Warning: Permanently added '13.222.28.87' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11094420-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64


Version: 1.10
PID: 11869
Logging PID: 11871
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': False,
 'build_id': 11094420,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '95b38164db1c3cc33b439e77d060a95826821c83',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/cat-surface',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'cat-surface',
 'package_version': '1:1.0.28-1',
 'project_dirname': 'neurofedora',
 'project_name': 'neurofedora',
 'project_owner': 'mhough',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-rawhide-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None,
            'repo_gpgcheck': False}],
 'sandbox': 'mhough/neurofedora--mhough',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'mhough',
 'tags': [],
 'task_id': '11094420-fedora-rawhide-aarch64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/cat-surface /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/cat-surface', '/var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface'...

Running: git checkout 95b38164db1c3cc33b439e77d060a95826821c83 --

cmd: ['git', 'checkout', '95b38164db1c3cc33b439e77d060a95826821c83', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface
rc: 0
stdout: 
stderr: Note: switching to '95b38164db1c3cc33b439e77d060a95826821c83'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 95b3816 automatic import of cat-surface

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading CAT-Surface-1.0.28.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o CAT-Surface-1.0.28.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/cat-surface/CAT-Surface-1.0.28.tar.gz/md5/7c37904b2e2d03cda0b2574b213830ad/CAT-Surface-1.0.28.tar.gz
  % Total    % Received % Xferd  Average Speed  Time    Time    Time   Current
                                 Dload  Upload  Total   Spent   Left   Speed
100  6.06M 100  6.06M   0      0 169.3M      0                              0
INFO: Reading stdout from command: md5sum CAT-Surface-1.0.28.tar.gz

tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface/cat-surface.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791479665.296469 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface/cat-surface.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1791479665.296469 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface/cat-surface.spec)  Config(fedora-rawhide-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.9
INFO: Mock Version: 6.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791479665.296469/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-5332bd88-5599-4820-8e07-d812ec5e5d50
INFO: Checking that 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 image matches host's architecture
INFO: Copy content of container 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791479665.296469/root
INFO: mounting 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 with podman image mount
INFO: image 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 as /var/lib/containers/storage/overlay/02917baf66f4ae30e9fb848d36fec079cd0b6288e744d698c528a9215629ebfc/merged
INFO: umounting image 5a093df20430be387c41ef65bfb382893ec11c461d79664234c8a753ccf30144 (/var/lib/containers/storage/overlay/02917baf66f4ae30e9fb848d36fec079cd0b6288e744d698c528a9215629ebfc/merged) with podman image umount
INFO: Removing image mock-bootstrap-5332bd88-5599-4820-8e07-d812ec5e5d50
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791479665.296469/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.aarch64
  rpm-sequoia-1.10.3-1.fc46.aarch64
  dnf5-5.4.6.0-1.fc46.aarch64
  dnf5-plugins-5.4.6.0-1.fc46.aarch64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 Copr repository                        100% |   7.7 MiB/s | 696.6 KiB |  00m00s
 fedora                                 100% |  17.7 MiB/s |  21.0 MiB |  00m01s
Repositories loaded.
Package                            Arch    Version                      Repository      Size
Installing group/module packages:
 bash                              aarch64 0:5.3.20-1.fc46              fedora       8.4 MiB
 bzip2                             aarch64 0:1.0.8-24.fc45              fedora     171.2 KiB
 coreutils                         aarch64 0:9.12-1.fc46                fedora       8.6 MiB
 cpio                              aarch64 0:2.15-10.fc45               fedora       1.1 MiB
 diffutils                         aarch64 0:3.12-6.fc45                fedora       1.6 MiB
 fedora-release-common             noarch  0:46-0.1                     fedora       4.6 KiB
 findutils                         aarch64 1:4.11.0-2.fc45              fedora       2.0 MiB
 gawk                              aarch64 0:5.4.1-1.fc45               fedora       2.9 MiB
 glibc-minimal-langpack            aarch64 0:2.44.9000-4.fc46           fedora       0.0   B
 grep                              aarch64 0:3.12-4.fc45                fedora       1.0 MiB
 gzip                              aarch64 0:1.14-4.fc45                fedora     437.6 KiB
 info                              aarch64 0:7.3-3.fc45                 fedora     424.4 KiB
 patch                             aarch64 0:2.8-6.fc46                 fedora     262.4 KiB
 redhat-rpm-config                 noarch  0:345-4.fc46                 fedora     184.2 KiB
 rpm-build                         aarch64 0:6.1.0-1.fc46               fedora     616.1 KiB
 sed                               aarch64 0:4.10-2.fc45                fedora     878.4 KiB
 shadow-utils                      aarch64 2:4.20.0-1.fc45              fedora       4.4 MiB
 tar                               aarch64 2:1.35-9.fc45                fedora       3.0 MiB
 unzip                             aarch64 0:6.0-71.fc45                fedora     469.9 KiB
 util-linux                        aarch64 0:2.42.4-2.fc46              fedora       6.9 MiB
 which                             aarch64 0:2.25-2.fc45                fedora     123.6 KiB
 xz                                aarch64 1:5.8.4-1.fc46               fedora       1.5 MiB
Installing dependencies:
 R-srpm-macros                     noarch  0:1.3.7-3.fc45               fedora       3.5 KiB
 add-determinism                   aarch64 0:0.7.3-3.fc45               fedora       1.9 MiB
 alternatives                      aarch64 0:1.33-6.fc45                fedora      90.1 KiB
 ansible-srpm-macros               noarch  0:1-22.fc45                  fedora      35.7 KiB
 audit-libs                        aarch64 0:4.2.1-2.fc45               fedora     486.7 KiB
 binutils                          aarch64 0:2.47.50-12.fc46            fedora      27.2 MiB
 build-reproducibility-srpm-macros noarch  0:0.7.3-3.fc45               fedora       1.2 KiB
 bzip2-libs                        aarch64 0:1.0.8-24.fc45              fedora      72.5 KiB
 ca-certificates                   noarch  0:2026.2.90_v9.0.317-1.fc46  fedora       2.6 MiB
 cmake-srpm-macros                 noarch  0:4.3.0-5.fc45               fedora     524.0   B
 coreutils-common                  aarch64 0:9.12-1.fc46                fedora      11.5 MiB
 crypto-policies                   noarch  0:20260713-2.gitc42da77.fc45 fedora     134.3 KiB
 curl                              aarch64 0:8.23.0~rc2-1.fc46          fedora     525.6 KiB
 cyrus-sasl-lib                    aarch64 0:2.1.28-37.fc45             fedora       2.4 MiB
 debugedit                         aarch64 0:5.3-3.fc45                 fedora     320.9 KiB
 dwz                               aarch64 0:0.17-3.fc45                fedora     322.7 KiB
 ed                                aarch64 0:1.22.6-1.fc46              fedora     158.9 KiB
 efi-srpm-macros                   noarch  0:6-9.fc45                   fedora      40.3 KiB
 elfutils                          aarch64 0:0.196-1.fc46               fedora       3.8 MiB
 elfutils-debuginfod-client        aarch64 0:0.196-1.fc46               fedora     144.0 KiB
 elfutils-libelf                   aarch64 0:0.196-1.fc46               fedora       1.5 MiB
 elfutils-libs                     aarch64 0:0.196-1.fc46               fedora     746.6 KiB
 erlang-srpm-macros                noarch  0:0.4.0-1.fc46               fedora       2.0 KiB
 fedora-gpg-keys                   noarch  0:46-0.3                     fedora     130.3 KiB
 fedora-release                    noarch  0:46-0.1                     fedora       0.0   B
 fedora-release-identity-basic     noarch  0:46-0.1                     fedora     664.0   B
 fedora-repos                      noarch  0:46-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch  0:46-0.3                     fedora       2.2 KiB
 file                              aarch64 0:5.48-3.fc46                fedora     141.9 KiB
 file-libs                         aarch64 0:5.48-3.fc46                fedora      12.4 MiB
 filesystem                        aarch64 0:3.18-59.fc45               fedora     112.0   B
 filesystem-srpm-macros            noarch  0:3.18-59.fc45               fedora      38.2 KiB
 fips-provider                     aarch64 0:1.5.3-1.fc46               fedora       3.8 MiB
 fonts-srpm-macros                 noarch  1:5.0.0-4.fc45               fedora      55.8 KiB
 forge-srpm-macros                 noarch  0:0.4.0-5.fc45               fedora      38.9 KiB
 fpc-srpm-macros                   noarch  0:1.3-17.fc45                fedora     144.0   B
 gap-srpm-macros                   noarch  0:2-3.fc45                   fedora       2.1 KiB
 gdb-minimal                       aarch64 0:17.2-6.fc46                fedora      13.5 MiB
 gdbm-libs                         aarch64 1:1.26-1.fc46                fedora     234.3 KiB
 ghc-srpm-macros                   noarch  0:1.10-2.fc45                fedora     792.0   B
 glibc                             aarch64 0:2.44.9000-4.fc46           fedora       6.6 MiB
 glibc-common                      aarch64 0:2.44.9000-4.fc46           fedora       1.3 MiB
 glibc-gconv-extra                 aarch64 0:2.44.9000-4.fc46           fedora      18.6 MiB
 gmp                               aarch64 1:6.3.0-6.fc45               fedora     657.9 KiB
 gnat-srpm-macros                  noarch  0:7-3.fc45                   fedora       1.0 KiB
 gnome-srpm-macros                 noarch  0:1.0-2.fc45                 fedora       3.5 KiB
 gnulib-l10n                       noarch  0:20241231-4.fc45            fedora     655.0 KiB
 gnupg2                            aarch64 0:2.4.9-18.fc45              fedora       6.4 MiB
 gnupg2-dirmngr                    aarch64 0:2.4.9-18.fc45              fedora     646.1 KiB
 gnupg2-gpg-agent                  aarch64 0:2.4.9-18.fc45              fedora     846.9 KiB
 gnupg2-gpgconf                    aarch64 0:2.4.9-18.fc45              fedora     321.8 KiB
 gnupg2-keyboxd                    aarch64 0:2.4.9-18.fc45              fedora     233.2 KiB
