpl-surface/bicpl_clapack/dlaset.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlaset.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlaset.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlascl.lo 3rdparty/bicpl-surface/bicpl_clapack/dlascl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlascl.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlascl.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c: In function 'bicpl_dlascl_':
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:125:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  125 |     } else if (*n < 0 || itype == 4 && *n != *m || itype == 5 && *n != *m) {
      |                          ~~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:125:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  125 |     } else if (*n < 0 || itype == 4 && *n != *m || itype == 5 && *n != *m) {
      |                                                    ~~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:137:76: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  137 |             if (*ku < 0 || *ku > max(i__1,0) || (itype == 4 || itype == 5) &&
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
  138 |                     *kl != *ku) {
      |                     ~~~~~~~~~~                                              
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:140:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  140 |             } else if (itype == 4 && *lda < *kl + 1 || itype == 5 && *lda < *
      |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:141:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  141 |                     ku + 1 || itype == 6 && *lda < (*kl << 1) + *ku + 1) {
      |                               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasr.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlassq.lo 3rdparty/bicpl-surface/bicpl_clapack/dlassq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlassq.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlassq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.lo 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c: In function 'bicpl_dorgbr_':
3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c:139:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  139 |     } else if (*n < 0 || wantq && (*n > *m || *n < min(*m,*k)) || ! wantq && (
      |                          ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c:139:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  139 |     } else if (*n < 0 || wantq && (*n > *m || *n < min(*m,*k)) || ! wantq && (
      |                                                                   ~~~~~~~~^~~~
  140 |             *m > *n || *m < min(*n,*k))) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~                                    
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorglq.lo 3rdparty/bicpl-surface/bicpl_clapack/dorglq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorglq.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorglq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c: In function 'bicpl_dorm2r_':
3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c:162:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  162 |     if (left && ! notran || ! left && notran) {
      |         ~~~~~^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorml2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorml2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorml2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorml2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dorml2.c: In function 'bicpl_dorml2_':
3rdparty/bicpl-surface/bicpl_clapack/dorml2.c:158:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  158 |     if (left && notran || ! left && ! notran) {
      |         ~~~~~^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dormbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dormbr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dormbr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dormbr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dormbr.c: In function 'bicpl_dormbr_':
3rdparty/bicpl-surface/bicpl_clapack/dormbr.c:198:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  198 |         if (applyq && *lda < max(1,nq) || ! applyq && *lda < max(i__1,i__2)) {
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dormlq.lo 3rdparty/bicpl-surface/bicpl_clapack/dormlq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dormlq.c -o 3rdparty/bicpl-surface/bicpl_clapack/dormlq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dormlq.c: In function 'bicpl_dormlq_':
3rdparty/bicpl-surface/bicpl_clapack/dormlq.c:247:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  247 |         if (left && notran || ! left && ! notran) {
      |             ~~~~~^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dormqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dormqr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dormqr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dormqr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/dormqr.c: In function 'bicpl_dormqr_':
3rdparty/bicpl-surface/bicpl_clapack/dormqr.c:245:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  245 |         if (left && ! notran || ! left && notran) {
      |             ~~~~~^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/drot.lo 3rdparty/bicpl-surface/bicpl_clapack/drot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/drot.c -o 3rdparty/bicpl-surface/bicpl_clapack/drot.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dscal.lo 3rdparty/bicpl-surface/bicpl_clapack/dscal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dscal.c -o 3rdparty/bicpl-surface/bicpl_clapack/dscal.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dswap.lo 3rdparty/bicpl-surface/bicpl_clapack/dswap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dswap.c -o 3rdparty/bicpl-surface/bicpl_clapack/dswap.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/exit_.lo 3rdparty/bicpl-surface/bicpl_clapack/exit_.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/exit_.c -o 3rdparty/bicpl-surface/bicpl_clapack/exit_.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.lo 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.c -o 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/lsame.lo 3rdparty/bicpl-surface/bicpl_clapack/lsame.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/lsame.c -o 3rdparty/bicpl-surface/bicpl_clapack/lsame.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/lsame.c: In function 'bicpl_lsame_':
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:72:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   72 |         if (inta >= 129 && inta <= 137 || inta >= 145 && inta <= 153 || inta
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:73:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   72 |         if (inta >= 129 && inta <= 137 || inta >= 145 && inta <= 153 || inta
      |                                                                         ~~~~
   73 |                 >= 162 && inta <= 169) {
      |                 ~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:76:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   76 |         if (intb >= 129 && intb <= 137 || intb >= 145 && intb <= 153 || intb
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:77:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   76 |         if (intb >= 129 && intb <= 137 || intb >= 145 && intb <= 153 || intb
      |                                                                         ~~~~
   77 |                 >= 162 && intb <= 169) {
      |                 ~~~~~~~^~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.lo 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c -o 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c: In function 'bicpl_ilaenv_':
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:173:23: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  173 |         if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >= 162 &&
      |             ~~~~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:173:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  173 |         if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >= 162 &&
      |                                                                 ~~~~~~~~~~^~
  174 |                 ic <= 169) {
      |                 ~~~~~~~~~                                                  
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:178:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  178 |                 if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >=
      |                     ~~~~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:179:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  178 |                 if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >=
      |                                                                         ~~~~~
  179 |                         162 && ic <= 169) {
      |                         ~~~~^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_di.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_di.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/pow_di.c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_di.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cat.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/s_cat.c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cat.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/s_copy.lo 3rdparty/bicpl-surface/bicpl_clapack/s_copy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/s_copy.c -o 3rdparty/bicpl-surface/bicpl_clapack/s_copy.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/xerbla.lo 3rdparty/bicpl-surface/bicpl_clapack/xerbla.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/xerbla.c -o 3rdparty/bicpl-surface/bicpl_clapack/xerbla.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/FST_semi_fly.lo 3rdparty/s2kit10/FST_semi_fly.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/FST_semi_fly.c -o 3rdparty/s2kit10/FST_semi_fly.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
3rdparty/s2kit10/FST_semi_fly.c: In function 'Conv2Sphere_semi_fly':
3rdparty/s2kit10/FST_semi_fly.c:861:7: warning: variable 'size' set but not used [-Wunused-but-set-variable=]
  861 |   int size ;
      |       ^~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/nii2mesh/quadric.lo 3rdparty/nii2mesh/quadric.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/nii2mesh/quadric.c -o 3rdparty/nii2mesh/quadric.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/makeweights.lo 3rdparty/s2kit10/makeweights.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/makeweights.c -o 3rdparty/s2kit10/makeweights.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/cospmls.lo 3rdparty/s2kit10/cospmls.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/cospmls.c -o 3rdparty/s2kit10/cospmls.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/pmls.lo 3rdparty/s2kit10/pmls.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/pmls.c -o 3rdparty/s2kit10/pmls.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/naive_synthesis.lo 3rdparty/s2kit10/naive_synthesis.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/naive_synthesis.c -o 3rdparty/s2kit10/naive_synthesis.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/seminaive.lo 3rdparty/s2kit10/seminaive.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/seminaive.c -o 3rdparty/s2kit10/seminaive.o
3rdparty/s2kit10/seminaive.c: In function 'SemiNaiveReduced':
3rdparty/s2kit10/seminaive.c:275:10: warning: variable 'd_bw' set but not used [-Wunused-but-set-variable=]
  275 |   double d_bw;
      |          ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/primitive.lo 3rdparty/s2kit10/primitive.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/primitive.c -o 3rdparty/s2kit10/primitive.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_CorrectThicknessFolding.lo Lib/CAT_CorrectThicknessFolding.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_CorrectThicknessFolding.c -o Lib/CAT_CorrectThicknessFolding.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_ROIStats.lo Lib/CAT_ROIStats.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_ROIStats.c -o Lib/CAT_ROIStats.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Vol2SurfUtils.lo Lib/CAT_Vol2SurfUtils.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Vol2SurfUtils.c -o Lib/CAT_Vol2SurfUtils.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_WarpDemons.lo Lib/CAT_WarpDemons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_WarpDemons.c -o Lib/CAT_WarpDemons.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_VolPbt.lo Lib/CAT_VolPbt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_VolPbt.c -o Lib/CAT_VolPbt.o
Lib/CAT_VolPbt.c: In function 'CAT_VolComputePbt':
Lib/CAT_VolPbt.c:516:16: warning: variable 'ramp_vox' set but not used [-Wunused-but-set-variable=]
  516 |         double ramp_vox = 0.0;
      |                ^~~~~~~~
Lib/CAT_VolPbt.c: In function 'projection_based_thickness':
Lib/CAT_VolPbt.c:1235:17: warning: unused variable 'CSFDi' [-Wunused-variable]
 1235 |     float GMTi, CSFDi;
      |                 ^~~~~
Lib/CAT_VolPbt.c:1235:11: warning: unused variable 'GMTi' [-Wunused-variable]
 1235 |     float GMTi, CSFDi;
      |           ^~~~
Lib/CAT_VolPbt.c:1234:19: warning: unused variable 'DI' [-Wunused-variable]
 1234 |     float DN[sN], DI[sN], GMTN[sN], WMDN[sN], SEGN[sN], DNm;
      |                   ^~
Lib/CAT_VolPbt.c:1234:11: warning: unused variable 'DN' [-Wunused-variable]
 1234 |     float DN[sN], DI[sN], GMTN[sN], WMDN[sN], SEGN[sN], DNm;
      |           ^~
Lib/CAT_VolPbt.c: In function 'blood_vessel_correction_pve_float':
Lib/CAT_VolPbt.c:1519:53: warning: unused variable 'local_replace' [-Wunused-variable]
 1519 |     float *F, *YwmA, *YwmB, *Ywm, *Yd, *Yp0s, *Ynn, local_replace;
      |                                                     ^~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_PpmSulci.lo Lib/CAT_PpmSulci.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_PpmSulci.c -o Lib/CAT_PpmSulci.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Sheetness.lo Lib/CAT_Sheetness.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Sheetness.c -o Lib/CAT_Sheetness.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_AverageSurf.lo Lib/CAT_AverageSurf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_AverageSurf.c -o Lib/CAT_AverageSurf.o
Lib/CAT_AverageSurf.c: In function 'CAT_SurfComputeRMS':
Lib/CAT_AverageSurf.c:99:12: warning: unused variable 'sum_sq' [-Wunused-variable]
   99 |     double sum_sq;
      |            ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Calc.lo Lib/CAT_Calc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Calc.c -o Lib/CAT_Calc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_AverageValues.lo Lib/CAT_AverageValues.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_AverageValues.c -o Lib/CAT_AverageValues.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfPialWhite.lo Lib/CAT_SurfPialWhite.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfPialWhite.c -o Lib/CAT_SurfPialWhite.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfLaplacian.lo Lib/CAT_SurfLaplacian.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfLaplacian.c -o Lib/CAT_SurfLaplacian.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfPialProfile.lo Lib/CAT_SurfPialProfile.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfPialProfile.c -o Lib/CAT_SurfPialProfile.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_GlmFormula.lo Lib/CAT_GlmFormula.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_GlmFormula.c -o Lib/CAT_GlmFormula.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Math.lo Lib/CAT_Math.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Math.c -o Lib/CAT_Math.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Math.c: In function 'pinv':
Lib/CAT_Math.c:28:15: warning: unused variable 'k' [-Wunused-variable]
   28 |     int i, j, k, r;
      |               ^
Lib/CAT_Math.c: At top level:
Lib/CAT_Math.c:387:12: warning: 'compare_doubles' defined but not used [-Wunused-function]
  387 | static int compare_doubles(const void *a, const void *b)
      |            ^~~~~~~~~~~~~~~
Lib/CAT_Math.c: In function 'convert_input_type':
Lib/CAT_Math.c:221:19: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  221 |         buffer[i] = tmp;
      |         ~~~~~~~~~~^~~~~
Lib/CAT_Math.c:180:12: note: 'tmp' was declared here
  180 |     double tmp;
      |            ^~~
Lib/CAT_Math.c: In function 'convert_input_type_float':
Lib/CAT_Math.c:280:19: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  280 |         buffer[i] = tmp;
      |         ~~~~~~~~~~^~~~~
Lib/CAT_Math.c:239:11: note: 'tmp' was declared here
  239 |     float tmp;
      |           ^~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfInfo.lo Lib/CAT_SurfInfo.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfInfo.c -o Lib/CAT_SurfInfo.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Warp.lo Lib/CAT_Warp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Warp.c -o Lib/CAT_Warp.o
Lib/CAT_Warp.c: In function 'apply_uv_warp':
Lib/CAT_Warp.c:132:15: warning: unused variable 'ind' [-Wunused-variable]
  132 |     int i, p, ind;
      |               ^~~
Lib/CAT_Warp.c:130:18: warning: unused variable 'indy' [-Wunused-variable]
  130 |     double indx, indy;
      |                  ^~~~
Lib/CAT_Warp.c:130:12: warning: unused variable 'indx' [-Wunused-variable]
  130 |     double indx, indy;
      |            ^~~~
Lib/CAT_Warp.c:127:19: warning: unused variable 'unit_point' [-Wunused-variable]
  127 |     Point centre, unit_point, *new_points, trans_point;
      |                   ^~~~~~~~~~
Lib/CAT_Warp.c:127:11: warning: unused variable 'centre' [-Wunused-variable]
  127 |     Point centre, unit_point, *new_points, trans_point;
      |           ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Surf.lo Lib/CAT_Surf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Surf.c -o Lib/CAT_Surf.o
Lib/CAT_Surf.c: In function 'get_surface_ratio':
Lib/CAT_Surf.c:114:10: warning: unused variable 'str' [-Wunused-variable]
  114 |     char str[512];
      |          ^~~
Lib/CAT_Surf.c: In function 'get_area_of_points_normalized_to_sphere':
Lib/CAT_Surf.c:221:12: warning: variable 'sphere_area' set but not used [-Wunused-but-set-variable=]
  221 |     double sphere_area, native_area, *area_values_resampled, *areas_sphere, area_sum = 0.0;
      |            ^~~~~~~~~~~
Lib/CAT_Surf.c: In function 'compute_point_distance_mean':
Lib/CAT_Surf.c:579:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  579 |     int i, poly;
      |            ^~~~
Lib/CAT_Surf.c: In function 'compute_point_hausdorff':
Lib/CAT_Surf.c:664:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  664 |     int i, poly;
      |            ^~~~
Lib/CAT_Surf.c: In function 'compute_point_distance':
Lib/CAT_Surf.c:728:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  728 |     int i, poly;
      |            ^~~~
Lib/CAT_Surf.c: In function 'areal_smoothing':
Lib/CAT_Surf.c:858:13: warning: unused variable 'area_values' [-Wunused-variable]
  858 |     double *area_values;
      |             ^~~~~~~~~~~
Lib/CAT_Surf.c: In function 'inflate_surface_and_smooth_fingers':
Lib/CAT_Surf.c:1102:9: warning: variable 'numDistortionAboveThresh' set but not used [-Wunused-but-set-variable=]
 1102 |     int numDistortionAboveThresh;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Surf.c: In function 'check_polygons_shape_integrity':
Lib/CAT_Surf.c:1486:19: warning: unused variable 'n_bad_points' [-Wunused-variable]
 1486 |     int n_errors, n_bad_points;
      |                   ^~~~~~~~~~~~
Lib/CAT_Surf.c:1486:9: warning: unused variable 'n_errors' [-Wunused-variable]
 1486 |     int n_errors, n_bad_points;
      |         ^~~~~~~~
