%global pypi_name cubids

Name:           python-%{pypi_name}
Version:        1.3.0
Release:        2%{?dist}
Summary:        Curation of BIDS datasets

License:        MIT
URL:            https://github.com/PennLINC/cubids
Source0:        %{pypi_source %{pypi_name}}

BuildArch:      noarch

BuildRequires:  python3-devel

%global _description %{expand:
CuBIDS (Curation of BIDS) summarizes a BIDS dataset's acquisition parameters
into key groups and parameter groups, finds heterogeneity and lets you
rename, merge or purge variants, with DataLad support for tracking the
changes. BIDS (the Brain Imaging Data Structure) is the standard layout for
neuroimaging datasets used by OpenNeuro, fMRIPrep and most current
pipelines.}

%description %{_description}

%package -n     python3-%{pypi_name}
Summary:        %{summary}

%description -n python3-%{pypi_name} %{_description}


%prep
%autosetup -p1 -n cubids-%{version}
# Fedora rejects ambiguous #!/usr/bin/env python shebangs in installed modules.
grep -rlI '^#!/usr/bin/env python$' . | xargs -r sed -i '1s|^#!/usr/bin/env python$|#!%{python3}|'
# Old versioneer.py uses configparser.SafeConfigParser and readfp, both removed in Python 3.12.
if [ -f versioneer.py ] && grep -q SafeConfigParser versioneer.py; then
  sed -i 's/SafeConfigParser/ConfigParser/g; s/\.readfp(/.read_file(/g' versioneer.py
  if grep -qE 'SafeConfigParser|readfp\(' versioneer.py; then exit 1; fi
fi
# numpy<=2.4.6 and pandas<=3.0.6 are upper caps at the versions upstream last tested;
# rawhide has numpy 2.5. %%check reads sidecar metadata through CuBIDS with whatever is installed.
sed -i -E 's/^    "numpy<=2.4.6",$/    "numpy",/; s/^    "pandas<=3.0.6",$/    "pandas",/' pyproject.toml
if grep -qE '"(numpy|pandas)<=' pyproject.toml; then exit 1; fi


%generate_buildrequires
export SETUPTOOLS_SCM_PRETEND_VERSION=%{version}
%pyproject_buildrequires


%build
export SETUPTOOLS_SCM_PRETEND_VERSION=%{version}
%pyproject_wheel


%install
%pyproject_install
# Build helpers some DataLad-template projects install at top level; not part of the package.
rm -rf %{buildroot}%{python3_sitelib}/_datalad_buildsupport %{buildroot}%{python3_sitelib}/tools %{buildroot}%{python3_sitelib}/benchmarks %{buildroot}%{python3_sitelib}/tests %{buildroot}%{python3_sitelib}/tests.py
# Old setup.py data_files can drop these at the top of site-packages (osfclient does).
rm -f %{buildroot}%{python3_sitelib}/{LICENSE,VERSION,requirements.txt}
%pyproject_save_files -L cubids


%check
%pyproject_check_import -e 'cubids.tests*' -e 'cubids.*.tests*' -e '*.test_*' -e '*.conftest' -e '*.pytest_plugin'
%{py3_test_envvars} %{python3} - <<'EOF'
import json, tempfile, pathlib
root = pathlib.Path(tempfile.mkdtemp(), 'bids')
for sub in ('01', '02'):
    d = root / f'sub-{sub}' / 'anat'; d.mkdir(parents=True)
    (d / f'sub-{sub}_T1w.nii.gz').write_bytes(b'')
    (d / f'sub-{sub}_T1w.json').write_text(json.dumps({'RepetitionTime': 2.3, 'EchoTime': 0.003, 'FlipAngle': 9}))
(root / 'dataset_description.json').write_text(json.dumps({'Name': 't', 'BIDSVersion': '1.9.0'}))
from cubids.cubids import CuBIDS
c = CuBIDS(str(root))
fields = c.get_all_metadata_fields()
print('cubids metadata fields:', fields)
assert {'RepetitionTime', 'EchoTime', 'FlipAngle'} <= set(fields), fields
EOF
%{py3_test_envvars} %{buildroot}%{_bindir}/cubids --help > /dev/null


%files -n python3-%{pypi_name} -f %{pyproject_files}
%license LICENSE
%{_bindir}/cubids


%changelog
* Mon Oct 12 2026 Morgan Hough <morgan.hough@gmail.com> - 1.3.0-2
- Relax the numpy and pandas upper caps (rawhide has numpy 2.5); %%check reads metadata through CuBIDS.

* Mon Oct 12 2026 Morgan Hough <morgan.hough@gmail.com> - 1.3.0-1
- Initial package, for the DataLad extension stack and dandi.