 gnupg2-verify                     aarch64 0:2.4.9-18.fc45              fedora     364.3 KiB
 gnutls                            aarch64 0:3.8.13-5.fc46              fedora       3.7 MiB
 go-srpm-macros                    noarch  0:3.8.0-3.fc45               fedora      61.9 KiB
 gpgverify                         noarch  0:2.2-5.fc45                 fedora       8.7 KiB
 ima-evm-utils-libs                aarch64 0:1.6.2-12.fc45              fedora      92.6 KiB
 jansson                           aarch64 0:2.14-5.fc45                fedora      93.0 KiB
 java-srpm-macros                  noarch  0:1-9.fc45                   fedora     870.0   B
 json-c                            aarch64 0:0.18-9.fc45                fedora     138.5 KiB
 kernel-srpm-macros                noarch  0:1.0-30.fc45                fedora       1.9 KiB
 keyutils-libs                     aarch64 0:1.6.3-8.fc45               fedora      98.2 KiB
 krb5-libs                         aarch64 0:1.22.2-9.fc45              fedora       2.5 MiB
 libacl                            aarch64 0:2.4.0-2.fc45               fedora      67.9 KiB
 libarchive                        aarch64 0:3.8.9-2.fc46               fedora     975.7 KiB
 libassuan                         aarch64 0:2.5.7-6.fc45               fedora     215.9 KiB
 libattr                           aarch64 0:2.6.0-2.fc45               fedora      68.4 KiB
 libblkid                          aarch64 0:2.42.4-2.fc46              fedora     290.3 KiB
 libbrotli                         aarch64 0:1.2.0-6.fc45               fedora     909.2 KiB
 libcap                            aarch64 0:2.78-2.fc45                fedora     508.4 KiB
 libcap-ng                         aarch64 0:0.9.6-1.fc46               fedora     160.9 KiB
 libcbor                           aarch64 0:0.14.0-3.fc45              fedora     139.6 KiB
 libcom_err                        aarch64 0:1.47.4-2.fc45              fedora     111.1 KiB
 libcurl                           aarch64 0:8.23.0~rc2-1.fc46          fedora       1.0 MiB
 libeconf                          aarch64 0:0.7.9-4.fc45               fedora      80.8 KiB
 libevent                          aarch64 0:2.1.13-1.fc46              fedora       1.1 MiB
 libfdisk                          aarch64 0:2.42.4-2.fc46              fedora     418.8 KiB
 libffi                            aarch64 0:3.8.0-1.fc46               fedora     159.6 KiB
 libfido2                          aarch64 0:1.17.0-6.fc46              fedora     280.7 KiB
 libfsverity                       aarch64 0:1.7-4.fc45                 fedora      68.4 KiB
 libgcc                            aarch64 0:16.2.1-2.fc46.1            fedora     222.3 KiB
 libgcrypt                         aarch64 0:1.12.4-1.fc46              fedora       1.2 MiB
 libgomp                           aarch64 0:16.2.1-2.fc46.1            fedora     592.9 KiB
 libgpg-error                      aarch64 0:1.61-2.fc45                fedora     997.9 KiB
 libidn2                           aarch64 0:2.3.8-4.fc45               fedora     560.5 KiB
 libksba                           aarch64 0:1.8.1-1.fc46               fedora     407.8 KiB
 liblastlog2                       aarch64 0:2.42.4-2.fc46              fedora     137.8 KiB
 libmount                          aarch64 0:2.42.4-2.fc46              fedora     420.4 KiB
 libnghttp2                        aarch64 0:1.69.0-6.fc46              fedora     197.9 KiB
 libnghttp3                        aarch64 0:1.18.0-1.fc45              fedora     206.8 KiB
 libpfm                            aarch64 0:4.13.0-23.fc45             fedora     252.0 KiB
 libpkgconf                        aarch64 0:2.5.1-2.fc45               fedora     134.0 KiB
 libpsl                            aarch64 0:0.23.3-1.fc46              fedora     132.5 KiB
 libselinux                        aarch64 0:3.11-5.fc46                fedora     265.2 KiB
 libselinux-utils                  aarch64 0:3.11-5.fc46                fedora       1.3 MiB
 libsemanage                       aarch64 0:3.11-4.fc46                fedora     360.3 KiB
 libsepol                          aarch64 0:3.11-2.fc45                fedora     809.9 KiB
 libsmartcols                      aarch64 0:2.42.4-2.fc46              fedora     224.4 KiB
 libssh                            aarch64 0:0.12.2-1.fc45              fedora     721.4 KiB
 libssh-config                     noarch  0:0.12.2-1.fc45              fedora     277.0   B
 libstdc++                         aarch64 0:16.2.1-2.fc46.1            fedora       3.0 MiB
 libtasn1                          aarch64 0:4.21.0-2.fc45              fedora     220.7 KiB
 libtool-ltdl                      aarch64 0:2.6.2-1.fc46               fedora      93.9 KiB
 libunistring                      aarch64 0:1.1-12.fc45                fedora       1.7 MiB
 libusb1                           aarch64 0:1.0.30-2.fc45              fedora     179.7 KiB
 libuuid                           aarch64 0:2.42.4-2.fc46              fedora      69.3 KiB
 libverto                          aarch64 0:0.3.2-13.fc45              fedora      69.3 KiB
 libxcrypt                         aarch64 0:4.5.2-4.fc45               fedora     273.2 KiB
 libxml2                           aarch64 0:2.15.4-1.fc46              fedora       1.7 MiB
 libzstd                           aarch64 0:1.5.7-6.fc45               fedora     860.3 KiB
 linkdupes                         aarch64 0:0.7.3-3.fc45               fedora     711.0 KiB
 lua-libs                          aarch64 0:5.5.1-2.fc46               fedora     330.0 KiB
 lua-srpm-macros                   noarch  0:1-18.fc45                  fedora       1.3 KiB
 lz4-libs                          aarch64 0:1.10.0-5.fc45              fedora     197.3 KiB
 meson-srpm-macros                 noarch  0:1.12.1-2.fc46              fedora       1.7 KiB
 mpfr                              aarch64 0:4.2.2-4.fc45               fedora     755.4 KiB
 ncurses-base                      noarch  0:6.6-3.fc45                 fedora     329.7 KiB
 ncurses-libs                      aarch64 0:6.6-3.fc45                 fedora       1.2 MiB
 nettle                            aarch64 0:4.0-5.fc45                 fedora     836.7 KiB
 ngtcp2                            aarch64 0:1.22.1-3.fc45              fedora     341.1 KiB
 ngtcp2-crypto-ossl                aarch64 0:1.22.1-3.fc45              fedora      67.5 KiB
 npth                              aarch64 0:1.8-5.fc45                 fedora      93.4 KiB
 ocaml-srpm-macros                 noarch  0:11-4.fc45                  fedora       1.9 KiB
 openblas-srpm-macros              noarch  0:2-23.fc46                  fedora     124.0   B
 openldap                          aarch64 0:2.6.15-1.fc46              fedora     765.6 KiB
 openssl-libs                      aarch64 1:4.0.3-1.fc46               fedora       5.8 MiB
 p11-kit                           aarch64 0:0.26.5-1.fc45              fedora       2.8 MiB
 p11-kit-trust                     aarch64 0:0.26.5-1.fc45              fedora     530.1 KiB
 package-notes-srpm-macros         noarch  0:0.20-2.fc45                fedora       1.6 KiB
 pam-libs                          aarch64 0:1.7.2-4.fc45               fedora     222.7 KiB
 pcre2                             aarch64 0:10.47-1.fc45.2             fedora     714.4 KiB
 pcre2-syntax                      noarch  0:10.47-1.fc45.2             fedora     281.9 KiB
 perl-srpm-macros                  noarch  0:1-65.fc45                  fedora     861.0   B
 pkgconf                           aarch64 0:2.5.1-2.fc45               fedora     116.8 KiB
 pkgconf-m4                        noarch  0:2.5.1-2.fc45               fedora      14.3 KiB
 pkgconf-pkg-config                aarch64 0:2.5.1-2.fc45               fedora     990.0   B
 policycoreutils                   aarch64 0:3.11-2.fc45                fedora       1.5 MiB
 popt                              aarch64 0:1.19-11.fc45               fedora     144.7 KiB
 publicsuffix-list-dafsa           noarch  0:20260624-2.fc45            fedora      71.3 KiB
 pyproject-srpm-macros             noarch  0:1.23.2-1.fc45              fedora       3.4 KiB
 python-srpm-macros                noarch  0:3.15-2.fc45                fedora      51.6 KiB
 qt5-srpm-macros                   noarch  0:5.15.18-3.fc45             fedora     500.0   B
 qt6-srpm-macros                   noarch  0:6.11.2-1.fc46              fedora     472.0   B
 readline                          aarch64 0:8.3-7.fc46                 fedora     563.6 KiB
 redhat-systemd-presets            noarch  0:102-3.fc45                 fedora       1.0 KiB
 redhat-systemd-presets-common     noarch  0:102-3.fc45                 fedora      16.9 KiB
 rpm                               aarch64 0:6.1.0-1.fc46               fedora       3.3 MiB
 rpm-build-libs                    aarch64 0:6.1.0-1.fc46               fedora     264.0 KiB
 rpm-libs                          aarch64 0:6.1.0-1.fc46               fedora       1.1 MiB
 rpm-plugin-selinux                aarch64 0:6.1.0-1.fc46               fedora      67.9 KiB
 rpm-sequoia                       aarch64 0:1.10.3-1.fc46              fedora       2.3 MiB
 rpm-sign-libs                     aarch64 0:6.1.0-1.fc46               fedora      67.7 KiB
 rust-srpm-macros                  noarch  0:28.5-2.fc45                fedora       5.5 KiB
 selinux-policy                    noarch  0:45.21-1.fc46               fedora      32.1 KiB
 selinux-policy-targeted           noarch  0:45.21-1.fc46               fedora      19.0 MiB
 setup                             noarch  0:2.15.1-2.fc45              fedora     725.6 KiB
 sqlite-libs                       aarch64 0:3.53.4-1.fc45              fedora       1.6 MiB
 systemd-libs                      aarch64 0:262-3.fc46                 fedora       2.8 MiB
 systemd-standalone-sysusers       aarch64 0:262-3.fc46                 fedora     979.3 KiB
 tpm2-tss                          aarch64 0:4.2.0-1.fc45               fedora       2.2 MiB
 tree-sitter-srpm-macros           noarch  0:0.4.6-2.fc45               fedora       8.6 KiB
 util-linux-core                   aarch64 0:2.42.4-2.fc46              fedora       2.5 MiB
 xxhash-libs                       aarch64 0:0.8.4-1.fc46               fedora      85.8 KiB
 xz-libs                           aarch64 1:5.8.4-1.fc46               fedora     265.5 KiB
 zig-srpm-macros                   noarch  0:1-9.fc45                   fedora       1.3 KiB
 zip                               aarch64 0:3.0-46.fc45                fedora     762.2 KiB
 zlib-ng-compat                    aarch64 0:2.3.3-6.fc45               fedora     133.4 KiB
 zstd                              aarch64 0:1.5.7-6.fc45               fedora     562.3 KiB
Installing groups:
 Buildsystem building group                                                                 

Transaction Summary:
 Installing:       190 packages

Total size of inbound packages is 69 MiB. Need to download 69 MiB.
After this operation, 253 MiB extra will be used (install 253 MiB, remove 0 B).
