Warning: Permanently added '54.80.67.179' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11086875-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 1.10 PID: 21944 Logging PID: 21946 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11086875, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ceec3d055750ad6df3c4ca2d7314e3f1cec175a7', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-8', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '11086875-fedora-rawhide-aarch64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3'... Running: git checkout ceec3d055750ad6df3c4ca2d7314e3f1cec175a7 -- cmd: ['git', 'checkout', 'ceec3d055750ad6df3c4ca2d7314e3f1cec175a7', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3 rc: 0 stdout: stderr: Note: switching to 'ceec3d055750ad6df3c4ca2d7314e3f1cec175a7'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ceec3d0 automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading eigen-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o eigen-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/eigen-3.4.0.tar.gz/md5/4c527a9171d71a72a9d4186e65bea559/eigen-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2.57M 100 2.57M 0 0 164.7M 0 0 INFO: Reading stdout from command: md5sum eigen-3.4.0.tar.gz INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 3.86M 100 3.86M 0 0 236.6M 0 0 INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791323007.267307 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791323007.267307 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3/mrtrix3.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791323007.267307/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-13470a3d-af8e-43e4-9e84-2365c0d9faf3 INFO: Checking that 9cfabe98deb9b268c3f39e23db24b5a25faadd08a99e48f0a4c4168af933adc7 image matches host's architecture INFO: Copy content of container 9cfabe98deb9b268c3f39e23db24b5a25faadd08a99e48f0a4c4168af933adc7 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791323007.267307/root INFO: mounting 9cfabe98deb9b268c3f39e23db24b5a25faadd08a99e48f0a4c4168af933adc7 with podman image mount INFO: image 9cfabe98deb9b268c3f39e23db24b5a25faadd08a99e48f0a4c4168af933adc7 as /var/lib/containers/storage/overlay/59a2e03a9605177b75c30327a7e725cf93498a53430069b4ca832d31a30d1fae/merged INFO: umounting image 9cfabe98deb9b268c3f39e23db24b5a25faadd08a99e48f0a4c4168af933adc7 (/var/lib/containers/storage/overlay/59a2e03a9605177b75c30327a7e725cf93498a53430069b4ca832d31a30d1fae/merged) with podman image umount INFO: Removing image mock-bootstrap-13470a3d-af8e-43e4-9e84-2365c0d9faf3 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791323007.267307/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 dnf5-5.4.6.0-1.fc46.aarch64 dnf5-plugins-5.4.6.0-1.fc46.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 2.2 MiB/s | 624.4 KiB | 00m00s fedora 100% | 24.1 MiB/s | 21.1 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 0:5.3.20-1.fc46 fedora 8.4 MiB bzip2 aarch64 0:1.0.8-24.fc45 fedora 171.2 KiB coreutils aarch64 0:9.12-1.fc46 fedora 8.6 MiB cpio aarch64 0:2.15-10.fc45 fedora 1.1 MiB diffutils aarch64 0:3.12-6.fc45 fedora 1.6 MiB fedora-release-common noarch 0:46-0.1 fedora 4.6 KiB findutils aarch64 1:4.11.0-2.fc45 fedora 2.0 MiB gawk aarch64 0:5.4.1-1.fc45 fedora 2.9 MiB glibc-minimal-langpack aarch64 0:2.44.9000-4.fc46 fedora 0.0 B grep aarch64 0:3.12-4.fc45 fedora 1.0 MiB gzip aarch64 0:1.14-4.fc45 fedora 437.6 KiB info aarch64 0:7.3-3.fc45 fedora 424.4 KiB patch aarch64 0:2.8-6.fc46 fedora 262.4 KiB redhat-rpm-config noarch 0:345-4.fc46 fedora 184.2 KiB rpm-build aarch64 0:6.1.0-1.fc46 fedora 616.1 KiB sed aarch64 0:4.10-2.fc45 fedora 878.4 KiB shadow-utils aarch64 2:4.20.0-1.fc45 fedora 4.4 MiB tar aarch64 2:1.35-9.fc45 fedora 3.0 MiB unzip aarch64 0:6.0-71.fc45 fedora 469.9 KiB util-linux aarch64 0:2.42.4-2.fc46 fedora 6.9 MiB which aarch64 0:2.25-2.fc45 fedora 123.6 KiB xz aarch64 1:5.8.4-1.fc46 fedora 1.5 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-3.fc45 fedora 3.5 KiB add-determinism aarch64 0:0.7.3-3.fc45 fedora 1.9 MiB alternatives aarch64 0:1.33-6.fc45 fedora 90.1 KiB ansible-srpm-macros noarch 0:1-22.fc45 fedora 35.7 KiB audit-libs aarch64 0:4.2.1-2.fc45 fedora 486.7 KiB binutils aarch64 0:2.47.50-12.fc46 fedora 27.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45 fedora 1.2 KiB bzip2-libs aarch64 0:1.0.8-24.fc45 fedora 72.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc46 fedora 2.6 MiB cmake-srpm-macros noarch 0:4.3.0-5.fc45 fedora 524.0 B coreutils-common aarch64 0:9.12-1.fc46 fedora 11.5 MiB crypto-policies noarch 0:20260713-2.gitc42da77.fc45 fedora 134.3 KiB curl aarch64 0:8.23.0~rc2-1.fc46 fedora 525.6 KiB cyrus-sasl-lib aarch64 0:2.1.28-37.fc45 fedora 2.4 MiB debugedit aarch64 0:5.3-3.fc45 fedora 320.9 KiB dwz aarch64 0:0.17-3.fc45 fedora 322.7 KiB ed aarch64 0:1.22.6-1.fc46 fedora 158.9 KiB efi-srpm-macros noarch 0:6-9.fc45 fedora 40.3 KiB elfutils aarch64 0:0.196-1.fc46 fedora 3.8 MiB elfutils-debuginfod-client aarch64 0:0.196-1.fc46 fedora 144.0 KiB elfutils-libelf aarch64 0:0.196-1.fc46 fedora 1.5 MiB elfutils-libs aarch64 0:0.196-1.fc46 fedora 746.6 KiB erlang-srpm-macros noarch 0:0.4.0-1.fc46 fedora 2.0 KiB fedora-gpg-keys noarch 0:46-0.3 fedora 130.3 KiB fedora-release noarch 0:46-0.1 fedora 0.0 B fedora-release-identity-basic noarch 0:46-0.1 fedora 664.0 B fedora-repos noarch 0:46-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 0:46-0.3 fedora 2.2 KiB file aarch64 0:5.48-3.fc46 fedora 141.9 KiB file-libs aarch64 0:5.48-3.fc46 fedora 12.4 MiB filesystem aarch64 0:3.18-59.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-59.fc45 fedora 38.2 KiB fips-provider aarch64 0:1.5.3-1.fc46 fedora 3.8 MiB fonts-srpm-macros noarch 1:5.0.0-4.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-5.fc45 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-17.fc45 fedora 144.0 B gap-srpm-macros noarch 0:2-3.fc45 fedora 2.1 KiB gdb-minimal aarch64 0:17.2-6.fc46 fedora 13.5 MiB gdbm-libs aarch64 1:1.23-12.fc45 fedora 233.8 KiB ghc-srpm-macros noarch 0:1.10-2.fc45 fedora 792.0 B glibc aarch64 0:2.44.9000-4.fc46 fedora 6.6 MiB glibc-common aarch64 0:2.44.9000-4.fc46 fedora 1.3 MiB glibc-gconv-extra aarch64 0:2.44.9000-4.fc46 fedora 18.6 MiB gmp aarch64 1:6.3.0-6.fc45 fedora 657.9 KiB gnat-srpm-macros noarch 0:7-3.fc45 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-2.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-4.fc45 fedora 655.0 KiB gnupg2 aarch64 0:2.4.9-18.fc45 fedora 6.4 MiB gnupg2-dirmngr aarch64 0:2.4.9-18.fc45 fedora 646.1 KiB gnupg2-gpg-agent aarch64 0:2.4.9-18.fc45 fedora 846.9 KiB gnupg2-gpgconf aarch64 0:2.4.9-18.fc45 fedora 321.8 KiB gnupg2-keyboxd aarch64 0:2.4.9-18.fc45 fedora 233.2 KiB gnupg2-verify aarch64 0:2.4.9-18.fc45 fedora 364.3 KiB gnutls aarch64 0:3.8.13-5.fc46 fedora 3.7 MiB go-srpm-macros noarch 0:3.8.0-3.fc45 fedora 61.9 KiB gpgverify noarch 0:2.2-5.fc45 fedora 8.7 KiB ima-evm-utils-libs aarch64 0:1.6.2-12.fc45 fedora 92.6 KiB jansson aarch64 0:2.14-5.fc45 fedora 93.0 KiB java-srpm-macros noarch 0:1-9.fc45 fedora 870.0 B json-c aarch64 0:0.18-9.fc45 fedora 138.5 KiB kernel-srpm-macros noarch 0:1.0-30.fc45 fedora 1.9 KiB keyutils-libs aarch64 0:1.6.3-8.fc45 fedora 98.2 KiB krb5-libs aarch64 0:1.22.2-9.fc45 fedora 2.5 MiB libacl aarch64 0:2.4.0-2.fc45 fedora 67.9 KiB libarchive aarch64 0:3.8.9-2.fc46 fedora 975.7 KiB libassuan aarch64 0:2.5.7-6.fc45 fedora 215.9 KiB libattr aarch64 0:2.6.0-2.fc45 fedora 68.4 KiB libblkid aarch64 0:2.42.4-2.fc46 fedora 290.3 KiB libbrotli aarch64 0:1.2.0-6.fc45 fedora 909.2 KiB libcap aarch64 0:2.78-2.fc45 fedora 508.4 KiB libcap-ng aarch64 0:0.9.6-1.fc46 fedora 160.9 KiB libcbor aarch64 0:0.14.0-3.fc45 fedora 139.6 KiB libcom_err aarch64 0:1.47.4-2.fc45 fedora 111.1 KiB libcurl aarch64 0:8.23.0~rc2-1.fc46 fedora 1.0 MiB libeconf aarch64 0:0.7.9-4.fc45 fedora 80.8 KiB libevent aarch64 0:2.1.13-1.fc46 fedora 1.1 MiB libfdisk aarch64 0:2.42.4-2.fc46 fedora 418.8 KiB libffi aarch64 0:3.8.0-1.fc46 fedora 159.6 KiB libfido2 aarch64 0:1.17.0-6.fc46 fedora 280.7 KiB libfsverity aarch64 0:1.7-4.fc45 fedora 68.4 KiB libgcc aarch64 0:16.2.1-2.fc46.1 fedora 222.3 KiB libgcrypt aarch64 0:1.12.4-1.fc46 fedora 1.2 MiB libgomp aarch64 0:16.2.1-2.fc46.1 fedora 592.9 KiB libgpg-error aarch64 0:1.61-2.fc45 fedora 997.9 KiB libidn2 aarch64 0:2.3.8-4.fc45 fedora 560.5 KiB libksba aarch64 0:1.8.1-1.fc46 fedora 407.8 KiB liblastlog2 aarch64 0:2.42.4-2.fc46 fedora 137.8 KiB libmount aarch64 0:2.42.4-2.fc46 fedora 420.4 KiB libnghttp2 aarch64 0:1.69.0-6.fc46 fedora 197.9 KiB libnghttp3 aarch64 0:1.18.0-1.fc45 fedora 206.8 KiB libpfm aarch64 0:4.13.0-23.fc45 fedora 252.0 KiB libpkgconf aarch64 0:2.5.1-2.fc45 fedora 134.0 KiB libpsl aarch64 0:0.23.3-1.fc46 fedora 132.5 KiB libselinux aarch64 0:3.11-5.fc46 fedora 265.2 KiB libselinux-utils aarch64 0:3.11-5.fc46 fedora 1.3 MiB libsemanage aarch64 0:3.11-4.fc46 fedora 360.3 KiB libsepol aarch64 0:3.11-2.fc45 fedora 809.9 KiB libsmartcols aarch64 0:2.42.4-2.fc46 fedora 224.4 KiB libssh aarch64 0:0.12.2-1.fc45 fedora 721.4 KiB libssh-config noarch 0:0.12.2-1.fc45 fedora 277.0 B libstdc++ aarch64 0:16.2.1-2.fc46.1 fedora 3.0 MiB libtasn1 aarch64 0:4.21.0-2.fc45 fedora 220.7 KiB libtool-ltdl aarch64 0:2.6.2-1.fc46 fedora 93.9 KiB libunistring aarch64 0:1.1-12.fc45 fedora 1.7 MiB libusb1 aarch64 0:1.0.30-2.fc45 fedora 179.7 KiB libuuid aarch64 0:2.42.4-2.fc46 fedora 69.3 KiB libverto aarch64 0:0.3.2-13.fc45 fedora 69.3 KiB libxcrypt aarch64 0:4.5.2-4.fc45 fedora 273.2 KiB libxml2 aarch64 0:2.15.4-1.fc46 fedora 1.7 MiB libzstd aarch64 0:1.5.7-6.fc45 fedora 860.3 KiB linkdupes aarch64 0:0.7.3-3.fc45 fedora 711.0 KiB lua-libs aarch64 0:5.5.1-2.fc46 fedora 330.0 KiB lua-srpm-macros noarch 0:1-18.fc45 fedora 1.3 KiB lz4-libs aarch64 0:1.10.0-5.fc45 fedora 197.3 KiB meson-srpm-macros noarch 0:1.12.1-2.fc46 fedora 1.7 KiB mpfr aarch64 0:4.2.2-4.fc45 fedora 755.4 KiB ncurses-base noarch 0:6.6-3.fc45 fedora 329.7 KiB ncurses-libs aarch64 0:6.6-3.fc45 fedora 1.2 MiB nettle aarch64 0:4.0-5.fc45 fedora 836.7 KiB ngtcp2 aarch64 0:1.22.1-3.fc45 fedora 341.1 KiB ngtcp2-crypto-ossl aarch64 0:1.22.1-3.fc45 fedora 67.5 KiB npth aarch64 0:1.8-5.fc45 fedora 93.4 KiB ocaml-srpm-macros noarch 0:11-4.fc45 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-23.fc46 fedora 124.0 B openldap aarch64 0:2.6.15-1.fc46 fedora 765.6 KiB openssl-libs aarch64 1:4.0.3-1.fc46 fedora 5.8 MiB p11-kit aarch64 0:0.26.5-1.fc45 fedora 2.8 MiB p11-kit-trust aarch64 0:0.26.5-1.fc45 fedora 530.1 KiB package-notes-srpm-macros noarch 0:0.20-2.fc45 fedora 1.6 KiB pam-libs aarch64 0:1.7.2-4.fc45 fedora 222.7 KiB pcre2 aarch64 0:10.47-1.fc45.2 fedora 714.4 KiB pcre2-syntax noarch 0:10.47-1.fc45.2 fedora 281.9 KiB perl-srpm-macros noarch 0:1-65.fc45 fedora 861.0 B pkgconf aarch64 0:2.5.1-2.fc45 fedora 116.8 KiB pkgconf-m4 noarch 0:2.5.1-2.fc45 fedora 14.3 KiB pkgconf-pkg-config aarch64 0:2.5.1-2.fc45 fedora 990.0 B policycoreutils aarch64 0:3.11-2.fc45 fedora 1.5 MiB popt aarch64 0:1.19-11.fc45 fedora 144.7 KiB publicsuffix-list-dafsa noarch 0:20260624-2.fc45 fedora 71.3 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc45 fedora 3.4 KiB python-srpm-macros noarch 0:3.15-2.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-3.fc45 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc46 fedora 472.0 B readline aarch64 0:8.3-6.fc45 fedora 563.6 KiB redhat-systemd-presets noarch 0:102-3.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-3.fc45 fedora 16.9 KiB rpm aarch64 0:6.1.0-1.fc46 fedora 3.3 MiB rpm-build-libs aarch64 0:6.1.0-1.fc46 fedora 264.0 KiB rpm-libs aarch64 0:6.1.0-1.fc46 fedora 1.1 MiB rpm-plugin-selinux aarch64 0:6.1.0-1.fc46 fedora 67.9 KiB rpm-sequoia aarch64 0:1.10.3-1.fc46 fedora 2.3 MiB rpm-sign-libs aarch64 0:6.1.0-1.fc46 fedora 67.7 KiB rust-srpm-macros noarch 0:28.5-2.fc45 fedora 5.5 KiB selinux-policy noarch 0:45.21-1.fc46 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.21-1.fc46 fedora 19.0 MiB setup noarch 0:2.15.1-2.fc45 fedora 725.6 KiB sqlite-libs aarch64 0:3.53.4-1.fc45 fedora 1.6 MiB systemd-libs aarch64 0:262-3.fc46 fedora 2.8 MiB systemd-standalone-sysusers aarch64 0:262-3.fc46 fedora 979.3 KiB tpm2-tss aarch64 0:4.2.0-1.fc45 fedora 2.2 MiB tree-sitter-srpm-macros noarch 0:0.4.6-2.fc45 fedora 8.6 KiB util-linux-core aarch64 0:2.42.4-2.fc46 fedora 2.5 MiB xxhash-libs aarch64 0:0.8.4-1.fc46 fedora 85.8 KiB xz-libs aarch64 1:5.8.4-1.fc46 fedora 265.5 KiB zig-srpm-macros noarch 0:1-9.fc45 fedora 1.3 KiB zip aarch64 0:3.0-46.fc45 fedora 762.2 KiB zlib-ng-compat aarch64 0:2.3.3-6.fc45 fedora 133.4 KiB zstd aarch64 0:1.5.7-6.fc45 fedora 562.3 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 190 packages Total size of inbound packages is 69 MiB. Need to download 69 MiB. After this operation, 253 MiB extra will be used (install 253 MiB, remove 0 B). [ 1/190] bzip2-0:1.0.8-24.fc45.aarch64 100% | 17.0 MiB/s | 52.2 KiB | 00m00s [ 2/190] bash-0:5.3.20-1.fc46.aarch64 100% | 184.1 MiB/s | 1.8 MiB | 00m00s [ 3/190] cpio-0:2.15-10.fc45.aarch64 100% | 47.1 MiB/s | 289.7 KiB | 00m00s [ 4/190] diffutils-0:3.12-6.fc45.aarch 100% | 127.7 MiB/s | 392.3 KiB | 00m00s [ 5/190] fedora-release-common-0:46-0. 