Lib/CAT_Surf.c: In function 'central_to_pial':
Lib/CAT_Surf.c:1617:21: warning: unused variable 'val' [-Wunused-variable]
 1617 |     double x, y, z, val, length;
      |                     ^~~
Lib/CAT_Surf.c:1617:18: warning: unused variable 'z' [-Wunused-variable]
 1617 |     double x, y, z, val, length;
      |                  ^
Lib/CAT_Surf.c:1617:15: warning: unused variable 'y' [-Wunused-variable]
 1617 |     double x, y, z, val, length;
      |               ^
Lib/CAT_Surf.c:1617:12: warning: unused variable 'x' [-Wunused-variable]
 1617 |     double x, y, z, val, length;
      |            ^
Lib/CAT_Surf.c:1616:24: warning: unused variable 'dims' [-Wunused-variable]
 1616 |     int i, p, n_steps, dims[3];
      |                        ^~~~
Lib/CAT_Surf.c: In function 'get_distance_mesh_correction':
Lib/CAT_Surf.c:1744:12: warning: unused variable 'input' [-Wunused-variable]
 1744 |     float *input;
      |            ^~~~~
Lib/CAT_Surf.c: In function 'correct_mesh_folding':
Lib/CAT_Surf.c:1795:12: warning: unused variable 'distance' [-Wunused-variable]
 1795 |     double distance, eps = 1e-6, fwhm = 2.0;
      |            ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Curvature.lo Lib/CAT_Curvature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Curvature.c -o Lib/CAT_Curvature.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Curvature.c: In function 'get_polygon_vertex_curvatures_cg':
Lib/CAT_Curvature.c:296:21: warning: unused variable 'progress' [-Wunused-variable]
  296 |     progress_struct progress;
      |                     ^~~~~~~~
Lib/CAT_Curvature.c: In function 'compute_sulcus_depth':
Lib/CAT_Curvature.c:461:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  461 |     int i, poly;
      |            ^~~~
Lib/CAT_Curvature.c: In function 'compute_convexity':
Lib/CAT_Curvature.c:635:45: warning: unused variable 'nc' [-Wunused-variable]
  635 |     double nx, ny, nz, x, y, z, sx, sy, sz, nc;
      |                                             ^~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Map.lo Lib/CAT_Map.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Map.c -o Lib/CAT_Map.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Smooth.lo Lib/CAT_Smooth.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Smooth.c -o Lib/CAT_Smooth.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Smooth.c: In function 'heatkernel_blur_points':
Lib/CAT_Smooth.c:128:15: warning: unused variable 'n_pts' [-Wunused-variable]
  128 |     int i, c, n_pts, neigh;
      |               ^~~~~
Lib/CAT_Smooth.c: In function 'smooth_heatkernel':
Lib/CAT_Smooth.c:211:13: warning: unused variable 'values_present' [-Wunused-variable]
  211 |     BOOLEAN values_present;
      |             ^~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfaceIO.lo Lib/CAT_SurfaceIO.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfaceIO.c -o Lib/CAT_SurfaceIO.o
Lib/CAT_SurfaceIO.c: In function 'freadInt':
Lib/CAT_SurfaceIO.c:246:9: warning: variable 'count' set but not used [-Wunused-but-set-variable=]
  246 |     int count;
      |         ^~~~~
Lib/CAT_SurfaceIO.c: In function 'freadFloat':
Lib/CAT_SurfaceIO.c:258:9: warning: variable 'count' set but not used [-Wunused-but-set-variable=]
  258 |     int count;
      |         ^~~~~
Lib/CAT_SurfaceIO.c: In function 'input_gifti':
Lib/CAT_SurfaceIO.c:1446:11: warning: unused variable 'point' [-Wunused-variable]
 1446 |     Point point;
      |           ^~~~~
Lib/CAT_SurfaceIO.c: In function 'input_gifti_curv':
Lib/CAT_SurfaceIO.c:1778:19: warning: unused variable 'numDA' [-Wunused-variable]
 1778 |     int k, valid, numDA;
      |                   ^~~~~
Lib/CAT_SurfaceIO.c: In function 'output_freesurfer':
Lib/CAT_SurfaceIO.c:1881:19: warning: unused variable 'buffer' [-Wunused-variable]
 1881 |     unsigned char buffer;
      |                   ^~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_freesurfer_curv':
Lib/CAT_SurfaceIO.c:2033:19: warning: variable 'fnum' set but not used [-Wunused-but-set-variable=]
 2033 |     int i, magic, fnum, vals_per_vertex;
      |                   ^~~~
Lib/CAT_SurfaceIO.c: In function 'input_txt_values':
Lib/CAT_SurfaceIO.c:2400:12: warning: unused variable 'status' [-Wunused-variable]
 2400 |     Status status;
      |            ^~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_values_any_format':
Lib/CAT_SurfaceIO.c:2429:11: warning: unused variable 'fp' [-Wunused-variable]
 2429 |     FILE *fp;
      |           ^~
Lib/CAT_SurfaceIO.c: In function 'read_annotation_table':
Lib/CAT_SurfaceIO.c:2638:18: warning: variable 'structure' set but not used [-Wunused-but-set-variable=]
 2638 |     int version, structure;
      |                  ^~~~~~~~~
Lib/CAT_SurfaceIO.c:2637:35: warning: variable 'tag' set but not used [-Wunused-but-set-variable=]
 2637 |     int i, flag, label, len, vno, tag, *array;
      |                                   ^~~
Lib/CAT_SurfaceIO.c:2637:12: warning: variable 'flag' set but not used [-Wunused-but-set-variable=]
 2637 |     int i, flag, label, len, vno, tag, *array;
      |            ^~~~
Lib/CAT_SurfaceIO.c:2636:30: warning: unused variable 'struct_names' [-Wunused-variable]
 2636 |     char annot_name[1000], **struct_names;
      |                              ^~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'write_annotation_table':
Lib/CAT_SurfaceIO.c:2737:18: warning: unused variable 'structure' [-Wunused-variable]
 2737 |     int version, structure;
      |                  ^~~~~~~~~
Lib/CAT_SurfaceIO.c:2737:9: warning: unused variable 'version' [-Wunused-variable]
 2737 |     int version, structure;
      |         ^~~~~~~
Lib/CAT_SurfaceIO.c:2736:35: warning: unused variable 'tag' [-Wunused-variable]
 2736 |     int i, flag, label, len, vno, tag;
      |                                   ^~~
Lib/CAT_SurfaceIO.c:2736:30: warning: unused variable 'vno' [-Wunused-variable]
 2736 |     int i, flag, label, len, vno, tag;
      |                              ^~~
Lib/CAT_SurfaceIO.c:2736:18: warning: unused variable 'label' [-Wunused-variable]
 2736 |     int i, flag, label, len, vno, tag;
      |                  ^~~~~
Lib/CAT_SurfaceIO.c:2736:12: warning: unused variable 'flag' [-Wunused-variable]
 2736 |     int i, flag, label, len, vno, tag;
      |            ^~~~
Lib/CAT_SurfaceIO.c:2735:12: warning: unused variable 'struct_names' [-Wunused-variable]
 2735 |     char **struct_names;
      |            ^~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_oogl':
Lib/CAT_SurfaceIO.c:630:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  630 |     fscanf(fp, "%s", line);
      |     ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:634:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  634 |         fscanf(fp, "%d %d %d", &polygons->n_points,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  635 |                &polygons->n_items, &dummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:644:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  644 |             fscanf(fp, "%f %f %f\n", &Point_x(point),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  645 |                    &Point_y(point), &Point_z(point));
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:656:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  656 |             fscanf(fp, "%d %d %d %d\n", &n_edges,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  657 |                    &polygons->indices[POINT_INDEX(
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  658 |                        polygons->end_indices, f, 0)],
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  659 |                    &polygons->indices[POINT_INDEX(
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  660 |                        polygons->end_indices, f, 1)],
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  661 |                    &polygons->indices[POINT_INDEX(
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  662 |                        polygons->end_indices, f, 2)]);
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'read_gifti_image_in_dir':
Lib/CAT_SurfaceIO.c:1418:15: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result]
 1418 |         (void)chdir(saved_cwd);
      |               ^~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_freesurfer':
Lib/CAT_SurfaceIO.c:1982:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 1982 |         fgets(line, 1024, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:1983:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
 1983 |         fscanf(fp, "\n");
      |         ^~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_dx':
Lib/CAT_SurfaceIO.c:2106:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2106 |     fgets(line, 54, fp);
      |     ^~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2120:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2120 |         fgets(line, pos, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2128:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2128 |             fgets(line, 1000, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2133:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2133 |         fgets(line, 1000, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2134:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2134 |         fgets(line, 1000, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2135:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2135 |         fgets(line, 52, fp);
      |         ^~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2150:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2150 |             fgets(line, pos, fp);
      |             ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2168:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2168 |             fgets(line, 1000, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_dfs':
Lib/CAT_SurfaceIO.c:2222:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2222 |     fread(&dummy, sizeof(char)make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
, 12, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2223:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2223 |     fread(&hdr_size, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2224:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2224 |     fread(&mdoffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2225:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2225 |     fread(&pdoffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2226:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2226 |     fread(&polygons->n_points, 4, 1, fp); /* Number of triangles */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2227:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2227 |     fread(&polygons->n_items, 4, 1, fp);  /* Number of vertices */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2230:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2230 |     fread(&nStrips, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2231:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2231 |     fread(&stripSize, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2232:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2232 |     fread(&normals, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2233:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2233 |     fread(&uvStart, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2234:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2234 |     fread(&vcoffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2235:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2235 |     fread(&labelOffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2236:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2236 |     fread(&vertexAttributes, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2238:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2238 |     fread(&pad2, sizeof(char), 124, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2255:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2255 |         fread(&tmp, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2261:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2261 |         fread(&tmp2, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2263:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2263 |         fread(&tmp2, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2265:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2265 |         fread(&tmp2, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'read_pgm':
Lib/CAT_SurfaceIO.c:2298:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2298 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2306:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2306 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2308:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2308 |         fgets(line, 256, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2310:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2310 |         fgets(line, 256, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2312:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2312 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'output_values_any_format':
Lib/CAT_SurfaceIO.c:2484:17: warning: 'd' may be used uninitialized [-Wmaybe-uninitialized]
 2484 |                 fprintf(fp, "%f\n", d[i]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2459:13: note: 'd' was declared here
 2459 |     double *d;
      |             ^
Lib/CAT_SurfaceIO.c:2486:17: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized]
 2486 |                 fprintf(fp, "%d\n", r[i]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2460:13: note: 'r' was declared here
 2460 |     int i, *r;
      |             ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Octree.lo Lib/CAT_Octree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Octree.c -o Lib/CAT_Octree.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Octree.c: In function 'insert_triangle':
Lib/CAT_Octree.c:162:28: warning: unused variable 'cur' [-Wunused-variable]
  162 |     struct polynode *tmp, *cur;
      |                            ^~~
Lib/CAT_Octree.c: In function 'build_octree':
Lib/CAT_Octree.c:212:21: warning: unused variable 'nnodes' [-Wunused-variable]
  212 |     int t, i, size, nnodes;
      |                     ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Intersect.lo Lib/CAT_Intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Intersect.c -o Lib/CAT_Intersect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Intersect.c: In function 'find_near_intersections':
Lib/CAT_Intersect.c:195:13: warning: variable 'closest_index' set but not used [-Wunused-but-set-variable=]
  195 |         int closest_index = -1;
      |             ^~~~~~~~~~~~~
Lib/CAT_Intersect.c: In function 'smooth_selfintersections':
Lib/CAT_Intersect.c:863:11: warning: unused variable 'fp' [-Wunused-variable]
  863 |     FILE *fp;
      |           ^~
Lib/CAT_Intersect.c: In function 'remove_near_intersections':
Lib/CAT_Intersect.c:1266:12: warning: unused variable 'new_pts' [-Wunused-variable]
 1266 |     Point *new_pts;
      |            ^~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Topology.lo Lib/CAT_Topology.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Topology.c -o Lib/CAT_Topology.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Topology.c: In function 'sph_postcorrect':
Lib/CAT_Topology.c:144:20: warning: unused variable 'poly' [-Wunused-variable]
  144 |     int p, d, val, poly, *flag, smooth_iters;
      |                    ^~~~
Lib/CAT_Topology.c:141:20: warning: unused variable 'surface_object' [-Wunused-variable]
  141 |     object_struct *surface_object;
      |                    ^~~~~~~~~~~~~~
Lib/CAT_Topology.c: In function 'fix_topology_sph':
Lib/CAT_Topology.c:291:27: warning: unused variable 'sum_HD_hole' [-Wunused-variable]
  291 |     double sum_HD_handle, sum_HD_hole;
      |                           ^~~~~~~~~~~
Lib/CAT_Topology.c:291:12: warning: unused variable 'sum_HD_handle' [-Wunused-variable]
  291 |     double sum_HD_handle, sum_HD_hole;
      |            ^~~~~~~~~~~~~
Lib/CAT_Topology.c:287:20: warning: unused variable 'd' [-Wunused-variable]
  287 |     int bw2, i, p, d, n_done;
      |                    ^
Lib/CAT_Topology.c:281:69: warning: unused variable 'surface_object' [-Wunused-variable]
  281 |     object_struct **hbw_objects, **lbw_objects, **reparam_objects, *surface_object;
      |                                                                     ^~~~~~~~~~~~~~
In function 'sph_postcorrect',
    inlined from 'fix_topology_sph' at Lib/CAT_Topology.c:486:5:
Lib/CAT_Topology.c:181:30: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
  181 |                 hbw_holes[p] = val;
      |                 ~~~~~~~~~~~~~^~~~~
Lib/CAT_Topology.c: In function 'fix_topology_sph':
Lib/CAT_Topology.c:144:15: note: 'val' was declared here
  144 |     int p, d, val, poly, *flag, smooth_iters;
      |               ^~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Resample.lo Lib/CAT_Resample.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Resample.c -o Lib/CAT_Resample.o
Lib/CAT_Resample.c: In function 'resample_values_sphere':
Lib/CAT_Resample.c:510:9: warning: unused variable 'i' [-Wunused-variable]
  510 |     int i;
      |         ^
Lib/CAT_Resample.c: In function 'resample_surface_to_target_sphere':
Lib/CAT_Resample.c:555:26: warning: unused variable 'neighbours' [-Wunused-variable]
  555 |     int *n_neighbours, **neighbours;
      |                          ^~~~~~~~~~
Lib/CAT_Resample.c:555:10: warning: unused variable 'n_neighbours' [-Wunused-variable]
  555 |     int *n_neighbours, **neighbours;
      |          ^~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Patch.lo Lib/CAT_Patch.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Patch.c -o Lib/CAT_Patch.o
Lib/CAT_Patch.c: In function 'extract_patch_around_polygon':
Lib/CAT_Patch.c:279:22: warning: unused variable 'patch' [-Wunused-variable]
  279 |     polygons_struct *patch;
      |                      ^~~~~
Lib/CAT_Patch.c: In function 'extract_patch_around_point':
Lib/CAT_Patch.c:322:22: warning: unused variable 'patch' [-Wunused-variable]
  322 |     polygons_struct *patch;
      |                      ^~~~~
Lib/CAT_Patch.c:320:21: warning: unused variable 'ptmap' [-Wunused-variable]
  320 |     int *polyflag, *ptmap;
      |                     ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Defect.lo Lib/CAT_Defect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Defect.c -o Lib/CAT_Defect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Defect.c: In function 'defect_euler':
Lib/CAT_Defect.c:72:34: warning: variable 'n_dup_e' set but not used [-Wunused-but-set-variable=]
   72 |     int p, n, nn, n_v, n_e, n_f, n_dup_e;
      |                                  ^~~~~~~
Lib/CAT_Defect.c: In function 'find_topological_defects':
Lib/CAT_Defect.c:178:22: warning: unused variable 'ltree' [-Wunused-variable]
  178 |     struct looptree *ltree;
      |                      ^~~~~
Lib/CAT_Defect.c:176:18: warning: unused variable 'n' [-Wunused-variable]
  176 |     int size, i, n, p;
      |                  ^
Lib/CAT_Defect.c:176:15: warning: unused variable 'i' [-Wunused-variable]
  176 |     int size, i, n, p;
      |               ^
Lib/CAT_Defect.c:176:9: warning: unused variable 'size' [-Wunused-variable]
  176 |     int size, i, n, p;
      |         ^~~~
Lib/CAT_Defect.c:175:31: warning: unused variable 'n_euler' [-Wunused-variable]
  175 |     int d, pts[3], n_defects, n_euler, n_intersects;
      |                               ^~~~~~~
Lib/CAT_Defect.c:175:20: warning: unused variable 'n_defects' [-Wunused-variable]
  175 |     int d, pts[3], n_defects, n_euler, n_intersects;
      |                    ^~~~~~~~~
Lib/CAT_Defect.c:175:12: warning: unused variable 'pts' [-Wunused-variable]
  175 |     int d, pts[3], n_defects, n_euler, n_intersects;