[  1/190] bzip2-0:1.0.8-24.fc45.aarch64 100% | 488.0 KiB/s |  52.2 KiB |  00m00s
[  2/190] bash-0:5.3.20-1.fc46.aarch64  100% |  13.7 MiB/s |   1.8 MiB |  00m00s
[  3/190] coreutils-0:9.12-1.fc46.aarch 100% |   6.9 MiB/s |   1.2 MiB |  00m00s
[  4/190] cpio-0:2.15-10.fc45.aarch64   100% |   1.9 MiB/s | 289.7 KiB |  00m00s
[  5/190] diffutils-0:3.12-6.fc45.aarch 100% |   2.9 MiB/s | 392.3 KiB |  00m00s
[  6/190] fedora-release-common-0:46-0. 100% | 227.6 KiB/s |  18.2 KiB |  00m00s
[  7/190] findutils-1:4.11.0-2.fc45.aar 100% |  12.6 MiB/s | 569.9 KiB |  00m00s
[  8/190] gawk-0:5.4.1-1.fc45.aarch64   100% |  11.6 MiB/s |   1.1 MiB |  00m00s
[  9/190] glibc-minimal-langpack-0:2.44 100% | 939.0 KiB/s | 137.1 KiB |  00m00s
[ 10/190] grep-0:3.12-4.fc45.aarch64    100% |   1.7 MiB/s | 296.0 KiB |  00m00s
[ 11/190] gzip-0:1.14-4.fc45.aarch64    100% |   1.4 MiB/s | 173.6 KiB |  00m00s
[ 12/190] info-0:7.3-3.fc45.aarch64     100% | 892.9 KiB/s | 183.9 KiB |  00m00s
[ 13/190] patch-0:2.8-6.fc46.aarch64    100% | 571.2 KiB/s | 110.8 KiB |  00m00s
[ 14/190] redhat-rpm-config-0:345-4.fc4 100% | 394.6 KiB/s |  78.1 KiB |  00m00s
[ 15/190] rpm-build-0:6.1.0-1.fc46.aarc 100% |   1.6 MiB/s | 152.9 KiB |  00m00s
[ 16/190] sed-0:4.10-2.fc45.aarch64     100% |   3.8 MiB/s | 319.1 KiB |  00m00s
[ 17/190] shadow-utils-2:4.20.0-1.fc45. 100% |   7.3 MiB/s |   1.4 MiB |  00m00s
[ 18/190] tar-2:1.35-9.fc45.aarch64     100% |   4.2 MiB/s | 854.2 KiB |  00m00s
[ 19/190] unzip-0:6.0-71.fc45.aarch64   100% | 975.8 KiB/s | 199.1 KiB |  00m00s
[ 20/190] util-linux-0:2.42.4-2.fc46.aa 100% |  10.0 MiB/s |   1.2 MiB |  00m00s
[ 21/190] which-0:2.25-2.fc45.aarch64   100% | 404.5 KiB/s |  41.7 KiB |  00m00s
[ 22/190] xz-1:5.8.4-1.fc46.aarch64     100% |   4.9 MiB/s | 653.9 KiB |  00m00s
[ 23/190] filesystem-0:3.18-59.fc45.aar 100% |   8.8 MiB/s |   1.8 MiB |  00m00s
[ 24/190] glibc-0:2.44.9000-4.fc46.aarc 100% |   6.2 MiB/s |   2.1 MiB |  00m00s
[ 25/190] ncurses-libs-0:6.6-3.fc45.aar 100% |   1.0 MiB/s | 324.6 KiB |  00m00s
[ 26/190] bzip2-libs-0:1.0.8-24.fc45.aa 100% | 202.0 KiB/s |  41.2 KiB |  00m00s
[ 27/190] coreutils-common-0:9.12-1.fc4 100% |   8.4 MiB/s |   2.2 MiB |  00m00s
[ 28/190] gmp-1:6.3.0-6.fc45.aarch64    100% |   1.2 MiB/s | 270.7 KiB |  00m00s
[ 29/190] libacl-0:2.4.0-2.fc45.aarch64 100% | 115.6 KiB/s |  26.7 KiB |  00m00s
[ 30/190] libattr-0:2.6.0-2.fc45.aarch6 100% | 540.0 KiB/s |  17.8 KiB |  00m00s
[ 31/190] libcap-0:2.78-2.fc45.aarch64  100% |   1.7 MiB/s |  88.4 KiB |  00m00s
[ 32/190] libselinux-0:3.11-5.fc46.aarc 100% |   1.8 MiB/s | 100.0 KiB |  00m00s
[ 33/190] openssl-libs-1:4.0.3-1.fc46.a 100% |   7.5 MiB/s |   2.1 MiB |  00m00s
[ 34/190] systemd-libs-0:262-3.fc46.aar 100% |   3.0 MiB/s | 880.4 KiB |  00m00s
[ 35/190] fedora-repos-0:46-0.3.noarch  100% |  36.1 KiB/s |   9.6 KiB |  00m00s
[ 36/190] redhat-systemd-presets-0:102- 100% | 267.0 KiB/s |   8.5 KiB |  00m00s
[ 37/190] mpfr-0:4.2.2-4.fc45.aarch64   100% |   2.1 MiB/s | 319.4 KiB |  00m00s
[ 38/190] readline-0:8.3-7.fc46.aarch64 100% |   1.1 MiB/s | 220.9 KiB |  00m00s
[ 39/190] glibc-common-0:2.44.9000-4.fc 100% |   1.6 MiB/s | 415.5 KiB |  00m00s
[ 40/190] pcre2-0:10.47-1.fc45.2.aarch6 100% |   1.8 MiB/s | 250.2 KiB |  00m00s
[ 41/190] ed-0:1.22.6-1.fc46.aarch64    100% | 563.8 KiB/s |  84.0 KiB |  00m00s
[ 42/190] R-srpm-macros-0:1.3.7-3.fc45. 100% |  95.3 KiB/s |  11.1 KiB |  00m00s
[ 43/190] ansible-srpm-macros-0:1-22.fc 100% | 183.7 KiB/s |  19.8 KiB |  00m00s
[ 44/190] build-reproducibility-srpm-ma 100% |  98.5 KiB/s |  10.8 KiB |  00m00s
[ 45/190] cmake-srpm-macros-0:4.3.0-5.f 100% |  99.4 KiB/s |  10.3 KiB |  00m00s
[ 46/190] dwz-0:0.17-3.fc45.aarch64     100% | 963.1 KiB/s | 132.9 KiB |  00m00s
[ 47/190] efi-srpm-macros-0:6-9.fc45.no 100% | 302.0 KiB/s |  21.4 KiB |  00m00s
[ 48/190] erlang-srpm-macros-0:0.4.0-1. 100% | 121.7 KiB/s |  10.0 KiB |  00m00s
[ 49/190] file-0:5.48-3.fc46.aarch64    100% | 957.4 KiB/s |  50.7 KiB |  00m00s
[ 50/190] filesystem-srpm-macros-0:3.18 100% | 361.8 KiB/s |  26.4 KiB |  00m00s
[ 51/190] fonts-srpm-macros-1:5.0.0-4.f 100% | 393.5 KiB/s |  27.2 KiB |  00m00s
[ 52/190] forge-srpm-macros-0:0.4.0-5.f 100% | 372.2 KiB/s |  19.7 KiB |  00m00s
[ 53/190] fpc-srpm-macros-0:1.3-17.fc45 100% | 235.2 KiB/s |   7.8 KiB |  00m00s
[ 54/190] gap-srpm-macros-0:2-3.fc45.no 100% | 190.0 KiB/s |   9.3 KiB |  00m00s
[ 55/190] ghc-srpm-macros-0:1.10-2.fc45 100% | 180.7 KiB/s |   8.5 KiB |  00m00s
[ 56/190] gnat-srpm-macros-0:7-3.fc45.n 100% | 158.7 KiB/s |   8.6 KiB |  00m00s
[ 57/190] gnome-srpm-macros-0:1.0-2.fc4 100% | 129.8 KiB/s |   8.8 KiB |  00m00s
[ 58/190] go-srpm-macros-0:3.8.0-3.fc45 100% | 471.3 KiB/s |  27.8 KiB |  00m00s
[ 59/190] java-srpm-macros-0:1-9.fc45.n 100% | 159.3 KiB/s |   8.3 KiB |  00m00s
[ 60/190] kernel-srpm-macros-0:1.0-30.f 100% | 176.4 KiB/s |   8.3 KiB |  00m00s
[ 61/190] lua-srpm-macros-0:1-18.fc45.n 100% | 184.8 KiB/s |   8.7 KiB |  00m00s
[ 62/190] meson-srpm-macros-0:1.12.1-2. 100% | 256.7 KiB/s |  11.8 KiB |  00m00s
[ 63/190] ocaml-srpm-macros-0:11-4.fc45 100% | 331.5 KiB/s |   9.0 KiB |  00m00s
[ 64/190] openblas-srpm-macros-0:2-23.f 100% | 314.6 KiB/s |   7.5 KiB |  00m00s
[ 65/190] package-notes-srpm-macros-0:0 100% | 276.3 KiB/s |  10.5 KiB |  00m00s
[ 66/190] perl-srpm-macros-0:1-65.fc45. 100% | 491.3 KiB/s |   8.4 KiB |  00m00s
[ 67/190] pyproject-srpm-macros-0:1.23. 100% | 399.0 KiB/s |  15.6 KiB |  00m00s
[ 68/190] python-srpm-macros-0:3.15-2.f 100% | 356.0 KiB/s |  23.9 KiB |  00m00s
[ 69/190] qt5-srpm-macros-0:5.15.18-3.f 100% | 120.3 KiB/s |   8.1 KiB |  00m00s
[ 70/190] qt6-srpm-macros-0:6.11.2-1.fc 100% | 193.2 KiB/s |   9.1 KiB |  00m00s
[ 71/190] rpm-0:6.1.0-1.fc46.aarch64    100% |   3.8 MiB/s | 573.1 KiB |  00m00s
[ 72/190] rust-srpm-macros-0:28.5-2.fc4 100% |  68.5 KiB/s |  11.4 KiB |  00m00s
[ 73/190] tree-sitter-srpm-macros-0:0.4 100% |  84.9 KiB/s |  14.0 KiB |  00m00s
[ 74/190] zig-srpm-macros-0:1-9.fc45.no 100% |  78.7 KiB/s |   8.8 KiB |  00m00s
[ 75/190] zip-0:3.0-46.fc45.aarch64     100% |   2.7 MiB/s | 265.9 KiB |  00m00s
[ 76/190] binutils-0:2.47.50-12.fc46.aa 100% |   9.9 MiB/s |   5.3 MiB |  00m01s
[ 77/190] debugedit-0:5.3-3.fc45.aarch6 100% | 188.9 KiB/s |  86.7 KiB |  00m00s
[ 78/190] elfutils-0:0.196-1.fc46.aarch 100% |   1.2 MiB/s | 642.3 KiB |  00m01s
[ 79/190] elfutils-libelf-0:0.196-1.fc4 100% |   1.6 MiB/s | 235.6 KiB |  00m00s
[ 80/190] libarchive-0:3.8.9-2.fc46.aar 100% |   2.9 MiB/s | 418.3 KiB |  00m00s