100% | 5.9 MiB/s | 18.2 KiB | 00m00s [ 6/190] coreutils-0:9.12-1.fc46.aarch 100% | 82.8 MiB/s | 1.2 MiB | 00m00s [ 7/190] findutils-1:4.11.0-2.fc45.aar 100% | 111.3 MiB/s | 569.9 KiB | 00m00s [ 8/190] gawk-0:5.4.1-1.fc45.aarch64 100% | 162.9 MiB/s | 1.1 MiB | 00m00s [ 9/190] glibc-minimal-langpack-0:2.44 100% | 26.8 MiB/s | 137.1 KiB | 00m00s [ 10/190] grep-0:3.12-4.fc45.aarch64 100% | 72.3 MiB/s | 296.0 KiB | 00m00s [ 11/190] gzip-0:1.14-4.fc45.aarch64 100% | 56.5 MiB/s | 173.6 KiB | 00m00s [ 12/190] info-0:7.3-3.fc45.aarch64 100% | 44.9 MiB/s | 183.9 KiB | 00m00s [ 13/190] patch-0:2.8-6.fc46.aarch64 100% | 27.1 MiB/s | 110.8 KiB | 00m00s [ 14/190] redhat-rpm-config-0:345-4.fc4 100% | 25.4 MiB/s | 78.1 KiB | 00m00s [ 15/190] rpm-build-0:6.1.0-1.fc46.aarc 100% | 49.8 MiB/s | 152.9 KiB | 00m00s [ 16/190] sed-0:4.10-2.fc45.aarch64 100% | 103.9 MiB/s | 319.1 KiB | 00m00s [ 17/190] tar-2:1.35-9.fc45.aarch64 100% | 119.2 MiB/s | 854.2 KiB | 00m00s [ 18/190] shadow-utils-2:4.20.0-1.fc45. 100% | 128.2 MiB/s | 1.4 MiB | 00m00s [ 19/190] unzip-0:6.0-71.fc45.aarch64 100% | 21.6 MiB/s | 199.1 KiB | 00m00s [ 20/190] which-0:2.25-2.fc45.aarch64 100% | 20.3 MiB/s | 41.7 KiB | 00m00s [ 21/190] util-linux-0:2.42.4-2.fc46.aa 100% | 155.5 MiB/s | 1.2 MiB | 00m00s [ 22/190] xz-1:5.8.4-1.fc46.aarch64 100% | 106.4 MiB/s | 653.9 KiB | 00m00s [ 23/190] ncurses-libs-0:6.6-3.fc45.aar 100% | 52.8 MiB/s | 324.6 KiB | 00m00s [ 24/190] filesystem-0:3.18-59.fc45.aar 100% | 139.7 MiB/s | 1.8 MiB | 00m00s [ 25/190] glibc-0:2.44.9000-4.fc46.aarc 100% | 147.7 MiB/s | 2.1 MiB | 00m00s [ 26/190] bzip2-libs-0:1.0.8-24.fc45.aa 100% | 6.7 MiB/s | 41.2 KiB | 00m00s [ 27/190] gmp-1:6.3.0-6.fc45.aarch64 100% | 52.9 MiB/s | 270.7 KiB | 00m00s [ 28/190] libacl-0:2.4.0-2.fc45.aarch64 100% | 5.2 MiB/s | 26.7 KiB | 00m00s [ 29/190] coreutils-common-0:9.12-1.fc4 100% | 185.8 MiB/s | 2.2 MiB | 00m00s [ 30/190] libattr-0:2.6.0-2.fc45.aarch6 100% | 5.8 MiB/s | 17.8 KiB | 00m00s [ 31/190] libcap-0:2.78-2.fc45.aarch64 100% | 28.8 MiB/s | 88.4 KiB | 00m00s [ 32/190] libselinux-0:3.11-5.fc46.aarc 100% | 24.4 MiB/s | 100.0 KiB | 00m00s [ 33/190] systemd-libs-0:262-3.fc46.aar 100% | 122.8 MiB/s | 880.4 KiB | 00m00s [ 34/190] fedora-repos-0:46-0.3.noarch 100% | 2.3 MiB/s | 9.6 KiB | 00m00s [ 35/190] openssl-libs-1:4.0.3-1.fc46.a 100% | 142.6 MiB/s | 2.1 MiB | 00m00s [ 36/190] redhat-systemd-presets-0:102- 100% | 1.2 MiB/s | 8.5 KiB | 00m00s [ 37/190] mpfr-0:4.2.2-4.fc45.aarch64 100% | 39.0 MiB/s | 319.4 KiB | 00m00s [ 38/190] glibc-common-0:2.44.9000-4.fc 100% | 135.3 MiB/s | 415.5 KiB | 00m00s [ 39/190] readline-0:8.3-6.fc45.aarch64 100% | 53.9 MiB/s | 221.0 KiB | 00m00s [ 40/190] pcre2-0:10.47-1.fc45.2.aarch6 100% | 61.1 MiB/s | 250.2 KiB | 00m00s [ 41/190] R-srpm-macros-0:1.3.7-3.fc45. 100% | 10.9 MiB/s | 11.1 KiB | 00m00s [ 42/190] ed-0:1.22.6-1.fc46.aarch64 100% | 41.0 MiB/s | 84.0 KiB | 00m00s [ 43/190] build-reproducibility-srpm-ma 100% | 3.5 MiB/s | 10.8 KiB | 00m00s [ 44/190] ansible-srpm-macros-0:1-22.fc 100% | 4.8 MiB/s | 19.8 KiB | 00m00s [ 45/190] cmake-srpm-macros-0:4.3.0-5.f 100% | 2.5 MiB/s | 10.3 KiB | 00m00s [ 46/190] efi-srpm-macros-0:6-9.fc45.no 100% | 10.5 MiB/s | 21.4 KiB | 00m00s [ 47/190] dwz-0:0.17-3.fc45.aarch64 100% | 43.3 MiB/s | 132.9 KiB | 00m00s [ 48/190] erlang-srpm-macros-0:0.4.0-1. 100% | 4.9 MiB/s | 10.0 KiB | 00m00s [ 49/190] file-0:5.48-3.fc46.aarch64 100% | 24.8 MiB/s | 50.7 KiB | 00m00s [ 50/190] filesystem-srpm-macros-0:3.18 100% | 12.9 MiB/s | 26.4 KiB | 00m00s [ 51/190] fonts-srpm-macros-1:5.0.0-4.f 100% | 13.3 MiB/s | 27.2 KiB | 00m00s [ 52/190] fpc-srpm-macros-0:1.3-17.fc45 100% | 3.8 MiB/s 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KiB | 00m00s [ 66/190] perl-srpm-macros-0:1-65.fc45. 100% | 8.2 MiB/s | 8.4 KiB | 00m00s [ 67/190] pyproject-srpm-macros-0:1.23. 100% | 15.2 MiB/s | 15.6 KiB | 00m00s [ 68/190] python-srpm-macros-0:3.15-2.f 100% | 11.6 MiB/s | 23.9 KiB | 00m00s [ 69/190] qt5-srpm-macros-0:5.15.18-3.f 100% | 7.9 MiB/s | 8.1 KiB | 00m00s [ 70/190] qt6-srpm-macros-0:6.11.2-1.fc 100% | 4.4 MiB/s | 9.1 KiB | 00m00s [ 71/190] rust-srpm-macros-0:28.5-2.fc4 100% | 5.6 MiB/s | 11.4 KiB | 00m00s [ 72/190] rpm-0:6.1.0-1.fc46.aarch64 100% | 139.9 MiB/s | 573.1 KiB | 00m00s [ 73/190] tree-sitter-srpm-macros-0:0.4 100% | 3.4 MiB/s | 14.0 KiB | 00m00s [ 74/190] zig-srpm-macros-0:1-9.fc45.no 100% | 2.9 MiB/s | 8.8 KiB | 00m00s [ 75/190] zip-0:3.0-46.fc45.aarch64 100% | 64.9 MiB/s | 265.9 KiB | 00m00s [ 76/190] debugedit-0:5.3-3.fc45.aarch6 100% | 21.2 MiB/s | 86.7 KiB | 00m00s [ 77/190] elfutils-0:0.196-1.fc46.aarch 100% | 89.6 MiB/s | 642.3 KiB | 00m00s [ 78/190] elfutils-libelf-0:0.196-1.fc4 100% | 32.9 MiB/s | 235.6 KiB | 00m00s [ 79/190] libarchive-0:3.8.9-2.fc46.aar 100% | 68.1 MiB/s | 418.3 KiB | 00m00s [ 80/190] libgcc-0:16.2.1-2.fc46.1.aarc 100% | 19.2 MiB/s | 118.1 KiB | 00m00s [ 81/190] pkgconf-pkg-config-0:2.5.1-2. 100% | 4.6 MiB/s | 9.5 KiB | 00m00s [ 82/190] binutils-0:2.47.50-12.fc46.aa 100% | 177.8 MiB/s | 5.3 MiB | 00m00s [ 83/190] libstdc++-0:16.2.1-2.fc46.1.a 100% | 64.0 MiB/s | 918.1 KiB | 00m00s [ 84/190] popt-0:1.19-11.fc45.aarch64 100% | 5.8 MiB/s | 65.1 KiB | 00m00s [ 85/190] rpm-build-libs-0:6.1.0-1.fc46 100% | 39.3 MiB/s | 120.6 KiB | 00m00s [ 86/190] zstd-0:1.5.7-6.fc45.aarch64 100% | 44.7 MiB/s | 183.0 KiB | 00m00s [ 87/190] rpm-libs-0:6.1.0-1.fc46.aarch 100% | 69.9 MiB/s | 429.5 KiB | 00m00s [ 88/190] audit-libs-0:4.2.1-2.fc45.aar 100% | 34.7 MiB/s | 142.0 KiB | 00m00s [ 89/190] libeconf-0:0.7.9-4.fc45.aarch 100% | 11.3 MiB/s | 34.8 KiB | 00m00s [ 90/190] libsemanage-0:3.11-4.fc46.aar 100% | 59.8 MiB/s | 122.4 KiB | 00m00s [ 91/190] libxcrypt-0:4.5.2-4.fc45.aarc 100% | 61.1 MiB/s | 125.2 KiB | 00m00s [ 92/190] pam-libs-0:1.7.2-4.fc45.aarch 100% | 27.7 MiB/s | 56.8 KiB | 00m00s [ 93/190] libblkid-0:2.42.4-2.fc46.aarc 100% | 61.8 MiB/s | 126.5 KiB | 00m00s [ 94/190] setup-0:2.15.1-2.fc45.noarch 100% | 51.3 MiB/s | 157.6 KiB | 00m00s [ 95/190] libcap-ng-0:0.9.6-1.fc46.aarc 100% | 17.2 MiB/s | 35.1 KiB | 00m00s [ 96/190] liblastlog2-0:2.42.4-2.fc46.a 100% | 24.3 MiB/s | 24.9 KiB | 00m00s [ 97/190] libfdisk-0:2.42.4-2.fc46.aarc 100% | 76.3 MiB/s | 156.2 KiB | 00m00s [ 98/190] libmount-0:2.42.4-2.fc46.aarc 100% | 81.5 MiB/s | 166.9 KiB | 00m00s [ 99/190] libsmartcols-0:2.42.4-2.fc46. 100% | 41.5 MiB/s | 85.0 KiB | 00m00s [100/190] libuuid-0:2.42.4-2.fc46.aarch 100% | 26.4 MiB/s | 27.0 KiB | 00m00s [101/190] util-linux-core-0:2.42.4-2.fc 100% | 185.1 MiB/s | 568.7 KiB | 00m00s [102/190] zlib-ng-compat-0:2.3.3-6.fc45 100% | 23.5 MiB/s | 72.1 KiB | 00m00s [103/190] xz-libs-1:5.8.4-1.fc46.aarch6 100% | 36.3 MiB/s | 111.4 KiB | 00m00s [104/190] ncurses-base-0:6.6-3.fc45.noa 100% | 28.7 MiB/s | 88.1 KiB | 00m00s [105/190] gnulib-l10n-0:20241231-4.fc45 100% | 49.0 MiB/s | 150.4 KiB | 00m00s [106/190] glibc-gconv-extra-0:2.44.9000 100% | 199.5 MiB/s | 1.8 MiB | 00m00s [107/190] libsepol-0:3.11-2.fc45.aarch6 100% | 53.1 MiB/s | 326.0 KiB | 00m00s [108/190] ca-certificates-0:2026.2.90_v 100% | 117.8 MiB/s | 964.7 KiB | 00m00s [109/190] crypto-policies-0:20260713-2. 100% | 23.8 MiB/s | 97.5 KiB | 00m00s [110/190] fips-provider-0:1.5.3-1.fc46. 100% | 184.2 MiB/s | 1.5 MiB | 00m00s [111/190] fedora-repos-rawhide-0:46-0.3 100% | 1.8 MiB/s | 9.0 KiB | 00m00s [112/190] fedora-gpg-keys-0:46-0.3.noar 100% | 23.4 MiB/s | 143.8 KiB | 00m00s [113/190] pcre2-syntax-0:10.47-1.fc45.2 100% | 53.7 MiB/s | 165.1 KiB | 00m00s [114/190] redhat-systemd-presets-common 100% | 4.3 MiB/s | 13.2 KiB | 00m00s [115/190] linkdupes-0:0.7.3-3.fc45.aarc 100% | 78.8 MiB/s | 322.6 KiB | 00m00s [116/190] add-determinism-0:0.7.3-3.fc4 100% | 70.0 MiB/s | 788.1 KiB 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libtasn1-0:4.21.0-2.fc45.aarc 100% | 17.9 MiB/s | 73.4 KiB | 00m00s [143/190] gnupg2-0:2.4.9-18.fc45.aarch6 100% | 146.5 MiB/s | 1.6 MiB | 00m00s [144/190] gnupg2-dirmngr-0:2.4.9-18.fc4 100% | 64.2 MiB/s | 263.1 KiB | 00m00s [145/190] gnupg2-gpg-agent-0:2.4.9-18.f 100% | 51.9 MiB/s | 266.0 KiB | 00m00s [146/190] gnupg2-keyboxd-0:2.4.9-18.fc4 100% | 29.5 MiB/s | 90.7 KiB | 00m00s [147/190] gnupg2-gpgconf-0:2.4.9-18.fc4 100% | 22.2 MiB/s | 113.7 KiB | 00m00s [148/190] gnupg2-verify-0:2.4.9-18.fc45 100% | 53.1 MiB/s | 163.1 KiB | 00m00s [149/190] libassuan-0:2.5.7-6.fc45.aarc 100% | 21.7 MiB/s | 66.7 KiB | 00m00s [150/190] libgpg-error-0:1.61-2.fc45.aa 100% | 80.8 MiB/s | 248.2 KiB | 00m00s [151/190] libgcrypt-0:1.12.4-1.fc46.aar 100% | 75.3 MiB/s | 539.5 KiB | 00m00s [152/190] npth-0:1.8-5.fc45.aarch64 100% | 6.1 MiB/s | 24.8 KiB | 00m00s [153/190] tpm2-tss-0:4.2.0-1.fc45.aarch 100% | 67.3 MiB/s | 413.5 KiB | 00m00s [154/190] libksba-0:1.8.1-1.fc46.aarch6 100% | 39.6 MiB/s | 162.3 KiB | 00m00s [155/190] libusb1-0:1.0.30-2.fc45.aarch 100% | 15.5 MiB/s | 79.2 KiB | 00m00s [156/190] openldap-0:2.6.15-1.fc46.aarc 100% | 35.2 MiB/s | 252.6 KiB | 00m00s [157/190] libidn2-0:2.3.8-4.fc45.aarch6 100% | 56.7 MiB/s | 174.3 KiB | 00m00s [158/190] gnutls-0:3.8.13-5.fc46.aarch6 100% | 86.6 MiB/s | 1.3 MiB | 00m00s [159/190] libunistring-0:1.1-12.fc45.aa 100% | 105.2 MiB/s | 538.4 KiB | 00m00s [160/190] nettle-0:4.0-5.fc45.aarch64 100% | 104.6 MiB/s | 428.3 KiB | 00m00s [161/190] cyrus-sasl-lib-0:2.1.28-37.fc 100% | 187.2 MiB/s | 766.6 KiB | 00m00s [162/190] libevent-0:2.1.13-1.fc46.aarc 100% | 66.6 MiB/s | 272.8 KiB | 00m00s [163/190] libtool-ltdl-0:2.6.2-1.fc46.a 100% | 11.6 MiB/s | 35.6 KiB | 00m00s [164/190] gdbm-libs-1:1.23-12.fc45.aarc 100% | 27.5 MiB/s | 56.3 KiB | 00m00s [165/190] fedora-release-0:46-0.1.noarc 100% | 11.6 MiB/s | 11.9 KiB | 00m00s [166/190] systemd-standalone-sysusers-0 100% | 128.8 MiB/s | 395.8 KiB | 00m00s [167/190] xxhash-libs-0:0.8.4-1.fc46.aa 100% | 16.6 MiB/s | 34.0 KiB | 00m00s [168/190] fedora-release-identity-basic 100% | 4.1 MiB/s | 12.7 KiB | 00m00s [169/190] libcurl-0:8.23.0~rc2-1.fc46.a 100% | 75.4 MiB/s | 463.3 KiB | 00m00s [170/190] krb5-libs-0:1.22.2-9.fc45.aar 100% | 82.5 MiB/s | 760.6 KiB | 00m00s [171/190] libbrotli-0:1.2.0-6.fc45.aarc 100% | 48.7 MiB/s | 348.8 KiB | 00m00s [172/190] libnghttp2-0:1.69.0-6.fc46.aa 100% | 18.2 MiB/s | 74.7 KiB | 00m00s [173/190] gdb-minimal-0:17.2-6.fc46.aar 100% | 180.9 MiB/s | 4.3 MiB | 00m00s [174/190] libnghttp3-0:1.18.0-1.fc45.aa 100% | 8.6 MiB/s | 70.1 KiB | 00m00s [175/190] libpsl-0:0.23.3-1.fc46.aarch6 100% | 13.2 MiB/s | 67.4 KiB | 00m00s [176/190] libssh-0:0.12.2-1.fc45.aarch6 100% | 135.3 MiB/s | 277.2 KiB | 00m00s [177/190] ngtcp2-crypto-ossl-0:1.22.1-3 100% | 12.8 MiB/s | 26.2 KiB | 00m00s [178/190] ngtcp2-0:1.22.1-3.fc45.aarch6 100% | 48.0 MiB/s | 147.5 KiB | 00m00s [179/190] keyutils-libs-0:1.6.3-8.fc45. 100% | 15.4 MiB/s | 31.5 KiB | 00m00s [180/190] libcom_err-0:1.47.4-2.fc45.aa 100% | 12.9 MiB/s | 26.5 KiB | 00m00s [181/190] libverto-0:0.3.2-13.fc45.aarc 100% | 20.0 MiB/s | 20.4 KiB | 00m00s [182/190] publicsuffix-list-dafsa-0:202 100% | 29.8 MiB/s | 61.1 KiB | 00m00s [183/190] libssh-config-0:0.12.2-1.fc45 100% | 8.7 MiB/s | 8.9 KiB | 00m00s [184/190] libfido2-0:1.17.0-6.fc46.aarc 100% | 24.2 MiB/s | 99.2 KiB | 00m00s [185/190] libcbor-0:0.14.0-3.fc45.aarch 100% | 11.4 MiB/s | 35.1 KiB | 00m00s [186/190] policycoreutils-0:3.11-2.fc45 100% | 51.2 MiB/s | 262.3 KiB | 00m00s [187/190] selinux-policy-0:45.21-1.fc46 100% | 6.8 MiB/s | 42.0 KiB | 00m00s [188/190] libselinux-utils-0:3.11-5.fc4 100% | 20.7 MiB/s | 127.0 KiB | 00m00s [189/190] rpm-plugin-selinux-0:6.1.0-1. 100% | 3.5 MiB/s | 18.0 KiB | 00m00s [190/190] selinux-policy-targeted-0:45. 100% | 213.2 MiB/s | 6.8 MiB | 00m00s -------------------------------------------------------------------------------- [190/190] Total 100% | 188.9 MiB/s | 68.6 MiB | 00m00s Running transaction Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x9488FB64: UserID : "Fedora (47) " Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary The key was successfully imported. [ 1/192] Verify package files 100% | 753.0 B/s | 190.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64 >>> [RPM] failed to open /var/lib/mock/fedora-rawhide-aarch64-1791323007.267307/root/etc/group for id/name lookup: No such file or directory [ 2/192] Prepare transaction 100% | 2.3 KiB/s | 190.0 B | 00m00s [ 3/192] Installing libgcc-0:16.2.1-2. 100% | 218.7 MiB/s | 224.0 KiB | 00m00s [ 4/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/192] Installing redhat-systemd-pre 100% | 17.7 MiB/s | 18.1 KiB | 00m00s [ 6/192] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/192] Installing publicsuffix-list- 100% | 70.3 MiB/s | 72.0 KiB | 00m00s [ 8/192] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0 B | 00m00s [ 9/192] Installing fedora-gpg-keys-0: 100% | 29.6 MiB/s | 181.7 KiB | 00m00s [ 10/192] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 11/192] Installing fedora-repos-0:46- 100% | 0.0 B/s | 5.9 KiB | 00m00s [ 12/192] Installing fedora-release-com 100% | 7.8 MiB/s | 8.0 KiB | 00m00s [ 13/192] Installing fedora-release-0:4 100% | 24.2 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/192] Installing setup-0:2.15.1-2.f 100% | 31.0 MiB/s | 731.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/192] Installing filesystem-0:3.18- 100% | 1.8 MiB/s | 253.6 KiB | 00m00s [ 16/192] Installing pkgconf-m4-0:2.5.1 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [ 17/192] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 18/192] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB | 00m00s [ 19/192] Installing coreutils-common-0 100% | 321.1 MiB/s | 11.6 MiB | 00m00s [ 20/192] Installing ncurses-base-0:6.6 100% | 49.6 MiB/s | 355.3 KiB | 00m00s [ 21/192] Installing bash-0:5.3.20-1.fc 100% | 187.4 MiB/s | 8.4 MiB | 00m00s [ 22/192] Installing glibc-common-0:2.4 100% | 47.6 MiB/s | 1.3 MiB | 00m00s [ 23/192] Installing glibc-gconv-extra- 100% | 397.5 MiB/s | 18.7 MiB | 00m00s [ 24/192] Installing glibc-0:2.44.9000- 100% | 137.3 MiB/s | 6.6 MiB | 00m00s [ 25/192] Installing ncurses-libs-0:6.6 100% | 249.1 MiB/s | 1.2 MiB | 00m00s [ 26/192] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/192] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.3 KiB | 00m00s [ 28/192] Installing bzip2-libs-0:1.0.8 100% | 71.9 MiB/s | 73.6 KiB | 00m00s [ 29/192] Installing libgpg-error-0:1.6 100% | 39.2 MiB/s | 1.0 MiB | 00m00s [ 30/192] Installing readline-0:8.3-6.f 100% | 184.1 MiB/s | 565.7 KiB | 00m00s [ 31/192] Installing libstdc++-0:16.2.1 100% | 330.2 MiB/s | 3.0 MiB | 00m00s [ 32/192] Installing libzstd-0:1.5.7-6. 