      |            ^~~
Lib/CAT_Defect.c: In function 'update_polydefects':
Lib/CAT_Defect.c:315:12: warning: unused variable 'd' [-Wunused-variable]
  315 |     int p, d;
      |            ^
Lib/CAT_Defect.c: In function 'get_defect_size':
Lib/CAT_Defect.c:377:9: warning: unused variable 'i' [-Wunused-variable]
  377 |     int i, p, d;
      |         ^
Lib/CAT_Defect.c: In function 'bisect_defects':
Lib/CAT_Defect.c:425:12: warning: unused variable 'dir' [-Wunused-variable]
  425 |     Vector dir;
      |            ^~~
Lib/CAT_Defect.c:423:15: warning: unused variable 'maxpts' [-Wunused-variable]
  423 |     int npts, maxpts, *pts, *polydefects;
      |               ^~~~~~
Lib/CAT_Defect.c:422:15: warning: unused variable 'i' [-Wunused-variable]
  422 |     int p, d, i, fillflag, euler;
      |               ^
Lib/CAT_Defect.c: In function 'find_artifacts':
Lib/CAT_Defect.c:670:24: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  670 |     int size, i, n, p, poly, done;
      |                        ^~~~
Lib/CAT_Defect.c:669:9: warning: unused variable 'd' [-Wunused-variable]
  669 |     int d, euler, aval, aval2;
      |         ^
Lib/CAT_Defect.c: In function 'bisect_defects':
Lib/CAT_Defect.c:499:21: warning: 'polydefects' may be used uninitialized [-Wmaybe-uninitialized]
  499 |             euler = defect_euler(surface, defects, polydefects, d,
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  500 |                                  n_neighbours, neighbours);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Defect.c:423:30: note: 'polydefects' was declared here
  423 |     int npts, maxpts, *pts, *polydefects;
      |                              ^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Complexity.lo Lib/CAT_Complexity.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Complexity.c -o Lib/CAT_Complexity.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Complexity.c: In function 'get_localfd':
Lib/CAT_Complexity.c:106:22: warning: unused variable 'vertidx' [-Wunused-variable]
  106 |     int ptidx, poly, vertidx, size;
      |                      ^~~~~~~
Lib/CAT_Complexity.c:105:11: warning: unused variable 'points' [-Wunused-variable]
  105 |     Point points[MAX_POINTS_PER_POLYGON];
      |           ^~~~~~
Lib/CAT_Complexity.c:104:32: warning: unused variable 'area' [-Wunused-variable]
  104 |     double *polyfd, poly_size, area;
      |                                ^~~~
Lib/CAT_Complexity.c:104:21: warning: unused variable 'poly_size' [-Wunused-variable]
  104 |     double *polyfd, poly_size, area;
      |                     ^~~~~~~~~
Lib/CAT_Complexity.c: In function 'fractal_dimension':
Lib/CAT_Complexity.c:230:11: warning: unused variable 'centre' [-Wunused-variable]
  230 |     Point centre;
      |           ^~~~~~
Lib/CAT_Complexity.c:228:18: warning: unused variable 'n' [-Wunused-variable]
  228 |     int i, iter, n, n_triangles;
      |                  ^
Lib/CAT_Complexity.c: In function 'get_smoothed_values':
Lib/CAT_Complexity.c:346:11: warning: unused variable 'point' [-Wunused-variable]
  346 |     Point point;
      |           ^~~~~
Lib/CAT_Complexity.c:344:13: warning: unused variable 'sm_values' [-Wunused-variable]
  344 |     double *sm_values;
      |             ^~~~~~~~~
Lib/CAT_Complexity.c:343:15: warning: unused variable 'n_iter' [-Wunused-variable]
  343 |     int i, j, n_iter;
      |               ^~~~~~
Lib/CAT_Complexity.c:343:12: warning: unused variable 'j' [-Wunused-variable]
  343 |     int i, j, n_iter;
      |            ^
Lib/CAT_Complexity.c:343:9: warning: unused variable 'i' [-Wunused-variable]
  343 |     int i, j, n_iter;
      |         ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Refine.lo Lib/CAT_Refine.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Refine.c -o Lib/CAT_Refine.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Interpolate.lo Lib/CAT_Interpolate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Interpolate.c -o Lib/CAT_Interpolate.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Separate.lo Lib/CAT_Separate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Separate.c -o Lib/CAT_Separate.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Isometrics.lo Lib/CAT_Isometrics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Isometrics.c -o Lib/CAT_Isometrics.o
Lib/CAT_Isometrics.c: In function 'smooth':
Lib/CAT_Isometrics.c:150:9: warning: unused variable 'n1' [-Wunused-variable]
  150 |     int n1, n2, count, stepsize;
      |         ^~
Lib/CAT_Isometrics.c: In function 'distortcorrect':
Lib/CAT_Isometrics.c:351:21: warning: unused variable 'progress' [-Wunused-variable]
  351 |     progress_struct progress;
      |                     ^~~~~~~~
Lib/CAT_Isometrics.c:350:9: warning: unused variable 'n1' [-Wunused-variable]
  350 |     int n1, n2, count, stepsize;
      |         ^~
Lib/CAT_Isometrics.c: In function 'stretch':
Lib/CAT_Isometrics.c:536:9: warning: unused variable 'i' [-Wunused-variable]
  536 |     int i, n, it, p;
      |         ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Gyrification.lo Lib/CAT_Gyrification.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Gyrification.c -o Lib/CAT_Gyrification.o
Lib/CAT_Gyrification.c: In function 'gyrification_index_sph':
Lib/CAT_Gyrification.c:46:55: warning: unused variable 'local_gi' [-Wunused-variable]
   46 |     double *convex_areas, *areas, convex_area, area, *local_gi;
      |                                                       ^~~~~~~~
Lib/CAT_Gyrification.c:45:40: warning: unused variable 'spectral_power' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |                                        ^~~~~~~~~~~~~~
Lib/CAT_Gyrification.c:45:31: warning: unused variable 'rdataz' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |                               ^~~~~~
Lib/CAT_Gyrification.c:45:22: warning: unused variable 'rdatay' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |                      ^~~~~~
Lib/CAT_Gyrification.c:45:13: warning: unused variable 'rdatax' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |             ^~~~~~
Lib/CAT_Gyrification.c:44:48: warning: unused variable 'licz' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                                                ^~~~
Lib/CAT_Gyrification.c:44:41: warning: unused variable 'lrcz' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                                         ^~~~
Lib/CAT_Gyrification.c:44:34: warning: unused variable 'licy' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                                  ^~~~
Lib/CAT_Gyrification.c:44:27: warning: unused variable 'lrcy' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                           ^~~~
Lib/CAT_Gyrification.c:44:20: warning: unused variable 'licx' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                    ^~~~
Lib/CAT_Gyrification.c:44:13: warning: unused variable 'lrcx' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |             ^~~~
Lib/CAT_Gyrification.c:43:43: warning: unused variable 'icz' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                                           ^~~
Lib/CAT_Gyrification.c:43:37: warning: unused variable 'rcz' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                                     ^~~
Lib/CAT_Gyrification.c:43:31: warning: unused variable 'icy' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                               ^~~
Lib/CAT_Gyrification.c:43:25: warning: unused variable 'rcy' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                         ^~~
Lib/CAT_Gyrification.c:43:19: warning: unused variable 'icx' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                   ^~~
Lib/CAT_Gyrification.c:43:13: warning: unused variable 'rcx' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |             ^~~
Lib/CAT_Gyrification.c:42:12: warning: variable 'n_points' set but not used [-Wunused-but-set-variable=]
   42 |     int i, n_points;
      |            ^~~~~~~~
Lib/CAT_Gyrification.c:40:77: warning: unused variable 'surface_resampled' [-Wunused-variable]
   40 |     polygons_struct *polygons, *convex, *convex_sphere, *convex_resampled, *surface_resampled;
      |                                                                             ^~~~~~~~~~~~~~~~~
Lib/CAT_Gyrification.c:40:58: warning: unused variable 'convex_resampled' [-Wunused-variable]
   40 |     polygons_struct *polygons, *convex, *convex_sphere, *convex_resampled, *surface_resampled;
      |                                                          ^~~~~~~~~~~~~~~~
Lib/CAT_Gyrification.c:40:22: warning: unused variable 'polygons' [-Wunused-variable]
   40 |     polygons_struct *polygons, *convex, *convex_sphere, *convex_resampled, *surface_resampled;
      |                      ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_DepthPotential.lo Lib/CAT_DepthPotential.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_DepthPotential.c -o Lib/CAT_DepthPotential.o
Lib/CAT_DepthPotential.c: In function 'compute_depth_potential':
Lib/CAT_DepthPotential.c:83:21: warning: unused variable 'i' [-Wunused-variable]
   83 |     int lambda = 2, i;
      |                     ^
Lib/CAT_DepthPotential.c:75:12: warning: unused variable 'coords' [-Wunused-variable]
   75 |     Point *coords = NULL;     // coordinates
      |            ^~~~~~
Lib/CAT_DepthPotential.c: In function 'stable_normals':
Lib/CAT_DepthPotential.c:659:24: warning: unused variable 'mag3' [-Wunused-variable]
  659 |     double mag1, mag2, mag3, mag3x1, mag1x2, mag2x3, w1, w2, w3;
      |                        ^~~~
Lib/CAT_DepthPotential.c:659:18: warning: unused variable 'mag2' [-Wunused-variable]
  659 |     double mag1, mag2, mag3, mag3x1, mag1x2, mag2x3, w1, w2, w3;
      |                  ^~~~
Lib/CAT_DepthPotential.c:659:12: warning: unused variable 'mag1' [-Wunused-variable]
  659 |     double mag1, mag2, mag3, mag3x1, mag1x2, mag2x3, w1, w2, w3;
      |            ^~~~
In function 'gauss_seidel',
    inlined from 'local_depth_potential' at Lib/CAT_DepthPotential.c:446:5:
Lib/CAT_DepthPotential.c:509:17: warning: 'diag' may be used uninitialized [-Wmaybe-uninitialized]
  509 |             val /= diag;
      |             ~~~~^~~~~~~
Lib/CAT_DepthPotential.c: In function 'local_depth_potential':
Lib/CAT_DepthPotential.c:485:28: note: 'diag' was declared here
  485 |     double res, res0, val, diag;
      |                            ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_ConvexHull.lo Lib/CAT_ConvexHull.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_ConvexHull.c -o Lib/CAT_ConvexHull.o
Lib/CAT_ConvexHull.c: In function 'get_surface_neighbours':
Lib/CAT_ConvexHull.c:1074:5: warning: multi-line comment [-Wcomment]
 1074 |     //      /\   /\
      |     ^
In file included from ./3rdparty/volume_io/Include/volume_io.h:46,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from Lib/CAT_ConvexHull.c:12:
Lib/CAT_ConvexHull.c: In function 'get_plane_polygon_vertices':
./3rdparty/volume_io/Include/volume_io/geom_structs.h:70:53: warning: 'horizontal' may be used uninitialized [-Wmaybe-uninitialized]
   70 | #define  Point_coord( point, coord ) ((point).coords[coord])
Lib/CAT_ConvexHull.c:491:38: note: 'horizontal' declared here
  491 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                      ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'horizontal' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
Lib/CAT_ConvexHull.c:491:38: note: 'horizontal' declared here
  491 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                      ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'horizontal' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
Lib/CAT_ConvexHull.c:491:38: note: 'horizontal' declared here
  491 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                      ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'vertical.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:491:50: note: 'vertical.coords[0]' was declared here
  491 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                                  ^~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'vertical.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:491:50: note: 'vertical.coords[1]' was declared here
  491 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                                  ^~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'vertical.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:491:50: note: 'vertical.coords[2]' was declared here
  491 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                                  ^~~~~~~~
Lib/CAT_ConvexHull.c: In function 'find_limit_plane.isra.0':
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'horizontal.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:228:12: note: 'horizontal.coords[0]' was declared here
  228 |     Vector horizontal, vertical, offset;
      |            ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'horizontal.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:228:12: note: 'horizontal.coords[1]' was declared here
  228 |     Vector horizontal, vertical, offset;
      |            ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'horizontal.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:228:12: note: 'horizontal.coords[2]' was declared here
  228 |     Vector horizontal, vertical, offset;
      |            ^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_LayerSmooth.lo Lib/CAT_LayerSmooth.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_LayerSmooth.c -o Lib/CAT_LayerSmooth.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Kmeans.lo Lib/CAT_Kmeans.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Kmeans.c -o Lib/CAT_Kmeans.o
Lib/CAT_Kmeans.c: In function 'Kmeans':
Lib/CAT_Kmeans.c:217:31: warning: unused variable 'sum' [-Wunused-variable]
  217 |     double e, emin, eps, val, sum;
      |                               ^~~
Lib/CAT_Kmeans.c:216:12: warning: unused variable 'j' [-Wunused-variable]
  216 |     int i, j, k;
      |            ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Amap.lo Lib/CAT_Amap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Amap.c -o Lib/CAT_Amap.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Amap.c: In function 'Pve5':
Lib/CAT_Amap.c:362:15: warning: unused variable 'mx' [-Wunused-variable]
  362 |     double w, mx;
      |               ^~
Lib/CAT_Amap.c:361:12: warning: unused variable 'mxi' [-Wunused-variable]
  361 |     int i, mxi;
      |            ^~~
Lib/CAT_Amap.c: In function 'MrfPrior':
Lib/CAT_Amap.c:461:15: warning: unused variable 'k' [-Wunused-variable]
  461 |     int i, j, k, x, y, z;
      |               ^
Lib/CAT_Amap.c: In function 'EstimateSegmentation':
Lib/CAT_Amap.c:985:69: warning: unused variable 'replace' [-Wunused-variable]
  985 |     int ix, iy, iz, ix_large, iy_large, iz_large, ind2, ind2_large, replace = 1;
      |                                                                     ^~~~~~~
Lib/CAT_Amap.c:982:53: warning: variable 'voxelsize_squared' set but not used [-Wunused-but-set-variable=]
  982 |     double pvalue[MAX_NC], mrf_probability[MAX_NC], voxelsize_squared[3], psum;
      |                                                     ^~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:982:28: warning: unused variable 'mrf_probability' [-Wunused-variable]
  982 |     double pvalue[MAX_NC], mrf_probability[MAX_NC], voxelsize_squared[3], psum;
      |                            ^~~~~~~~~~~~~~~
Lib/CAT_Amap.c:981:74: warning: unused variable 'exponent' [-Wunused-variable]
  981 |     double d[MAX_NC], alpha[MAX_NC], log_alpha[MAX_NC], log_var[MAX_NC], exponent[MAX_NC];
      |                                                                          ^~~~~~~~
Lib/CAT_Amap.c: In function 'Pve5':
Lib/CAT_Amap.c:419:17: warning: 'new_val[0]' may be used uninitialized [-Wmaybe-uninitialized]
  419 |         prob[i] = new_val[CSFLABEL - 1];
      |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:363:19: note: 'new_val[0]' was declared here
  363 |     unsigned char new_val[MAX_NC];
      |                   ^~~~~~~
Lib/CAT_Amap.c:420:23: warning: 'new_val[2]' may be used uninitialized [-Wmaybe-uninitialized]
  420 |         prob[vol + i] = new_val[GMLABEL - 1];
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:363:19: note: 'new_val[2]' was declared here
  363 |     unsigned char new_val[MAX_NC];
      |                   ^~~~~~~
Lib/CAT_Amap.c:421:29: warning: 'new_val[4]' may be used uninitialized [-Wmaybe-uninitialized]
  421 |         prob[(2 * vol) + i] = new_val[WMLABEL - 1];
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:363:19: note: 'new_val[4]' was declared here
  363 |     unsigned char new_val[MAX_NC];
      |                   ^~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Bmap.lo Lib/CAT_Bmap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Bmap.c -o Lib/CAT_Bmap.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Bmap.c: In function 'ComputeInitialPveLabel':
Lib/CAT_Bmap.c:118:29: warning: unused variable 'ind2' [-Wunused-variable]
  118 |     int i, ix, iy, iz, ind, ind2;
      |                             ^~~~
Lib/CAT_Bmap.c:118:24: warning: unused variable 'ind' [-Wunused-variable]
  118 |     int i, ix, iy, iz, ind, ind2;
      |                        ^~~
Lib/CAT_Bmap.c:118:20: warning: unused variable 'iz' [-Wunused-variable]
  118 |     int i, ix, iy, iz, ind, ind2;
      |                    ^~
Lib/CAT_Bmap.c:118:16: warning: unused variable 'iy' [-Wunused-variable]
  118 |     int i, ix, iy, iz, ind, ind2;
      |                ^~
Lib/CAT_Bmap.c:118:12: warning: unused variable 'ix' [-Wunused-variable]
  118 |     int i, ix, iy, iz, ind, ind2;
      |            ^~
Lib/CAT_Bmap.c: In function 'movingAverage':
Lib/CAT_Bmap.c:368:12: warning: unused variable 'fwhm' [-Wunused-variable]
  368 |     double fwhm[3] = {50.0, 50.0, 50.0};
      |            ^~~~
Lib/CAT_Bmap.c:367:12: warning: unused variable 'voxel_size' [-Wunused-variable]
  367 |     double voxel_size[3] = {1.0, 1.0, 1.0};
      |            ^~~~~~~~~~
Lib/CAT_Bmap.c:341:30: warning: unused variable 'h' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |                              ^
Lib/CAT_Bmap.c:341:27: warning: unused variable 'l' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |                           ^
Lib/CAT_Bmap.c:341:24: warning: unused variable 'r' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |                        ^
Lib/CAT_Bmap.c:341:21: warning: unused variable 'z' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |                     ^
Lib/CAT_Bmap.c:341:18: warning: unused variable 'y' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |                  ^
Lib/CAT_Bmap.c:341:15: warning: unused variable 'x' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |               ^
Lib/CAT_Bmap.c:341:12: warning: unused variable 'j' [-Wunused-variable]
  341 |     int i, j, x, y, z, r, l, h;
      |            ^
Lib/CAT_Bmap.c: In function 'Bmap':
Lib/CAT_Bmap.c:404:23: warning: unused variable 'val' [-Wunused-variable]
  404 |     double thresh[2], val, d;
      |                       ^~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Vol.lo Lib/CAT_Vol.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Vol.c -o Lib/CAT_Vol.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Vol.c: In function 'dist_close_float':
Lib/CAT_Vol.c:2243:21: warning: unused variable 'j' [-Wunused-variable]
 2243 |     int i, x, y, z, j, band, dims2[3];
      |                     ^
Lib/CAT_Vol.c: In function 'dist_open_float':
Lib/CAT_Vol.c:2359:12: warning: unused variable 'j' [-Wunused-variable]
 2359 |     int i, j;
      |            ^
Lib/CAT_Vol.c: In function 'smooth_subsample_float':
Lib/CAT_Vol.c:3311:23: warning: variable 'nvox' set but not used [-Wunused-but-set-variable=]
 3311 |     int i, nvox_samp, nvox;
      |                       ^~~~