[ 81/190] libgcc-0:16.2.1-2.fc46.1.aarc 100% | 798.2 KiB/s | 118.1 KiB |  00m00s
[ 82/190] libstdc++-0:16.2.1-2.fc46.1.a 100% |   6.5 MiB/s | 918.1 KiB |  00m00s
[ 83/190] pkgconf-pkg-config-0:2.5.1-2. 100% |  70.8 KiB/s |   9.5 KiB |  00m00s
[ 84/190] popt-0:1.19-11.fc45.aarch64   100% | 542.6 KiB/s |  65.1 KiB |  00m00s
[ 85/190] rpm-build-libs-0:6.1.0-1.fc46 100% |   1.7 MiB/s | 120.6 KiB |  00m00s
[ 86/190] rpm-libs-0:6.1.0-1.fc46.aarch 100% |   3.9 MiB/s | 429.5 KiB |  00m00s
[ 87/190] zstd-0:1.5.7-6.fc45.aarch64   100% |   2.4 MiB/s | 183.0 KiB |  00m00s
[ 88/190] audit-libs-0:4.2.1-2.fc45.aar 100% |   1.9 MiB/s | 142.0 KiB |  00m00s
[ 89/190] libeconf-0:0.7.9-4.fc45.aarch 100% | 366.2 KiB/s |  34.8 KiB |  00m00s
[ 90/190] libsemanage-0:3.11-4.fc46.aar 100% |   1.2 MiB/s | 122.4 KiB |  00m00s
[ 91/190] libxcrypt-0:4.5.2-4.fc45.aarc 100% |   1.1 MiB/s | 125.2 KiB |  00m00s
[ 92/190] pam-libs-0:1.7.2-4.fc45.aarch 100% | 684.3 KiB/s |  56.8 KiB |  00m00s
[ 93/190] setup-0:2.15.1-2.fc45.noarch  100% |   2.0 MiB/s | 157.6 KiB |  00m00s
[ 94/190] libblkid-0:2.42.4-2.fc46.aarc 100% |   1.6 MiB/s | 126.5 KiB |  00m00s
[ 95/190] libcap-ng-0:0.9.6-1.fc46.aarc 100% | 516.6 KiB/s |  35.1 KiB |  00m00s
[ 96/190] libfdisk-0:2.42.4-2.fc46.aarc 100% |   4.1 MiB/s | 156.2 KiB |  00m00s
[ 97/190] liblastlog2-0:2.42.4-2.fc46.a 100% | 541.0 KiB/s |  24.9 KiB |  00m00s
[ 98/190] libmount-0:2.42.4-2.fc46.aarc 100% |   3.9 MiB/s | 166.9 KiB |  00m00s
[ 99/190] libsmartcols-0:2.42.4-2.fc46. 100% | 427.1 KiB/s |  85.0 KiB |  00m00s
[100/190] libuuid-0:2.42.4-2.fc46.aarch 100% | 150.3 KiB/s |  27.0 KiB |  00m00s
[101/190] util-linux-core-0:2.42.4-2.fc 100% |   2.5 MiB/s | 568.7 KiB |  00m00s
[102/190] zlib-ng-compat-0:2.3.3-6.fc45 100% | 627.2 KiB/s |  72.1 KiB |  00m00s
[103/190] xz-libs-1:5.8.4-1.fc46.aarch6 100% | 952.3 KiB/s | 111.4 KiB |  00m00s
[104/190] glibc-gconv-extra-0:2.44.9000 100% |   6.7 MiB/s |   1.8 MiB |  00m00s
[105/190] ncurses-base-0:6.6-3.fc45.noa 100% | 326.4 KiB/s |  88.1 KiB |  00m00s
[106/190] gnulib-l10n-0:20241231-4.fc45 100% | 531.6 KiB/s | 150.4 KiB |  00m00s
[107/190] libsepol-0:3.11-2.fc45.aarch6 100% |   1.5 MiB/s | 326.0 KiB |  00m00s
[108/190] ca-certificates-0:2026.2.90_v 100% |   5.9 MiB/s | 964.7 KiB |  00m00s
[109/190] crypto-policies-0:20260713-2. 100% | 551.0 KiB/s |  97.5 KiB |  00m00s
[110/190] fips-provider-0:1.5.3-1.fc46. 100% |   9.6 MiB/s |   1.5 MiB |  00m00s
[111/190] fedora-gpg-keys-0:46-0.3.noar 100% | 985.2 KiB/s | 143.8 KiB |  00m00s
[112/190] fedora-repos-rawhide-0:46-0.3 100% |  46.8 KiB/s |   9.0 KiB |  00m00s
[113/190] redhat-systemd-presets-common 100% | 152.1 KiB/s |  13.2 KiB |  00m00s
[114/190] pcre2-syntax-0:10.47-1.fc45.2 100% |   1.3 MiB/s | 165.1 KiB |  00m00s
[115/190] add-determinism-0:0.7.3-3.fc4 100% |  10.7 MiB/s | 788.1 KiB |  00m00s
[116/190] linkdupes-0:0.7.3-3.fc45.aarc 100% |   2.4 MiB/s | 322.6 KiB |  00m00s
[117/190] file-libs-0:5.48-3.fc46.aarch 100% |   8.6 MiB/s | 878.1 KiB |  00m00s
[118/190] curl-0:8.23.0~rc2-1.fc46.aarc 100% |   1.9 MiB/s | 238.9 KiB |  00m00s
[119/190] alternatives-0:1.33-6.fc45.aa 100% | 239.2 KiB/s |  38.7 KiB |  00m00s
[120/190] elfutils-debuginfod-client-0: 100% | 242.8 KiB/s |  46.4 KiB |  00m00s
[121/190] jansson-0:2.14-5.fc45.aarch64 100% | 331.6 KiB/s |  46.4 KiB |  00m00s
[122/190] libzstd-0:1.5.7-6.fc45.aarch6 100% |   4.5 MiB/s | 329.8 KiB |  00m00s
[123/190] elfutils-libs-0:0.196-1.fc46. 100% |   5.9 MiB/s | 265.8 KiB |  00m00s
[124/190] json-c-0:0.18-9.fc45.aarch64  100% | 805.3 KiB/s |  45.1 KiB |  00m00s
[125/190] libpfm-0:4.13.0-23.fc45.aarch 100% | 816.8 KiB/s |  53.1 KiB |  00m00s
[126/190] libxml2-0:2.15.4-1.fc46.aarch 100% |   4.7 MiB/s | 637.2 KiB |  00m00s
[127/190] lz4-libs-0:1.10.0-5.fc45.aarc 100% | 598.8 KiB/s |  80.2 KiB |  00m00s
[128/190] pkgconf-0:2.5.1-2.fc45.aarch6 100% | 509.7 KiB/s |  48.4 KiB |  00m00s
[129/190] pkgconf-m4-0:2.5.1-2.fc45.noa 100% | 767.1 KiB/s |  13.8 KiB |  00m00s
[130/190] libgomp-0:16.2.1-2.fc46.1.aar 100% |   1.9 MiB/s | 380.8 KiB |  00m00s
[131/190] lua-libs-0:5.5.1-2.fc46.aarch 100% | 614.8 KiB/s | 137.7 KiB |  00m00s
[132/190] rpm-sign-libs-0:6.1.0-1.fc46. 100% | 102.4 KiB/s |  26.1 KiB |  00m00s
[133/190] rpm-sequoia-0:1.10.3-1.fc46.a 100% |   4.2 MiB/s | 885.3 KiB |  00m00s
[134/190] sqlite-libs-0:3.53.4-1.fc45.a 100% |   4.2 MiB/s | 764.7 KiB |  00m00s
[135/190] libffi-0:3.8.0-1.fc46.aarch64 100% | 256.6 KiB/s |  42.1 KiB |  00m00s
[136/190] p11-kit-0:0.26.5-1.fc45.aarch 100% |   6.0 MiB/s | 534.6 KiB |  00m00s
[137/190] p11-kit-trust-0:0.26.5-1.fc45 100% | 628.3 KiB/s | 139.5 KiB |  00m00s
[138/190] libpkgconf-0:2.5.1-2.fc45.aar 100% | 200.5 KiB/s |  40.7 KiB |  00m00s
[139/190] gnupg2-0:2.4.9-18.fc45.aarch6 100% |   7.6 MiB/s |   1.6 MiB |  00m00s
[140/190] ima-evm-utils-libs-0:1.6.2-12 100% | 348.7 KiB/s |  29.6 KiB |  00m00s
[141/190] libfsverity-0:1.7-4.fc45.aarc 100% | 213.2 KiB/s |  18.5 KiB |  00m00s
[142/190] libtasn1-0:4.21.0-2.fc45.aarc 100% |   1.3 MiB/s |  73.4 KiB |  00m00s
[143/190] gpgverify-0:2.2-5.fc45.noarch 100% | 257.1 KiB/s |  11.3 KiB |  00m00s
[144/190] gnupg2-dirmngr-0:2.4.9-18.fc4 100% |   3.1 MiB/s | 263.1 KiB |  00m00s
[145/190] gnupg2-gpg-agent-0:2.4.9-18.f 100% |   3.1 MiB/s | 266.0 KiB |  00m00s
[146/190] gnupg2-gpgconf-0:2.4.9-18.fc4 100% |   1.1 MiB/s | 113.7 KiB |  00m00s
[147/190] gnupg2-keyboxd-0:2.4.9-18.fc4 100% | 671.7 KiB/s |  90.7 KiB |  00m00s
[148/190] gnupg2-verify-0:2.4.9-18.fc45 100% |   1.6 MiB/s | 163.1 KiB |  00m00s
[149/190] libassuan-0:2.5.7-6.fc45.aarc 100% | 647.7 KiB/s |  66.7 KiB |  00m00s
[150/190] libgcrypt-0:1.12.4-1.fc46.aar 100% |  16.5 MiB/s | 539.5 KiB |  00m00s
[151/190] libgpg-error-0:1.61-2.fc45.aa 100% |   2.3 MiB/s | 248.2 KiB |  00m00s
[152/190] npth-0:1.8-5.fc45.aarch64     100% | 213.8 KiB/s |  24.8 KiB |  00m00s
[153/190] tpm2-tss-0:4.2.0-1.fc45.aarch 100% |   1.6 MiB/s | 413.5 KiB |  00m00s
[154/190] gnutls-0:3.8.13-5.fc46.aarch6 100% |   6.6 MiB/s |   1.3 MiB |  00m00s
[155/190] libksba-0:1.8.1-1.fc46.aarch6 100% | 807.6 KiB/s | 162.3 KiB |  00m00s
[156/190] openldap-0:2.6.15-1.fc46.aarc 100% |   3.7 MiB/s | 252.6 KiB |  00m00s
[157/190] libusb1-0:1.0.30-2.fc45.aarch 100% | 920.4 KiB/s |  79.2 KiB |  00m00s
[158/190] libidn2-0:2.3.8-4.fc45.aarch6 100% |   2.3 MiB/s | 174.3 KiB |  00m00s
[159/190] libunistring-0:1.1-12.fc45.aa 100% |   3.7 MiB/s | 538.4 KiB |  00m00s
[160/190] nettle-0:4.0-5.fc45.aarch64   100% |   2.4 MiB/s | 428.3 KiB |  00m00s