100% | 280.5 MiB/s | 861.6 KiB | 00m00s [ 33/192] Installing elfutils-libelf-0: 100% | 364.6 MiB/s | 1.5 MiB | 00m00s [ 34/192] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB | 00m00s [ 35/192] Installing libgcrypt-0:1.12.4 100% | 300.9 MiB/s | 1.2 MiB | 00m00s [ 36/192] Installing gmp-1:6.3.0-6.fc45 100% | 214.9 MiB/s | 660.1 KiB | 00m00s [ 37/192] Installing libacl-0:2.4.0-2.f 100% | 67.1 MiB/s | 68.8 KiB | 00m00s [ 38/192] Installing systemd-libs-0:262 100% | 309.0 MiB/s | 2.8 MiB | 00m00s [ 39/192] Installing libuuid-0:2.42.4-2 100% | 68.8 MiB/s | 70.4 KiB | 00m00s [ 40/192] Installing popt-0:1.19-11.fc4 100% | 49.3 MiB/s | 151.3 KiB | 00m00s [ 41/192] Installing xz-libs-1:5.8.4-1. 100% | 260.3 MiB/s | 266.6 KiB | 00m00s [ 42/192] Installing sqlite-libs-0:3.53 100% | 261.4 MiB/s | 1.6 MiB | 00m00s [ 43/192] Installing npth-0:1.8-5.fc45. 100% | 92.3 MiB/s | 94.5 KiB | 00m00s [ 44/192] Installing elfutils-libs-0:0. 100% | 243.7 MiB/s | 748.5 KiB | 00m00s [ 45/192] Installing libblkid-0:2.42.4- 100% | 284.5 MiB/s | 291.3 KiB | 00m00s [ 46/192] Installing libsepol-0:3.11-2. 100% | 264.0 MiB/s | 810.9 KiB | 00m00s [ 47/192] Installing gnupg2-gpgconf-0:2 100% | 13.8 MiB/s | 323.9 KiB | 00m00s [ 48/192] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.8 KiB | 00m00s [ 49/192] Installing libselinux-0:3.11- 100% | 130.1 MiB/s | 266.5 KiB | 00m00s [ 50/192] Installing grep-0:3.12-4.fc45 100% | 38.4 MiB/s | 1.0 MiB | 00m00s [ 51/192] Installing sed-0:4.10-2.fc45. 100% | 32.1 MiB/s | 886.9 KiB | 00m00s [ 52/192] Installing findutils-1:4.11.0 100% | 69.5 MiB/s | 2.0 MiB | 00m00s [ 53/192] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB | 00m00s [ 54/192] Installing json-c-0:0.18-9.fc 100% | 136.5 MiB/s | 139.8 KiB | 00m00s [ 55/192] Installing libtasn1-0:4.21.0- 100% | 217.3 MiB/s | 222.5 KiB | 00m00s [ 56/192] Installing libunistring-0:1.1 100% | 291.0 MiB/s | 1.7 MiB | 00m00s [ 57/192] Installing libidn2-0:2.3.8-4. 100% | 61.5 MiB/s | 566.6 KiB | 00m00s [ 58/192] Installing crypto-policies-0: 100% | 22.3 MiB/s | 159.5 KiB | 00m00s [ 59/192] Installing xz-1:5.8.4-1.fc46. 100% | 50.1 MiB/s | 1.5 MiB | 00m00s [ 60/192] Installing libmount-0:2.42.4- 100% | 205.8 MiB/s | 421.5 KiB | 00m00s [ 61/192] Installing gnupg2-verify-0:2. 100% | 15.5 MiB/s | 365.7 KiB | 00m00s [ 62/192] Installing mpfr-0:4.2.2-4.fc4 100% | 246.4 MiB/s | 757.1 KiB | 00m00s [ 63/192] Installing gawk-0:5.4.1-1.fc4 100% | 97.5 MiB/s | 2.9 MiB | 00m00s [ 64/192] Installing dwz-0:0.17-3.fc45. 100% | 13.8 MiB/s | 324.0 KiB | 00m00s [ 65/192] Installing libksba-0:1.8.1-1. 100% | 200.3 MiB/s | 410.3 KiB | 00m00s [ 66/192] Installing unzip-0:6.0-71.fc4 100% | 19.3 MiB/s | 473.4 KiB | 00m00s [ 67/192] Installing file-libs-0:5.48-3 100% | 618.0 MiB/s | 12.4 MiB | 00m00s [ 68/192] Installing file-0:5.48-3.fc46 100% | 6.4 MiB/s | 143.4 KiB | 00m00s [ 69/192] Installing diffutils-0:3.12-6 100% | 58.0 MiB/s | 1.6 MiB | 00m00s [ 70/192] Installing libattr-0:2.6.0-2. 100% | 67.7 MiB/s | 69.3 KiB | 00m00s [ 71/192] Installing libeconf-0:0.7.9-4 100% | 80.6 MiB/s | 82.5 KiB | 00m00s [ 72/192] Installing libcap-ng-0:0.9.6- 100% | 159.0 MiB/s | 162.8 KiB | 00m00s [ 73/192] Installing audit-libs-0:4.2.1 100% | 238.9 MiB/s | 489.3 KiB | 00m00s [ 74/192] Installing pam-libs-0:1.7.2-4 100% | 219.8 MiB/s | 225.1 KiB | 00m00s [ 75/192] Installing libcap-0:2.78-2.fc 100% | 20.9 MiB/s | 513.5 KiB | 00m00s [ 76/192] Installing libsemanage-0:3.11 100% | 176.8 MiB/s | 362.0 KiB | 00m00s [ 77/192] Installing libsmartcols-0:2.4 100% | 220.1 MiB/s | 225.4 KiB | 00m00s [ 78/192] Installing alternatives-0:1.3 100% | 4.1 MiB/s | 91.7 KiB | 00m00s [ 79/192] Installing lua-libs-0:5.5.1-2 100% | 161.9 MiB/s | 331.5 KiB | 00m00s [ 80/192] Installing libffi-0:3.8.0-1.f 100% | 157.2 MiB/s | 161.0 KiB | 00m00s [ 81/192] Installing p11-kit-0:0.26.5-1 100% | 84.8 MiB/s | 2.8 MiB | 00m00s [ 82/192] Installing p11-kit-trust-0:0. 100% | 18.5 MiB/s | 531.9 KiB | 00m00s [ 83/192] Installing ngtcp2-0:1.22.1-3. 100% | 167.3 MiB/s | 342.7 KiB | 00m00s [ 84/192] Installing util-linux-core-0: 100% | 79.2 MiB/s | 2.5 MiB | 00m00s [ 85/192] Installing liblastlog2-0:2.42 100% | 27.3 MiB/s | 139.8 KiB | 00m00s [ 86/192] Installing zip-0:3.0-46.fc45. 100% | 28.8 MiB/s | 766.1 KiB | 00m00s [ 87/192] Installing gnupg2-keyboxd-0:2 100% | 45.8 MiB/s | 234.5 KiB | 00m00s [ 88/192] Installing libpsl-0:0.23.3-1. 100% | 130.4 MiB/s | 133.6 KiB | 00m00s [ 89/192] Installing tar-2:1.35-9.fc45. 100% | 91.1 MiB/s | 3.0 MiB | 00m00s [ 90/192] Installing linkdupes-0:0.7.3- 100% | 27.8 MiB/s | 712.4 KiB | 00m00s [ 91/192] Installing libselinux-utils-0 100% | 52.2 MiB/s | 1.4 MiB | 00m00s [ 92/192] Installing libfdisk-0:2.42.4- 100% | 205.0 MiB/s | 419.9 KiB | 00m00s [ 93/192] Installing fips-provider-0:1. 100% | 344.5 MiB/s | 3.8 MiB | 00m00s [ 94/192] Installing openssl-libs-1:4.0 100% | 322.9 MiB/s | 5.8 MiB | 00m00s [ 95/192] Installing coreutils-0:9.12-1 100% | 175.6 MiB/s | 8.6 MiB | 00m00s [ 96/192] Installing ca-certificates-0: 100% | 1.6 MiB/s | 2.5 MiB | 00m02s [ 97/192] Installing gzip-0:1.14-4.fc45 100% | 16.6 MiB/s | 443.1 KiB | 00m00s [ 98/192] Installing util-linux-0:2.42. 100% | 132.3 MiB/s | 7.0 MiB | 00m00s [ 99/192] Installing policycoreutils-0: 100% | 40.2 MiB/s | 1.5 MiB | 00m00s [100/192] Installing selinux-policy-0:4 100% | 1.9 MiB/s | 34.5 KiB | 00m00s [101/192] Installing selinux-policy-tar 100% | 142.9 MiB/s | 15.2 MiB | 00m00s [102/192] Installing rpm-sequoia-0:1.10 100% | 286.5 MiB/s | 2.3 MiB | 00m00s [103/192] Installing libfsverity-0:1.7- 100% | 67.8 MiB/s | 69.4 KiB | 00m00s [104/192] Installing libevent-0:2.1.13- 100% | 271.7 MiB/s | 1.1 MiB | 00m00s [105/192] Installing ngtcp2-crypto-ossl 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [106/192] Installing libusb1-0:1.0.30-2 100% | 16.1 MiB/s | 181.4 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/192] Installing tpm2-tss-0:4.2.0-1 100% | 279.3 MiB/s | 2.2 MiB | 00m00s [108/192] Installing ima-evm-utils-libs 100% | 91.7 MiB/s | 93.9 KiB | 00m00s [109/192] Installing gnupg2-gpg-agent-0 100% | 28.6 MiB/s | 850.8 KiB | 00m00s [110/192] Installing nettle-0:4.0-5.fc4 100% | 205.0 MiB/s | 839.8 KiB | 00m00s [111/192] Installing gnutls-0:3.8.13-5. 100% | 309.1 MiB/s | 3.7 MiB | 00m00s [112/192] Installing zstd-0:1.5.7-6.fc4 100% | 23.0 MiB/s | 565.9 KiB | 00m00s [113/192] Installing libxml2-0:2.15.4-1 100% | 61.5 MiB/s | 1.7 MiB | 00m00s [114/192] Installing bzip2-0:1.0.8-24.f 100% | 7.5 MiB/s | 175.7 KiB | 00m00s [115/192] Installing add-determinism-0: 100% | 68.0 MiB/s | 1.9 MiB | 00m00s [116/192] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [117/192] Installing cpio-0:2.15-10.fc4 100% | 40.6 MiB/s | 1.1 MiB | 00m00s [118/192] Installing ed-0:1.22.6-1.fc46 100% | 6.8 MiB/s | 161.2 KiB | 00m00s [119/192] Installing patch-0:2.8-6.fc46 100% | 11.2 MiB/s | 263.9 KiB | 00m00s [120/192] Installing jansson-0:2.14-5.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [121/192] Installing libpfm-0:4.13.0-23 100% | 247.4 MiB/s | 253.3 KiB | 00m00s [122/192] Installing lz4-libs-0:1.10.0- 100% | 193.8 MiB/s | 198.4 KiB | 00m00s [123/192] Installing libarchive-0:3.8.9 100% | 238.7 MiB/s | 977.6 KiB | 00m00s [124/192] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB | 00m00s [125/192] Installing libpkgconf-0:2.5.1 100% | 132.0 MiB/s | 135.2 KiB | 00m00s [126/192] Installing pkgconf-0:2.5.1-2. 100% | 5.1 MiB/s | 119.3 KiB | 00m00s [127/192] Installing pkgconf-pkg-config 100% | 80.6 KiB/s | 1.8 KiB | 00m00s [128/192] Installing libtool-ltdl-0:2.6 100% | 92.8 MiB/s | 95.0 KiB | 00m00s [129/192] Installing gdbm-libs-1:1.23-1 100% | 230.0 MiB/s | 235.5 KiB | 00m00s [130/192] Installing cyrus-sasl-lib-0:2 100% | 80.6 MiB/s | 2.4 MiB | 00m00s [131/192] Installing openldap-0:2.6.15- 100% | 187.8 MiB/s | 769.4 KiB | 00m00s [132/192] Installing gnupg2-dirmngr-0:2 100% | 21.9 MiB/s | 648.9 KiB | 00m00s [133/192] Installing gnupg2-0:2.4.9-18. 100% | 150.2 MiB/s | 6.5 MiB | 00m00s [134/192] Installing gpgverify-0:2.2-5. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [135/192] Installing systemd-standalone 100% | 38.3 MiB/s | 979.9 KiB | 00m00s [136/192] Installing rpm-libs-0:6.1.0-1 100% | 275.1 MiB/s | 1.1 MiB | 00m00s [137/192] Installing rpm-sign-libs-0:6. 100% | 66.9 MiB/s | 68.5 KiB | 00m00s [138/192] Installing rpm-build-libs-0:6 100% | 258.6 MiB/s | 264.9 KiB | 00m00s [139/192] Installing xxhash-libs-0:0.8. 100% | 85.1 MiB/s | 87.2 KiB | 00m00s [140/192] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.5 KiB | 00m00s [141/192] Installing libnghttp2-0:1.69. 100% | 194.4 MiB/s | 199.0 KiB | 00m00s [142/192] Installing libnghttp3-0:1.18. 100% | 203.3 MiB/s | 208.2 KiB | 00m00s [143/192] Installing keyutils-libs-0:1. 100% | 97.3 MiB/s | 99.7 KiB | 00m00s [144/192] Installing libcom_err-0:1.47. 100% | 109.6 MiB/s | 112.2 KiB | 00m00s [145/192] Installing libverto-0:0.3.2-1 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [146/192] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s | 2.5 MiB | 00m00s [147/192] Installing libcbor-0:0.14.0-3 100% | 137.7 MiB/s | 141.0 KiB | 00m00s [148/192] Installing libfido2-0:1.17.0- 100% | 137.8 MiB/s | 282.2 KiB | 00m00s [149/192] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB | 00m00s [150/192] Installing libcurl-0:8.23.0~r 100% | 255.7 MiB/s | 1.0 MiB | 00m00s [151/192] Installing elfutils-debuginfo 100% | 6.0 MiB/s | 146.3 KiB | 00m00s [152/192] Installing binutils-0:2.47.50 100% | 280.8 MiB/s | 27.2 MiB | 00m00s [153/192] Installing elfutils-0:0.196-1 100% | 114.5 MiB/s | 3.8 MiB | 00m00s [154/192] Installing gdb-minimal-0:17.2 100% | 229.4 MiB/s | 13.5 MiB | 00m00s [155/192] Installing debugedit-0:5.3-3. 100% | 13.2 MiB/s | 324.2 KiB | 00m00s [156/192] Installing curl-0:8.23.0~rc2- 100% | 16.6 MiB/s | 528.3 KiB | 00m00s [157/192] Installing rpm-0:6.1.0-1.fc46 100% | 61.2 MiB/s | 2.8 MiB | 00m00s [158/192] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [159/192] Installing efi-srpm-macros-0: 100% | 40.3 MiB/s | 41.3 KiB | 00m00s [160/192] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [161/192] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/192] Installing tree-sitter-srpm-m 100% | 9.4 MiB/s | 9.6 KiB | 00m00s [163/192] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [164/192] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [165/192] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [166/192] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [167/192] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [168/192] Installing perl-srpm-macros-0 100% | 185.5 KiB/s | 1.1 KiB | 00m00s [169/192] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/192] Installing openblas-srpm-macr 100% | 0.0 B/s | 404.0 B | 00m00s [171/192] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [172/192] Installing meson-srpm-macros- 100% | 0.0 B/s | 1.9 KiB | 00m00s [173/192] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [174/192] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [175/192] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [176/192] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [177/192] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [178/192] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [179/192] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [180/192] Installing redhat-rpm-config- 100% | 93.0 MiB/s | 190.4 KiB | 00m00s [181/192] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [182/192] Installing rpm-build-0:6.1.0- 100% | 23.5 MiB/s | 626.1 KiB | 00m00s [183/192] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.6 KiB | 00m00s [184/192] Installing pyproject-srpm-mac 100% | 0.0 B/s | 4.0 KiB | 00m00s [185/192] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [186/192] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [187/192] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [188/192] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [189/192] Installing rpm-plugin-selinux 100% | 67.3 MiB/s | 68.9 KiB | 00m00s [190/192] Installing which-0:2.25-2.fc4 100% | 5.1 MiB/s | 125.8 KiB | 00m00s [191/192] Installing shadow-utils-2:4.2 100% | 98.8 MiB/s | 4.4 MiB | 00m00s [192/192] Installing info-0:7.3-3.fc45. 