Lib/CAT_Vol.c: In function 'localstat_subsample3':
Lib/CAT_Vol.c:3452:9: warning: unused variable 'i' [-Wunused-variable]
 3452 |     int i, nvox_samp, nvox;
      |         ^
Lib/CAT_Vol.c: In function 'correct_bias_label':
Lib/CAT_Vol.c:3515:12: warning: unused variable 'j' [-Wunused-variable]
 3515 |     int i, j, nvox, nvoxr, n[MAX_NC], n_classes = 0;
      |            ^
Lib/CAT_Vol.c: In function 'correct_bias':
Lib/CAT_Vol.c:3661:42: warning: unused variable 'scl' [-Wunused-variable]
 3661 |     float max_dist = -FLT_MAX, mx_image, scl;
      |                                          ^~~
Lib/CAT_Vol.c:3661:32: warning: unused variable 'mx_image' [-Wunused-variable]
 3661 |     float max_dist = -FLT_MAX, mx_image, scl;
      |                                ^~~~~~~~
Lib/CAT_Vol.c:3659:20: warning: unused variable 'mask' [-Wunused-variable]
 3659 |     unsigned char *mask;
      |                    ^~~~
Lib/CAT_Vol.c: In function 'keep_largest_cluster_float':
Lib/CAT_Vol.c:4016:11: warning: unused variable 'valToAdd' [-Wunused-variable]
 4016 |     float valToAdd;
      |           ^~~~~~~~
Lib/CAT_Vol.c: In function 'fill_holes':
Lib/CAT_Vol.c:4202:12: warning: unused variable 'voxelsize' [-Wunused-variable]
 4202 |     double voxelsize[3] = {1.0, 1.0, 1.0};
      |            ^~~~~~~~~
Lib/CAT_Vol.c: In function 'smooth_float':
Lib/CAT_Vol.c:1240:12: warning: 'sum_mask' may be used uninitialized [-Wmaybe-uninitialized]
 1240 |         if (sum_mask > 0)
      |            ^
Lib/CAT_Vol.c:1155:23: note: 'sum_mask' was declared here
 1155 |     int xyz[3], nvox, sum_mask;
      |                       ^~~~~~~~
Lib/CAT_Vol.c:1242:13: warning: 'mask' may be used uninitialized [-Wmaybe-uninitialized]
 1242 |             convxyz_float(mask, x, y, z, ((2 * xyz[0]) + 1), ((2 * xyz[1]) + 1), ((2 * xyz[2]) + 1), -xyz[0], -xyz[1], -xyz[2], mask, dims);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Vol.c:1156:12: note: 'mask' was declared here
 1156 |     float *mask;
      |            ^~~~
Lib/CAT_Vol.c:1245:31: warning: 'mask2' may be used uninitialized [-Wmaybe-uninitialized]
 1245 |                 vol[i] = mask2[i] > 0 ? vol[i] / mask[i] : 0.0;
      |                          ~~~~~^~~
Lib/CAT_Vol.c:1157:20: note: 'mask2' was declared here
 1157 |     unsigned char *mask2;
      |                    ^~~~~
Lib/CAT_Vol.c: In function 'downcut3':
Lib/CAT_Vol.c:1847:5: warning: 'intensity_f_69' may be used uninitialized [-Wmaybe-uninitialized]
 1847 |     downcut_float(labels_f, intensity_f, dist_f, dims, limit, voxelsize, dd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Vol.c:1585:6: note: by argument 2 of type 'const float *' to 'downcut_float' declared here
 1585 | void downcut_float(float *labels, const float *intensity, float *dist,
      |      ^~~~~~~~~~~~~
Lib/CAT_Vol.c:1847:5: warning: 'intensity_f_69' may be used uninitialized [-Wmaybe-uninitialized]
 1847 |     downcut_float(labels_f, intensity_f, dist_f, dims, limit, voxelsize, dd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Vol.c:1585:6: note: by argument 2 of type 'const float *' to 'downcut_float' declared here
 1585 | void downcut_float(float *labels, const float *intensity, float *dist,
      |      ^~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_NiftiLib.lo Lib/CAT_NiftiLib.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_NiftiLib.c -o Lib/CAT_NiftiLib.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_NiftiLib.c: In function 'write_nifti_double':
Lib/CAT_NiftiLib.c:288:45: warning: 'img_range[1]' may be used uninitialized [-Wmaybe-uninitialized]
  288 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) /
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:175:12: note: 'img_range[1]' was declared here
  175 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c:288:45: warning: 'img_range[0]' may be used uninitialized [-Wmaybe-uninitialized]
  288 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) /
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:175:12: note: 'img_range[0]' was declared here
  175 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c:289:44: warning: 'dt_range[1]' may be used uninitialized [-Wmaybe-uninitialized]
  289 |                               (dt_range[1] - dt_range[0]));
      |                               ~~~~~~~~~~~~~^~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:175:26: note: 'dt_range[1]' was declared here
  175 |     double img_range[2], dt_range[2], val;
      |                          ^~~~~~~~
Lib/CAT_NiftiLib.c:289:44: warning: 'dt_range[0]' may be used uninitialized [-Wmaybe-uninitialized]
  289 |                               (dt_range[1] - dt_range[0]));
      |                               ~~~~~~~~~~~~~^~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:175:26: note: 'dt_range[0]' was declared here
  175 |     double img_range[2], dt_range[2], val;
      |                          ^~~~~~~~
Lib/CAT_NiftiLib.c: In function 'write_nifti_float':
Lib/CAT_NiftiLib.c:616:45: warning: 'img_range[1]' may be used uninitialized [-Wmaybe-uninitialized]
  616 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) / (dt_range[1] - dt_range[0]));
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:503:12: note: 'img_range[1]' was declared here
  503 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c:616:45: warning: 'img_range[0]' may be used uninitialized [-Wmaybe-uninitialized]
  616 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) / (dt_range[1] - dt_range[0]));
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:503:12: note: 'img_range[0]' was declared here
  503 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c:616:76: warning: 'dt_range[1]' may be used uninitialized [-Wmaybe-uninitialized]
  616 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) / (dt_range[1] - dt_range[0]));
      |                                                               ~~~~~~~~~~~~~^~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:503:26: note: 'dt_range[1]' was declared here
  503 |     double img_range[2], dt_range[2], val;
      |                          ^~~~~~~~
Lib/CAT_NiftiLib.c:616:76: warning: 'dt_range[0]' may be used uninitialized [-Wmaybe-uninitialized]
  616 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) / (dt_range[1] - dt_range[0]));
      |                                                               ~~~~~~~~~~~~~^~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:503:26: note: 'dt_range[0]' was declared here
  503 |     double img_range[2], dt_range[2], val;
      |                          ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Ornlm.lo Lib/CAT_Ornlm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Ornlm.c -o Lib/CAT_Ornlm.o
Lib/CAT_Ornlm.c: In function 'ornlm':
Lib/CAT_Ornlm.c:437:17: warning: unused variable 'epsilon' [-Wunused-variable]
  437 |     const float epsilon = 0.00001f;
      |                 ^~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Sanlm.lo Lib/CAT_Sanlm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Sanlm.c -o Lib/CAT_Sanlm.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Sanlm.c: In function 'sanlm':
Lib/CAT_Sanlm.c:760:28: warning: variable 'Ndims' set but not used [-Wunused-but-set-variable=]
  760 |     int vol, slice, label, Ndims, i, j, k, ii, jj, kk, ni, nj, nk, indice, Nthreads, ini, fin, r;
      |                            ^~~~~
Lib/CAT_Sanlm.c:926:28: warning: 'bias' may be used uninitialized [-Wmaybe-uninitialized]
  926 |         ThreadArgs[i].bias = bias;
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~
Lib/CAT_Sanlm.c:756:43: note: 'bias' was declared here
  756 |     float *means, *variances, *Estimate, *bias;
      |                                           ^~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Deform.lo Lib/CAT_Deform.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Deform.c -o Lib/CAT_Deform.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_Deform.c: In function 'surf_deform':
Lib/CAT_Deform.c:270:11: warning: unused variable 'points' [-Wunused-variable]
  270 |     Point points[MAX_POINTS_PER_POLYGON];
      |           ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SPH.lo Lib/CAT_SPH.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SPH.c -o Lib/CAT_SPH.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_SPH.c: In function 'read_SPHxyz':
Lib/CAT_SPH.c:40:22: warning: unused variable 'i' [-Wunused-variable]
   40 |     int bw2, n_dims, i;
      |                      ^
Lib/CAT_SPH.c: In function 'get_sph_coeffs_of_realdata':
Lib/CAT_SPH.c:447:29: warning: unused variable 'n_objects' [-Wunused-variable]
  447 |     int rank, howmany_rank, n_objects, bandwidth2;
      |                             ^~~~~~~~~
Lib/CAT_SPH.c: In function 'get_realdata_from_sph_coeffs':
Lib/CAT_SPH.c:520:29: warning: unused variable 'n_objects' [-Wunused-variable]
  520 |     int rank, howmany_rank, n_objects, bandwidth2;
      |                             ^~~~~~~~~
Lib/CAT_SPH.c: In function 'get_equally_sampled_coords_of_polygon':
Lib/CAT_SPH.c:593:21: warning: unused variable 'ind' [-Wunused-variable]
  593 |     int poly, size, ind, bandwidth2;
      |                     ^~~
Lib/CAT_SPH.c:590:28: warning: unused variable 'radius' [-Wunused-variable]
  590 |     double value, u, v, r, radius;
      |                            ^~~~~~
Lib/CAT_SPH.c:590:25: warning: unused variable 'r' [-Wunused-variable]
  590 |     double value, u, v, r, radius;
      |                         ^
Lib/CAT_SPH.c:590:12: warning: unused variable 'value' [-Wunused-variable]
  590 |     double value, u, v, r, radius;
      |            ^~~~~
Lib/CAT_SPH.c:589:12: warning: unused variable 'j' [-Wunused-variable]
  589 |     int i, j, x, y;
      |            ^
Lib/CAT_SPH.c: In function 'get_equally_sampled_coords_holes':
Lib/CAT_SPH.c:684:21: warning: unused variable 'ind' [-Wunused-variable]
  684 |     int poly, size, ind, bandwidth2;
      |                     ^~~
Lib/CAT_SPH.c:681:28: warning: unused variable 'radius' [-Wunused-variable]
  681 |     double value, u, v, r, radius;
      |                            ^~~~~~
Lib/CAT_SPH.c:681:12: warning: unused variable 'value' [-Wunused-variable]
  681 |     double value, u, v, r, radius;
      |            ^~~~~
Lib/CAT_SPH.c:680:12: warning: unused variable 'j' [-Wunused-variable]
  680 |     int i, j, x, y, *bisected;
      |            ^
Lib/CAT_SPH.c: In function 'create_equally_sampled_unit_sphere':
Lib/CAT_SPH.c:792:21: warning: unused variable 'y' [-Wunused-variable]
  792 |     double u, v, x, y;
      |                     ^
Lib/CAT_SPH.c:792:18: warning: unused variable 'x' [-Wunused-variable]
  792 |     double u, v, x, y;
      |                  ^
Lib/CAT_SPH.c:790:11: warning: unused variable 'unit_point' [-Wunused-variable]
  790 |     Point unit_point;
      |           ^~~~~~~~~~
Lib/CAT_SPH.c: In function 'read_SPHxyz':
Lib/CAT_SPH.c:46:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
   46 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SPH.c:52:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
   52 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SafeAlloc.lo Lib/CAT_SafeAlloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SafeAlloc.c -o Lib/CAT_SafeAlloc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_ArgvCheck.lo Lib/CAT_ArgvCheck.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_ArgvCheck.c -o Lib/CAT_ArgvCheck.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_BBReg.lo Lib/CAT_BBReg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_BBReg.c -o Lib/CAT_BBReg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Lib/CAT_BBReg.c: In function 'CAT_BBReg_optimise':
Lib/CAT_BBReg.c:898:12: warning: unused variable 'step_rad' [-Wunused-variable]
  898 |     double step_rad = (grid_steps > 0) ? grid_range_rad / grid_steps : 0.0;
      |            ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_VolumeReg.lo Lib/CAT_VolumeReg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_VolumeReg.c -o Lib/CAT_VolumeReg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
/bin/sh ./libtool  --tag=CC   --mode=link gcc -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o libCAT.la -rpath /usr/lib64 3rdparty/volume_io/Geometry/colour.lo 3rdparty/volume_io/Geometry/colour_def.lo 3rdparty/volume_io/Geometry/gaussian.lo 3rdparty/volume_io/Geometry/inverse.lo 3rdparty/volume_io/Geometry/newton.lo 3rdparty/volume_io/Geometry/points.lo 3rdparty/volume_io/Geometry/splines.lo 3rdparty/volume_io/Geometry/tensors.lo 3rdparty/volume_io/Geometry/transforms.lo 3rdparty/volume_io/Prog_utils/alloc.lo 3rdparty/volume_io/Prog_utils/alloc_check.lo 3rdparty/volume_io/Prog_utils/arrays.lo 3rdparty/volume_io/Prog_utils/files.lo 3rdparty/volume_io/Prog_utils/print.lo 3rdparty/volume_io/Prog_utils/progress.lo 3rdparty/volume_io/Prog_utils/string.lo 3rdparty/volume_io/Prog_utils/time.lo 3rdparty/bicpl-surface/ParseArgv.lo 3rdparty/bicpl-surface/Data_structures/build_bintree.lo 3rdparty/bicpl-surface/Data_structures/bintree.lo 3rdparty/bicpl-surface/Data_structures/bitlist.lo 3rdparty/bicpl-surface/Data_structures/hash2_table.lo 3rdparty/bicpl-surface/Data_structures/hash_table.lo 3rdparty/bicpl-surface/Data_structures/object_bintrees.lo 3rdparty/bicpl-surface/Data_structures/point_bintree.lo 3rdparty/bicpl-surface/Data_structures/ray_bintree.lo 3rdparty/bicpl-surface/Data_structures/skiplist.lo 3rdparty/bicpl-surface/Geometry/approx_sqrt.lo 3rdparty/bicpl-surface/Geometry/clip_3d.lo 3rdparty/bicpl-surface/Geometry/closest_point.lo 3rdparty/bicpl-surface/Geometry/curvature.lo 3rdparty/bicpl-surface/Geometry/flatten.lo 3rdparty/bicpl-surface/Geometry/geodesic_distance.lo 3rdparty/bicpl-surface/Geometry/geometry.lo 3rdparty/bicpl-surface/Geometry/intersect.lo 3rdparty/bicpl-surface/Geometry/line_circle.lo 3rdparty/bicpl-surface/Geometry/map_polygons.lo 3rdparty/bicpl-surface/Geometry/path_surface.lo 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.lo 3rdparty/bicpl-surface/Geometry/platonics.lo 3rdparty/bicpl-surface/Geometry/points.lo 3rdparty/bicpl-surface/Geometry/poly_dist.lo 3rdparty/bicpl-surface/Geometry/polygon_sphere.lo 3rdparty/bicpl-surface/Geometry/ray_intersect.lo 3rdparty/bicpl-surface/Geometry/segment_polygons.lo 3rdparty/bicpl-surface/Geometry/smooth_curvature.lo 3rdparty/bicpl-surface/Geometry/smooth_lines.lo 3rdparty/bicpl-surface/Geometry/smooth_polygons.lo 3rdparty/bicpl-surface/Geometry/solve_plane.lo 3rdparty/bicpl-surface/Geometry/subdivide_lines.lo 3rdparty/bicpl-surface/Geometry/subdivide_polygons.lo 3rdparty/bicpl-surface/Geometry/surface_area.lo 3rdparty/bicpl-surface/Geometry/tetrahedrons.lo 3rdparty/bicpl-surface/Geometry/tubes.lo 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.lo 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.lo 3rdparty/bicpl-surface/Numerical/amoeba.lo 3rdparty/bicpl-surface/Numerical/gaussian.lo 3rdparty/bicpl-surface/Numerical/gradient_minimize.lo 3rdparty/bicpl-surface/Numerical/histogram.lo 3rdparty/bicpl-surface/Numerical/least_squares.lo 3rdparty/bicpl-surface/Numerical/matrix_svd.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.lo 3rdparty/bicpl-surface/Numerical/numerical.lo 3rdparty/bicpl-surface/Numerical/quadratic.lo 3rdparty/bicpl-surface/Numerical/real_quadratic.lo 3rdparty/bicpl-surface/Numerical/statistics.lo 3rdparty/bicpl-surface/Numerical/t_stat.lo 3rdparty/bicpl-surface/Objects/coalesce.lo 3rdparty/bicpl-surface/Objects/colours.lo 3rdparty/bicpl-surface/Objects/graphics_io.lo 3rdparty/bicpl-surface/Objects/lines.lo 3rdparty/bicpl-surface/Objects/markers.lo 3rdparty/bicpl-surface/Objects/models.lo 3rdparty/bicpl-surface/Objects/object_io.lo 3rdparty/bicpl-surface/Objects/objects.lo 3rdparty/bicpl-surface/Objects/pixels.lo 3rdparty/bicpl-surface/Objects/poly_neighs.lo 3rdparty/bicpl-surface/Objects/polygons.lo 3rdparty/bicpl-surface/Objects/quadmesh.lo 3rdparty/bicpl-surface/Objects/rgb_lookup.lo 3rdparty/bicpl-surface/Objects/tag_objects.lo 3rdparty/bicpl-surface/Objects/text.lo 3rdparty/bicpl-surface/Prog_utils/arguments.lo 3rdparty/bicpl-surface/Prog_utils/globals.lo 3rdparty/bicpl-surface/Prog_utils/time.lo 3rdparty/bicpl-surface/Transforms/compute_tps.lo 3rdparty/bicpl-surface/Transforms/compute_xfm.lo 3rdparty/bicpl-surface/Transforms/matrix_basics.lo 3rdparty/bicpl-surface/Transforms/optimize.lo 3rdparty/bicpl-surface/Transforms/procrustes.lo 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.lo 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.lo 3rdparty/bicpl-surface/Transforms/transform_io.lo 3rdparty/bicpl-surface/Transforms/transforms.lo 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.lo 3rdparty/bicpl-surface/bicpl_clapack/d_sign.lo 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dcopy.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemm.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemv.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.lo 3rdparty/bicpl-surface/bicpl_clapack/dger.lo 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.lo 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.lo 3rdparty/bicpl-surface/bicpl_clapack/dlamch.lo 3rdparty/bicpl-surface/bicpl_clapack/dlange.lo 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarf.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarft.lo 3rdparty/bicpl-surface/bicpl_clapack/dlartg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlas2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlascl.lo 3rdparty/bicpl-surface/bicpl_clapack/dlaset.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasr.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.lo 3rdparty/bicpl-surface/bicpl_clapack/dlassq.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.lo 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorglq.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dormbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorml2.lo 3rdparty/bicpl-surface/bicpl_clapack/dormlq.lo 3rdparty/bicpl-surface/bicpl_clapack/dormqr.lo 3rdparty/bicpl-surface/bicpl_clapack/drot.lo 3rdparty/bicpl-surface/bicpl_clapack/dscal.lo 3rdparty/bicpl-surface/bicpl_clapack/dswap.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.lo 3rdparty/bicpl-surface/bicpl_clapack/exit_.lo 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.lo 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.lo 3rdparty/bicpl-surface/bicpl_clapack/lsame.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_di.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cat.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.lo 3rdparty/bicpl-surface/bicpl_clapack/s_copy.lo 3rdparty/bicpl-surface/bicpl_clapack/xerbla.lo     3rdparty/nii2mesh/quadric.lo 3rdparty/s2kit10/FST_semi_fly.lo 3rdparty/s2kit10/cospmls.lo 3rdparty/s2kit10/makeweights.lo 3rdparty/s2kit10/pmls.lo 3rdparty/s2kit10/seminaive.lo 3rdparty/s2kit10/naive_synthesis.lo 3rdparty/s2kit10/primitive.lo Lib/CAT_CorrectThicknessFolding.lo Lib/CAT_WarpDemons.lo Lib/CAT_ROIStats.lo Lib/CAT_Vol2SurfUtils.lo Lib/CAT_VolPbt.lo Lib/CAT_Sheetness.lo Lib/CAT_PpmSulci.lo Lib/CAT_Calc.lo Lib/CAT_AverageSurf.lo Lib/CAT_AverageValues.lo Lib/CAT_SurfPialWhite.lo Lib/CAT_SurfPialProfile.lo Lib/CAT_SurfLaplacian.lo Lib/CAT_Math.lo Lib/CAT_GlmFormula.lo Lib/CAT_Surf.lo Lib/CAT_SurfInfo.lo Lib/CAT_Warp.lo Lib/CAT_Curvature.lo Lib/CAT_SurfaceIO.lo Lib/CAT_Map.lo Lib/CAT_Smooth.lo Lib/CAT_Intersect.lo Lib/CAT_Octree.lo Lib/CAT_Resample.lo Lib/CAT_Topology.lo Lib/CAT_Defect.lo Lib/CAT_Patch.lo Lib/CAT_Complexity.lo Lib/CAT_Refine.lo Lib/CAT_Interpolate.lo Lib/CAT_Isometrics.lo Lib/CAT_Separate.lo Lib/CAT_ConvexHull.lo Lib/CAT_Gyrification.lo Lib/CAT_DepthPotential.lo Lib/CAT_Vol.lo Lib/CAT_LayerSmooth.lo Lib/CAT_Kmeans.lo Lib/CAT_Amap.lo Lib/CAT_Bmap.lo Lib/CAT_NiftiLib.lo Lib/CAT_Sanlm.lo Lib/CAT_Ornlm.lo Lib/CAT_Deform.lo Lib/CAT_SPH.lo Lib/CAT_SafeAlloc.lo Lib/CAT_ArgvCheck.lo Lib/CAT_BBReg.lo Lib/CAT_VolumeReg.lo -lfftw3 -lgiftiio -lniftiio -lznz 
copying selected object files to avoid basename conflicts...