[161/190] cyrus-sasl-lib-0:2.1.28-37.fc 100% |   3.6 MiB/s | 766.6 KiB |  00m00s
[162/190] libevent-0:2.1.13-1.fc46.aarc 100% |   1.6 MiB/s | 272.8 KiB |  00m00s
[163/190] libtool-ltdl-0:2.6.2-1.fc46.a 100% | 413.8 KiB/s |  35.6 KiB |  00m00s
[164/190] gdbm-libs-1:1.26-1.fc46.aarch 100% | 887.7 KiB/s |  57.7 KiB |  00m00s
[165/190] fedora-release-0:46-0.1.noarc 100% | 194.9 KiB/s |  11.9 KiB |  00m00s
[166/190] systemd-standalone-sysusers-0 100% |   2.3 MiB/s | 395.8 KiB |  00m00s
[167/190] gdb-minimal-0:17.2-6.fc46.aar 100% |   9.8 MiB/s |   4.3 MiB |  00m00s
[168/190] xxhash-libs-0:0.8.4-1.fc46.aa 100% |  79.0 KiB/s |  34.0 KiB |  00m00s
[169/190] fedora-release-identity-basic 100% |  33.1 KiB/s |  12.7 KiB |  00m00s
[170/190] libcurl-0:8.23.0~rc2-1.fc46.a 100% |   3.4 MiB/s | 463.3 KiB |  00m00s
[171/190] krb5-libs-0:1.22.2-9.fc45.aar 100% |   3.2 MiB/s | 760.6 KiB |  00m00s
[172/190] libbrotli-0:1.2.0-6.fc45.aarc 100% |   1.4 MiB/s | 348.8 KiB |  00m00s
[173/190] libnghttp2-0:1.69.0-6.fc46.aa 100% | 395.5 KiB/s |  74.7 KiB |  00m00s
[174/190] libnghttp3-0:1.18.0-1.fc45.aa 100% | 429.8 KiB/s |  70.1 KiB |  00m00s
[175/190] libpsl-0:0.23.3-1.fc46.aarch6 100% | 740.8 KiB/s |  67.4 KiB |  00m00s
[176/190] libssh-0:0.12.2-1.fc45.aarch6 100% |   1.3 MiB/s | 277.2 KiB |  00m00s
[177/190] ngtcp2-0:1.22.1-3.fc45.aarch6 100% | 927.7 KiB/s | 147.5 KiB |  00m00s
[178/190] ngtcp2-crypto-ossl-0:1.22.1-3 100% | 164.5 KiB/s |  26.2 KiB |  00m00s
[179/190] keyutils-libs-0:1.6.3-8.fc45. 100% | 226.9 KiB/s |  31.5 KiB |  00m00s
[180/190] libcom_err-0:1.47.4-2.fc45.aa 100% | 154.1 KiB/s |  26.5 KiB |  00m00s
[181/190] libverto-0:0.3.2-13.fc45.aarc 100% |  95.5 KiB/s |  20.4 KiB |  00m00s
[182/190] publicsuffix-list-dafsa-0:202 100% | 194.5 KiB/s |  61.1 KiB |  00m00s
[183/190] libfido2-0:1.17.0-6.fc46.aarc 100% | 353.0 KiB/s |  99.2 KiB |  00m00s
[184/190] libssh-config-0:0.12.2-1.fc45 100% |  35.1 KiB/s |   8.9 KiB |  00m00s
[185/190] libcbor-0:0.14.0-3.fc45.aarch 100% | 487.9 KiB/s |  35.1 KiB |  00m00s
[186/190] selinux-policy-targeted-0:45. 100% |  15.3 MiB/s |   6.8 MiB |  00m00s
[187/190] policycoreutils-0:3.11-2.fc45 100% | 495.8 KiB/s | 262.3 KiB |  00m01s
[188/190] selinux-policy-0:45.21-1.fc46 100% |  82.5 KiB/s |  42.0 KiB |  00m01s
[189/190] libselinux-utils-0:3.11-5.fc4 100% |   1.2 MiB/s | 127.0 KiB |  00m00s
[190/190] rpm-plugin-selinux-0:6.1.0-1. 100% |  72.7 KiB/s |  18.0 KiB |  00m00s
--------------------------------------------------------------------------------
[190/190] Total                         100% |   7.1 MiB/s |  68.6 MiB |  00m10s
Running transaction
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0x91211FCE:
 UserID     : "Fedora (46) <fedora-46-primary@fedoraproject.org>"
 Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary
The key was successfully imported.
Importing OpenPGP key 0xF577861E:
 UserID     : "Fedora (45) <fedora-45-primary@fedoraproject.org>"
 Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary
The key was successfully imported.
Importing OpenPGP key 0x9488FB64:
 UserID     : "Fedora (47) <fedora-47-primary@fedoraproject.org>"
 Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary
The key was successfully imported.
[  1/192] Verify package files          100% | 745.0   B/s | 190.0   B |  00m00s
>>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64
>>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.aarch64
>>> [RPM] failed to open /var/lib/mock/fedora-rawhide-aarch64-1791479665.296469/root/etc/group for id/name lookup: No such file or directory
[  2/192] Prepare transaction           100% |   2.2 KiB/s | 190.0   B |  00m00s
[  3/192] Installing libgcc-0:16.2.1-2. 100% | 109.4 MiB/s | 224.0 KiB |  00m00s
[  4/192] Installing redhat-systemd-pre 100% |   0.0   B/s |   1.5 KiB |  00m00s
[  5/192] Installing redhat-systemd-pre 100% |  17.7 MiB/s |  18.1 KiB |  00m00s
[  6/192] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  7/192] Installing publicsuffix-list- 100% |  70.3 MiB/s |  72.0 KiB |  00m00s
[  8/192] Installing fedora-release-ide 100% | 898.4 KiB/s | 920.0   B |  00m00s
[  9/192] Installing fedora-gpg-keys-0: 100% |  29.6 MiB/s | 181.7 KiB |  00m00s
[ 10/192] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.5 KiB |  00m00s
[ 11/192] Installing fedora-repos-0:46- 100% |   0.0   B/s |   5.9 KiB |  00m00s
[ 12/192] Installing fedora-release-com 100% |   7.8 MiB/s |   8.0 KiB |  00m00s
[ 13/192] Installing fedora-release-0:4 100% |  24.2 KiB/s | 124.0   B |  00m00s
>>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch
>>> Scriptlet output:
>>> Creating group 'adm' with GID 4.
>>> Creating group 'audio' with GID 63.
>>> Creating group 'cdrom' with GID 11.
>>> Creating group 'clock' with GID 103.
>>> Creating group 'dialout' with GID 18.
>>> Creating group 'disk' with GID 6.
>>> Creating group 'floppy' with GID 19.
>>> Creating group 'ftp' with GID 50.
>>> Creating group 'games' with GID 20.
>>> Creating group 'input' with GID 104.
>>> Creating group 'kmem' with GID 9.
>>> Creating group 'kvm' with GID 36.
>>> Creating group 'lock' with GID 54.
>>> Creating group 'lp' with GID 7.
>>> Creating group 'mail' with GID 12.
>>> Creating group 'man' with GID 15.
>>> Creating group 'mem' with GID 8.
>>> Creating group 'nobody' with GID 65534.
>>> Creating group 'render' with GID 105.
>>> Creating group 'root' with GID 0.
>>> Creating group 'sgx' with GID 106.
>>> Creating group 'sys' with GID 3.
>>> Creating group 'tape' with GID 33.
>>> Creating group 'tty' with GID 5.
>>> Creating group 'users' with GID 100.
>>> Creating group 'utmp' with GID 22.
>>> Creating group 'video' with GID 39.
>>> Creating group 'wheel' with GID 10.
>>> Creating user 'adm' (adm) with UID 3 and GID 4.
>>> Creating group 'bin' with GID 1.
>>> Creating user 'bin' (bin) with UID 1 and GID 1.
>>> Creating group 'daemon' with GID 2.
>>> Creating user 'daemon' (daemon) with UID 2 and GID 2.
>>> Creating user 'ftp' (FTP User) with UID 14 and GID 50.
>>> Creating user 'games' (games) with UID 12 and GID 100.
>>> Creating user 'halt' (halt) with UID 7 and GID 0.
>>> Creating user 'lp' (lp) with UID 4 and GID 7.
>>> Creating user 'mail' (mail) with UID 8 and GID 12.
>>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534.
>>> Creating user 'operator' (operator) with UID 11 and GID 0.
>>> Creating user 'root' (Super User) with UID 0 and GID 0.
>>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0.
>>> Creating user 'sync' (sync) with UID 5 and GID 0.