100% | 53.0 KiB/s | 424.8 KiB | 00m08s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-3.fc45.noarch add-determinism-0.7.3-3.fc45.aarch64 alternatives-1.33-6.fc45.aarch64 ansible-srpm-macros-1-22.fc45.noarch audit-libs-4.2.1-2.fc45.aarch64 bash-5.3.20-1.fc46.aarch64 binutils-2.47.50-12.fc46.aarch64 build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch bzip2-1.0.8-24.fc45.aarch64 bzip2-libs-1.0.8-24.fc45.aarch64 ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch cmake-srpm-macros-4.3.0-5.fc45.noarch coreutils-9.12-1.fc46.aarch64 coreutils-common-9.12-1.fc46.aarch64 cpio-2.15-10.fc45.aarch64 crypto-policies-20260713-2.gitc42da77.fc45.noarch curl-8.23.0~rc2-1.fc46.aarch64 cyrus-sasl-lib-2.1.28-37.fc45.aarch64 debugedit-5.3-3.fc45.aarch64 diffutils-3.12-6.fc45.aarch64 dwz-0.17-3.fc45.aarch64 ed-1.22.6-1.fc46.aarch64 efi-srpm-macros-6-9.fc45.noarch elfutils-0.196-1.fc46.aarch64 elfutils-debuginfod-client-0.196-1.fc46.aarch64 elfutils-libelf-0.196-1.fc46.aarch64 elfutils-libs-0.196-1.fc46.aarch64 erlang-srpm-macros-0.4.0-1.fc46.noarch fedora-gpg-keys-46-0.3.noarch fedora-release-46-0.1.noarch fedora-release-common-46-0.1.noarch fedora-release-identity-basic-46-0.1.noarch fedora-repos-46-0.3.noarch fedora-repos-rawhide-46-0.3.noarch file-5.48-3.fc46.aarch64 file-libs-5.48-3.fc46.aarch64 filesystem-3.18-59.fc45.aarch64 filesystem-srpm-macros-3.18-59.fc45.noarch findutils-4.11.0-2.fc45.aarch64 fips-provider-1.5.3-1.fc46.aarch64 fonts-srpm-macros-5.0.0-4.fc45.noarch forge-srpm-macros-0.4.0-5.fc45.noarch fpc-srpm-macros-1.3-17.fc45.noarch gap-srpm-macros-2-3.fc45.noarch gawk-5.4.1-1.fc45.aarch64 gdb-minimal-17.2-6.fc46.aarch64 gdbm-libs-1.23-12.fc45.aarch64 ghc-srpm-macros-1.10-2.fc45.noarch glibc-2.44.9000-4.fc46.aarch64 glibc-common-2.44.9000-4.fc46.aarch64 glibc-gconv-extra-2.44.9000-4.fc46.aarch64 glibc-minimal-langpack-2.44.9000-4.fc46.aarch64 gmp-6.3.0-6.fc45.aarch64 gnat-srpm-macros-7-3.fc45.noarch gnome-srpm-macros-1.0-2.fc45.noarch gnulib-l10n-20241231-4.fc45.noarch gnupg2-2.4.9-18.fc45.aarch64 gnupg2-dirmngr-2.4.9-18.fc45.aarch64 gnupg2-gpg-agent-2.4.9-18.fc45.aarch64 gnupg2-gpgconf-2.4.9-18.fc45.aarch64 gnupg2-keyboxd-2.4.9-18.fc45.aarch64 gnupg2-verify-2.4.9-18.fc45.aarch64 gnutls-3.8.13-5.fc46.aarch64 go-srpm-macros-3.8.0-3.fc45.noarch gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-5.fc45.noarch grep-3.12-4.fc45.aarch64 gzip-1.14-4.fc45.aarch64 ima-evm-utils-libs-1.6.2-12.fc45.aarch64 info-7.3-3.fc45.aarch64 jansson-2.14-5.fc45.aarch64 java-srpm-macros-1-9.fc45.noarch json-c-0.18-9.fc45.aarch64 kernel-srpm-macros-1.0-30.fc45.noarch keyutils-libs-1.6.3-8.fc45.aarch64 krb5-libs-1.22.2-9.fc45.aarch64 libacl-2.4.0-2.fc45.aarch64 libarchive-3.8.9-2.fc46.aarch64 libassuan-2.5.7-6.fc45.aarch64 libattr-2.6.0-2.fc45.aarch64 libblkid-2.42.4-2.fc46.aarch64 libbrotli-1.2.0-6.fc45.aarch64 libcap-2.78-2.fc45.aarch64 libcap-ng-0.9.6-1.fc46.aarch64 libcbor-0.14.0-3.fc45.aarch64 libcom_err-1.47.4-2.fc45.aarch64 libcurl-8.23.0~rc2-1.fc46.aarch64 libeconf-0.7.9-4.fc45.aarch64 libevent-2.1.13-1.fc46.aarch64 libfdisk-2.42.4-2.fc46.aarch64 libffi-3.8.0-1.fc46.aarch64 libfido2-1.17.0-6.fc46.aarch64 libfsverity-1.7-4.fc45.aarch64 libgcc-16.2.1-2.fc46.1.aarch64 libgcrypt-1.12.4-1.fc46.aarch64 libgomp-16.2.1-2.fc46.1.aarch64 libgpg-error-1.61-2.fc45.aarch64 libidn2-2.3.8-4.fc45.aarch64 libksba-1.8.1-1.fc46.aarch64 liblastlog2-2.42.4-2.fc46.aarch64 libmount-2.42.4-2.fc46.aarch64 libnghttp2-1.69.0-6.fc46.aarch64 libnghttp3-1.18.0-1.fc45.aarch64 libpfm-4.13.0-23.fc45.aarch64 libpkgconf-2.5.1-2.fc45.aarch64 libpsl-0.23.3-1.fc46.aarch64 libselinux-3.11-5.fc46.aarch64 libselinux-utils-3.11-5.fc46.aarch64 libsemanage-3.11-4.fc46.aarch64 libsepol-3.11-2.fc45.aarch64 libsmartcols-2.42.4-2.fc46.aarch64 libssh-0.12.2-1.fc45.aarch64 libssh-config-0.12.2-1.fc45.noarch libstdc++-16.2.1-2.fc46.1.aarch64 libtasn1-4.21.0-2.fc45.aarch64 libtool-ltdl-2.6.2-1.fc46.aarch64 libunistring-1.1-12.fc45.aarch64 libusb1-1.0.30-2.fc45.aarch64 libuuid-2.42.4-2.fc46.aarch64 libverto-0.3.2-13.fc45.aarch64 libxcrypt-4.5.2-4.fc45.aarch64 libxml2-2.15.4-1.fc46.aarch64 libzstd-1.5.7-6.fc45.aarch64 linkdupes-0.7.3-3.fc45.aarch64 lua-libs-5.5.1-2.fc46.aarch64 lua-srpm-macros-1-18.fc45.noarch lz4-libs-1.10.0-5.fc45.aarch64 meson-srpm-macros-1.12.1-2.fc46.noarch mpfr-4.2.2-4.fc45.aarch64 ncurses-base-6.6-3.fc45.noarch ncurses-libs-6.6-3.fc45.aarch64 nettle-4.0-5.fc45.aarch64 ngtcp2-1.22.1-3.fc45.aarch64 ngtcp2-crypto-ossl-1.22.1-3.fc45.aarch64 npth-1.8-5.fc45.aarch64 ocaml-srpm-macros-11-4.fc45.noarch openblas-srpm-macros-2-23.fc46.noarch openldap-2.6.15-1.fc46.aarch64 openssl-libs-4.0.3-1.fc46.aarch64 p11-kit-0.26.5-1.fc45.aarch64 p11-kit-trust-0.26.5-1.fc45.aarch64 package-notes-srpm-macros-0.20-2.fc45.noarch pam-libs-1.7.2-4.fc45.aarch64 patch-2.8-6.fc46.aarch64 pcre2-10.47-1.fc45.2.aarch64 pcre2-syntax-10.47-1.fc45.2.noarch perl-srpm-macros-1-65.fc45.noarch pkgconf-2.5.1-2.fc45.aarch64 pkgconf-m4-2.5.1-2.fc45.noarch pkgconf-pkg-config-2.5.1-2.fc45.aarch64 policycoreutils-3.11-2.fc45.aarch64 popt-1.19-11.fc45.aarch64 publicsuffix-list-dafsa-20260624-2.fc45.noarch pyproject-srpm-macros-1.23.2-1.fc45.noarch python-srpm-macros-3.15-2.fc45.noarch qt5-srpm-macros-5.15.18-3.fc45.noarch qt6-srpm-macros-6.11.2-1.fc46.noarch readline-8.3-6.fc45.aarch64 redhat-rpm-config-345-4.fc46.noarch redhat-systemd-presets-102-3.fc45.noarch redhat-systemd-presets-common-102-3.fc45.noarch rpm-6.1.0-1.fc46.aarch64 rpm-build-6.1.0-1.fc46.aarch64 rpm-build-libs-6.1.0-1.fc46.aarch64 rpm-libs-6.1.0-1.fc46.aarch64 rpm-plugin-selinux-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 rpm-sign-libs-6.1.0-1.fc46.aarch64 rust-srpm-macros-28.5-2.fc45.noarch sed-4.10-2.fc45.aarch64 selinux-policy-45.21-1.fc46.noarch selinux-policy-targeted-45.21-1.fc46.noarch setup-2.15.1-2.fc45.noarch shadow-utils-4.20.0-1.fc45.aarch64 sqlite-libs-3.53.4-1.fc45.aarch64 systemd-libs-262-3.fc46.aarch64 systemd-standalone-sysusers-262-3.fc46.aarch64 tar-1.35-9.fc45.aarch64 tpm2-tss-4.2.0-1.fc45.aarch64 tree-sitter-srpm-macros-0.4.6-2.fc45.noarch unzip-6.0-71.fc45.aarch64 util-linux-2.42.4-2.fc46.aarch64 util-linux-core-2.42.4-2.fc46.aarch64 which-2.25-2.fc45.aarch64 xxhash-libs-0.8.4-1.fc46.aarch64 xz-5.8.4-1.fc46.aarch64 xz-libs-5.8.4-1.fc46.aarch64 zig-srpm-macros-1-9.fc45.noarch zip-3.0-46.fc45.aarch64 zlib-ng-compat-2.3.3-6.fc45.aarch64 zstd-1.5.7-6.fc45.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1791072000 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-8.fc46.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1791323007.267307/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-mllxwlda/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 26 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-8.fc46.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791323007.267307/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791323007.267307/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791323007.267307/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.aarch64 rpm-sequoia-1.10.3-1.fc46.aarch64 dnf5-5.4.6.0-1.fc46.aarch64 dnf5-plugins-5.4.6.0-1.fc46.aarch64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-8.fc46.src.rpm Start: build setup for mrtrix3-3.0.8-8.fc46.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1791072000 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-8.fc46.src.rpm Updating and loading repositories: fedora 100% | 181.8 KiB/s | 9.3 KiB | 00m00s Copr repository 100% | 153.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils aarch64 0:0.28-8.fc45 fedora 318.3 KiB eigen3-devel noarch 0:5.0.1-4.fc45 fedora 9.5 MiB fftw-devel aarch64 0:3.3.10-18.fc45 fedora 282.2 KiB gcc-c++ aarch64 0:16.2.1-2.fc46.1 fedora 44.8 MiB git aarch64 0:2.56.0-1.fc46 fedora 57.7 KiB libappstream-glib aarch64 0:0.8.4-1.fc45 fedora 1.5 MiB libpng-devel aarch64 2:1.6.58-2.fc45 fedora 978.0 KiB libtiff-devel aarch64 0:4.7.2-2.fc45 fedora 884.7 KiB mesa-libGL-devel aarch64 0:26.2.4-1.fc46 fedora 80.8 KiB mesa-libGLU-devel aarch64 0:9.0.3-9.fc45 fedora 17.0 KiB python3 aarch64 0:3.15.0~rc3-2.fc46 fedora 84.8 KiB python3-devel aarch64 0:3.15.0~rc3-2.fc46 fedora 2.5 MiB qt5-qtbase-devel aarch64 0:5.15.18-5.fc45 fedora 19.1 MiB qt5-qtsvg-devel aarch64 0:5.15.18-3.fc45 fedora 83.5 KiB zlib-ng-compat-devel aarch64 0:2.3.3-6.fc45 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-18.fc45 fedora 192.7 KiB annobin-docs noarch 0:13.32-1.fc46 fedora 99.7 KiB annobin-plugin-gcc aarch64 0:13.32-1.fc46 fedora 736.6 KiB avahi-libs aarch64 0:0.9~rc2-9.fc45 fedora 230.1 KiB bubblewrap aarch64 0:0.12.0-1.fc46 fedora 183.8 KiB cairo aarch64 0:1.18.6-1.fc46 fedora 1.8 MiB cairo-gobject aarch64 0:1.18.6-1.fc46 fedora 67.1 KiB cmake aarch64 0:4.3.0-5.fc45 fedora 32.8 MiB cmake-data noarch 0:4.3.0-5.fc45 fedora 9.4 MiB cmake-filesystem aarch64 0:4.3.0-5.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-5.fc45 fedora 8.4 KiB cpp aarch64 0:16.2.1-2.fc46.1 fedora 40.8 MiB cups-filesystem noarch 1:2.4.19-4.fc45 fedora 0.0 B cups-libs aarch64 1:2.4.19-4.fc45 fedora 730.9 KiB dbus-libs aarch64 1:1.16.2-6.fc45 fedora 397.6 KiB default-fonts-core-sans noarch 0:4.3-3.fc45 fedora 11.9 KiB double-conversion aarch64 0:3.4.0-4.fc45 fedora 141.1 KiB duktape aarch64 0:2.7.0-12.fc45 fedora 671.7 KiB emacs-filesystem aarch64 1:31.1-1.fc46 fedora 0.0 B expat aarch64 0:2.8.3-1.fc46 fedora 378.4 KiB fftw aarch64 0:3.3.10-18.fc45 fedora 221.0 KiB fftw-libs aarch64 0:3.3.10-18.fc45 fedora 0.0 B fftw-libs-double aarch64 0:3.3.10-18.fc45 fedora 1.8 MiB fftw-libs-long aarch64 0:3.3.10-18.fc45 fedora 2.3 MiB fftw-libs-single aarch64 0:3.3.10-18.fc45 fedora 1.9 MiB fontconfig aarch64 0:2.18.3-2.fc46 fedora 1.6 MiB fonts-filesystem noarch 1:5.0.0-4.fc45 fedora 0.0 B freetype aarch64 0:2.14.3-2.fc45 fedora 878.6 KiB fribidi aarch64 0:1.0.17-2.fc46 fedora 446.6 KiB gcc aarch64 0:16.2.1-2.fc46.1 fedora 112.5 MiB gcc-plugin-annobin aarch64 0:16.2.1-2.fc46.1 fedora 69.1 KiB gdk-pixbuf2 aarch64 0:2.44.8-3.fc46 fedora 2.7 MiB git-core aarch64 0:2.56.0-1.fc46 fedora 27.0 MiB git-core-doc noarch 0:2.56.0-1.fc46 fedora 19.1 MiB glib2 aarch64 0:2.90.0-1.fc46 fedora 15.8 MiB glibc-devel aarch64 0:2.44.9000-4.fc46 fedora 2.3 MiB glx-utils aarch64 0:9.0.0-12.fc45 fedora 590.2 KiB glycin-libs aarch64 0:2.2.1-1.fc46 fedora 4.4 MiB glycin-loaders aarch64 0:2.2.1-1.fc46 fedora 13.4 MiB google-noto-fonts-common noarch 0:20260901-4.fc46 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260901-4.fc46 fedora 1.4 MiB graphite2 aarch64 0:1.3.14-22.fc45 fedora 239.4 KiB groff-base aarch64 0:1.24.2-1.fc46 fedora 4.5 MiB harfbuzz aarch64 0:14.5.1-1.fc46 fedora 2.8 MiB highway aarch64 0:1.3.0-3.fc45 fedora 1.5 MiB hwdata noarch 0:0.412-1.fc46 fedora 10.1 MiB jbigkit-libs aarch64 0:2.1-34.fc45 fedora 181.3 KiB json-glib aarch64 0:1.10.8-11.fc45 fedora 616.3 KiB jsoncpp aarch64 0:1.9.6-3.fc44 fedora 271.7 KiB kernel-headers aarch64 0:7.3.0-0.rc5.45.fc46 fedora 6.9 MiB less aarch64 0:710-1.fc46 fedora 548.7 KiB libICE aarch64 0:1.1.2-5.fc45 fedora 222.3 KiB libSM aarch64 0:1.2.5-5.fc45 fedora 129.0 KiB libX11 aarch64 0:1.8.13-3.fc46 fedora 1.3 MiB libX11-common noarch 0:1.8.13-3.fc46 fedora 1.1 MiB libX11-devel aarch64 0:1.8.13-3.fc46 fedora 1.0 MiB libX11-xcb aarch64 0:1.8.13-3.fc46 fedora 66.9 KiB libXau aarch64 0:1.0.12-5.fc45 fedora 120.9 KiB libXau-devel aarch64 0:1.0.12-5.fc45 fedora 7.3 KiB libXext aarch64 0:1.3.6-6.fc45 fedora 145.8 KiB libXft aarch64 0:2.3.8-11.fc45 fedora 192.3 KiB libXrender aarch64 0:0.9.12-5.fc45 fedora 69.9 KiB libXxf86vm aarch64 0:1.1.6-5.fc45 fedora 69.2 KiB libaom aarch64 0:3.13.3-3.fc45 fedora 3.8 MiB libasan aarch64 0:16.2.1-2.fc46.1 fedora 1.5 MiB libatomic aarch64 0:16.2.1-2.fc46.1 fedora 77.7 KiB libdatrie aarch64 0:0.2.14-3.fc45 fedora 93.8 KiB libdav1d aarch64 0:1.5.4-1.fc46 fedora 920.8 KiB libdrm aarch64 0:2.4.134-2.fc45 fedora 765.3 KiB libdrm-devel aarch64 0:2.4.134-2.fc45 fedora 791.1 KiB libedit aarch64 0:3.1-60.20260512cvs.fc45 fedora 280.3 KiB libevdev aarch64 0:1.13.7-1.fc46 fedora 134.0 KiB libglvnd aarch64 1:1.7.0-10.fc45 fedora 1.3 MiB libglvnd-core-devel aarch64 1:1.7.0-10.fc45 fedora 40.3 KiB libglvnd-devel aarch64 1:1.7.0-10.fc45 fedora 2.1 MiB libglvnd-egl aarch64 1:1.7.0-10.fc45 fedora 68.8 KiB libglvnd-gles aarch64 1:1.7.0-10.fc45 fedora 394.1 KiB libglvnd-glx aarch64 1:1.7.0-10.fc45 fedora 1.0 MiB libglvnd-opengl aarch64 1:1.7.0-10.fc45 fedora 329.0 KiB libgudev aarch64 0:238-10.fc45 fedora 103.7 KiB libheif aarch64 0:1.23.5-4.fc46 fedora 2.6 MiB libicu aarch64 0:78.3-8.fc45 fedora 37.8 MiB libinput aarch64 0:1.32.0-1.fc46 fedora 955.3 KiB libjpeg-turbo aarch64 0:3.1.4.1-2.fc45 fedora 681.3 KiB libjpeg-turbo-devel aarch64 0:3.1.4.1-2.fc45 fedora 354.2 KiB libjxl aarch64 1:0.11.2-2.fc45 fedora 2.6 MiB liblerc aarch64 0:4.2.0-1.fc45 fedora 547.5 KiB liblerc-devel aarch64 0:4.2.0-1.fc45 fedora 4.3 MiB libmpc aarch64 0:1.4.1-2.fc45 fedora 216.8 KiB libopenjph aarch64 0:0.31.0-1.fc46 fedora 325.9 KiB libpciaccess aarch64 0:0.16-18.fc45 fedora 72.4 KiB libpciaccess-devel aarch64 0:0.16-18.fc45 fedora 15.3 KiB libpng aarch64 2:1.6.58-2.fc45 fedora 269.7 KiB libproxy aarch64 0:0.5.12-3.fc45 fedora 166.1 KiB librsvg2 aarch64 0:2.63.2-1.fc46 fedora 4.6 MiB libseccomp aarch64 0:2.6.1-3.fc45 fedora 246.3 KiB libstdc++-devel aarch64 0:16.2.1-2.fc46.1 fedora 40.4 MiB libthai aarch64 0:0.1.30-3.fc45 fedora 824.9 KiB libtiff aarch64 0:4.7.2-2.fc45 fedora 659.4 KiB libubsan aarch64 0:16.2.1-2.fc46.1 fedora 475.9 KiB libuv aarch64 1:1.52.1-2.fc45 fedora 616.4 KiB libwacom aarch64 0:2.20.0-1.fc46 fedora 150.1 KiB libwacom-data noarch 0:2.20.0-1.fc46 fedora 1.4 MiB libwayland-client aarch64 0:1.26.0-3.fc46 fedora 70.1 KiB libwebp aarch64 0:1.6.0-4.fc45 fedora 817.0 KiB libwebp-devel aarch64 0:1.6.0-4.fc45 fedora 121.7 KiB libxcb aarch64 0:1.17.0-8.fc45 fedora 2.1 MiB libxcb-devel aarch64 0:1.17.0-8.fc45 fedora 2.6 MiB libxcrypt-devel aarch64 0:4.5.2-4.fc45 fedora 31.0 KiB libxkbcommon aarch64 0:1.13.1-4.fc46 fedora 471.6 KiB libxkbcommon-x11 aarch64 0:1.13.1-4.fc46 fedora 67.5 KiB libxshmfence aarch64 0:1.3.2-9.fc45 fedora 68.4 KiB libzstd-devel aarch64 0:1.5.7-6.fc45 fedora 217.6 KiB llvm-filesystem aarch64 0:23.1.2-1.fc46 fedora 0.0 B llvm-libs aarch64 0:23.1.2-1.fc46 fedora 140.0 MiB lm_sensors-libs aarch64 0:3.6.0-25.fc45 fedora 93.7 KiB lzo aarch64 0:2.10-17.fc45 fedora 162.9 KiB make aarch64 1:4.4.1-13.fc45 fedora 1.8 MiB mesa-dri-drivers aarch64 0:26.2.4-1.fc46 fedora 39.4 MiB mesa-filesystem aarch64 0:26.2.4-1.fc46 fedora 3.6 KiB mesa-libEGL aarch64 0:26.2.4-1.fc46 fedora 394.4 KiB mesa-libGL aarch64 0:26.2.4-1.fc46 fedora 398.0 KiB mesa-libGLU aarch64 0:9.0.3-9.fc45 fedora 329.5 KiB mesa-libgbm aarch64 0:26.2.4-1.fc46 fedora 67.7 KiB mpdecimal aarch64 0:4.0.1-4.fc45 fedora 281.1 KiB mtdev aarch64 0:1.1.6-13.fc45 fedora 69.1 KiB ncurses aarch64 0:6.6-3.fc45 fedora 895.8 KiB ninja-build aarch64 0:1.13.2-6.fc45 fedora 468.8 KiB noopenh264 aarch64 0:2.6.0-5.fc45 fedora 95.1 KiB openjpeg aarch64 0:2.5.4-4.fc45 fedora 412.3 KiB openssh aarch64 0:10.5p1-1.fc46 fedora 1.6 MiB openssh-clients aarch64 0:10.5p1-1.fc46 fedora 2.6 MiB pango aarch64 0:1.58.2-1.fc45 fedora 1.2 MiB pcre2-utf16 aarch64 0:10.47-1.fc45.2 fedora 582.9 KiB perl-AutoLoader noarch 0:5.74-527.fc45 fedora 20.6 KiB perl-B aarch64 0:1.92-527.fc45 fedora 557.5 KiB perl-Carp noarch 0:1.54-527.fc45 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-527.fc45 fedora 25.4 KiB perl-Data-Dumper aarch64 0:2.192-528.fc45 fedora 135.5 KiB perl-Digest noarch 0:1.20-527.fc45 fedora 35.2 KiB perl-Digest-MD5 aarch64 0:2.59-527.fc45 fedora 103.6 KiB perl-DynaLoader aarch64 0:1.57-527.fc45 fedora 32.1 KiB perl-Encode aarch64 4:3.24-527.fc45 fedora 4.8 MiB perl-English noarch 0:1.12-527.fc45 fedora 6.2 KiB perl-Errno aarch64 0:1.39-527.fc45 fedora 8.4 KiB perl-Error noarch 1:0.17030-4.fc45 fedora 76.8 KiB perl-Exporter noarch 0:5.79-527.fc45 fedora 54.2 KiB perl-Fcntl aarch64 0:1.20-527.fc45 fedora 92.7 KiB perl-File-Basename noarch 0:2.86-527.fc45 fedora 14.0 KiB perl-File-Find noarch 0:1.44-527.fc45 fedora 42.0 KiB perl-File-Path noarch 0:2.18-527.fc45 fedora 63.4 KiB perl-File-Temp noarch 1:0.231.200-527.fc45 fedora 163.7 KiB perl-File-stat noarch 0:1.15-527.fc45 fedora 13.7 KiB perl-FileHandle noarch 0:2.05-527.