libtool: link: ln 3rdparty/bicpl-surface/Geometry/points.o .libs/libCAT.lax/lt1-points.o || cp 3rdparty/bicpl-surface/Geometry/points.o .libs/libCAT.lax/lt1-points.o
libtool: link: ln 3rdparty/bicpl-surface/Numerical/gaussian.o .libs/libCAT.lax/lt2-gaussian.o || cp 3rdparty/bicpl-surface/Numerical/gaussian.o .libs/libCAT.lax/lt2-gaussian.o
libtool: link: ln 3rdparty/bicpl-surface/Prog_utils/time.o .libs/libCAT.lax/lt3-time.o || cp 3rdparty/bicpl-surface/Prog_utils/time.o .libs/libCAT.lax/lt3-time.o
libtool: link: ln 3rdparty/bicpl-surface/Transforms/transforms.o .libs/libCAT.lax/lt4-transforms.o || cp 3rdparty/bicpl-surface/Transforms/transforms.o .libs/libCAT.lax/lt4-transforms.o
libtool: link: ar cr .libs/libCAT.a 3rdparty/volume_io/Geometry/colour.o 3rdparty/volume_io/Geometry/colour_def.o 3rdparty/volume_io/Geometry/gaussian.o 3rdparty/volume_io/Geometry/inverse.o 3rdparty/volume_io/Geometry/newton.o 3rdparty/volume_io/Geometry/points.o 3rdparty/volume_io/Geometry/splines.o 3rdparty/volume_io/Geometry/tensors.o 3rdparty/volume_io/Geometry/transforms.o 3rdparty/volume_io/Prog_utils/alloc.o 3rdparty/volume_io/Prog_utils/alloc_check.o 3rdparty/volume_io/Prog_utils/arrays.o 3rdparty/volume_io/Prog_utils/files.o 3rdparty/volume_io/Prog_utils/print.o 3rdparty/volume_io/Prog_utils/progress.o 3rdparty/volume_io/Prog_utils/string.o 3rdparty/volume_io/Prog_utils/time.o 3rdparty/bicpl-surface/ParseArgv.o 3rdparty/bicpl-surface/Data_structures/build_bintree.o 3rdparty/bicpl-surface/Data_structures/bintree.o 3rdparty/bicpl-surface/Data_structures/bitlist.o 3rdparty/bicpl-surface/Data_structures/hash2_table.o 3rdparty/bicpl-surface/Data_structures/hash_table.o 3rdparty/bicpl-surface/Data_structures/object_bintrees.o 3rdparty/bicpl-surface/Data_structures/point_bintree.o 3rdparty/bicpl-surface/Data_structures/ray_bintree.o 3rdparty/bicpl-surface/Data_structures/skiplist.o 3rdparty/bicpl-surface/Geometry/approx_sqrt.o 3rdparty/bicpl-surface/Geometry/clip_3d.o 3rdparty/bicpl-surface/Geometry/closest_point.o 3rdparty/bicpl-surface/Geometry/curvature.o 3rdparty/bicpl-surface/Geometry/flatten.o 3rdparty/bicpl-surface/Geometry/geodesic_distance.o 3rdparty/bicpl-surface/Geometry/geometry.o 3rdparty/bicpl-surface/Geometry/intersect.o 3rdparty/bicpl-surface/Geometry/line_circle.o 3rdparty/bicpl-surface/Geometry/map_polygons.o 3rdparty/bicpl-surface/Geometry/path_surface.o 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.o 3rdparty/bicpl-surface/Geometry/platonics.o .libs/libCAT.lax/lt1-points.o 3rdparty/bicpl-surface/Geometry/poly_dist.o 3rdparty/bicpl-surface/Geometry/polygon_sphere.o 3rdparty/bicpl-surface/Geometry/ray_intersect.o 3rdparty/bicpl-surface/Geometry/segment_polygons.o 3rdparty/bicpl-surface/Geometry/smooth_curvature.o 3rdparty/bicpl-surface/Geometry/smooth_lines.o 3rdparty/bicpl-surface/Geometry/smooth_polygons.o 3rdparty/bicpl-surface/Geometry/solve_plane.o 3rdparty/bicpl-surface/Geometry/subdivide_lines.o 3rdparty/bicpl-surface/Geometry/subdivide_polygons.o 3rdparty/bicpl-surface/Geometry/surface_area.o 3rdparty/bicpl-surface/Geometry/tetrahedrons.o 3rdparty/bicpl-surface/Geometry/tubes.o 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.o 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.o 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.o 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.o 3rdparty/bicpl-surface/Numerical/amoeba.o .libs/libCAT.lax/lt2-gaussian.o 3rdparty/bicpl-surface/Numerical/gradient_minimize.o 3rdparty/bicpl-surface/Numerical/histogram.o 3rdparty/bicpl-surface/Numerical/least_squares.o 3rdparty/bicpl-surface/Numerical/matrix_svd.o 3rdparty/bicpl-surface/Numerical/minimize_lsq.o 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.o 3rdparty/bicpl-surface/Numerical/numerical.o 3rdparty/bicpl-surface/Numerical/quadratic.o 3rdparty/bicpl-surface/Numerical/real_quadratic.o 3rdparty/bicpl-surface/Numerical/statistics.o 3rdparty/bicpl-surface/Numerical/t_stat.o 3rdparty/bicpl-surface/Objects/coalesce.o 3rdparty/bicpl-surface/Objects/colours.o 3rdparty/bicpl-surface/Objects/graphics_io.o 3rdparty/bicpl-surface/Objects/lines.o 3rdparty/bicpl-surface/Objects/markers.o 3rdparty/bicpl-surface/Objects/models.o 3rdparty/bicpl-surface/Objects/object_io.o 3rdparty/bicpl-surface/Objects/objects.o 3rdparty/bicpl-surface/Objects/pixels.o 3rdparty/bicpl-surface/Objects/poly_neighs.o 3rdparty/bicpl-surface/Objects/polygons.o 3rdparty/bicpl-surface/Objects/quadmesh.o 3rdparty/bicpl-surface/Objects/rgb_lookup.o 3rdparty/bicpl-surface/Objects/tag_objects.o 3rdparty/bicpl-surface/Objects/text.o 3rdparty/bicpl-surface/Prog_utils/arguments.o 3rdparty/bicpl-surface/Prog_utils/globals.o .libs/libCAT.lax/lt3-time.o 3rdparty/bicpl-surface/Transforms/compute_tps.o 3rdparty/bicpl-surface/Transforms/compute_xfm.o 3rdparty/bicpl-surface/Transforms/matrix_basics.o 3rdparty/bicpl-surface/Transforms/optimize.o 3rdparty/bicpl-surface/Transforms/procrustes.o 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.o 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.o 3rdparty/bicpl-surface/Transforms/transform_io.o .libs/libCAT.lax/lt4-transforms.o 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.o 3rdparty/bicpl-surface/bicpl_clapack/d_sign.o 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.o 3rdparty/bicpl-surface/bicpl_clapack/dcopy.o 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.o 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.o 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.o 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.o 3rdparty/bicpl-surface/bicpl_clapack/dgemm.o 3rdparty/bicpl-surface/bicpl_clapack/dgemv.o 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.o 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.o 3rdparty/bicpl-surface/bicpl_clapack/dger.o 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.o 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.o 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.o 3rdparty/bicpl-surface/bicpl_clapack/dlamch.o 3rdparty/bicpl-surface/bicpl_clapack/dlange.o 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.o 3rdparty/bicpl-surface/bicpl_clapack/dlarf.o 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.o 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.o 3rdparty/bicpl-surface/bicpl_clapack/dlarft.o 3rdparty/bicpl-surface/bicpl_clapack/dlartg.o 3rdparty/bicpl-surface/bicpl_clapack/dlas2.o 3rdparty/bicpl-surface/bicpl_clapack/dlascl.o 3rdparty/bicpl-surface/bicpl_clapack/dlaset.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.o 3rdparty/bicpl-surface/bicpl_clapack/dlasr.o 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.o 3rdparty/bicpl-surface/bicpl_clapack/dlassq.o 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.o 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.o 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.o 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.o 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.o 3rdparty/bicpl-surface/bicpl_clapack/dorglq.o 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.o 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.o 3rdparty/bicpl-surface/bicpl_clapack/dormbr.o 3rdparty/bicpl-surface/bicpl_clapack/dorml2.o 3rdparty/bicpl-surface/bicpl_clapack/dormlq.o 3rdparty/bicpl-surface/bicpl_clapack/dormqr.o 3rdparty/bicpl-surface/bicpl_clapack/drot.o 3rdparty/bicpl-surface/bicpl_clapack/dscal.o 3rdparty/bicpl-surface/bicpl_clapack/dswap.o 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.o 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.o 3rdparty/bicpl-surface/bicpl_clapack/exit_.o 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.o 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.o 3rdparty/bicpl-surface/bicpl_clapack/lsame.o 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.o 3rdparty/bicpl-surface/bicpl_clapack/pow_di.o 3rdparty/bicpl-surface/bicpl_clapack/s_cat.o 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.o 3rdparty/bicpl-surface/bicpl_clapack/s_copy.o 3rdparty/bicpl-surface/bicpl_clapack/xerbla.o 3rdparty/nii2mesh/quadric.o 3rdparty/s2kit10/FST_semi_fly.o 3rdparty/s2kit10/cospmls.o 3rdparty/s2kit10/makeweights.o 3rdparty/s2kit10/pmls.o 3rdparty/s2kit10/seminaive.o 3rdparty/s2kit10/naive_synthesis.o 3rdparty/s2kit10/primitive.o Lib/CAT_CorrectThicknessFolding.o Lib/CAT_WarpDemons.o Lib/CAT_ROIStats.o Lib/CAT_Vol2SurfUtils.o Lib/CAT_VolPbt.o Lib/CAT_Sheetness.o Lib/CAT_PpmSulci.o Lib/CAT_Calc.o Lib/CAT_AverageSurf.o Lib/CAT_AverageValues.o Lib/CAT_SurfPialWhite.o Lib/CAT_SurfPialProfile.o Lib/CAT_SurfLaplacian.o Lib/CAT_Math.o Lib/CAT_GlmFormula.o Lib/CAT_Surf.o Lib/CAT_SurfInfo.o Lib/CAT_Warp.o Lib/CAT_Curvature.o Lib/CAT_SurfaceIO.o Lib/CAT_Map.o Lib/CAT_Smooth.o Lib/CAT_Intersect.o Lib/CAT_Octree.o Lib/CAT_Resample.o Lib/CAT_Topology.o Lib/CAT_Defect.o Lib/CAT_Patch.o Lib/CAT_Complexity.o Lib/CAT_Refine.o Lib/CAT_Interpolate.o Lib/CAT_Isometrics.o Lib/CAT_Separate.o Lib/CAT_ConvexHull.o Lib/CAT_Gyrification.o Lib/CAT_DepthPotential.o Lib/CAT_Vol.o Lib/CAT_LayerSmooth.o Lib/CAT_Kmeans.o Lib/CAT_Amap.o Lib/CAT_Bmap.o Lib/CAT_NiftiLib.o Lib/CAT_Sanlm.o Lib/CAT_Ornlm.o Lib/CAT_Deform.o Lib/CAT_SPH.o Lib/CAT_SafeAlloc.o Lib/CAT_ArgvCheck.o Lib/CAT_BBReg.o Lib/CAT_VolumeReg.o
libtool: link: ranlib .libs/libCAT.a
libtool: link: rm -fr .libs/libCAT.lax
libtool: link: ( cd ".libs" && rm -f "libCAT.la" && ln -s "../libCAT.la" "libCAT.la" )
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Making all in Progs
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSheet2Surf.o CAT_SurfSheet2Surf.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSheet2Surf.c: In function ‘main’:
CAT_SurfSheet2Surf.c:38:23: warning: unused variable ‘n_done’ [-Wunused-variable]
   38 |     int          ind, n_done, interpolate;
      |                       ^~~~~~
CAT_SurfSheet2Surf.c:38:18: warning: unused variable ‘ind’ [-Wunused-variable]
   38 |     int          ind, n_done, interpolate;
      |                  ^~~
CAT_SurfSheet2Surf.c:37:26: warning: unused variable ‘poly’ [-Wunused-variable]
   37 |     int          degree, poly, size_map[2];
      |                          ^~~~
CAT_SurfSheet2Surf.c:37:18: warning: unused variable ‘degree’ [-Wunused-variable]
   37 |     int          degree, poly, size_map[2];
      |                  ^~~~~~
CAT_SurfSheet2Surf.c:36:18: warning: unused variable ‘i’ [-Wunused-variable]
   36 |     int          i, n_objects;
      |                  ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2Sheet.o CAT_Surf2Sheet.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_Surf2Sheet.c: In function ‘main’:
CAT_Surf2Sheet.c:62:35: warning: unused variable ‘y’ [-Wunused-variable]
   62 |     int          i, n_objects, x, y;
      |                                   ^
CAT_Surf2Sheet.c:62:32: warning: unused variable ‘x’ [-Wunused-variable]
   62 |     int          i, n_objects, x, y;
      |                                ^
CAT_Surf2Sheet.c:134:13: warning: ‘sphere’ may be used uninitialized [-Wmaybe-uninitialized]
  134 |             create_tetrahedral_sphere(&centre, 1.0, 1.0, 1.0, (2 * (n_values-2)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                   sphere);
      |                   ~~~~~~~
CAT_Surf2Sheet.c:61:36: note: ‘sphere’ was declared here
   61 |     polygons_struct    *polygons, *sphere;
      |                                    ^~~~~~
CAT_Surf2Sheet.c:119:61: warning: ‘polygons’ may be used uninitialized [-Wmaybe-uninitialized]
  119 |         values = (double *) malloc(sizeof(double) * polygons->n_points);
      |                                                     ~~~~~~~~^~~~~~~~~~
CAT_Surf2Sheet.c:61:25: note: ‘polygons’ was declared here
   61 |     polygons_struct    *polygons, *sphere;
      |                         ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfCurvature.o CAT_SurfCurvature.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfArea.o CAT_SurfArea.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfArea.c: In function ‘main’:
CAT_SurfArea.c:55:23: warning: unused variable ‘point_done’ [-Wunused-variable]
   55 |     signed char      *point_done;
      |                       ^~~~~~~~~~
CAT_SurfArea.c:54:18: warning: unused variable ‘points’ [-Wunused-variable]
   54 |     Point        points[MAX_POINTS_PER_POLYGON];
      |                  ^~~~~~
CAT_SurfArea.c:52:20: warning: unused variable ‘area’ [-Wunused-variable]
   52 |     double         area, surface_area;
      |                    ^~~~
CAT_SurfArea.c:49:18: warning: unused variable ‘poly’ [-Wunused-variable]
   49 |     int          poly, n_objects, i;
      |                  ^~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Vol2Surf.o CAT_Vol2Surf.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_Vol2Surf.c: In function ‘main’:
CAT_Vol2Surf.c:149:51: warning: unused variable ‘n_values’ [-Wunused-variable]
  149 |     int n_objects, n_arrays, n_labels, *in_annot, n_values, dims[3];
      |                                                   ^~~~~~~~
CAT_Vol2Surf.c:528:29: warning: ‘values2d’ may be used uninitialized [-Wmaybe-uninitialized]
  528 |                     values2d[i][j] = (value < frange[0]) ? frange[0] : value;
      |                     ~~~~~~~~^~~
CAT_Vol2Surf.c:155:49: note: ‘values2d’ was declared here
  155 |     double *area_inner, *area_outer, *values, **values2d, *thickness;
      |                                                 ^~~~~~~~
CAT_Vol2Surf.c:503:56: warning: ‘area_inner’ may be used uninitialized [-Wmaybe-uninitialized]
  503 |                         if ((area_outer[i] - area_inner[i]) != 0)
      |                                              ~~~~~~~~~~^~~
CAT_Vol2Surf.c:155:13: note: ‘area_inner’ was declared here
  155 |     double *area_inner, *area_outer, *values, **values2d, *thickness;
      |             ^~~~~~~~~~
CAT_Vol2Surf.c:503:40: warning: ‘area_outer’ may be used uninitialized [-Wmaybe-uninitialized]
  503 |                         if ((area_outer[i] - area_inner[i]) != 0)
      |                              ~~~~~~~~~~^~~
CAT_Vol2Surf.c:155:26: note: ‘area_outer’ was declared here
  155 |     double *area_inner, *area_outer, *values, **values2d, *thickness;
      |                          ^~~~~~~~~~
CAT_Vol2Surf.c:159:13: warning: ‘roi_values’ may be used uninitialized [-Wmaybe-uninitialized]
  159 |     double *roi_values;
      |             ^~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ../Include/CAT_SurfaceIO.h:13,
                 from CAT_Vol2Surf.c:22:
In function ‘fprintf’,
    inlined from ‘main’ at CAT_Vol2Surf.c:578:13:
/usr/include/bits/stdio2.h:111:10: warning: ‘fp’ may be used uninitialized [-Wmaybe-uninitialized]
  111 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
CAT_Vol2Surf.c: In function ‘main’:
CAT_Vol2Surf.c:163:11: note: ‘fp’ was declared here
  163 |     FILE *fp;
      |           ^~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfInfo.o CAT_SurfInfo.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfRatio.o CAT_SurfRatio.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmooth.o CAT_SurfSmooth.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSmooth.c: In function ‘main’:
CAT_SurfSmooth.c:41:26: warning: unused variable ‘neighbours’ [-Wunused-variable]
   41 |     int *n_neighbours, **neighbours;
      |                          ^~~~~~~~~~
CAT_SurfSmooth.c:41:10: warning: unused variable ‘n_neighbours’ [-Wunused-variable]
   41 |     int *n_neighbours, **neighbours;
      |          ^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfPlotValuesAtPoint.o CAT_SurfPlotValuesAtPoint.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfPlotValuesAtPoint.c: In function ‘main’:
CAT_SurfPlotValuesAtPoint.c:38:28: warning: unused variable ‘value’ [-Wunused-variable]
   38 |     double dist, min_dist, value;
      |                            ^~~~~
CAT_SurfPlotValuesAtPoint.c:33:9: warning: unused variable ‘poly’ [-Wunused-variable]
   33 |     int poly, n_objects, pidx, min_index, n_files;
      |         ^~~~
CAT_SurfPlotValuesAtPoint.c:106:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  106 |             fgets(line, 256, infp);
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from CAT_SurfPlotValuesAtPoint.c:10:
In function ‘printf’,
    inlined from ‘main’ at CAT_SurfPlotValuesAtPoint.c:99:5:
/usr/include/bits/stdio2.h:118:10: warning: ‘min_index’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfPlotValuesAtPoint.c: In function ‘main’:
CAT_SurfPlotValuesAtPoint.c:33:32: note: ‘min_index’ was declared here
   33 |     int poly, n_objects, pidx, min_index, n_files;
      |                                ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfPlotValuesAtMaximum.o CAT_SurfPlotValuesAtMaximum.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfPlotValuesAtMaximum.c: In function ‘main’:
CAT_SurfPlotValuesAtMaximum.c:33:22: warning: unused variable ‘output_value’ [-Wunused-variable]
   33 |     double           output_value, *values, max_value;
      |                      ^~~~~~~~~~~~
CAT_SurfPlotValuesAtMaximum.c:32:40: warning: unused variable ‘j’ [-Wunused-variable]
   32 |     int          n_files, n_values, i, j, max_index;
      |                                        ^
CAT_SurfPlotValuesAtMaximum.c:31:22: warning: unused variable ‘format’ [-Wunused-variable]
   31 |     File_formats     format;
      |                      ^~~~~~
CAT_SurfPlotValuesAtMaximum.c:30:19: warning: unused variable ‘infp’ [-Wunused-variable]
   30 |     FILE         *infp, *outfp;
      |                   ^~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from CAT_SurfPlotValuesAtMaximum.c:10:
In function ‘fprintf’,
    inlined from ‘main’ at CAT_SurfPlotValuesAtMaximum.c:66:5:
/usr/include/bits/stdio2.h:111:10: warning: ‘max_index’ may be used uninitialized [-Wmaybe-uninitialized]
  111 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
CAT_SurfPlotValuesAtMaximum.c: In function ‘main’:
CAT_SurfPlotValuesAtMaximum.c:32:43: note: ‘max_index’ was declared here
   32 |     int          n_files, n_values, i, j, max_index;
      |                                           ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfMeasure2Txt.o CAT_SurfMeasure2Txt.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfMeasure2Txt.c: In function ‘main’:
CAT_SurfMeasure2Txt.c:29:22: warning: unused variable ‘format’ [-Wunused-variable]
   29 |     File_formats     format;
      |                      ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfConvert.o CAT_SurfConvert.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfConvert.c: In function ‘main’:
CAT_SurfConvert.c:38:23: warning: unused variable ‘done_flags’ [-Wunused-variable]
   38 |     signed char      *done_flags;
      |                       ^~~~~~~~~~
CAT_SurfConvert.c:37:25: warning: unused variable ‘polygons’ [-Wunused-variable]
   37 |     polygons_struct    *polygons;
      |                         ^~~~~~~~
CAT_SurfConvert.c:35:18: warning: unused variable ‘status’ [-Wunused-variable]
   35 |     int          status, n_objects;