>>> 
[ 14/192] Installing setup-0:2.15.1-2.f 100% |  29.8 MiB/s | 731.3 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 15/192] Installing filesystem-0:3.18- 100% |   1.8 MiB/s | 253.6 KiB |  00m00s
[ 16/192] Installing pkgconf-m4-0:2.5.1 100% |  14.4 MiB/s |  14.7 KiB |  00m00s
[ 17/192] Installing pcre2-syntax-0:10. 100% | 138.8 MiB/s | 284.3 KiB |  00m00s
[ 18/192] Installing gnulib-l10n-0:2024 100% | 129.3 MiB/s | 661.9 KiB |  00m00s
[ 19/192] Installing coreutils-common-0 100% | 321.1 MiB/s |  11.6 MiB |  00m00s
[ 20/192] Installing ncurses-base-0:6.6 100% |  49.6 MiB/s | 355.3 KiB |  00m00s
[ 21/192] Installing bash-0:5.3.20-1.fc 100% | 183.3 MiB/s |   8.4 MiB |  00m00s
[ 22/192] Installing glibc-common-0:2.4 100% |  46.0 MiB/s |   1.3 MiB |  00m00s
[ 23/192] Installing glibc-gconv-extra- 100% | 389.2 MiB/s |  18.7 MiB |  00m00s
[ 24/192] Installing glibc-0:2.44.9000- 100% | 131.8 MiB/s |   6.6 MiB |  00m00s
[ 25/192] Installing ncurses-libs-0:6.6 100% | 207.6 MiB/s |   1.2 MiB |  00m00s
[ 26/192] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 27/192] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.3 KiB |  00m00s
[ 28/192] Installing bzip2-libs-0:1.0.8 100% |  71.9 MiB/s |  73.6 KiB |  00m00s
[ 29/192] Installing libgpg-error-0:1.6 100% |  36.3 MiB/s |   1.0 MiB |  00m00s
[ 30/192] Installing readline-0:8.3-7.f 100% | 184.1 MiB/s | 565.7 KiB |  00m00s
[ 31/192] Installing libstdc++-0:16.2.1 100% | 330.2 MiB/s |   3.0 MiB |  00m00s
[ 32/192] Installing libzstd-0:1.5.7-6. 100% | 280.5 MiB/s | 861.6 KiB |  00m00s
[ 33/192] Installing elfutils-libelf-0: 100% | 364.6 MiB/s |   1.5 MiB |  00m00s
[ 34/192] Installing libassuan-0:2.5.7- 100% | 212.6 MiB/s | 217.7 KiB |  00m00s
[ 35/192] Installing libgcrypt-0:1.12.4 100% | 240.7 MiB/s |   1.2 MiB |  00m00s
[ 36/192] Installing gmp-1:6.3.0-6.fc45 100% | 214.9 MiB/s | 660.1 KiB |  00m00s
[ 37/192] Installing libacl-0:2.4.0-2.f 100% |  67.1 MiB/s |  68.8 KiB |  00m00s
[ 38/192] Installing systemd-libs-0:262 100% | 309.0 MiB/s |   2.8 MiB |  00m00s
[ 39/192] Installing libuuid-0:2.42.4-2 100% |  68.8 MiB/s |  70.4 KiB |  00m00s
[ 40/192] Installing popt-0:1.19-11.fc4 100% |  49.3 MiB/s | 151.3 KiB |  00m00s
[ 41/192] Installing xz-libs-1:5.8.4-1. 100% | 260.3 MiB/s | 266.6 KiB |  00m00s
[ 42/192] Installing sqlite-libs-0:3.53 100% | 261.4 MiB/s |   1.6 MiB |  00m00s
[ 43/192] Installing npth-0:1.8-5.fc45. 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
[ 44/192] Installing elfutils-libs-0:0. 100% | 243.7 MiB/s | 748.5 KiB |  00m00s
[ 45/192] Installing libblkid-0:2.42.4- 100% | 142.2 MiB/s | 291.3 KiB |  00m00s
[ 46/192] Installing libsepol-0:3.11-2. 100% | 264.0 MiB/s | 810.9 KiB |  00m00s
[ 47/192] Installing gnupg2-gpgconf-0:2 100% |  13.2 MiB/s | 323.9 KiB |  00m00s
[ 48/192] Installing pcre2-0:10.47-1.fc 100% | 233.0 MiB/s | 715.8 KiB |  00m00s
[ 49/192] Installing libselinux-0:3.11- 100% | 130.1 MiB/s | 266.5 KiB |  00m00s
[ 50/192] Installing grep-0:3.12-4.fc45 100% |  35.8 MiB/s |   1.0 MiB |  00m00s
[ 51/192] Installing sed-0:4.10-2.fc45. 100% |  30.9 MiB/s | 886.9 KiB |  00m00s
[ 52/192] Installing findutils-1:4.11.0 100% |  67.2 MiB/s |   2.0 MiB |  00m00s
[ 53/192] Installing libxcrypt-0:4.5.2- 100% | 134.7 MiB/s | 275.9 KiB |  00m00s
[ 54/192] Installing json-c-0:0.18-9.fc 100% | 136.5 MiB/s | 139.8 KiB |  00m00s
[ 55/192] Installing libtasn1-0:4.21.0- 100% | 217.3 MiB/s | 222.5 KiB |  00m00s
[ 56/192] Installing libunistring-0:1.1 100% | 291.0 MiB/s |   1.7 MiB |  00m00s
[ 57/192] Installing libidn2-0:2.3.8-4. 100% |  61.5 MiB/s | 566.6 KiB |  00m00s
[ 58/192] Installing crypto-policies-0: 100% |  22.3 MiB/s | 159.5 KiB |  00m00s
[ 59/192] Installing xz-1:5.8.4-1.fc46. 100% |  48.5 MiB/s |   1.5 MiB |  00m00s
[ 60/192] Installing libmount-0:2.42.4- 100% | 205.8 MiB/s | 421.5 KiB |  00m00s
[ 61/192] Installing gnupg2-verify-0:2. 100% |  14.9 MiB/s | 365.7 KiB |  00m00s
[ 62/192] Installing mpfr-0:4.2.2-4.fc4 100% | 184.8 MiB/s | 757.1 KiB |  00m00s
[ 63/192] Installing gawk-0:5.4.1-1.fc4 100% |  94.4 MiB/s |   2.9 MiB |  00m00s
[ 64/192] Installing dwz-0:0.17-3.fc45. 100% |  13.2 MiB/s | 324.0 KiB |  00m00s
[ 65/192] Installing libksba-0:1.8.1-1. 100% | 200.3 MiB/s | 410.3 KiB |  00m00s
[ 66/192] Installing unzip-0:6.0-71.fc4 100% |  18.5 MiB/s | 473.4 KiB |  00m00s
[ 67/192] Installing file-libs-0:5.48-3 100% | 618.0 MiB/s |  12.4 MiB |  00m00s
[ 68/192] Installing file-0:5.48-3.fc46 100% |   6.1 MiB/s | 143.4 KiB |  00m00s
[ 69/192] Installing diffutils-0:3.12-6 100% |  56.0 MiB/s |   1.6 MiB |  00m00s
[ 70/192] Installing libattr-0:2.6.0-2. 100% |  67.7 MiB/s |  69.3 KiB |  00m00s
[ 71/192] Installing libeconf-0:0.7.9-4 100% |  80.6 MiB/s |  82.5 KiB |  00m00s
[ 72/192] Installing libcap-ng-0:0.9.6- 100% | 159.0 MiB/s | 162.8 KiB |  00m00s
[ 73/192] Installing audit-libs-0:4.2.1 100% | 238.9 MiB/s | 489.3 KiB |  00m00s
[ 74/192] Installing pam-libs-0:1.7.2-4 100% | 219.8 MiB/s | 225.1 KiB |  00m00s
[ 75/192] Installing libcap-0:2.78-2.fc 100% |  20.9 MiB/s | 513.5 KiB |  00m00s
[ 76/192] Installing libsemanage-0:3.11 100% | 176.8 MiB/s | 362.0 KiB |  00m00s
[ 77/192] Installing libsmartcols-0:2.4 100% | 220.1 MiB/s | 225.4 KiB |  00m00s
[ 78/192] Installing alternatives-0:1.3 100% |   3.9 MiB/s |  91.7 KiB |  00m00s
[ 79/192] Installing lua-libs-0:5.5.1-2 100% | 161.9 MiB/s | 331.5 KiB |  00m00s
[ 80/192] Installing libffi-0:3.8.0-1.f 100% | 157.2 MiB/s | 161.0 KiB |  00m00s
[ 81/192] Installing p11-kit-0:0.26.5-1 100% |  82.3 MiB/s |   2.8 MiB |  00m00s
[ 82/192] Installing p11-kit-trust-0:0. 100% |  17.9 MiB/s | 531.9 KiB |  00m00s
[ 83/192] Installing ngtcp2-0:1.22.1-3. 100% | 167.3 MiB/s | 342.7 KiB |  00m00s
[ 84/192] Installing util-linux-core-0: 100% |  76.8 MiB/s |   2.5 MiB |  00m00s
[ 85/192] Installing liblastlog2-0:2.42 100% |  27.3 MiB/s | 139.8 KiB |  00m00s
[ 86/192] Installing zip-0:3.0-46.fc45. 100% |  29.9 MiB/s | 766.1 KiB |  00m00s
[ 87/192] Installing gnupg2-keyboxd-0:2 100% |  45.8 MiB/s | 234.5 KiB |  00m00s
[ 88/192] Installing libpsl-0:0.23.3-1. 100% | 130.4 MiB/s | 133.6 KiB |  00m00s
[ 89/192] Installing tar-2:1.35-9.fc45. 100% |  91.1 MiB/s |   3.0 MiB |  00m00s
[ 90/192] Installing linkdupes-0:0.7.3- 100% |  27.8 MiB/s | 712.4 KiB |  00m00s
[ 91/192] Installing libselinux-utils-0 100% |  50.3 MiB/s |   1.4 MiB |  00m00s
[ 92/192] Installing libfdisk-0:2.42.4- 100% | 205.0 MiB/s | 419.9 KiB |  00m00s
[ 93/192] Installing fips-provider-0:1. 100% | 344.5 MiB/s |   3.8 MiB |  00m00s
[ 94/192] Installing openssl-libs-1:4.0 100% | 322.9 MiB/s |   5.8 MiB |  00m00s
[ 95/192] Installing coreutils-0:9.12-1 100% | 172.1 MiB/s |   8.6 MiB |  00m00s
[ 96/192] Installing ca-certificates-0: 100% |   1.5 MiB/s |   2.5 MiB |  00m02s
[ 97/192] Installing gzip-0:1.14-4.fc45 100% |  16.0 MiB/s | 443.1 KiB |  00m00s
[ 98/192] Installing util-linux-0:2.42. 100% | 127.5 MiB/s |   7.0 MiB |  00m00s
[ 99/192] Installing policycoreutils-0: 100% |  39.2 MiB/s |   1.5 MiB |  00m00s
[100/192] Installing selinux-policy-0:4 100% |   1.9 MiB/s |  34.5 KiB |  00m00s
[101/192] Installing selinux-policy-tar 100% | 140.3 MiB/s |  15.2 MiB |  00m00s
[102/192] Installing rpm-sequoia-0:1.10 100% | 286.5 MiB/s |   2.3 MiB |  00m00s
[103/192] Installing libfsverity-0:1.7- 100% |  67.8 MiB/s |  69.4 KiB |  00m00s
[104/192] Installing libevent-0:2.1.13- 100% | 271.7 MiB/s |   1.1 MiB |  00m00s
[105/192] Installing ngtcp2-crypto-ossl 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[106/192] Installing libusb1-0:1.0.30-2 100% |  16.1 MiB/s | 181.4 KiB |  00m00s
>>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64
>>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.aarch64
>>> Scriptlet output:
>>> Creating group 'tss' with GID 59.
>>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59.