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-527.fc45 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.15-527.fc45 fedora 12.5 KiB perl-Git noarch 0:2.56.0-1.fc46 fedora 64.4 KiB perl-HTTP-Tiny noarch 0:0.096-528.fc45 fedora 162.4 KiB perl-IO aarch64 0:1.56-527.fc45 fedora 191.3 KiB perl-IO-Socket-IP noarch 0:0.44-527.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.099-2.fc45 fedora 726.9 KiB perl-IPC-Open3 noarch 0:1.24-527.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-26.fc45 fedora 30.7 KiB perl-MIME-Base64 aarch64 0:3.16-527.fc45 fedora 93.9 KiB perl-Net-SSLeay aarch64 0:1.96-5.fc45 fedora 1.4 MiB perl-POSIX aarch64 0:2.26-527.fc45 fedora 261.4 KiB perl-PathTools aarch64 0:3.95-527.fc45 fedora 224.0 KiB perl-Pod-Escapes noarch 1:1.07-527.fc45 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-527.fc45 fedora 163.8 KiB perl-Pod-Simple noarch 1:3.48-527.fc45 fedora 565.2 KiB perl-Pod-Usage noarch 4:2.05-527.fc45 fedora 86.3 KiB perl-Scalar-List-Utils aarch64 5:1.70-527.fc45 fedora 152.9 KiB perl-SelectSaver noarch 0:1.03-527.fc45 fedora 2.1 KiB perl-Socket aarch64 4:2.043-1.fc46 fedora 145.8 KiB perl-Storable aarch64 1:3.41-527.fc45 fedora 242.9 KiB perl-Symbol noarch 0:1.09-527.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-527.fc45 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-527.fc45 fedora 29.3 KiB perl-TermReadKey aarch64 0:2.38-29.fc45 fedora 107.9 KiB perl-Text-ParseWords noarch 0:3.31-527.fc45 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-527.fc45 fedora 22.6 KiB perl-Time-HiRes aarch64 4:1.9780-527.fc45 fedora 151.7 KiB perl-Time-Local noarch 2:1.350-527.fc45 fedora 69.0 KiB perl-URI noarch 0:5.37-1.fc46 fedora 275.5 KiB perl-Unicode-Normalize aarch64 0:1.32-527.fc45 fedora 524.5 KiB perl-base noarch 0:2.27-527.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-528.fc45 fedora 26.3 KiB perl-if noarch 0:0.61.000-527.fc45 fedora 5.8 KiB perl-interpreter aarch64 4:5.44.0-527.fc45 fedora 175.8 KiB perl-lib aarch64 0:0.65-527.fc45 fedora 8.5 KiB perl-libnet noarch 0:3.15-528.fc45 fedora 288.4 KiB perl-libs aarch64 4:5.44.0-527.fc45 fedora 12.0 MiB perl-locale noarch 0:1.13-527.fc45 fedora 6.1 KiB perl-mro aarch64 0:1.30-527.fc45 fedora 81.5 KiB perl-overload noarch 0:1.40-527.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.03-527.fc45 fedora 4.8 KiB perl-parent noarch 1:0.244-527.fc45 fedora 10.3 KiB perl-podlators noarch 1:6.1.1-1.fc46 fedora 327.2 KiB perl-vars noarch 0:1.05-527.fc45 fedora 3.9 KiB pixman aarch64 0:0.46.2-4.fc45 fedora 654.4 KiB pyproject-rpm-macros noarch 0:1.23.2-1.fc45 fedora 156.3 KiB python-pip-wheel noarch 0:26.2.1-1.fc46 fedora 1.3 MiB python-rpm-macros noarch 0:3.15-2.fc45 fedora 28.0 KiB python3-libs aarch64 0:3.15.0~rc3-2.fc46 fedora 49.8 MiB python3-packaging noarch 0:26.3-1.fc46 fedora 1.3 MiB python3-rpm-generators noarch 0:14-35.fc46 fedora 81.9 KiB python3-rpm-macros noarch 0:3.15-2.fc45 fedora 6.5 KiB qt-settings noarch 0:44.0-1.fc46 fedora 1.1 KiB qt5-filesystem aarch64 0:5.15.18-3.fc45 fedora 0.0 B qt5-qtbase aarch64 0:5.15.18-5.fc45 fedora 10.3 MiB qt5-qtbase-common noarch 0:5.15.18-5.fc45 fedora 78.0 B qt5-qtbase-gui aarch64 0:5.15.18-5.fc45 fedora 21.1 MiB qt5-qtsvg aarch64 0:5.15.18-3.fc45 fedora 719.0 KiB qt5-rpm-macros noarch 0:5.15.18-3.fc45 fedora 1.6 KiB rav1e-libs aarch64 0:0.8.1-5.fc46 fedora 2.1 MiB rhash aarch64 0:1.4.5-5.fc45 fedora 394.6 KiB shared-mime-info aarch64 0:2.5.1-3.fc46 fedora 6.6 MiB spirv-tools-libs aarch64 0:2026.3-1.fc46 fedora 5.9 MiB svt-av1-libs aarch64 0:3.1.2-3.fc45 fedora 3.4 MiB tzdata noarch 0:2026c-2.fc46 fedora 1.2 MiB vim-filesystem noarch 2:9.2.1129-1.fc46 fedora 40.0 B vulkan-headers noarch 0:1.4.357.0-1.fc46 fedora 39.7 MiB vulkan-loader aarch64 0:1.4.357.0-1.fc46 fedora 678.5 KiB vulkan-loader-devel aarch64 0:1.4.357.0-1.fc46 fedora 8.0 KiB xcb-util aarch64 0:0.4.1-10.fc45 fedora 70.2 KiB xcb-util-image aarch64 0:0.4.1-10.fc45 fedora 70.1 KiB xcb-util-keysyms aarch64 0:0.4.1-10.fc45 fedora 68.5 KiB xcb-util-renderutil aarch64 0:0.3.10-10.fc45 fedora 72.3 KiB xcb-util-wm aarch64 0:0.4.2-10.fc45 fedora 137.1 KiB xkeyboard-config noarch 0:2.48-4.fc45 fedora 6.4 MiB xml-common noarch 0:0.6.3-70.fc46 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-3.fc45 fedora 1.8 MiB Transaction Summary: Installing: 247 packages Total size of inbound packages is 241 MiB. Need to download 241 MiB. After this operation, 900 MiB extra will be used (install 900 MiB, remove 0 B). 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MiB/s | 59.3 KiB | 00m00s [180/247] perl-Pod-Simple-1:3.48-527.fc 100% | 72.3 MiB/s | 222.0 KiB | 00m00s [181/247] perl-HTTP-Tiny-0:0.096-528.fc 100% | 9.5 MiB/s | 58.4 KiB | 00m00s [182/247] perl-Term-ANSIColor-0:5.01-52 100% | 11.6 MiB/s | 47.3 KiB | 00m00s [183/247] perl-Term-Cap-0:1.18-527.fc45 100% | 7.1 MiB/s | 21.7 KiB | 00m00s [184/247] hwdata-0:0.412-1.fc46.noarch 100% | 245.1 MiB/s | 1.7 MiB | 00m00s [185/247] libXau-devel-0:1.0.12-5.fc45. 100% | 2.3 MiB/s | 13.8 KiB | 00m00s [186/247] libwayland-client-0:1.26.0-3. 100% | 16.5 MiB/s | 33.8 KiB | 00m00s [187/247] libXxf86vm-0:1.1.6-5.fc45.aar 100% | 1.2 MiB/s | 17.5 KiB | 00m00s [188/247] abattis-cantarell-vf-fonts-0: 100% | 14.7 MiB/s | 120.3 KiB | 00m00s [189/247] mesa-dri-drivers-0:26.2.4-1.f 100% | 249.9 MiB/s | 10.2 MiB | 00m00s [190/247] google-noto-sans-vf-fonts-0:2 100% | 35.3 MiB/s | 613.9 KiB | 00m00s [191/247] libgudev-0:238-10.fc45.aarch6 100% | 8.3 MiB/s | 33.8 KiB | 00m00s [192/247] vim-filesystem-2:9.2.1129-1.f 100% | 15.2 MiB/s | 15.6 KiB | 00m00s [193/247] libwacom-data-0:2.20.0-1.fc46 100% | 56.9 MiB/s | 349.7 KiB | 00m00s [194/247] libXrender-0:0.9.12-5.fc45.aa 100% | 13.0 MiB/s | 26.7 KiB | 00m00s [195/247] lzo-0:2.10-17.fc45.aarch64 100% | 64.3 MiB/s | 65.9 KiB | 00m00s [196/247] pixman-0:0.46.2-4.fc45.aarch6 100% | 103.7 MiB/s | 212.4 KiB | 00m00s [197/247] libaom-0:3.13.3-3.fc45.aarch6 100% | 204.7 MiB/s | 1.6 MiB | 00m00s [198/247] libdav1d-0:1.5.4-1.fc46.aarch 100% | 46.2 MiB/s | 378.6 KiB | 00m00s [199/247] libopenjph-0:0.31.0-1.fc46.aa 100% | 116.7 MiB/s | 119.6 KiB | 00m00s [200/247] openjpeg-0:2.5.4-4.fc45.aarch 100% | 59.9 MiB/s | 183.9 KiB | 00m00s [201/247] noopenh264-0:2.6.0-5.fc45.aar 100% | 5.3 MiB/s | 21.8 KiB | 00m00s [202/247] rav1e-libs-0:0.8.1-5.fc46.aar 100% | 263.8 MiB/s | 810.2 KiB | 00m00s [203/247] svt-av1-libs-0:3.1.2-3.fc45.a 100% | 163.5 MiB/s | 1.3 MiB | 00m00s [204/247] highway-0:1.3.0-3.fc45.aarch6 100% | 33.5 MiB/s | 171.6 KiB | 00m00s [205/247] cairo-gobject-0:1.18.6-1.fc46 100% | 16.5 MiB/s | 16.9 KiB | 00m00s [206/247] pango-0:1.58.2-1.fc45.aarch64 100% | 174.6 MiB/s | 357.5 KiB | 00m00s [207/247] perl-IO-Socket-SSL-0:2.099-2. 100% | 76.9 MiB/s | 236.2 KiB | 00m00s [208/247] perl-Net-SSLeay-0:1.96-5.fc45 100% | 92.5 MiB/s | 378.8 KiB | 00m00s [209/247] perl-Time-HiRes-4:1.9780-527. 100% | 18.6 MiB/s | 57.2 KiB | 00m00s [210/247] perl-Pod-Escapes-1:1.07-527.f 100% | 9.5 MiB/s | 19.6 KiB | 00m00s [211/247] perl-Time-Local-2:1.350-527.f 100% | 11.1 MiB/s | 34.2 KiB | 00m00s [212/247] perl-Text-Tabs+Wrap-0:2024.00 100% | 10.5 MiB/s | 21.5 KiB | 00m00s [213/247] perl-if-0:0.61.000-527.fc45.n 100% | 6.7 MiB/s | 13.7 KiB | 00m00s [214/247] libxshmfence-0:1.3.2-9.fc45.a 100% | 13.1 MiB/s | 13.4 KiB | 00m00s [215/247] ncurses-0:6.6-3.fc45.aarch64 100% | 139.6 MiB/s | 428.8 KiB | 00m00s [216/247] libxcb-devel-0:1.17.0-8.fc45. 100% | 7.4 MiB/s | 1.5 MiB | 00m00s [217/247] lm_sensors-libs-0:3.6.0-25.fc 100% | 5.0 MiB/s | 40.6 KiB | 00m00s [218/247] mesa-filesystem-0:26.2.4-1.fc 100% | 1.6 MiB/s | 14.7 KiB | 00m00s [219/247] spirv-tools-libs-0:2026.3-1.f 100% | 138.2 MiB/s | 1.7 MiB | 00m00s [220/247] google-noto-fonts-common-0:20 100% | 1.5 MiB/s | 16.7 KiB | 00m00s [221/247] fribidi-0:1.0.17-2.fc46.aarch 100% | 19.9 MiB/s | 101.7 KiB | 00m00s [222/247] libXft-0:2.3.8-11.fc45.aarch6 100% | 9.9 MiB/s | 70.7 KiB | 00m00s [223/247] libthai-0:0.1.30-3.fc45.aarch 100% | 21.0 MiB/s | 214.8 KiB | 00m00s [224/247] perl-IO-Socket-IP-0:0.44-527. 100% | 3.4 MiB/s | 42.0 KiB | 00m00s [225/247] perl-URI-0:5.37-1.fc46.noarch 100% | 16.4 MiB/s | 151.0 KiB | 00m00s [226/247] llvm-filesystem-0:23.1.2-1.fc 100% | 2.6 MiB/s | 13.1 KiB | 00m00s [227/247] perl-AutoLoader-0:5.74-527.fc 100% | 2.0 MiB/s | 20.9 KiB | 00m00s [228/247] libdatrie-0:0.2.14-3.fc45.aar 100% | 7.8 MiB/s | 32.1 KiB | 00m00s [229/247] perl-Data-Dumper-0:2.192-528. 100% | 6.7 MiB/s | 55.0 KiB | 00m00s [230/247] perl-MIME-Base32-0:1.303-26.f 100% | 2.2 MiB/s | 20.4 KiB | 00m00s [231/247] perl-Unicode-Normalize-0:1.32 100% | 7.8 MiB/s | 72.1 KiB | 00m00s [232/247] perl-libnet-0:3.15-528.fc45.n 100% | 12.5 MiB/s | 128.3 KiB | 00m00s [233/247] perl-B-0:1.92-527.fc45.aarch6 100% | 16.2 MiB/s | 182.1 KiB | 00m00s [234/247] llvm-libs-0:23.1.2-1.fc46.aar 100% | 287.6 MiB/s | 34.8 MiB | 00m00s [235/247] perl-Digest-MD5-0:2.59-527.fc 100% | 909.9 KiB/s | 35.5 KiB | 00m00s [236/247] perl-FileHandle-0:2.05-527.fc 100% | 446.7 KiB/s | 15.2 KiB | 00m00s [237/247] perl-Digest-0:1.20-527.fc45.n 100% | 12.1 MiB/s | 24.8 KiB | 00m00s [238/247] gcc-plugin-annobin-0:16.2.1-2 100% | 28.9 MiB/s | 59.2 KiB | 00m00s [239/247] annobin-plugin-gcc-0:13.32-1. 100% | 173.3 MiB/s | 710.0 KiB | 00m00s [240/247] annobin-docs-0:13.32-1.fc46.n 100% | 28.3 MiB/s | 87.1 KiB | 00m00s [241/247] pyproject-rpm-macros-0:1.23.2 100% | 26.8 MiB/s | 54.8 KiB | 00m00s [242/247] python-rpm-macros-0:3.15-2.fc 100% | 9.7 MiB/s | 19.8 KiB | 00m00s [243/247] python3-rpm-generators-0:14-3 100% | 14.1 MiB/s | 28.8 KiB | 00m00s [244/247] python3-rpm-macros-0:3.15-2.f 100% | 4.0 MiB/s | 12.2 KiB | 00m00s [245/247] cmake-rpm-macros-0:4.3.0-5.fc 100% | 6.7 MiB/s | 13.7 KiB | 00m00s [246/247] python3-packaging-0:26.3-1.fc 100% | 71.7 MiB/s | 293.6 KiB | 00m00s [247/247] ninja-build-0:1.13.2-6.fc45.a 100% | 44.8 MiB/s | 183.7 KiB | 00m00s -------------------------------------------------------------------------------- [247/247] Total 100% | 239.9 MiB/s | 240.6 MiB | 00m01s Running transaction [ 1/249] Verify package files 100% | 320.0 B/s | 247.0 B | 00m01s [ 2/249] Prepare transaction 100% | 1.2 KiB/s | 247.0 B | 00m00s [ 3/249] Installing glib2-0:2.90.0-1.f 100% | 223.1 MiB/s | 15.8 MiB | 00m00s [ 4/249] Installing cmake-filesystem-0 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 5/249] Installing expat-0:2.8.3-1.fc 100% | 15.5 MiB/s | 380.4 KiB | 00m00s [ 6/249] Installing libX11-xcb-0:1.8.1 100% | 66.1 MiB/s | 67.7 KiB | 00m00s [ 7/249] Installing libglvnd-1:1.7.0-1 100% | 443.4 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MiB/s | 9.6 MiB | 00m00s Complete! Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1791072000 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-8.fc46.src.rpm Updating and loading repositories: fedora 100% | 220.7 KiB/s | 9.3 KiB | 00m00s Copr repository 100% | 170.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "libappstream-glib-0.8.4-1.fc45.aarch64" is already installed. Package "desktop-file-utils-0.28-8.fc45.aarch64" is already installed. Package "eigen3-devel-5.0.1-4.fc45.noarch" is already installed. Package "fftw-devel-3.3.10-18.fc45.aarch64" is already installed. Package "gcc-c++-16.2.1-2.fc46.1.aarch64" is already installed. Package "git-2.56.0-1.fc46.aarch64" is already installed. Package "libpng-devel-2:1.6.58-2.fc45.aarch64" is already installed. Package "libtiff-devel-4.7.2-2.fc45.aarch64" is already installed. Package "mesa-libGL-devel-26.2.4-1.fc46.aarch64" is already installed. Package "mesa-libGLU-devel-9.0.3-9.fc45.aarch64" is already installed. Package "python3-3.15.0~rc3-2.fc46.aarch64" is already installed. Package "python3-devel-3.15.0~rc3-2.fc46.aarch64" is already installed. Package "qt5-qtbase-devel-5.15.18-5.fc45.aarch64" is already installed. Package "qt5-qtsvg-devel-5.15.18-3.fc45.aarch64" is already installed. Package "zlib-ng-compat-devel-2.3.3-6.fc45.aarch64" is already installed. Nothing to do. Finish: build setup for mrtrix3-3.0.8-8.fc46.src.rpm Start: rpmbuild mrtrix3-3.0.8-8.fc46.