      |                  ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2Sphere.o CAT_Surf2Sphere.c
CAT_Surf2Sphere.c: In function ‘main’:
CAT_Surf2Sphere.c:50:12: warning: unused variable ‘surfarea’ [-Wunused-variable]
   50 |     double surfarea;
      |            ^~~~~~~~
CAT_Surf2Sphere.c:49:9: warning: unused variable ‘fingerSmoothingIters’ [-Wunused-variable]
   49 |     int fingerSmoothingIters;
      |         ^~~~~~~~~~~~~~~~~~~~
CAT_Surf2Sphere.c:48:13: warning: unused variable ‘enableFingerSmoothing’ [-Wunused-variable]
   48 |     BOOLEAN enableFingerSmoothing = 1;
      |             ^~~~~~~~~~~~~~~~~~~~~
CAT_Surf2Sphere.c:44:20: warning: unused variable ‘i’ [-Wunused-variable]
   44 |     int n_objects, i, stop_at, verbose;
      |                    ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSeparatePolygons.o CAT_SurfSeparatePolygons.c
CAT_SurfSeparatePolygons.c: In function ‘main’:
CAT_SurfSeparatePolygons.c:34:46: warning: unused variable ‘object2’ [-Wunused-variable]
   34 |     object_struct  **object_list, **object, *object2;
      |                                              ^~~~~~~
CAT_SurfSeparatePolygons.c:32:16: warning: unused variable ‘i’ [-Wunused-variable]
   32 |     int        i, desired_index;
      |                ^
CAT_SurfSeparatePolygons.c:30:16: warning: unused variable ‘out_file’ [-Wunused-variable]
   30 |     char       out_file[512];
      |                ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSeparateClusters.o CAT_SurfSeparateClusters.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSeparateClusters.c: In function ‘make_connected_components_values’:
CAT_SurfSeparateClusters.c:36:24: warning: unused variable ‘queue’ [-Wunused-variable]
   36 |     QUEUE_STRUCT(int)  queue;
      |                        ^~~~~
CAT_SurfSeparateClusters.c:33:18: warning: unused variable ‘neigh’ [-Wunused-variable]
   33 |     int          neigh, j;
      |                  ^~~~~
CAT_SurfSeparateClusters.c:32:31: warning: unused variable ‘size’ [-Wunused-variable]
   32 |     int          point, edge, size;
      |                               ^~~~
CAT_SurfSeparateClusters.c:32:25: warning: unused variable ‘edge’ [-Wunused-variable]
   32 |     int          point, edge, size;
      |                         ^~~~
CAT_SurfSeparateClusters.c: In function ‘separate_cluster’:
CAT_SurfSeparateClusters.c:81:35: warning: unused variable ‘c’ [-Wunused-variable]
   81 |     int     *new_point_ids, comp, c;
      |                                   ^
CAT_SurfSeparateClusters.c:81:29: warning: unused variable ‘comp’ [-Wunused-variable]
   81 |     int     *new_point_ids, comp, c;
      |                             ^~~~
CAT_SurfSeparateClusters.c:81:14: warning: unused variable ‘new_point_ids’ [-Wunused-variable]
   81 |     int     *new_point_ids, comp, c;
      |              ^~~~~~~~~~~~~
CAT_SurfSeparateClusters.c:80:40: warning: unused variable ‘size’ [-Wunused-variable]
   80 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                                        ^~~~
CAT_SurfSeparateClusters.c:80:32: warning: unused variable ‘vertex’ [-Wunused-variable]
   80 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                                ^~~~~~
CAT_SurfSeparateClusters.c:80:25: warning: unused variable ‘point’ [-Wunused-variable]
   80 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                         ^~~~~
CAT_SurfSeparateClusters.c:80:18: warning: unused variable ‘p_ind’ [-Wunused-variable]
   80 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                  ^~~~~
CAT_SurfSeparateClusters.c:80:13: warning: unused variable ‘ind’ [-Wunused-variable]
   80 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |             ^~~
CAT_SurfSeparateClusters.c: In function ‘main’:
CAT_SurfSeparateClusters.c:120:16: warning: unused variable ‘out_file’ [-Wunused-variable]
  120 |     char       out_file[512];
      |                ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResampleSpherical.o CAT_SurfResampleSpherical.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfResampleSpherical.c: In function ‘main’:
CAT_SurfResampleSpherical.c:44:49: warning: unused variable ‘dist’ [-Wunused-variable]
   44 |     double       *input_values, *output_values, dist;
      |                                                 ^~~~
CAT_SurfResampleSpherical.c:36:32: warning: unused variable ‘n_intersections’ [-Wunused-variable]
   36 |     int        poly, n_points, n_intersections, n_values;
      |                                ^~~~~~~~~~~~~~~
CAT_SurfResampleSpherical.c:35:19: warning: unused variable ‘j’ [-Wunused-variable]
   35 |     int        i, j, k;
      |                   ^
CAT_SurfResampleSpherical.c:33:27: warning: unused variable ‘point’ [-Wunused-variable]
   33 |     int        n_objects, point;
      |                           ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResample.o CAT_SurfResample.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAreaDistortion.o CAT_SurfAreaDistortion.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfAreaDistortion.c: In function ‘main’:
CAT_SurfAreaDistortion.c:163:12: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
  163 |         if (value < PINF && value > NINF)
      |            ^
CAT_SurfAreaDistortion.c:60:38: note: ‘value’ was declared here
   60 |     double        *ad_values, ratio, value;
      |                                      ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResampleMulti.o CAT_SurfResampleMulti.c
CAT_SurfResampleMulti.c: In function ‘concat_many’:
CAT_SurfResampleMulti.c:191:9: warning: variable ‘idx_off’ set but not used [-Wunused-but-set-variable=]
  191 |     int idx_off = 0;
      |         ^~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAngularDistortion.o CAT_SurfAngularDistortion.c
CAT_SurfAngularDistortion.c: In function ‘main’:
CAT_SurfAngularDistortion.c:106:28: warning: unused variable ‘p’ [-Wunused-variable]
  106 |     int          i, tp[3], p, size, poly;
      |                            ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfMetricDistortion.o CAT_SurfMetricDistortion.c
CAT_SurfMetricDistortion.c: In function ‘dijkstra_dist’:
CAT_SurfMetricDistortion.c:90:12: warning: ‘cur_p’ may be used uninitialized [-Wmaybe-uninitialized]
   90 |     visited[cur_p] = 1;
      |            ^
CAT_SurfMetricDistortion.c:57:21: note: ‘cur_p’ was declared here
   57 |     int i, n, nidx, cur_p;
      |                     ^~~~~
CAT_SurfMetricDistortion.c:91:8: warning: ‘setidx’ may be used uninitialized [-Wmaybe-uninitialized]
   91 |     set[setidx] = set[setsize - 1]; /* remove it from working set */
      |        ^
CAT_SurfMetricDistortion.c:61:24: note: ‘setidx’ was declared here
   61 |     int *set, setsize, setidx;
      |                        ^~~~~~
CAT_SurfMetricDistortion.c: In function ‘main’:
CAT_SurfMetricDistortion.c:290:28: warning: ‘visited’ may be used uninitialized [-Wmaybe-uninitialized]
  290 |                 visited[n] = 0;
      |                 ~~~~~~~~~~~^~~
CAT_SurfMetricDistortion.c:167:20: note: ‘visited’ was declared here
  167 |     unsigned char *visited, *pointset;
      |                    ^~~~~~~
CAT_SurfMetricDistortion.c:280:29: warning: ‘geo_dist’ may be used uninitialized [-Wmaybe-uninitialized]
  280 |                 geo_dist[n] = geo_dist2[n] = PINF;
      |                             ^
CAT_SurfMetricDistortion.c:168:13: note: ‘geo_dist’ was declared here
  168 |     double *geo_dist, *geo_dist2;
      |             ^~~~~~~~
CAT_SurfMetricDistortion.c:280:44: warning: ‘geo_dist2’ may be used uninitialized [-Wmaybe-uninitialized]
  280 |                 geo_dist[n] = geo_dist2[n] = PINF;
      |                                            ^
CAT_SurfMetricDistortion.c:168:24: note: ‘geo_dist2’ was declared here
  168 |     double *geo_dist, *geo_dist2;
      |                        ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAverage.o CAT_SurfAverage.c
CAT_SurfAverage.c: In function ‘main’:
CAT_SurfAverage.c:42:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable=]
   42 |     Status       status;
      |                  ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfValuesAverage.o CAT_SurfValuesAverage.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfFixTopology.o CAT_SurfFixTopology.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfIsometize.o CAT_SurfIsometize.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSphericalDemon.o CAT_SurfSphericalDemon.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothAreal.o CAT_SurfSmoothAreal.c
CAT_SurfSmoothAreal.c: In function ‘main’:
CAT_SurfSmoothAreal.c:24:18: warning: unused variable ‘poly’ [-Wunused-variable]
   24 |     int          poly, n_objects, n_iters;
      |                  ^~~~
CAT_SurfSmoothAreal.c:22:19: warning: unused variable ‘file’ [-Wunused-variable]
   22 |     FILE         *file;
      |                   ^~~~
CAT_SurfSmoothAreal.c:21:37: warning: unused variable ‘object2_filename’ [-Wunused-variable]
   21 |     STRING         object_filename, object2_filename, output_filename;
      |                                     ^~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothLaplacian.o CAT_SurfSmoothLaplacian.c
CAT_SurfSmoothLaplacian.c: In function ‘main’:
CAT_SurfSmoothLaplacian.c:55:34: warning: unused variable ‘polygons_orig’ [-Wunused-variable]
   55 |     polygons_struct  *polygons, *polygons_orig;
      |                                  ^~~~~~~~~~~~~
CAT_SurfSmoothLaplacian.c:52:19: warning: unused variable ‘p’ [-Wunused-variable]
   52 |     int        i, p, n_objects;
      |                   ^
CAT_SurfSmoothLaplacian.c:52:16: warning: unused variable ‘i’ [-Wunused-variable]
   52 |     int        i, p, n_objects;
      |                ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothConvexity.o CAT_SurfSmoothConvexity.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothSharpness.o CAT_SurfSmoothSharpness.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSharpness.o CAT_SurfSharpness.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSharpness.c: In function ‘main’:
CAT_SurfSharpness.c:30:19: warning: unused variable ‘fp’ [-Wunused-variable]
   30 |     FILE         *fp;
      |                   ^~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfHausdorff.o CAT_SurfHausdorff.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfHausdorff.c: In function ‘main’:
CAT_SurfHausdorff.c:40:20: warning: variable ‘max_hd’ set but not used [-Wunused-but-set-variable=]
   40 |     double         max_hd = 0, *hd;
      |                    ^~~~~~
CAT_SurfHausdorff.c:37:18: warning: unused variable ‘i’ [-Wunused-variable]
   37 |     int          i;
      |                  ^
CAT_SurfHausdorff.c:34:19: warning: unused variable ‘fp’ [-Wunused-variable]
   34 |     FILE         *fp;
      |                   ^~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSelfIntersect.o CAT_SurfSelfIntersect.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSelfIntersect.c: In function ‘main’:
CAT_SurfSelfIntersect.c:44:11: warning: unused variable ‘fp’ [-Wunused-variable]
   44 |     FILE *fp;
      |           ^~
CAT_SurfSelfIntersect.c:43:21: warning: unused variable ‘progress’ [-Wunused-variable]
   43 |     progress_struct progress;
      |                     ^~~~~~~~
CAT_SurfSelfIntersect.c:42:10: warning: unused variable ‘str’ [-Wunused-variable]
   42 |     char str[80];
      |          ^~~
CAT_SurfSelfIntersect.c:41:34: warning: unused variable ‘i’ [-Wunused-variable]
   41 |     int n_objects, n_intersects, i;
      |                                  ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfFixSelfIntersect.o CAT_SurfFixSelfIntersect.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfArtifacts.o CAT_SurfArtifacts.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfArtifacts.c: In function ‘main’:
CAT_SurfArtifacts.c:51:18: warning: unused variable ‘str’ [-Wunused-variable]
   51 |     char         str[80];
      |                  ^~~
CAT_SurfArtifacts.c:48:18: warning: unused variable ‘p’ [-Wunused-variable]
   48 |     int          p, n_objects, n_artifacts, *artifacts;
      |                  ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfMarkDefects.o CAT_SurfMarkDefects.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfMarkDefects.c: In function ‘main’:
CAT_SurfMarkDefects.c:57:44: warning: variable ‘patch’ set but not used [-Wunused-but-set-variable=]
   57 |     polygons_struct    *surface, *sphere, *patch;
      |                                            ^~~~~
CAT_SurfMarkDefects.c:55:54: warning: unused variable ‘polydefects’ [-Wunused-variable]
   55 |     int          p, n_objects, n_defects, *defects, *polydefects;
      |                                                      ^~~~~~~~~~~
CAT_SurfMarkDefects.c:149:18: warning: ‘defect_size’ may be used uninitialized [-Wmaybe-uninitialized]
  149 |     if(get_size) free(defect_size);
      |                  ^~~~~~~~~~~~~~~~~
CAT_SurfMarkDefects.c:56:21: note: ‘defect_size’ was declared here
   56 |     double         *defect_size;
      |                     ^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfRefine.o CAT_SurfRefine.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfFractalDimension.o CAT_SurfFractalDimension.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfConvexity.o CAT_SurfConvexity.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfConvexity.c: In function ‘main’:
CAT_SurfConvexity.c:23:18: warning: unused variable ‘poly’ [-Wunused-variable]
   23 |     int          poly, n_objects, **neighbours, *n_neighbours;
      |                  ^~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAddValues.o CAT_SurfAddValues.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfAddValues.c: In function ‘main’:
CAT_SurfAddValues.c:43:21: warning: unused variable ‘p’ [-Wunused-variable]
   43 |     int          i, p, n_objects, n_pts, n_values;
      |                     ^
CAT_SurfAddValues.c:43:18: warning: unused variable ‘i’ [-Wunused-variable]
   43 |     int          i, p, n_objects, n_pts, n_values;
      |                  ^
CAT_SurfAddValues.c:40:20: warning: unused variable ‘value’ [-Wunused-variable]
   40 |     double         value, *values;
      |                    ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSulcusDepth.o CAT_SurfSulcusDepth.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSulcusDepth.c: In function ‘main’:
CAT_SurfSulcusDepth.c:47:18: warning: unused variable ‘points’ [-Wunused-variable]
   47 |     Point        points[MAX_POINTS_PER_POLYGON];
      |                  ^~~~~~
CAT_SurfSulcusDepth.c:45:36: warning: variable ‘sphere’ set but not used [-Wunused-but-set-variable=]
   45 |     polygons_struct    *polygons, *sphere;
      |                                    ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfDepthPotential.o CAT_SurfDepthPotential.c
CAT_SurfDepthPotential.c: In function ‘main’:
CAT_SurfDepthPotential.c:29:9: warning: unused variable ‘poly’ [-Wunused-variable]
   29 |     int poly, n_objects;
      |         ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2ConvexHull.o CAT_Surf2ConvexHull.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_Surf2ConvexHull.c: In function ‘main’:
CAT_Surf2ConvexHull.c:38:43: warning: variable ‘convex’ set but not used [-Wunused-but-set-variable=]
   38 |     polygons_struct  *polygons, *sphere, *convex;
      |                                           ^~~~~~
CAT_Surf2ConvexHull.c:35:27: warning: unused variable ‘i’ [-Wunused-variable]
   35 |     int        n_objects, i;
      |                           ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfCentral2Pial.o CAT_SurfCentral2Pial.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfCentral2Pial.c: In function ‘main’:
CAT_SurfCentral2Pial.c:59:18: warning: unused variable ‘nii_ptr’ [-Wunused-variable]
   59 |     nifti_image *nii_ptr;
      |                  ^~~~~~~
CAT_SurfCentral2Pial.c:55:19: warning: variable ‘surface_area’ set but not used [-Wunused-but-set-variable=]
   55 |     double value, surface_area, pos;
      |                   ^~~~~~~~~~~~
CAT_SurfCentral2Pial.c:55:12: warning: unused variable ‘value’ [-Wunused-variable]
   55 |     double value, surface_area, pos;
      |            ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfDistance.o CAT_SurfDistance.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfDistance.c: In function ‘main’:
CAT_SurfDistance.c:66:11: warning: unused variable ‘fp’ [-Wunused-variable]
   66 |     FILE *fp;
      |           ^~
CAT_SurfDistance.c:63:19: warning: variable ‘max_distance’ set but not used [-Wunused-but-set-variable=]
   63 |     double shift, max_distance = 0;
      |                   ^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothDiffusion.o CAT_SurfSmoothDiffusion.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfSmoothDiffusion.c: In function ‘main’:
CAT_SurfSmoothDiffusion.c:65:18: warning: unused variable ‘distance’ [-Wunused-variable]
   65 |     double       distance, *values, *mask;
      |                  ^~~~~~~~
CAT_SurfSmoothDiffusion.c:61:19: warning: unused variable ‘p’ [-Wunused-variable]
   61 |     int        i, p, n_objects, n_values, n_mask;
      |                   ^
CAT_SurfSmoothDiffusion.c:157:9: warning: ‘polygons_orig’ may be used uninitialized [-Wmaybe-uninitialized]
  157 |         free(polygons_orig);
      |         ^~~~~~~~~~~~~~~~~~~
CAT_SurfSmoothDiffusion.c:64:34: note: ‘polygons_orig’ was declared here
   64 |     polygons_struct  *polygons, *polygons_orig;
      |                                  ^~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_GlmEstimate.o CAT_GlmEstimate.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolAmap.o CAT_VolAmap.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_VolAmap.c: In function ‘main’:
CAT_VolAmap.c:164:46: warning: unused variable ‘var’ [-Wunused-variable]
  164 |     double mean[MAX_NC], mu[n_pure_classes], var[n_pure_classes];
      |                                              ^~~
CAT_VolAmap.c:164:26: warning: variable ‘mu’ set but not used [-Wunused-but-set-variable=]
  164 |     double mean[MAX_NC], mu[n_pure_classes], var[n_pure_classes];
      |                          ^~
CAT_VolAmap.c:163:19: warning: unused variable ‘val’ [-Wunused-variable]
  163 |     double slope, val, voxelsize[3];
      |                   ^~~
CAT_VolAmap.c:161:11: warning: unused variable ‘arg_string’ [-Wunused-variable]
  161 |     char *arg_string, buffer[1024];
      |           ^~~~~~~~~~
CAT_VolAmap.c:160:26: warning: unused variable ‘y_dims’ [-Wunused-variable]
  160 |     int x, y, z, z_area, y_dims;
      |                          ^~~~~~
CAT_VolAmap.c:160:18: warning: unused variable ‘z_area’ [-Wunused-variable]
  160 |     int x, y, z, z_area, y_dims;
      |                  ^~~~~~
CAT_VolAmap.c:160:15: warning: unused variable ‘z’ [-Wunused-variable]