>>> 
[107/192] Installing tpm2-tss-0:4.2.0-1 100% | 279.3 MiB/s |   2.2 MiB |  00m00s
[108/192] Installing ima-evm-utils-libs 100% |  91.7 MiB/s |  93.9 KiB |  00m00s
[109/192] Installing gnupg2-gpg-agent-0 100% |  27.7 MiB/s | 850.8 KiB |  00m00s
[110/192] Installing nettle-0:4.0-5.fc4 100% | 205.0 MiB/s | 839.8 KiB |  00m00s
[111/192] Installing gnutls-0:3.8.13-5. 100% | 309.1 MiB/s |   3.7 MiB |  00m00s
[112/192] Installing zstd-0:1.5.7-6.fc4 100% |  21.3 MiB/s | 565.9 KiB |  00m00s
[113/192] Installing libxml2-0:2.15.4-1 100% |  59.3 MiB/s |   1.7 MiB |  00m00s
[114/192] Installing bzip2-0:1.0.8-24.f 100% |   7.1 MiB/s | 175.7 KiB |  00m00s
[115/192] Installing add-determinism-0: 100% |  65.7 MiB/s |   1.9 MiB |  00m00s
[116/192] Installing build-reproducibil 100% |   1.5 MiB/s |   1.5 KiB |  00m00s
[117/192] Installing cpio-0:2.15-10.fc4 100% |  39.1 MiB/s |   1.1 MiB |  00m00s
[118/192] Installing ed-0:1.22.6-1.fc46 100% |   6.8 MiB/s | 161.2 KiB |  00m00s
[119/192] Installing patch-0:2.8-6.fc46 100% |  10.7 MiB/s | 263.9 KiB |  00m00s
[120/192] Installing jansson-0:2.14-5.f 100% |  92.2 MiB/s |  94.4 KiB |  00m00s
[121/192] Installing libpfm-0:4.13.0-23 100% | 247.4 MiB/s | 253.3 KiB |  00m00s
[122/192] Installing lz4-libs-0:1.10.0- 100% | 193.8 MiB/s | 198.4 KiB |  00m00s
[123/192] Installing libarchive-0:3.8.9 100% | 238.7 MiB/s | 977.6 KiB |  00m00s
[124/192] Installing libgomp-0:16.2.1-2 100% | 290.2 MiB/s | 594.3 KiB |  00m00s
[125/192] Installing libpkgconf-0:2.5.1 100% | 132.0 MiB/s | 135.2 KiB |  00m00s
[126/192] Installing pkgconf-0:2.5.1-2. 100% |   5.1 MiB/s | 119.3 KiB |  00m00s
[127/192] Installing pkgconf-pkg-config 100% |  77.1 KiB/s |   1.8 KiB |  00m00s
[128/192] Installing libtool-ltdl-0:2.6 100% |  92.8 MiB/s |  95.0 KiB |  00m00s
[129/192] Installing gdbm-libs-1:1.26-1 100% | 115.2 MiB/s | 236.0 KiB |  00m00s
[130/192] Installing cyrus-sasl-lib-0:2 100% |  78.0 MiB/s |   2.4 MiB |  00m00s
[131/192] Installing openldap-0:2.6.15- 100% | 187.8 MiB/s | 769.4 KiB |  00m00s
[132/192] Installing gnupg2-dirmngr-0:2 100% |  21.9 MiB/s | 648.9 KiB |  00m00s
[133/192] Installing gnupg2-0:2.4.9-18. 100% | 146.8 MiB/s |   6.5 MiB |  00m00s
[134/192] Installing gpgverify-0:2.2-5. 100% |   9.2 MiB/s |   9.4 KiB |  00m00s
[135/192] Installing systemd-standalone 100% |  36.8 MiB/s | 979.9 KiB |  00m00s
[136/192] Installing rpm-libs-0:6.1.0-1 100% | 220.1 MiB/s |   1.1 MiB |  00m00s
[137/192] Installing rpm-sign-libs-0:6. 100% |  66.9 MiB/s |  68.5 KiB |  00m00s
[138/192] Installing rpm-build-libs-0:6 100% | 258.6 MiB/s | 264.9 KiB |  00m00s
[139/192] Installing xxhash-libs-0:0.8. 100% |  85.1 MiB/s |  87.2 KiB |  00m00s
[140/192] Installing libbrotli-0:1.2.0- 100% | 222.5 MiB/s | 911.5 KiB |  00m00s
[141/192] Installing libnghttp2-0:1.69. 100% | 194.4 MiB/s | 199.0 KiB |  00m00s
[142/192] Installing libnghttp3-0:1.18. 100% | 203.3 MiB/s | 208.2 KiB |  00m00s
[143/192] Installing keyutils-libs-0:1. 100% |  97.3 MiB/s |  99.7 KiB |  00m00s
[144/192] Installing libcom_err-0:1.47. 100% | 109.6 MiB/s | 112.2 KiB |  00m00s
[145/192] Installing libverto-0:0.3.2-1 100% |  69.5 MiB/s |  71.1 KiB |  00m00s
[146/192] Installing krb5-libs-0:1.22.2 100% | 253.4 MiB/s |   2.5 MiB |  00m00s
[147/192] Installing libcbor-0:0.14.0-3 100% | 137.7 MiB/s | 141.0 KiB |  00m00s
[148/192] Installing libfido2-0:1.17.0- 100% | 137.8 MiB/s | 282.2 KiB |  00m00s
[149/192] Installing libssh-0:0.12.2-1. 100% | 235.5 MiB/s | 723.4 KiB |  00m00s
[150/192] Installing libcurl-0:8.23.0~r 100% | 255.7 MiB/s |   1.0 MiB |  00m00s
[151/192] Installing elfutils-debuginfo 100% |   5.7 MiB/s | 146.3 KiB |  00m00s
[152/192] Installing binutils-0:2.47.50 100% | 272.4 MiB/s |  27.2 MiB |  00m00s
[153/192] Installing elfutils-0:0.196-1 100% | 108.0 MiB/s |   3.8 MiB |  00m00s
[154/192] Installing gdb-minimal-0:17.2 100% | 218.3 MiB/s |  13.5 MiB |  00m00s
[155/192] Installing debugedit-0:5.3-3. 100% |  13.2 MiB/s | 324.2 KiB |  00m00s
[156/192] Installing curl-0:8.23.0~rc2- 100% |  16.1 MiB/s | 528.3 KiB |  00m00s
[157/192] Installing rpm-0:6.1.0-1.fc46 100% |  58.6 MiB/s |   2.8 MiB |  00m00s
[158/192] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0   B |  00m00s
[159/192] Installing efi-srpm-macros-0: 100% |  40.3 MiB/s |  41.3 KiB |  00m00s
[160/192] Installing java-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[161/192] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[162/192] Installing tree-sitter-srpm-m 100% |   9.4 MiB/s |   9.6 KiB |  00m00s
[163/192] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[164/192] Installing filesystem-srpm-ma 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[165/192] Installing rust-srpm-macros-0 100% |   0.0   B/s |   6.4 KiB |  00m00s
[166/192] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 748.0   B |  00m00s
[167/192] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[168/192] Installing perl-srpm-macros-0 100% | 185.5 KiB/s |   1.1 KiB |  00m00s
[169/192] Installing package-notes-srpm 100% |   0.0   B/s |   2.1 KiB |  00m00s
[170/192] Installing openblas-srpm-macr 100% |   0.0   B/s | 404.0   B |  00m00s
[171/192] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.1 KiB |  00m00s
[172/192] Installing meson-srpm-macros- 100% |   0.0   B/s |   1.9 KiB |  00m00s
[173/192] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[174/192] Installing gnome-srpm-macros- 100% |   0.0   B/s |   4.1 KiB |  00m00s
[175/192] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[176/192] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[177/192] Installing gap-srpm-macros-0: 100% |   0.0   B/s |   2.7 KiB |  00m00s
[178/192] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[179/192] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[180/192] Installing redhat-rpm-config- 100% |  93.0 MiB/s | 190.4 KiB |  00m00s
[181/192] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[182/192] Installing rpm-build-0:6.1.0- 100% |  22.6 MiB/s | 626.1 KiB |  00m00s
[183/192] Installing erlang-srpm-macros 100% |   2.5 MiB/s |   2.6 KiB |  00m00s
[184/192] Installing pyproject-srpm-mac 100% |   0.0   B/s |   4.0 KiB |  00m00s
[185/192] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[186/192] Installing go-srpm-macros-0:3 100% |  61.6 MiB/s |  63.0 KiB |  00m00s
[187/192] Installing R-srpm-macros-0:1. 100% |   4.3 MiB/s |   4.4 KiB |  00m00s
[188/192] Installing python-srpm-macros 100% |  51.7 MiB/s |  52.9 KiB |  00m00s
[189/192] Installing rpm-plugin-selinux 100% |  67.3 MiB/s |  68.9 KiB |  00m00s
[190/192] Installing which-0:2.25-2.fc4 100% |   4.9 MiB/s | 125.8 KiB |  00m00s
[191/192] Installing shadow-utils-2:4.2 100% |  94.6 MiB/s |   4.4 MiB |  00m00s
[192/192] Installing info-0:7.3-3.fc45. 100% |  51.5 KiB/s | 424.8 KiB |  00m08s
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: R-srpm-macros-1.3.7-3.fc45.noarch
add-determinism-0.7.3-3.fc45.aarch64
alternatives-1.33-6.fc45.aarch64
ansible-srpm-macros-1-22.fc45.noarch
audit-libs-4.2.1-2.fc45.aarch64
bash-5.3.20-1.fc46.aarch64
binutils-2.47.50-12.fc46.aarch64
build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch
bzip2-1.0.8-24.fc45.aarch64
bzip2-libs-1.0.8-24.fc45.aarch64
ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch
cmake-srpm-macros-4.3.0-5.fc45.noarch
coreutils-9.12-1.fc46.aarch64
coreutils-common-9.12-1.fc46.aarch64
cpio-2.15-10.fc45.aarch64
crypto-policies-20260713-2.gitc42da77.fc45.noarch
curl-8.23.0~rc2-1.fc46.aarch64
cyrus-sasl-lib-2.1.28-37.fc45.aarch64
debugedit-5.3-3.fc45.aarch64
diffutils-3.12-6.fc45.aarch64
dwz-0.17-3.fc45.aarch64
ed-1.22.6-1.fc46.aarch64
efi-srpm-macros-6-9.fc45.noarch
elfutils-0.196-1.fc46.aarch64
elfutils-debuginfod-client-0.196-1.fc46.aarch64
elfutils-libelf-0.196-1.fc46.aarch64
elfutils-libs-0.196-1.fc46.aarch64
erlang-srpm-macros-0.4.0-1.fc46.noarch
fedora-gpg-keys-46-0.3.noarch
fedora-release-46-0.1.noarch
fedora-release-common-46-0.1.noarch
fedora-release-identity-basic-46-0.1.noarch
fedora-repos-46-0.3.noarch