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1791072000 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.GlJ9OG Creating(rpmbuild.env): /builddir/build/BUILD/mrtrix3-3.0.8-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/mrtrix3-3.0.8-build" RPM_OPT_FLAGS="-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="aarch64" RPM_OS="linux" RPM_BUILD_NCPUS="1" RPM_SPECPARTS_DIR="/builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="mrtrix3" RPM_PACKAGE_VERSION="3.0.8" RPM_PACKAGE_RELEASE="8.fc46" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zMYhKv + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar xf /builddir/build/SOURCES/eigen-3.4.0.tar.gz + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IEZYqV + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + unset ARCH + export NUMBER_OF_PROCESSORS=1 + NUMBER_OF_PROCESSORS=1 + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + export 'EIGEN_CFLAGS=-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + EIGEN_CFLAGS='-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + ./configure MRtrix build type requested: release version Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: Header: 1.6.58; library: 1.6.58 Checking for FFTW library: fftw-3.3.10-neon Checking for Qt moc: /usr/bin/moc-qt5 (version 5.15.18) Checking for Qt qmake: /usr/bin/qmake-qt5 (version 5.15.18) Checking for Qt rcc: /usr/bin/rcc-qt5 (version 5.15.18) Checking for Qt: 5.15.18 writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/548) [CC] tmp/cmd/warpinvert.o ( 2/548) [CC] tmp/src/exec_version.o ( 3/548) [CC] tmp/core/file/nifti_utils.o ( 4/548) [CC] tmp/core/image_io/fetch_store.o ( 5/548) [CC] tmp/core/formats/ram.o ( 6/548) [CC] tmp/core/math/SH.o ( 7/548) [CC] tmp/core/axes.o ( 8/548) [CC] tmp/core/stride.o ( 9/548) [CC] tmp/core/file/ofstream.o ( 10/548) [CC] tmp/core/metadata/bids.o ( 11/548) [CC] tmp/core/file/tiff.o ( 12/548) [CC] tmp/core/file/dicom/patient.o ( 13/548) [CC] tmp/core/file/dicom/mapper.o ( 14/548) [CC] tmp/core/file/dicom/series.o ( 15/548) [CC] tmp/core/formats/tiff.o ( 16/548) [CC] tmp/core/version.o ( 17/548) [CC] tmp/core/file/dicom/image.o ( 18/548) [CC] tmp/core/dwi/shells.o ( 19/548) [CC] tmp/core/formats/pipe.o ( 20/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 21/548) [CC] tmp/core/image_io/default.o ( 22/548) [CC] tmp/core/stats.o ( 23/548) [CC] tmp/core/datatype.o ( 24/548) [CC] tmp/core/file/dicom/select_cmdline.o ( 25/548) [CC] tmp/core/file/mmap.o ( 26/548) [CC] tmp/core/formats/mgh.o ( 27/548) [CC] tmp/core/formats/list.o ( 28/548) [CC] tmp/core/math/zstatistic.o ( 29/548) [CC] tmp/core/file/key_value.o ( 30/548) [CC] tmp/core/algo/histogram.o ( 31/548) [CC] tmp/core/file/dicom/quick_scan.o ( 32/548) [CC] tmp/core/math/stats/glm.o ( 33/548) [CC] tmp/core/thread.o ( 34/548) [CC] tmp/core/math/stats/fwe.o ( 35/548) [CC] tmp/core/file/mgh.o ( 36/548) [CC] tmp/core/image_io/variable_scaling.o ( 37/548) [CC] tmp/core/metadata/phase_encoding.o ( 38/548) [CC] tmp/core/formats/par.o ( 39/548) [CC] tmp/core/formats/mrtrix_gz.o ( 40/548) [CC] tmp/core/image_io/mosaic.o ( 41/548) [CC] tmp/core/image_io/tiff.o ( 42/548) [CC] tmp/core/math/stats/shuffle.o ( 43/548) [CC] tmp/core/image_io/ram.o ( 44/548) [CC] tmp/core/file/png.o ( 45/548) [CC] tmp/core/math/bessel.o ( 46/548) [CC] tmp/core/file/dicom/dict.o ( 47/548) [CC] tmp/core/adapter/reslice.o ( 48/548) [CC] tmp/core/image_io/gz.o ( 49/548) [CC] tmp/core/math/betainc.o ( 50/548) [CC] tmp/core/math/erfinv.o ( 51/548) [CC] tmp/core/formats/mgz.o ( 52/548) [CC] tmp/core/file/dicom/element.o ( 53/548) [CC] tmp/core/math/average_space.o ( 54/548) [CC] tmp/core/formats/nifti2.o ( 55/548) [CC] tmp/core/formats/xds.o ( 56/548) [CC] tmp/core/progressbar.o ( 57/548) [CC] tmp/core/file/dicom/tree.o ( 58/548) [CC] tmp/core/header.o ( 59/548) [CC] tmp/core/image_io/pipe.o ( 60/548) [CC] tmp/core/app.o ( 61/548) [CC] tmp/core/image_io/png.o ( 62/548) [CC] tmp/core/formats/dicom.o ( 63/548) [CC] tmp/core/image_io/sparse.o ( 64/548) [CC] tmp/core/formats/mrtrix_sparse_legacy.o ( 65/548) [CC] tmp/core/formats/png.o ( 66/548) [CC] tmp/core/formats/nifti1.o ( 67/548) [CC] tmp/core/image_io/base.o ( 68/548) [CC] tmp/core/formats/nifti2_gz.o ( 69/548) [CC] tmp/core/file/dicom/study.o ( 70/548) [CC] tmp/core/image_io/scratch.o ( 71/548) [CC] tmp/core/image_io/null.o ( 72/548) [CC] tmp/core/file/name_parser.o ( 73/548) [CC] tmp/core/mrtrix.o ( 74/548) [CC] tmp/core/dwi/gradient.o ( 75/548) [CC] tmp/core/exception.o ( 76/548) [CC] tmp/core/math/stats/import.o ( 77/548) [CC] tmp/core/formats/mrtrix.o ( 78/548) [CC] tmp/core/formats/nifti1_gz.o ( 79/548) [CC] tmp/core/metadata/slice_encoding.o ( 80/548) [CC] tmp/core/misc/bitset.o ( 81/548) [CC] tmp/core/signal_handler.o ( 82/548) [CC] tmp/core/formats/mri.o ( 83/548) [CC] tmp/core/file/config.o ( 84/548) [CC] tmp/core/formats/mrtrix_utils.o ( 85/548) [CC] tmp/core/filter/connected_components.o ( 86/548) [LD] lib/libmrtrix.so ( 87/548) [LB] bin/warpinvert ( 88/548) [CC] tmp/cmd/warpinit.o ( 89/548) [LB] bin/warpinit ( 90/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ ( 91/548) [LB] bin/warpcorrect ( 92/548) [CC] tmp/cmd/warpconvert.o ( 93/548) [LB] bin/warpconvert ( 94/548) [CC] tmp/cmd/warp2metric.o ( 95/548) [LB] bin/warp2metric ( 96/548) [CC] tmp/cmd/voxel2mesh.o ( 97/548) [CC] tmp/src/surface/polygon.o ( 98/548) [CC] tmp/src/surface/freesurfer.o ( 99/548) [CC] tmp/src/connectome/connectome.o (100/548) [CC] tmp/src/surface/scalar.o (101/548) [CC] tmp/src/connectome/lut.o (102/548) [CC] tmp/src/surface/mesh.o (103/548) [LB] bin/voxel2mesh (104/548) [CC] tmp/cmd/voxel2fixel.o (105/548) [LB] bin/voxel2fixel (106/548) [CC] tmp/cmd/vectorstats.o (107/548) [CC] tmp/src/stats/permtest.o (108/548) [LB] bin/vectorstats (109/548) [CC] tmp/cmd/tsfvalidate.o (110/548) [CC] tmp/src/dwi/tractography/roi.o (111/548) [CC] tmp/src/dwi/tractography/properties.o (112/548) [CC] tmp/src/dwi/tractography/file_base.o (113/548) [CC] tmp/src/dwi/tractography/rng.o (114/548) [CC] tmp/src/dwi/tractography/seeding/list.o (115/548) [LB] bin/tsfvalidate (116/548) [CC] tmp/cmd/tsfthreshold.o (117/548) [LB] bin/tsfthreshold (118/548) [CC] tmp/cmd/tsfsmooth.o (119/548) [LB] bin/tsfsmooth (120/548) [CC] tmp/cmd/tsfmult.o (121/548) [LB] bin/tsfmult (122/548) [CC] tmp/cmd/tsfinfo.o (123/548) [LB] bin/tsfinfo (124/548) [CC] tmp/cmd/tsfdivide.o (125/548) [LB] bin/tsfdivide (126/548) [CC] tmp/cmd/transformconvert.o (127/548) [LB] bin/transformconvert (128/548) [CC] tmp/cmd/transformcompose.o (129/548) [LB] bin/transformcompose (130/548) [CC] tmp/cmd/transformcalc.o (131/548) [LB] bin/transformcalc (132/548) [CC] tmp/cmd/tensor2metric.o (133/548) [LB] bin/tensor2metric (134/548) [CC] tmp/cmd/tcktransform.o (135/548) [LB] bin/tcktransform (136/548) [CC] tmp/cmd/tckstats.o (137/548) [CC] tmp/src/dwi/tractography/weights.o (138/548) [LB] bin/tckstats (139/548) [CC] tmp/src/dwi/fmls.o (140/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (141/548) [CC] tmp/src/dwi/tractography/resampling/arc.o (142/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (143/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o (144/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (145/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (146/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (147/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o (148/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (149/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (150/548) [CC] tmp/src/dwi/directions/set.o (151/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (152/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (153/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (154/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o (155/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (156/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (157/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (158/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (159/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o (160/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (161/548) [CC] tmp/src/dwi/directions/mask.o (162/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (163/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o (164/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (165/548) [CC] tmp/src/dwi/tractography/ACT/act.o (166/548) [CC] tmp/src/dwi/directions/predefined.o (167/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (168/548) [LB] bin/tcksift2 (169/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (170/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (171/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (172/548) [LB] bin/tcksift (173/548) [CC] tmp/cmd/tcksample.o (174/548) [LB] bin/tcksample (175/548) [CC] tmp/cmd/tckresample.o (176/548) [LB] bin/tckresample (177/548) [CC] tmp/src/dwi/tractography/mapping/writer.o (178/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (179/548) [CC] tmp/cmd/tckmap.o (180/548) [LB] bin/tckmap (181/548) [CC] tmp/cmd/tckinfo.o (182/548) [LB] bin/tckinfo (183/548) [CC] tmp/cmd/tckglobal.o (184/548) [CC] tmp/src/dwi/tractography/GT/particle.o (185/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (186/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (187/548) [CC] tmp/src/dwi/tractography/GT/gt.o (188/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (189/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (190/548) [LB] bin/tckglobal (191/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o (192/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (193/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (194/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (195/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (196/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (197/548) [CC] tmp/src/dwi/tractography/tracking/shared.o (198/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (199/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (200/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2217[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (201/548) [CC] tmp/src/dwi/tractography/tracking/method.o (202/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o (203/548) [CC] tmp/src/dwi/tractography/seeding/basic.o (204/548) [LB] bin/tckgen (205/548) [CC] tmp/src/dwi/tractography/editing/worker.o (206/548) [CC] tmp/cmd/tckedit.o (207/548) [CC] tmp/src/dwi/tractography/editing/receiver.o (208/548) [CC] tmp/src/dwi/tractography/editing/editing.o (209/548) [LB] bin/tckedit (210/548) [CC] tmp/cmd/tckdfc.o (211/548) [LB] bin/tckdfc (212/548) [CC] tmp/cmd/tckconvert.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckconvert.cpp -o tmp/cmd/tckconvert.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/ConfigureVectorization.h:392, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:22, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tckconvert.cpp:19: In function ‘float32x2_t vld1_f32(const float32_t*)’, inlined from ‘Packet Eigen::internal::ploadu(const typename unpacket_traits::type*) [with Packet = __Float32x2_t]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/arch/NEON/PacketMath.h:1710:45, inlined from ‘Packet Eigen::internal::ploadt(const typename unpacket_traits::type*) [with Packet = __Float32x2_t; int Alignment = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/GenericPacketMath.h:969:26, inlined from ‘PacketType Eigen::internal::evaluator >::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:238:42, inlined from ‘PacketType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::packet(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; UnaryOp = Eigen::internal::scalar_abs2_op; ArgType = const Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:596:81, inlined from ‘PacketType Eigen::internal::redux_evaluator<_XprType>::packetByOuterInner(Eigen::Index, Eigen::Index) const [with int LoadMode = 0; PacketType = __Float32x2_t; _XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:386:54, inlined from ‘static PacketType Eigen::internal::redux_vec_unroller::run(const Evaluator&, const Func&) [with PacketType = __Float32x2_t; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:177:66, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp, const Eigen::Matrix >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Matrix > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:344:115, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::Matrix >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘typename Eigen::NumTraits::Scalar>::Real Eigen::MatrixBase::squaredNorm() const [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Dot.h:98:46, inlined from ‘void Eigen::MatrixBase::normalize() [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Dot.h:147:29, inlined from ‘void PLYWriter::computeNormals(const MR::DWI::Tractography::Streamline&, MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:411:23, inlined from ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’ at cmd/tckconvert.cpp:485:27: /usr/lib/gcc/aarch64-redhat-linux/16/include/arm_neon.h:11978:36: warning: ‘*(__Float32x2_t*)((char*)&normal + offsetof(Eigen::Vector3f, Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[0]))’ may be used uninitialized [-Wmaybe-uninitialized] 11978 | return __builtin_aarch64_ld1v2sf ((const __builtin_aarch64_simd_sf *) __a); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/tckconvert.cpp: In member function ‘virtual bool PLYWriter::operator()(const MR::DWI::Tractography::Streamline&)’: cmd/tckconvert.cpp:396:50: note: ‘normal’ declared here 396 | Eigen::Vector3f sPrev, sNext, pt1, pt2, n, normal; | ^~~~~~ (213/548) [LB] bin/tckconvert (214/548) [CC] tmp/cmd/tck2fixel.o (215/548) [LB] bin/tck2fixel (216/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o (217/548) [CC] tmp/cmd/tck2connectome.o (218/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o (219/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (220/548) [LB] bin/tck2connectome (221/548) [CC] tmp/src/gui/dialog/dicom.o (222/548) [CC] tmp/src/gui/opengl/lighting.o (223/548) [CC] tmp/src/gui/color_button.o (224/548) [CC] tmp/src/gui/dialog/file.