  160 |     int x, y, z, z_area, y_dims;
      |               ^
CAT_VolAmap.c:160:12: warning: unused variable ‘y’ [-Wunused-variable]
  160 |     int x, y, z, z_area, y_dims;
      |            ^
CAT_VolAmap.c:160:9: warning: unused variable ‘x’ [-Wunused-variable]
  160 |     int x, y, z, z_area, y_dims;
      |         ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolAverage.o CAT_VolAverage.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_VolAverage.c: In function ‘main’:
CAT_VolAverage.c:169:27: warning: ‘zscore’ may be used uninitialized [-Wmaybe-uninitialized]
  169 |                 zscore[i] = 0.0;
      |                 ~~~~~~~~~~^~~~~
CAT_VolAverage.c:45:55: note: ‘zscore’ was declared here
   45 |     double *avg, *sum_squares, *input, voxelsize[3], *zscore;
      |                                                       ^~~~~~
CAT_VolAverage.c:132:28: warning: ‘sum_squares’ may be used uninitialized [-Wmaybe-uninitialized]
  132 |                 sum_squares[j] += input[j]*input[j];
      |                 ~~~~~~~~~~~^~~
CAT_VolAverage.c:45:19: note: ‘sum_squares’ was declared here
   45 |     double *avg, *sum_squares, *input, voxelsize[3], *zscore;
      |                   ^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolSmooth.o CAT_VolSmooth.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolSanlm.o CAT_VolSanlm.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_VolSanlm.c: In function ‘main’:
CAT_VolSanlm.c:74:12: warning: unused variable ‘j’ [-Wunused-variable]
   74 |     int i, j, dims[3];
      |            ^
CAT_VolSanlm.c:74:9: warning: unused variable ‘i’ [-Wunused-variable]
   74 |     int i, j, dims[3];
      |         ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolOrnlm.o CAT_VolOrnlm.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolLocalStat.o CAT_VolLocalStat.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolThicknessPbt.o CAT_VolThicknessPbt.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolSheetness.o CAT_VolSheetness.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolCalc.o CAT_VolCalc.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolLayerSmooth.o CAT_VolLayerSmooth.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_VolLayerSmooth.c: In function ‘main’:
CAT_VolLayerSmooth.c:201:61: warning: ‘depth_’ directive output may be truncated writing 6 bytes into a region of size between 1 and 1024 [-Wformat-truncation=]
  201 |         snprintf(debug_filename, sizeof(debug_filename), "%sdepth_%s", dir_part, base);
      |                                                             ^~~~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from CAT_VolLayerSmooth.c:18:
In function ‘snprintf’,
    inlined from ‘main’ at CAT_VolLayerSmooth.c:201:9:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output 7 or more bytes (assuming 1030) into a destination of size 1024
   68 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   70 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
CAT_VolLayerSmooth.c: In function ‘main’:
CAT_VolLayerSmooth.c:208:61: warning: ‘distWM_’ directive output may be truncated writing 7 bytes into a region of size between 1 and 1024 [-Wformat-truncation=]
  208 |         snprintf(debug_filename, sizeof(debug_filename), "%sdistWM_%s", dir_part, base);
      |                                                             ^~~~~~~
In function ‘snprintf’,
    inlined from ‘main’ at CAT_VolLayerSmooth.c:208:9:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output 8 or more bytes (assuming 1031) into a destination of size 1024
   68 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   70 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
CAT_VolLayerSmooth.c: In function ‘main’:
CAT_VolLayerSmooth.c:215:61: warning: ‘distCSF_’ directive output may be truncated writing 8 bytes into a region of size between 1 and 1024 [-Wformat-truncation=]
  215 |         snprintf(debug_filename, sizeof(debug_filename), "%sdistCSF_%s", dir_part, base);
      |                                                             ^~~~~~~~
In function ‘snprintf’,
    inlined from ‘main’ at CAT_VolLayerSmooth.c:215:9:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output 9 or more bytes (assuming 1032) into a destination of size 1024
   68 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   70 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResampleSphericalSPH.o CAT_SurfResampleSphericalSPH.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_SurfResampleSphericalSPH.c: In function ‘main’:
CAT_SurfResampleSphericalSPH.c:58:23: warning: unused variable ‘value’ [-Wunused-variable]
   58 |     double         r, value;
      |                       ^~~~~
CAT_SurfResampleSphericalSPH.c:58:20: warning: unused variable ‘r’ [-Wunused-variable]
   58 |     double         r, value;
      |                    ^
CAT_SurfResampleSphericalSPH.c:55:21: warning: unused variable ‘j’ [-Wunused-variable]
   55 |     int          i, j, bandwidth2, n_objects;
      |                     ^
CAT_SurfResampleSphericalSPH.c:55:18: warning: unused variable ‘i’ [-Wunused-variable]
   55 |     int          i, j, bandwidth2, n_objects;
      |                  ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2SPH.o CAT_Surf2SPH.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
CAT_Surf2SPH.c: In function ‘main’:
CAT_Surf2SPH.c:42:29: warning: unused variable ‘n_dims’ [-Wunused-variable]
   42 |     int          n_objects, n_dims = 3;
      |                             ^~~~~~
CAT_Surf2SPH.c:38:18: warning: unused variable ‘n_items’ [-Wunused-variable]
   38 |     int          n_items, bandwidth, bandwidth2;
      |                  ^~~~~~~
CAT_Surf2SPH.c:37:24: warning: unused variable ‘k’ [-Wunused-variable]
   37 |     int          i, j, k;
      |                        ^
CAT_Surf2SPH.c:37:21: warning: unused variable ‘j’ [-Wunused-variable]
   37 |     int          i, j, k;
      |                     ^
CAT_Surf2SPH.c:37:18: warning: unused variable ‘i’ [-Wunused-variable]
   37 |     int          i, j, k;
      |                  ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfDeform.o CAT_SurfDeform.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2PialWhite.o CAT_Surf2PialWhite.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfCorrectThicknessFolding.o CAT_SurfCorrectThicknessFolding.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfReduce.o CAT_SurfReduce.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSPH2Surf.o CAT_SurfSPH2Surf.c
CAT_SurfSPH2Surf.c: In function ‘main’:
CAT_SurfSPH2Surf.c:96:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   96 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:101:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  101 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:123:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |         fgets(line, 256, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:174:9: warning: ‘polygons_full’ may be used uninitialized [-Wmaybe-uninitialized]
  174 |         correct_bounds_to_target_with_scaling(polygons_bw, polygons_full);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:66:39: note: ‘polygons_full’ was declared here
   66 |     polygons_struct    *polygons_bw, *polygons_full;
      |                                       ^~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2ROIMulti.o CAT_Surf2ROIMulti.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfBBReg.o CAT_SurfBBReg.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSheet2Surf CAT_SurfSheet2Surf.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSheet2Surf CAT_SurfSheet2Surf.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2Sheet CAT_Surf2Sheet.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2Sheet CAT_Surf2Sheet.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Vol2Surf CAT_Vol2Surf.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Vol2Surf CAT_Vol2Surf.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfCurvature CAT_SurfCurvature.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfCurvature CAT_SurfCurvature.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfArea CAT_SurfArea.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfArea CAT_SurfArea.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfInfo CAT_SurfInfo.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfInfo CAT_SurfInfo.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfRatio CAT_SurfRatio.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfRatio CAT_SurfRatio.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmooth CAT_SurfSmooth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmooth CAT_SurfSmooth.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfPlotValuesAtMaximum CAT_SurfPlotValuesAtMaximum.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfPlotValuesAtMaximum CAT_SurfPlotValuesAtMaximum.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfPlotValuesAtPoint CAT_SurfPlotValuesAtPoint.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfPlotValuesAtPoint CAT_SurfPlotValuesAtPoint.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfMeasure2Txt CAT_SurfMeasure2Txt.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfMeasure2Txt CAT_SurfMeasure2Txt.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfConvert CAT_SurfConvert.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfConvert CAT_SurfConvert.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2Sphere CAT_Surf2Sphere.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2Sphere CAT_Surf2Sphere.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSeparateClusters CAT_SurfSeparateClusters.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSeparateClusters CAT_SurfSeparateClusters.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSeparatePolygons CAT_SurfSeparatePolygons.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSeparatePolygons CAT_SurfSeparatePolygons.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResampleSpherical CAT_SurfResampleSpherical.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResampleSpherical CAT_SurfResampleSpherical.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResample CAT_SurfResample.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResample CAT_SurfResample.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResampleMulti CAT_SurfResampleMulti.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResampleMulti CAT_SurfResampleMulti.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAreaDistortion CAT_SurfAreaDistortion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAreaDistortion CAT_SurfAreaDistortion.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAngularDistortion CAT_SurfAngularDistortion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAngularDistortion CAT_SurfAngularDistortion.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfMetricDistortion CAT_SurfMetricDistortion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfMetricDistortion CAT_SurfMetricDistortion.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAverage CAT_SurfAverage.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAverage CAT_SurfAverage.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfValuesAverage CAT_SurfValuesAverage.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfValuesAverage CAT_SurfValuesAverage.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfIsometize CAT_SurfIsometize.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfIsometize CAT_SurfIsometize.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfFixTopology CAT_SurfFixTopology.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfFixTopology CAT_SurfFixTopology.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSphericalDemon CAT_SurfSphericalDemon.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSphericalDemon CAT_SurfSphericalDemon.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothAreal CAT_SurfSmoothAreal.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothAreal CAT_SurfSmoothAreal.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothLaplacian CAT_SurfSmoothLaplacian.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothLaplacian CAT_SurfSmoothLaplacian.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothConvexity CAT_SurfSmoothConvexity.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothConvexity CAT_SurfSmoothConvexity.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothSharpness CAT_SurfSmoothSharpness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothSharpness CAT_SurfSmoothSharpness.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfHausdorff CAT_SurfHausdorff.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfHausdorff CAT_SurfHausdorff.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSharpness CAT_SurfSharpness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSharpness CAT_SurfSharpness.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSelfIntersect CAT_SurfSelfIntersect.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSelfIntersect CAT_SurfSelfIntersect.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfFixSelfIntersect CAT_SurfFixSelfIntersect.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfFixSelfIntersect CAT_SurfFixSelfIntersect.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfMarkDefects CAT_SurfMarkDefects.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfMarkDefects CAT_SurfMarkDefects.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfArtifacts CAT_SurfArtifacts.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfArtifacts CAT_SurfArtifacts.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfRefine CAT_SurfRefine.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfRefine CAT_SurfRefine.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfFractalDimension CAT_SurfFractalDimension.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfFractalDimension CAT_SurfFractalDimension.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfConvexity CAT_SurfConvexity.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfConvexity CAT_SurfConvexity.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAddValues CAT_SurfAddValues.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAddValues CAT_SurfAddValues.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSulcusDepth CAT_SurfSulcusDepth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSulcusDepth CAT_SurfSulcusDepth.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfDepthPotential CAT_SurfDepthPotential.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfDepthPotential CAT_SurfDepthPotential.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfCentral2Pial CAT_SurfCentral2Pial.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfCentral2Pial CAT_SurfCentral2Pial.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2ConvexHull CAT_Surf2ConvexHull.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2ConvexHull CAT_Surf2ConvexHull.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfDistance CAT_SurfDistance.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfDistance CAT_SurfDistance.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothDiffusion CAT_SurfSmoothDiffusion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothDiffusion CAT_SurfSmoothDiffusion.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_GlmEstimate CAT_GlmEstimate.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_GlmEstimate CAT_GlmEstimate.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolAverage CAT_VolAverage.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolAverage CAT_VolAverage.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolSmooth CAT_VolSmooth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolSmooth CAT_VolSmooth.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolSanlm CAT_VolSanlm.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolSanlm CAT_VolSanlm.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolOrnlm CAT_VolOrnlm.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolOrnlm CAT_VolOrnlm.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolAmap CAT_VolAmap.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolAmap CAT_VolAmap.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolLocalStat CAT_VolLocalStat.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolLocalStat CAT_VolLocalStat.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolSheetness CAT_VolSheetness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolSheetness CAT_VolSheetness.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolCalc CAT_VolCalc.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolCalc CAT_VolCalc.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolThicknessPbt CAT_VolThicknessPbt.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolThicknessPbt CAT_VolThicknessPbt.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolLayerSmooth CAT_VolLayerSmooth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolLayerSmooth CAT_VolLayerSmooth.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResampleSphericalSPH CAT_SurfResampleSphericalSPH.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResampleSphericalSPH CAT_SurfResampleSphericalSPH.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2SPH CAT_Surf2SPH.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2SPH CAT_Surf2SPH.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfDeform CAT_SurfDeform.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfDeform CAT_SurfDeform.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2PialWhite CAT_Surf2PialWhite.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2PialWhite CAT_Surf2PialWhite.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfReduce CAT_SurfReduce.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfReduce CAT_SurfReduce.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfCorrectThicknessFolding CAT_SurfCorrectThicknessFolding.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfCorrectThicknessFolding CAT_SurfCorrectThicknessFolding.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSPH2Surf CAT_SurfSPH2Surf.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSPH2Surf CAT_SurfSPH2Surf.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2ROIMulti CAT_Surf2ROIMulti.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2ROIMulti CAT_Surf2ROIMulti.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfBBReg CAT_SurfBBReg.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfBBReg CAT_SurfBBReg.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
Making all in tests
make[2]: Nothing to be done for 'all'.
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5KPXnE
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ '[' /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT
++ dirname /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/cat-surface-1.0.30-build
+ mkdir /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd CAT-Surface-1.0.30
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
Making install in .