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (225/548) [RCC] tmp/src/gui/shview/icons.cpp (226/548) [CC] tmp/src/gui/shview/icons.o (227/548) [CC] tmp/src/gui/dialog/report_exception.o (228/548) [CC] tmp/src/gui/opengl/shader.o (229/548) [CC] tmp/src/gui/dialog/dialog.o (230/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o (231/548) [CC] tmp/src/gui/shview/render_window.o (232/548) [CC] tmp/src/gui/dwi/renderer.o (233/548) [CC] tmp/src/gui/dwi/render_frame.o (234/548) [MOC] tmp/src/gui/color_button_moc.cpp (235/548) [CC] tmp/src/gui/color_button_moc.o (236/548) [CC] tmp/src/gui/opengl/font.o (237/548) [CC] tmp/src/gui/gui.o (238/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (239/548) [CC] tmp/src/gui/dwi/render_frame_moc.o (240/548) [CC] tmp/src/gui/opengl/gl.o (241/548) [CC] tmp/src/gui/dialog/list.o (242/548) [CC] tmp/src/gui/lighting_dock.o (243/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (244/548) [CC] tmp/src/gui/opengl/lighting_moc.o (245/548) [CC] tmp/src/gui/crosshair.o (246/548) [CC] tmp/cmd/shview.o (247/548) [CC] tmp/src/gui/dialog/progress.o (248/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp (249/548) [CC] tmp/src/gui/lighting_dock_moc.o (250/548) [CC] tmp/src/gui/projection.o (251/548) [CC] tmp/src/gui/shapes/halfsphere.o (252/548) [CC] tmp/src/gui/shview/file_open.o (253/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp (254/548) [CC] tmp/src/gui/shview/render_window_moc.o (255/548) [LB] bin/shview (256/548) [CC] tmp/cmd/shconv.o (257/548) [LB] bin/shconv (258/548) [CC] tmp/cmd/shbasis.o (259/548) [LB] bin/shbasis (260/548) [CC] tmp/cmd/sh2response.o (261/548) [LB] bin/sh2response (262/548) [CC] tmp/cmd/sh2power.o (263/548) [LB] bin/sh2power (264/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.713[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (265/548) [LB] bin/sh2peaks (266/548) [CC] tmp/src/dwi/directions/file.o (267/548) [CC] tmp/cmd/sh2amp.o (268/548) [LB] bin/sh2amp (269/548) [CC] tmp/cmd/peaks2fixel.o (270/548) [LB] bin/peaks2fixel (271/548) [CC] tmp/cmd/peaks2amp.o (272/548) [LB] bin/peaks2amp (273/548) [CC] tmp/cmd/mtnormalise.o (274/548) [LB] bin/mtnormalise (275/548) [CC] tmp/src/gui/mrview/tool/overlay.o (276/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (277/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o (278/548) [CC] tmp/src/gui/mrview/tool/transform.o (279/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp (280/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o (281/548) [CC] tmp/src/gui/mrview/colourmap_button.o (282/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (283/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (284/548) [CC] tmp/src/gui/mrview/volume.o (285/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (286/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (287/548) [CC] tmp/src/gui/mrview/mode/volume.o (288/548) [CC] tmp/src/gui/mrview/displayable.o (289/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (290/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (291/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (292/548) [CC] tmp/src/gui/dialog/image_properties_moc.o (293/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (294/548) [CC] tmp/src/gui/mrview/displayable_moc.o (295/548) [CC] tmp/src/gui/mrview/combo_box_error.o (296/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (297/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (298/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (299/548) [CC] tmp/src/gui/mrview/mode/lightbox.o (300/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (301/548) [CC] tmp/src/colourmap.o (302/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (303/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (304/548) [CC] tmp/src/gui/shapes/cylinder.o (305/548) [CC] tmp/src/surface/mesh_multi.o (306/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (307/548) [CC] tmp/src/gui/shapes/sphere.o (308/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (309/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (310/548) [CC] tmp/src/gui/mrview/adjust_button.o (311/548) [CC] tmp/src/gui/mrview/colourbars.o (312/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (313/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (314/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o (315/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (316/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (317/548) [CC] tmp/src/gui/shapes/cube.o (318/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (319/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (320/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (321/548) [CC] tmp/src/gui/mrview/mode/slice.o (322/548) [CC] tmp/src/gui/mrview/file_open.o (323/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o (324/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (325/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (326/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (327/548) [CC] tmp/src/gui/mrview/sync/client.o (328/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o (329/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (330/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (331/548) [CC] tmp/src/gui/mrview/mode/base.o (332/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (333/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (334/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (335/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (336/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o (337/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o (338/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (339/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (340/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (341/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o (342/548) [CC] tmp/src/gui/mrview/gui_image.o (343/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (344/548) [CC] tmp/cmd/mrview.o (345/548) [CC] tmp/src/gui/cursor.o (346/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (347/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (348/548) [RCC] tmp/src/gui/mrview/icons.cpp (349/548) [CC] tmp/src/gui/mrview/icons.o (350/548) [CC] tmp/src/gui/mrview/sync/processlock.o (351/548) [CC] tmp/src/gui/mrview/tool/base.o (352/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (353/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (354/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o (355/548) [CC] tmp/src/gui/dialog/opengl.o (356/548) [CC] tmp/src/gui/dialog/image_properties.o (357/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o (358/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (359/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp (360/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o (361/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (362/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (363/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (364/548) [MOC] tmp/src/gui/mrview/window_moc.cpp (365/548) [CC] tmp/src/gui/mrview/window_moc.o (366/548) [CC] tmp/src/gui/mrview/mode/ortho.o (367/548) [CC] tmp/src/gui/mrview/tool/view.o (368/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (369/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (370/548) [CC] tmp/src/gui/mrview/tool/odf/model.o (371/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (372/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (373/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (374/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (375/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (376/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (377/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (378/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (379/548) [CC] tmp/src/gui/mrview/spin_box_moc.o (380/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (381/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (382/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (383/548) [CC] tmp/src/gui/mrview/tool/view_moc.o (384/548) [CC] tmp/src/gui/mrview/window.o (385/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o (386/548) [CC] tmp/src/gui/mrview/tool/odf/item.o (387/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (388/548) [LB] bin/mrview (389/548) [CC] tmp/cmd/mrtransform.o (390/548) [CC] tmp/src/registration/multi_contrast.o (391/548) [LB] bin/mrtransform (392/548) [CC] tmp/cmd/mrthreshold.o (393/548) [LB] bin/mrthreshold (394/548) [CC] tmp/cmd/mrstats.o (395/548) [LB] bin/mrstats (396/548) [CC] tmp/cmd/mrregister.o (397/548) [CC] tmp/src/registration/transform/convergence_check.o (398/548) [CC] tmp/src/registration/transform/affine.o (399/548) [CC] tmp/src/registration/transform/rigid.o (400/548) [CC] tmp/src/registration/linear.o (401/548) [CC] tmp/src/registration/nonlinear.o (402/548) [CC] tmp/src/registration/transform/initialiser_helpers.o (403/548) [CC] tmp/src/registration/transform/initialiser.o (404/548) [LB] bin/mrregister (405/548) [CC] tmp/cmd/mrmetric.o (406/548) [LB] bin/mrmetric (407/548) [CC] tmp/cmd/mrmath.o (408/548) [LB] bin/mrmath (409/548) [CC] tmp/cmd/mrinfo.o (410/548) [LB] bin/mrinfo (411/548) [CC] tmp/cmd/mrhistogram.o (412/548) [LB] bin/mrhistogram (413/548) [CC] tmp/cmd/mrhistmatch.o (414/548) [LB] bin/mrhistmatch (415/548) [CC] tmp/cmd/mrgrid.o (416/548) [LB] bin/mrgrid (417/548) [CC] tmp/cmd/mrfilter.o (418/548) [LB] bin/mrfilter (419/548) [CC] tmp/cmd/mredit.o (420/548) [LB] bin/mredit (421/548) [CC] tmp/cmd/mrdump.o (422/548) [LB] bin/mrdump (423/548) [CC] tmp/cmd/mrdegibbs.o (424/548) [LB] bin/mrdegibbs (425/548) [CC] tmp/cmd/mrconvert.o (426/548) [LB] bin/mrconvert (427/548) [CC] tmp/cmd/mrcolour.o (428/548) [LB] bin/mrcolour (429/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (430/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (431/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (432/548) [LB] bin/mrclusterstats (433/548) [CC] tmp/cmd/mrcheckerboardmask.o (434/548) [LB] bin/mrcheckerboardmask (435/548) [CC] tmp/cmd/mrcentroid.o (436/548) [LB] bin/mrcentroid (437/548) [CC] tmp/cmd/mrcat.o (438/548) [LB] bin/mrcat (439/548) [CC] tmp/cmd/mrcalc.o (440/548) [LB] bin/mrcalc (441/548) [CC] tmp/cmd/mraverageheader.o (442/548) [LB] bin/mraverageheader (443/548) [CC] tmp/src/surface/filter/base.o (444/548) [CC] tmp/cmd/meshfilter.o (445/548) [CC] tmp/src/surface/filter/smooth.o (446/548) [LB] bin/meshfilter (447/548) [CC] tmp/src/surface/filter/vertex_transform.o (448/548) [CC] tmp/cmd/meshconvert.o (449/548) [LB] bin/meshconvert (450/548) [CC] tmp/cmd/mesh2voxel.o (451/548) [CC] tmp/src/surface/algo/mesh2image.o (452/548) [LB] bin/mesh2voxel (453/548) [CC] tmp/cmd/maskfilter.o (454/548) [LB] bin/maskfilter (455/548) [CC] tmp/cmd/maskdump.o (456/548) [LB] bin/maskdump (457/548) [CC] tmp/cmd/labelstats.o (458/548) [LB] bin/labelstats (459/548) [CC] tmp/cmd/labelconvert.o (460/548) [LB] bin/labelconvert (461/548) [CC] tmp/cmd/label2mesh.o (462/548) [LB] bin/label2mesh (463/548) [CC] tmp/cmd/label2colour.o (464/548) [LB] bin/label2colour (465/548) [CC] tmp/cmd/fod2fixel.o (466/548) [LB] bin/fod2fixel (467/548) [CC] tmp/cmd/fod2dec.o (468/548) [LB] bin/fod2dec (469/548) [CC] tmp/cmd/fixelreorient.o (470/548) [LB] bin/fixelreorient (471/548) [CC] tmp/src/fixel/filter/smooth.o (472/548) [CC] tmp/src/stats/cfe.o (473/548) [CC] tmp/cmd/fixelfilter.o (474/548) [CC] tmp/src/fixel/index_remapper.o (475/548) [CC] tmp/src/fixel/filter/connect.o (476/548) [CC] tmp/src/fixel/matrix.o (477/548) [LB] bin/fixelfilter (478/548) [CC] tmp/cmd/fixelcrop.o (479/548) [LB] bin/fixelcrop (480/548) [CC] tmp/cmd/fixelcorrespondence.o (481/548) [LB] bin/fixelcorrespondence (482/548) [CC] tmp/cmd/fixelconvert.o (483/548) [LB] bin/fixelconvert (484/548) [CC] tmp/cmd/fixelconnectivity.o (485/548) [LB] bin/fixelconnectivity (486/548) [CC] tmp/cmd/fixelcfestats.o (487/548) [LB] bin/fixelcfestats (488/548) [CC] tmp/cmd/fixel2voxel.o (489/548) [LB] bin/fixel2voxel (490/548) [CC] tmp/cmd/fixel2tsf.o (491/548) [LB] bin/fixel2tsf (492/548) [CC] tmp/cmd/fixel2sh.o (493/548) [LB] bin/fixel2sh (494/548) [CC] tmp/cmd/fixel2peaks.o (495/548) [LB] bin/fixel2peaks (496/548) [CC] tmp/cmd/dwiextract.o (497/548) [LB] bin/dwiextract (498/548) [CC] tmp/cmd/dwidenoise.o (499/548) [LB] bin/dwidenoise (500/548) [CC] tmp/cmd/dwi2tensor.o (501/548) [LB] bin/dwi2tensor (502/548) [CC] tmp/cmd/dwi2mask.o (503/548) [LB] bin/dwi2mask (504/548) [CC] tmp/cmd/dwi2fod.o (505/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o (506/548) [CC] tmp/src/dwi/sdeconv/csd.o (507/548) [LB] bin/dwi2fod (508/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:582, from /usr/include/c++/16/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (509/548) [LB] bin/dwi2adc (510/548) [CC] tmp/cmd/dirstat.o (511/548) [LB] bin/dirstat (512/548) [CC] tmp/cmd/dirsplit.o (513/548) [LB] bin/dirsplit (514/548) [CC] tmp/cmd/dirorder.o (515/548) [LB] bin/dirorder (516/548) [CC] tmp/cmd/dirmerge.o (517/548) [LB] bin/dirmerge (518/548) [CC] tmp/cmd/dirgen.o (519/548) [LB] bin/dirgen (520/548) [CC] tmp/cmd/dirflip.o (521/548) [LB] bin/dirflip (522/548) [CC] tmp/cmd/dcminfo.o (523/548) [LB] bin/dcminfo (524/548) [CC] tmp/cmd/dcmedit.o (525/548) [LB] bin/dcmedit (526/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (527/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/548) [LB] bin/connectomestats (529/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (530/548) [LB] bin/connectomeedit (531/548) [CC] tmp/src/dwi/tractography/connectome/extract.o (532/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (533/548) [CC] tmp/cmd/connectome2tck.o (534/548) [LB] bin/connectome2tck (535/548) [CC] tmp/cmd/amp2sh.o (536/548) [LB] bin/amp2sh (537/548) [CC] tmp/cmd/amp2response.o (538/548) [LB] bin/amp2response (539/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (540/548) [LB] bin/afdconnectivity (541/548) [CC] tmp/cmd/5ttedit.o (542/548) [LB] bin/5ttedit (543/548) [CC] tmp/cmd/5ttcheck.o (544/548) [LB] bin/5ttcheck (545/548) [CC] tmp/cmd/5tt2vis.o (546/548) [LB] bin/5tt2vis (547/548) [CC] tmp/cmd/5tt2gmwmi.o (548/548) [LB] bin/5tt2gmwmi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.a56YrQ + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + binary_name=mrview + '[' mrview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + binary_name=shview + '[' shview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + grep -q python + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise' Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + grep -q python + desktop-file-install --dir=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications --set-key=Version --set-value=1.0 --remove-key=Value --set-key=Keywords '--set-value=MRI;diffusion;tractography;DWI;neuroimaging;' --set-key=Categories '--set-value=Science;MedicalSoftware;' --set-key=MimeType '--set-value=application/x-mrtrix;application/x-mrtrix-gz;application/x-mrtrix-tracks;application/x-nifti;application/x-mgh;' mrview.desktop + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/16x16/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/32x32/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/48x48/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/64x64/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/128x128/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/application-x-mrtrix.png + cat + install -Dpm0644 mrtrix3-mime.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/mime/packages/mrtrix3.xml + install -Dpm 0644 /builddir/build/SOURCES/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + appstream-util validate-relax --nonet /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml: OK + /usr/bin/find-debuginfo -j1 --strict-build-id -m -i --build-id-seed 3.0.8-8.fc46 --unique-debug-suffix -3.0.8-8.fc46.aarch64 --unique-debug-src-base mrtrix3-3.0.8-8.fc46.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 113 files DWARF-compressing 113 files sepdebugcrcfix: Updated 113 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-8.fc46.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-8.fc46.aarch64/eigen-3.4.0/Eigen/src/Core/util/Meta.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-8.fc46.aarch64/eigen-3.4.0/Eigen/src/Core/util/BlasUtil.h is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 153 directories and 1397 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr Scanned 152 directories and 1397 files, considered 1267 files, read 77 files, linked 3 files, 0 errors sum of sizes of linked files: 0 bytes Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.OKn4us + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + desktop-file-validate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications/mrview.desktop + test -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-8.fc46.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NMtE4X + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.QRTbeg + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: application() application(mrview.desktop) bundled(eigen3) = 3.4.0 libmrtrix.so()(64bit) metainfo() metainfo(mrview.metainfo.xml) mimehandler(application/x-mgh) mimehandler(application/x-mrtrix) mimehandler(application/x-mrtrix-gz) mimehandler(application/x-mrtrix-tracks) mimehandler(application/x-nifti) mrtrix3 = 3.0.8-8.fc46 mrtrix3(aarch-64) = 3.0.8-8.fc46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libGL.so.1()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmrtrix.so()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Recommends: neuro-mime-types Processing files: mrtrix3-debugsource-3.0.8-8.fc46.aarch64 Provides: mrtrix3-debugsource = 3.0.8-8.fc46 mrtrix3-debugsource(aarch-64) = 3.0.8-8.fc46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-8.fc46.aarch64 Provides: debuginfo(build-id) = 00230cbd9b5d2c37bd4c859b7e0fa3e7b823d919 debuginfo(build-id) = 004b9f6d1b9c8ca7a7d72d3f11aa8d51b800db30 debuginfo(build-id) = 03f99be4ae65cf10cca5a03d7a409c9797fd3748 debuginfo(build-id) = 0fb7c001b2ab67723c3f2cc9f49f35bddec7db96 debuginfo(build-id) = 0fbf563eea0d9d687f6051c1c22559e941d566ee debuginfo(build-id) = 1606ad342798e977563beea6d702caf69cb243a2 debuginfo(build-id) = 1b228b0482fbdf93a716fb01d89bbd60568ded36 debuginfo(build-id) = 1d80a94079820885a3286193b9c9beb22767f460 debuginfo(build-id) = 1e7c7538f72f23d4558e8d686c8987b54e343099 debuginfo(build-id) = 1fe80efde355d72201f920a56f7a1fbfddc321d0 debuginfo(build-id) = 21b33d87ec6c24627f2f51525887366fd23c82b0 debuginfo(build-id) = 22b316008f4abf3ee91537664081f7dd55691b29 debuginfo(build-id) = 25f5e6e64fd70d888b3401f3ab9c38f6e4506c88 debuginfo(build-id) = 2a0c6845318f7c5e8eb1ed76adfd9d91bc03ef8d debuginfo(build-id) = 2b47085184bff47aeabd987ed7a40c869082b332 debuginfo(build-id) = 2bb21173dbdf87817e92a03e14501ce184585e56 debuginfo(build-id) = 2dc46683eefcf4ab6364e7dbcb81ee892a940fd9 debuginfo(build-id) = 2fa640792be12921712c0115335eb8622ff1e701 debuginfo(build-id) = 30384834b4fd68ab29c9919c430f25887fddc282 debuginfo(build-id) = 3357f82b13b1928222b34bc164bf5a2a56e99995 debuginfo(build-id) = 3dfb62ccc4a5a150c318999bf97d8c7c53691df5 debuginfo(build-id) = 3e21aea316d2255c3aa494cc6708297884290562 debuginfo(build-id) = 4019c7df45b5000e2d89ab1a263b51e3c928b01c debuginfo(build-id) = 428767439ec037158cc4671393ed33d7ce62f640 debuginfo(build-id) = 44fc8e6d407d03d04b9a70b774b1a2e681ecbbbe debuginfo(build-id) = 4632542c22d3012a19f73fb7e6d07fb76237f82f debuginfo(build-id) = 4948165a321add5f0bd945ff586279b344ff0075 debuginfo(build-id) = 4bb99bc2d935e0b1d11c79df4dc303af53c26594 debuginfo(build-id) = 4cdc86ab33e63da4d3860230d59a83753e67b807 debuginfo(build-id) = 4da5937d7d0ae5a32492988661d5e517f7d60b75 debuginfo(build-id) = 4eaef32d152271be050871a30d844b6b6df1aa69 debuginfo(build-id) = 50886fd0f584c8298d1f007f08edec4ce3d4c360 debuginfo(build-id) = 5269666ea280a82271ab334ca362d628294e446f debuginfo(build-id) = 54ad2d689e74546cc7f1a138970e670decf9c848 debuginfo(build-id) = 5571276ffea4ff4c8b714fb7b9f09e655d364b3a debuginfo(build-id) = 589e3034d9d45849d7658984cb6c3d4ddd8c33f8 debuginfo(build-id) = 59021f7f263171608ce94586dc53d7a9ce5f056a debuginfo(build-id) = 5a4db9c3b901454d572100da62d7dc1d28fa3364 debuginfo(build-id) = 5a797044735b9adfb38146afa38af9a2f7f759e8 debuginfo(build-id) = 5acb523c79fb58328f795e1161d8cd34917a4a95 debuginfo(build-id) = 5c91564c9488edb3a594ae10f7d88c8cb086b161 debuginfo(build-id) = 5ef43d5a77a20b486f557136427f5ce62eceb7cb debuginfo(build-id) = 64da53807f6066134d084ee699187b47ddb22c62 debuginfo(build-id) = 68b0f12c6dc4cae148dbba97a10358eabdafb257 debuginfo(build-id) = 6ab79fc76f73ed431b8b64f77e44f152b65f2e41 debuginfo(build-id) = 6cc80637325a33ceae0149a0cddc19a879887c27 debuginfo(build-id) = 6d04cc1313f8bf557057a0d745d728ea1fb53f04 debuginfo(build-id) = 732892b451464c547d11082e5a301e7a59b129e7 debuginfo(build-id) = 76fdcb64f616e77b84ba7491600986682dacd43f debuginfo(build-id) = 78a3e88079998dcd56e940d9a85060f421a7888a debuginfo(build-id) = 7960e3d49279b449bbb07d3601c96b5ace9df44a debuginfo(build-id) = 79b76c1597f0b29b29364ca9f020df24613ddf14 debuginfo(build-id) = 7a896e5b8a969376e61a08f714428b2232b82da1 debuginfo(build-id) = 7be7102c816ebdbf43554036304c4d8b4c0154eb debuginfo(build-id) = 837eb9eebfcdecc326c7c78d8b0b48669de5b79e debuginfo(build-id) = 84842e03281577002b746c9a856df530b9f07004 debuginfo(build-id) = 85f8ffef646d7ab5246183058841de8bb98f9bff debuginfo(build-id) = 864a05fe3e850b8828d59f4c7997eb1918008002 debuginfo(build-id) = 8bf940c1a0a0e7a4f0e695d4e38ced4463068fe5 debuginfo(build-id) = 8dda3563c9a3d216ee0a86f249edc25f37878fc4 debuginfo(build-id) = 8ef68129dc9ecf2abf7afba6d58c0160157d107d debuginfo(build-id) = 920e94f311fcf8a34790518388d9587871d4c300 debuginfo(build-id) = 94b6e0d77ddb0573efb60abcdc71ce6a9a38c98f debuginfo(build-id) = 95a91124024e19b897372ec987185539e0620f0b debuginfo(build-id) = 9907d110d5e26c79c9b9b28393da67ec95475aa7 debuginfo(build-id) = 9d88c53608bcceefc5a3f349d09a5e7df0bee77d debuginfo(build-id) = 9ef3104b93c1b99336c54987f4c47126f564b501 debuginfo(build-id) = 9f71a18c798ed161ddc7610a47a2219a286234da debuginfo(build-id) = a10ae66b95a28f09945568e689daf2e2b7efda72 debuginfo(build-id) = a5196541d50a5c5e78dd2fbbb1cec5bd3532f69f debuginfo(build-id) = a6c0c75820c0d206639ce0b3ce1a0e94a9fbd975 debuginfo(build-id) = aa2d4f6f3f2f7676203944561006c5df2409c309 debuginfo(build-id) = b12c2e27bed8e1c82e0fcde7401f68ddd16fef24 debuginfo(build-id) = b359c9d3b2d6d77a4b19522e462cd8d454501208 debuginfo(build-id) = b3e55533d596948c68048ad4fa0b23432b04e7e8 debuginfo(build-id) = b6e043c5797515ca5af3961cfd6e17b8d687a49c debuginfo(build-id) = b789a0f3aef07d48f44c0714881201c2e40058c7 debuginfo(build-id) = b86dba0651c0b2f457e60f5be994749781da6f5c debuginfo(build-id) = b9a1a8b70789cc6f858d55b56a37545d2f8b3c37 debuginfo(build-id) = bc1f501f63e00fd8623ed30d92ef26a59959f2bb debuginfo(build-id) = bc8579367b99500b20ea0076a381585870e45db5 debuginfo(build-id) = bcbb019815887860b6572ec0ba5c57151150ae80 debuginfo(build-id) = c10230aa21b87a54824088abca6593f1a59bd7e4 debuginfo(build-id) = c14d75e478d957f4bbbc5707c3f84e95f9d0bae1 debuginfo(build-id) = c5e30c01efdf88c325c2b581dba96ce0cad385f9 debuginfo(build-id) = c8ba9fa28af04cfadf93d36c339f8cf98be8ffc3 debuginfo(build-id) = c94032fbd669408bb141a9fb338dc7c75a446219 debuginfo(build-id) = cb7c2039697a28bd8cc683cde958947336cdf898 debuginfo(build-id) = cdc132a67d68188b480f0cbb9fcbe8584ba6357c debuginfo(build-id) = cdd762724415f422d75df7dd6835e3afc5f0aa43 debuginfo(build-id) = cea6a129b4ab6e66fad7d7ee94ae039ebf4385b3 debuginfo(build-id) = d64a62c2ad04583f68b93a166d10b40338b747d0 debuginfo(build-id) = d6ab624f081e3ad5ed520feca666e65691be6ef3 debuginfo(build-id) = d7185279e1952468b7684fb8337894a075a540b3 debuginfo(build-id) = d9bc83a41f6c2260e28398e24b01a5f372aee6c6 debuginfo(build-id) = dceada51e946c65178e5a6a05644f9539aad50ee debuginfo(build-id) = dcf3d06c2689048be036551c62620aa51e5057b1 debuginfo(build-id) = de005210e37bf8cb30fa74278a28d2b0b8e579b2 debuginfo(build-id) = e354ee0949f3e6b84daaae41acb12a0363b80aac debuginfo(build-id) = e60b4c6f9f5996eafa5785c9520b5d2943f14a6a debuginfo(build-id) = e62c4be5d801413c6da63cdf57190c38d2dd90bf debuginfo(build-id) = e79493313691a90486c0b8cff6272fe0bc19cc94 debuginfo(build-id) = e981124c61192c4a92460addf185ab26544987d2 debuginfo(build-id) = eb5d3762f324ca2e445139d8ffcc85007f8fa9e1 debuginfo(build-id) = eff148e9ea6b6dce33604b1dde0214141351474e debuginfo(build-id) = f068b710fa65724c7836972664cd8942482bc65a debuginfo(build-id) = f28864528c0b9cf9fdb101f0ff3497b88fd69cf6 debuginfo(build-id) = f2a6200966aa62a6ef7fa10e5512517e2c514137 debuginfo(build-id) = f3d5284906667b245569850e2a8b536bf6436096 debuginfo(build-id) = f5ce974037ed75141d827843b4a482c1b30fd233 debuginfo(build-id) = f6754472ae66a11381ca96ddf5d6a34139f7a8dd debuginfo(build-id) = f832ae7838cf6469e3eea588a734734f76dbf40f debuginfo(build-id) = fcff41b5b9f71bca010aa5cc17f360aa1ea95320 libmrtrix.so-3.0.8-8.fc46.aarch64.debug()(64bit) mrtrix3-debuginfo = 3.0.8-8.fc46 mrtrix3-debuginfo(aarch-64) = 3.0.8-8.fc46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(aarch-64) = 3.0.8-8.fc46 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-8.fc46.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-8.fc46.aarch64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-8.fc46.aarch64.rpm RPM build warnings: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-8.fc46.src.rpm Finish: build phase for mrtrix3-3.0.8-8.fc46.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1791323007.267307/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-8.fc46.src.rpm) Config(child) 88 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "8.fc46", "arch": "aarch64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "8.fc46", "arch": "src" }, { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "8.fc46", "arch": "aarch64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "8.fc46", "arch": "aarch64" } ] } RPMResults finished