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
 /usr/bin/mkdir -p '/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64'
 /bin/sh ./libtool   --mode=install /usr/bin/install -p   libCAT.la '/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64'
libtool: install: /usr/bin/install -p .libs/libCAT.lai /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64/libCAT.la
libtool: install: /usr/bin/install -p .libs/libCAT.a /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64/libCAT.a
libtool: install: chmod 644 /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64/libCAT.a
libtool: install: ranlib /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64/libCAT.a
libtool: warning: remember to run 'libtool --finish /usr/lib64'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Making install in Progs
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
 /usr/bin/mkdir -p '/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -p CAT_Surf2Sheet CAT_SurfSheet2Surf CAT_Vol2Surf CAT_SurfCurvature CAT_SurfArea CAT_SurfInfo CAT_SurfRatio CAT_SurfSmooth CAT_SurfPlotValuesAtPoint CAT_SurfPlotValuesAtMaximum CAT_SurfMeasure2Txt CAT_SurfConvert CAT_Surf2Sphere CAT_SurfSeparateClusters CAT_SurfSeparatePolygons CAT_SurfResampleSpherical CAT_SurfResample CAT_SurfResampleMulti CAT_SurfAreaDistortion CAT_SurfAngularDistortion CAT_SurfMetricDistortion CAT_SurfAverage CAT_SurfValuesAverage CAT_SurfFixTopology CAT_SurfIsometize CAT_SurfSphericalDemon CAT_SurfSmoothAreal CAT_SurfSmoothLaplacian CAT_SurfSmoothConvexity CAT_SurfSmoothSharpness CAT_SurfHausdorff CAT_SurfSharpness CAT_SurfSelfIntersect CAT_SurfFixSelfIntersect CAT_SurfMarkDefects CAT_SurfArtifacts CAT_SurfFractalDimension CAT_SurfRefine CAT_SurfConvexity CAT_SurfAddValues CAT_SurfSulcusDepth CAT_SurfDepthPotential CAT_SurfCentral2Pial CAT_Surf2ConvexHull CAT_SurfDistance CAT_GlmEstimate CAT_SurfSmoothDiffusion CAT_VolAmap CAT_VolAverage CAT_VolSmooth CAT_VolSanlm CAT_VolOrnlm CAT_VolLocalStat CAT_VolThicknessPbt CAT_VolSheetness CAT_VolCalc CAT_VolLayerSmooth CAT_SurfResampleSphericalSPH CAT_Surf2SPH CAT_SurfDeform CAT_Surf2PialWhite CAT_SurfCorrectThicknessFolding CAT_SurfReduce CAT_Surf2ROIMulti CAT_SurfSPH2Surf CAT_SurfBBReg '/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin'
libtool: install: /usr/bin/install -p CAT_Surf2Sheet /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Surf2Sheet
libtool: install: /usr/bin/install -p CAT_SurfSheet2Surf /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSheet2Surf
libtool: install: /usr/bin/install -p CAT_Vol2Surf /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Vol2Surf
libtool: install: /usr/bin/install -p CAT_SurfCurvature /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfCurvature
libtool: install: /usr/bin/install -p CAT_SurfArea /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfArea
libtool: install: /usr/bin/install -p CAT_SurfInfo /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfInfo
libtool: install: /usr/bin/install -p CAT_SurfRatio /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfRatio
libtool: install: /usr/bin/install -p CAT_SurfSmooth /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSmooth
libtool: install: /usr/bin/install -p CAT_SurfPlotValuesAtPoint /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfPlotValuesAtPoint
libtool: install: /usr/bin/install -p CAT_SurfPlotValuesAtMaximum /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfPlotValuesAtMaximum
libtool: install: /usr/bin/install -p CAT_SurfMeasure2Txt /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfMeasure2Txt
libtool: install: /usr/bin/install -p CAT_SurfConvert /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfConvert
libtool: install: /usr/bin/install -p CAT_Surf2Sphere /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Surf2Sphere
libtool: install: /usr/bin/install -p CAT_SurfSeparateClusters /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSeparateClusters
libtool: install: /usr/bin/install -p CAT_SurfSeparatePolygons /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSeparatePolygons
libtool: install: /usr/bin/install -p CAT_SurfResampleSpherical /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfResampleSpherical
libtool: install: /usr/bin/install -p CAT_SurfResample /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfResample
libtool: install: /usr/bin/install -p CAT_SurfResampleMulti /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfResampleMulti
libtool: install: /usr/bin/install -p CAT_SurfAreaDistortion /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfAreaDistortion
libtool: install: /usr/bin/install -p CAT_SurfAngularDistortion /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfAngularDistortion
libtool: install: /usr/bin/install -p CAT_SurfMetricDistortion /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfMetricDistortion
libtool: install: /usr/bin/install -p CAT_SurfAverage /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfAverage
libtool: install: /usr/bin/install -p CAT_SurfValuesAverage /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfValuesAverage
libtool: install: /usr/bin/install -p CAT_SurfFixTopology /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfFixTopology
libtool: install: /usr/bin/install -p CAT_SurfIsometize /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfIsometize
libtool: install: /usr/bin/install -p CAT_SurfSphericalDemon /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSphericalDemon
libtool: install: /usr/bin/install -p CAT_SurfSmoothAreal /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSmoothAreal
libtool: install: /usr/bin/install -p CAT_SurfSmoothLaplacian /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSmoothLaplacian
libtool: install: /usr/bin/install -p CAT_SurfSmoothConvexity /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSmoothConvexity
libtool: install: /usr/bin/install -p CAT_SurfSmoothSharpness /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSmoothSharpness
libtool: install: /usr/bin/install -p CAT_SurfHausdorff /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfHausdorff
libtool: install: /usr/bin/install -p CAT_SurfSharpness /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSharpness
libtool: install: /usr/bin/install -p CAT_SurfSelfIntersect /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSelfIntersect
libtool: install: /usr/bin/install -p CAT_SurfFixSelfIntersect /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfFixSelfIntersect
libtool: install: /usr/bin/install -p CAT_SurfMarkDefects /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfMarkDefects
libtool: install: /usr/bin/install -p CAT_SurfArtifacts /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfArtifacts
libtool: install: /usr/bin/install -p CAT_SurfFractalDimension /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfFractalDimension
libtool: install: /usr/bin/install -p CAT_SurfRefine /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfRefine
libtool: install: /usr/bin/install -p CAT_SurfConvexity /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfConvexity
libtool: install: /usr/bin/install -p CAT_SurfAddValues /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfAddValues
libtool: install: /usr/bin/install -p CAT_SurfSulcusDepth /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSulcusDepth
libtool: install: /usr/bin/install -p CAT_SurfDepthPotential /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfDepthPotential
libtool: install: /usr/bin/install -p CAT_SurfCentral2Pial /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfCentral2Pial
libtool: install: /usr/bin/install -p CAT_Surf2ConvexHull /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Surf2ConvexHull
libtool: install: /usr/bin/install -p CAT_SurfDistance /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfDistance
libtool: install: /usr/bin/install -p CAT_GlmEstimate /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_GlmEstimate
libtool: install: /usr/bin/install -p CAT_SurfSmoothDiffusion /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSmoothDiffusion
libtool: install: /usr/bin/install -p CAT_VolAmap /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolAmap
libtool: install: /usr/bin/install -p CAT_VolAverage /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolAverage
libtool: install: /usr/bin/install -p CAT_VolSmooth /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolSmooth
libtool: install: /usr/bin/install -p CAT_VolSanlm /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolSanlm
libtool: install: /usr/bin/install -p CAT_VolOrnlm /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolOrnlm
libtool: install: /usr/bin/install -p CAT_VolLocalStat /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolLocalStat
libtool: install: /usr/bin/install -p CAT_VolThicknessPbt /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolThicknessPbt
libtool: install: /usr/bin/install -p CAT_VolSheetness /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolSheetness
libtool: install: /usr/bin/install -p CAT_VolCalc /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolCalc
libtool: install: /usr/bin/install -p CAT_VolLayerSmooth /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_VolLayerSmooth
libtool: install: /usr/bin/install -p CAT_SurfResampleSphericalSPH /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfResampleSphericalSPH
libtool: install: /usr/bin/install -p CAT_Surf2SPH /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Surf2SPH
libtool: install: /usr/bin/install -p CAT_SurfDeform /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfDeform
libtool: install: /usr/bin/install -p CAT_Surf2PialWhite /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Surf2PialWhite
libtool: install: /usr/bin/install -p CAT_SurfCorrectThicknessFolding /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfCorrectThicknessFolding
libtool: install: /usr/bin/install -p CAT_SurfReduce /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfReduce
libtool: install: /usr/bin/install -p CAT_Surf2ROIMulti /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_Surf2ROIMulti
libtool: install: /usr/bin/install -p CAT_SurfSPH2Surf /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfSPH2Surf
libtool: install: /usr/bin/install -p CAT_SurfBBReg /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/bin/CAT_SurfBBReg
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
Making install in tests
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
+ rm -f /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64/libCAT.a /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/lib64/libCAT.la
+ rm -rf '/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/include/CAT*'
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.30-1.fc45 --unique-debug-suffix -1.0.30-1.fc45.x86_64 --unique-debug-src-base cat-surface-1.0.30-1.fc45.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30
find-debuginfo: starting
Extracting debug info from 66 files
DWARF-compressing 66 files
sepdebugcrcfix: Updated 66 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/cat-surface-1.0.30-1.fc45.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/cat-surface-1.0.30-1.fc45.x86_64/3rdparty/bicpl-surface/Geometry/tetrahedrons.c is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/cat-surface-1.0.30-1.fc45.x86_64/3rdparty/bicpl-surface/Geometry/platonics.c is executable but has no shebang, removing executable bit
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j2 /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT
Scanned 33 directories and 443 files,
    processed 0 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr
Scanned 32 directories and 443 files,
    considered 443 files, read 6 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/cat-surface-1.0.30-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.zSiKgt
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd CAT-Surface-1.0.30
+ make check
Making check in .
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30'
Making check in Progs
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/Progs'
Making check in tests
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make  test_math test_glmformula test_sheetness test_calc test_surfinfo test_pialprofile test_deform test_folding test_intersect test_annot test_morph
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_math.o test_math.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_math test_math.o -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_math test_math.o  -lm -lgiftiio -lniftiio -lznz
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_glmformula.o test_glmformula.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_glmformula test_glmformula.o -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_glmformula test_glmformula.o  -lm -lgiftiio -lniftiio -lznz
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_sheetness.o test_sheetness.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_sheetness test_sheetness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_sheetness test_sheetness.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_calc.o test_calc.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_calc test_calc.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_calc test_calc.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_surfinfo.o test_surfinfo.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_surfinfo test_surfinfo.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_surfinfo test_surfinfo.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_pialprofile.o test_pialprofile.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_pialprofile test_pialprofile.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_pialprofile test_pialprofile.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_deform.o test_deform.c
test_deform.c: In function ‘test_deform_orientation_invariant’:
test_deform.c:40:14: warning: unused variable ‘i’ [-Wunused-variable]
   40 |     int sgn, i, n_points = 0;
      |              ^
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_deform test_deform.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_deform test_deform.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_folding.o test_folding.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_folding test_folding.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_folding test_folding.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_intersect.o test_intersect.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_intersect test_intersect.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_intersect test_intersect.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_annot.o test_annot.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_annot test_annot.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_annot test_annot.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_morph.o test_morph.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_morph test_morph.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_morph test_morph.o  ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make  check-TESTS
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make[3]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
PASS: test_math
PASS: test_glmformula
PASS: test_sheetness
PASS: test_calc
PASS: test_surfinfo
PASS: test_pialprofile
PASS: test_deform
PASS: test_folding
PASS: test_intersect
PASS: test_annot
PASS: test_morph
============================================================================
Testsuite summary for Cortex Analysis Tools 1.0
============================================================================
# TOTAL: 11
# PASS:  11
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[3]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/tests'
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: cat-surface-1.0.30-1.fc45.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Xhkuwm
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ cd CAT-Surface-1.0.30
+ DOCDIR=/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/doc/cat-surface
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/doc/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/README.md /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/doc/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/AUTHORS /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/doc/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/ChangeLog /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/doc/cat-surface
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.DO4vHs
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.30-build
+ cd CAT-Surface-1.0.30
+ LICENSEDIR=/builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/licenses/cat-surface
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/licenses/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/LICENSE /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/licenses/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.30-build/CAT-Surface-1.0.30/COPYING /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT/usr/share/licenses/cat-surface
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(bicpl) = 1.4.6 bundled(nii2mesh) bundled(s2kit) = 1.0 bundled(volume_io) = 1.5.1 cat-surface = 1.0.30-1.fc45 cat-surface(x86-64) = 1.0.30-1.fc45
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libgiftiio.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libniftiio.so.2()(64bit) rtld(GNU_HASH)
Processing files: cat-surface-debugsource-1.0.30-1.fc45.x86_64
Provides: cat-surface-debugsource = 1.0.30-1.fc45 cat-surface-debugsource(x86-64) = 1.0.30-1.fc45
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: cat-surface-debuginfo-1.0.30-1.fc45.x86_64
Provides: cat-surface-debuginfo = 1.0.30-1.fc45 cat-surface-debuginfo(x86-64) = 1.0.30-1.fc45 debuginfo(build-id) = 0304a073fd13761c50c8abf906ac62040992f6bb debuginfo(build-id) = 0cdf9d90efd19cc824ce319315be3f50c7808a71 debuginfo(build-id) = 10b65105ba280e69d13d7c04af7839352d1297e3 debuginfo(build-id) = 125fb2eddbf15229e5272de6189558329f8b12a0 debuginfo(build-id) = 15f35727dbfc6299d3ad5101059a122e99284197 debuginfo(build-id) = 1712e07e7fc3a208d1a62c4d73e7f9a76ffff385 debuginfo(build-id) = 1f3d06e3c175aee43b6e6a61b7c53ff8db064348 debuginfo(build-id) = 24a28c08de484410e70b4ec2b73d701a3f66fcc4 debuginfo(build-id) = 25bc8fc5add72b6fdab2ea43a45e7fe1064b7199 debuginfo(build-id) = 2e3550bdd0b58d1d49d8ad894296e19b4a3e2288 debuginfo(build-id) = 34b7199a07c55d01cbe79546f795451950b3f0b2 debuginfo(build-id) = 39db6da5935695bd4ff252f97366894e612ea4c8 debuginfo(build-id) = 3c3c9ec478fa85c4daf28b8b310ccb76e4076f1d debuginfo(build-id) = 3f3bc30e09ec0ef4817dfc2af5631992e3be4341 debuginfo(build-id) = 449bc74f74b3765ed21f0ba1b564799994e4c3cc debuginfo(build-id) = 4548d4706011e8368e410581da65315cb3a986e6 debuginfo(build-id) = 4947ac7fba1f004fb475217532bfeff0dca47f1c debuginfo(build-id) = 4a446267b4dd2e3289b37be3f05412cd23052f16 debuginfo(build-id) = 4a4466c7506e8059fa14fe11c5e0fbbb9dcfc55e debuginfo(build-id) = 4e5300e4877fc596ef6372a9b000716e31146cb3 debuginfo(build-id) = 539957bf0974758f95d60f28ca3fec5ac4dd1b57 debuginfo(build-id) = 58383bc017a81503cdbb9dcef0e51f01caf7564d debuginfo(build-id) = 5a65c73574353120c2ba6d36b5fc4a94dd55022b debuginfo(build-id) = 5ed17f398a794e342a45d3a8e7a5dbb5024073d6 debuginfo(build-id) = 5f090a233d52e5fa710760df59717092c56bbbae debuginfo(build-id) = 5f6205b23f699d2f9b57e5c395362496f626037b debuginfo(build-id) = 5fa4346c04cf1b8960b7dfa214a3233d7097a96b debuginfo(build-id) = 609ef32ac535b0bdbfc8ca5284be136cf921cfe8 debuginfo(build-id) = 661e9eaf3cc4820575a2e782330714e736586180 debuginfo(build-id) = 68181b501f2a3ce3141727476208738688a85c02 debuginfo(build-id) = 6a1b556018c4e621100576076af62ab9310835b7 debuginfo(build-id) = 6d4b4bc4dc69a19320df803ea13f08f9d32c0970 debuginfo(build-id) = 73ccd2f79f849b52ec39f3237fd725bb721e2890 debuginfo(build-id) = 7c9f4bc4e30c0e659dcc0df9587bca8e226d53c9 debuginfo(build-id) = 7db33d0578b18bf13d0c814a90c167e41542f4e8 debuginfo(build-id) = 81c8839a778ea164c8f34406b818b24be913895d debuginfo(build-id) = 82a2e082088eeba67fd15578bbfa3bd9d0b0b5d7 debuginfo(build-id) = 88bea8b754b4e4e0bb90c008e175e0b284d7ad1d debuginfo(build-id) = 93ab3bd29e3ac28ac2c5090f0dc632eecbd49fcc debuginfo(build-id) = 97fda45d589ede1a08d10156824db08cb17c0129 debuginfo(build-id) = 986bfb8818c1e85fccc267dece63ea9e7e209718 debuginfo(build-id) = a0ef737417c012f2c6b4162293df54a3e095de06 debuginfo(build-id) = b5cb7a9585b3f3100bdf4cbf3739dc4c9f7cda09 debuginfo(build-id) = b6d9e8cdb4309f06f65bf7b92089a8e770cc382c debuginfo(build-id) = b765ba5c1c891fece90c2562a685fd638990dcea debuginfo(build-id) = b81c02afb729e1b33b941912e01e1a0d561fb647 debuginfo(build-id) = bac3b406d82444cbad567bd0f767e7a1cf371d9e debuginfo(build-id) = bd6fa691e48d49d7f3e6182032ac8d7c4e9a1f37 debuginfo(build-id) = be5da673b59a3d4f544e8f6e385d0721629b4987 debuginfo(build-id) = c2fe9a511beccd5b2352aec389a484e04b475fe9 debuginfo(build-id) = c4cd92cb91e9e345ac14cb2cd9f70ae812012bfc debuginfo(build-id) = c5f30e6e776099a16a8d7e2fcc3942fbe1d2ef6b debuginfo(build-id) = cdbc1df976e2834f07096d01fb6e1e726b57c257 debuginfo(build-id) = ce393608d19b69399fcf87ce35e7593955206e2d debuginfo(build-id) = d36085dee4749cc3554d2dc6961659494f287c56 debuginfo(build-id) = d849a5f6f13b0c30c65ae04337fad5096a0f51be debuginfo(build-id) = db1879a1de2fe787643aaee8e4c2916fa9203698 debuginfo(build-id) = e2b219e9301d0003829be60fb236246cfbf1d253 debuginfo(build-id) = e326974299c20090b1cd2568982255adf0e2a64a debuginfo(build-id) = ed4679314f7279abac5351c79c46fd9251bff7ec debuginfo(build-id) = ef4ef2641f9858fc88b899479eb220b8ebcce10b debuginfo(build-id) = efe919423efa9b4461efc7bac147bd443d9e00e4 debuginfo(build-id) = f002a50192160ed752edf1638843a4ea75b89c1f debuginfo(build-id) = f4b5a8e825a9369b4bf0441a86626f5eb2e2db63 debuginfo(build-id) = fac37db28e0f3637985a5e9e3b966189fcfcc778 debuginfo(build-id) = fe11564381309abbf8851165d9e45aebc234052a
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: cat-surface-debugsource(x86-64) = 1.0.30-1.fc45
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/cat-surface-1.0.30-build/BUILDROOT
Wrote: /builddir/build/RPMS/cat-surface-1.0.30-1.fc45.x86_64.rpm
Wrote: /builddir/build/RPMS/cat-surface-debugsource-1.0.30-1.fc45.x86_64.rpm
Wrote: /builddir/build/RPMS/cat-surface-debuginfo-1.0.30-1.fc45.x86_64.rpm
Finish: rpmbuild cat-surface-1.0.30-1.fc45.src.rpm
Finish: build phase for cat-surface-1.0.30-1.fc45.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-45-x86_64-1791418617.110913/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/cat-surface-1.0.30-1.fc45.src.rpm) Config(child) 2 minutes 55 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "cat-surface",
            "epoch": null,
            "version": "1.0.30",
            "release": "1.fc45",
            "arch": "x86_64"
        },
        {
            "name": "cat-surface-debuginfo",
            "epoch": null,
            "version": "1.0.30",
            "release": "1.fc45",
            "arch": "x86_64"
        },
        {
            "name": "cat-surface-debugsource",
            "epoch": null,
            "version": "1.0.30",
            "release": "1.fc45",
            "arch": "x86_64"
        },
        {
            "name": "cat-surface",
            "epoch": null,
            "version": "1.0.30",
            "release": "1.fc45",
            "arch": "src"
        }
    ]
}
RPMResults finished