fedora-repos-rawhide-46-0.3.noarch
file-5.48-3.fc46.aarch64
file-libs-5.48-3.fc46.aarch64
filesystem-3.18-59.fc45.aarch64
filesystem-srpm-macros-3.18-59.fc45.noarch
findutils-4.11.0-2.fc45.aarch64
fips-provider-1.5.3-1.fc46.aarch64
fonts-srpm-macros-5.0.0-4.fc45.noarch
forge-srpm-macros-0.4.0-5.fc45.noarch
fpc-srpm-macros-1.3-17.fc45.noarch
gap-srpm-macros-2-3.fc45.noarch
gawk-5.4.1-1.fc45.aarch64
gdb-minimal-17.2-6.fc46.aarch64
gdbm-libs-1.26-1.fc46.aarch64
ghc-srpm-macros-1.10-2.fc45.noarch
glibc-2.44.9000-4.fc46.aarch64
glibc-common-2.44.9000-4.fc46.aarch64
glibc-gconv-extra-2.44.9000-4.fc46.aarch64
glibc-minimal-langpack-2.44.9000-4.fc46.aarch64
gmp-6.3.0-6.fc45.aarch64
gnat-srpm-macros-7-3.fc45.noarch
gnome-srpm-macros-1.0-2.fc45.noarch
gnulib-l10n-20241231-4.fc45.noarch
gnupg2-2.4.9-18.fc45.aarch64
gnupg2-dirmngr-2.4.9-18.fc45.aarch64
gnupg2-gpg-agent-2.4.9-18.fc45.aarch64
gnupg2-gpgconf-2.4.9-18.fc45.aarch64
gnupg2-keyboxd-2.4.9-18.fc45.aarch64
gnupg2-verify-2.4.9-18.fc45.aarch64
gnutls-3.8.13-5.fc46.aarch64
go-srpm-macros-3.8.0-3.fc45.noarch
gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98
gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4
gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899
gpgverify-2.2-5.fc45.noarch
grep-3.12-4.fc45.aarch64
gzip-1.14-4.fc45.aarch64
ima-evm-utils-libs-1.6.2-12.fc45.aarch64
info-7.3-3.fc45.aarch64
jansson-2.14-5.fc45.aarch64
java-srpm-macros-1-9.fc45.noarch
json-c-0.18-9.fc45.aarch64
kernel-srpm-macros-1.0-30.fc45.noarch
keyutils-libs-1.6.3-8.fc45.aarch64
krb5-libs-1.22.2-9.fc45.aarch64
libacl-2.4.0-2.fc45.aarch64
libarchive-3.8.9-2.fc46.aarch64
libassuan-2.5.7-6.fc45.aarch64
libattr-2.6.0-2.fc45.aarch64
libblkid-2.42.4-2.fc46.aarch64
libbrotli-1.2.0-6.fc45.aarch64
libcap-2.78-2.fc45.aarch64
libcap-ng-0.9.6-1.fc46.aarch64
libcbor-0.14.0-3.fc45.aarch64
libcom_err-1.47.4-2.fc45.aarch64
libcurl-8.23.0~rc2-1.fc46.aarch64
libeconf-0.7.9-4.fc45.aarch64
libevent-2.1.13-1.fc46.aarch64
libfdisk-2.42.4-2.fc46.aarch64
libffi-3.8.0-1.fc46.aarch64
libfido2-1.17.0-6.fc46.aarch64
libfsverity-1.7-4.fc45.aarch64
libgcc-16.2.1-2.fc46.1.aarch64
libgcrypt-1.12.4-1.fc46.aarch64
libgomp-16.2.1-2.fc46.1.aarch64
libgpg-error-1.61-2.fc45.aarch64
libidn2-2.3.8-4.fc45.aarch64
libksba-1.8.1-1.fc46.aarch64
liblastlog2-2.42.4-2.fc46.aarch64
libmount-2.42.4-2.fc46.aarch64
libnghttp2-1.69.0-6.fc46.aarch64
libnghttp3-1.18.0-1.fc45.aarch64
libpfm-4.13.0-23.fc45.aarch64
libpkgconf-2.5.1-2.fc45.aarch64
libpsl-0.23.3-1.fc46.aarch64
libselinux-3.11-5.fc46.aarch64
libselinux-utils-3.11-5.fc46.aarch64
libsemanage-3.11-4.fc46.aarch64
libsepol-3.11-2.fc45.aarch64
libsmartcols-2.42.4-2.fc46.aarch64
libssh-0.12.2-1.fc45.aarch64
libssh-config-0.12.2-1.fc45.noarch
libstdc++-16.2.1-2.fc46.1.aarch64
libtasn1-4.21.0-2.fc45.aarch64
libtool-ltdl-2.6.2-1.fc46.aarch64
libunistring-1.1-12.fc45.aarch64
libusb1-1.0.30-2.fc45.aarch64
libuuid-2.42.4-2.fc46.aarch64
libverto-0.3.2-13.fc45.aarch64
libxcrypt-4.5.2-4.fc45.aarch64
libxml2-2.15.4-1.fc46.aarch64
libzstd-1.5.7-6.fc45.aarch64
linkdupes-0.7.3-3.fc45.aarch64
lua-libs-5.5.1-2.fc46.aarch64
lua-srpm-macros-1-18.fc45.noarch
lz4-libs-1.10.0-5.fc45.aarch64
meson-srpm-macros-1.12.1-2.fc46.noarch
mpfr-4.2.2-4.fc45.aarch64
ncurses-base-6.6-3.fc45.noarch
ncurses-libs-6.6-3.fc45.aarch64
nettle-4.0-5.fc45.aarch64
ngtcp2-1.22.1-3.fc45.aarch64
ngtcp2-crypto-ossl-1.22.1-3.fc45.aarch64
npth-1.8-5.fc45.aarch64
ocaml-srpm-macros-11-4.fc45.noarch
openblas-srpm-macros-2-23.fc46.noarch
openldap-2.6.15-1.fc46.aarch64
openssl-libs-4.0.3-1.fc46.aarch64
p11-kit-0.26.5-1.fc45.aarch64
p11-kit-trust-0.26.5-1.fc45.aarch64
package-notes-srpm-macros-0.20-2.fc45.noarch
pam-libs-1.7.2-4.fc45.aarch64
patch-2.8-6.fc46.aarch64
pcre2-10.47-1.fc45.2.aarch64
pcre2-syntax-10.47-1.fc45.2.noarch
perl-srpm-macros-1-65.fc45.noarch
pkgconf-2.5.1-2.fc45.aarch64
pkgconf-m4-2.5.1-2.fc45.noarch
pkgconf-pkg-config-2.5.1-2.fc45.aarch64
policycoreutils-3.11-2.fc45.aarch64
popt-1.19-11.fc45.aarch64
publicsuffix-list-dafsa-20260624-2.fc45.noarch
pyproject-srpm-macros-1.23.2-1.fc45.noarch
python-srpm-macros-3.15-2.fc45.noarch
qt5-srpm-macros-5.15.18-3.fc45.noarch
qt6-srpm-macros-6.11.2-1.fc46.noarch
readline-8.3-7.fc46.aarch64
redhat-rpm-config-345-4.fc46.noarch
redhat-systemd-presets-102-3.fc45.noarch
redhat-systemd-presets-common-102-3.fc45.noarch
rpm-6.1.0-1.fc46.aarch64
rpm-build-6.1.0-1.fc46.aarch64
rpm-build-libs-6.1.0-1.fc46.aarch64
rpm-libs-6.1.0-1.fc46.aarch64
rpm-plugin-selinux-6.1.0-1.fc46.aarch64
rpm-sequoia-1.10.3-1.fc46.aarch64
rpm-sign-libs-6.1.0-1.fc46.aarch64
rust-srpm-macros-28.5-2.fc45.noarch
sed-4.10-2.fc45.aarch64
selinux-policy-45.21-1.fc46.noarch
selinux-policy-targeted-45.21-1.fc46.noarch
setup-2.15.1-2.fc45.noarch
shadow-utils-4.20.0-1.fc45.aarch64
sqlite-libs-3.53.4-1.fc45.aarch64
systemd-libs-262-3.fc46.aarch64
systemd-standalone-sysusers-262-3.fc46.aarch64
tar-1.35-9.fc45.aarch64
tpm2-tss-4.2.0-1.fc45.aarch64
tree-sitter-srpm-macros-0.4.6-2.fc45.noarch
unzip-6.0-71.fc45.aarch64
util-linux-2.42.4-2.fc46.aarch64
util-linux-core-2.42.4-2.fc46.aarch64
which-2.25-2.fc45.aarch64
xxhash-libs-0.8.4-1.fc46.aarch64
xz-5.8.4-1.fc46.aarch64
xz-libs-5.8.4-1.fc46.aarch64
zig-srpm-macros-1-9.fc45.noarch
zip-3.0-46.fc45.aarch64
zlib-ng-compat-2.3.3-6.fc45.aarch64
zstd-1.5.7-6.fc45.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1791331200
Wrote: /builddir/build/SRPMS/cat-surface-1.0.28-1.fc46.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1791479665.296469/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-c_xtbhov/cat-surface/cat-surface.spec) Config(child) 0 minutes 36 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/cat-surface-1.0.28-1.fc46.src.rpm)  Config(fedora-rawhide-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791479665.296469/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1791479665.296469/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1791479665.296469/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-6.1.0-1.fc46.aarch64
  rpm-sequoia-1.10.3-1.fc46.aarch64
  dnf5-5.4.6.0-1.fc46.aarch64
  dnf5-plugins-5.4.6.0-1.fc46.aarch64
Finish: chroot init
Start: build phase for cat-surface-1.0.28-1.fc46.src.rpm
Start: build setup for cat-surface-1.0.28-1.fc46.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1791331200
Wrote: /builddir/build/SRPMS/cat-surface-1.0.28-1.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% | 177.2 KiB/s |   9.7 KiB |  00m00s
 Copr repository                        100% | 170.1 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "pkgconf-pkg-config-2.5.1-2.fc45.aarch64" is already installed.

Package                 Arch    Version               Repository      Size
Installing:
 autoconf               noarch  0:2.73-4.fc45         fedora       2.9 MiB
 automake               noarch  0:1.18.1-5.fc45       fedora       1.8 MiB
 expat-devel            aarch64 0:2.8.3-1.fc46        fedora     236.0 KiB
 fftw-devel             aarch64 0:3.3.10-18.fc45      fedora     282.2 KiB
 gcc                    aarch64 0:16.2.1-2.fc46.1     fedora     112.5 MiB
 gifticlib-devel        aarch64 0:1.0.9-30.fc44       fedora      22.2 KiB
 libtool                aarch64 0:2.6.2-1.fc46        fedora       2.8 MiB
 make                   aarch64 1:4.4.1-13.fc45       fedora       1.8 MiB
 nifticlib-devel        aarch64 0:3.0.1-6.fc45        fedora     229.2 KiB
 python3                aarch64 0:3.15.0~rc3-2.fc46   fedora      84.8 KiB
 zlib-ng-compat-devel   aarch64 0:2.3.3-6.fc45        fedora     107.0 KiB
Installing dependencies:
 annobin-docs           noarch  0:13.32-1.fc46        fedora      99.7 KiB
 annobin-plugin-gcc     aarch64 0:13.32-1.fc46        fedora     736.6 KiB
 cmake-filesystem       aarch64 0:4.3.0-5.fc45        fedora       0.0   B
 cpp                    aarch64 0:16.2.1-2.fc46.1     fedora      40.8 MiB
 emacs-filesystem       aarch64 1:31.1-1.fc46         fedora       0.0   B
 expat                  aarch64 0:2.8.3-1.fc46        fedora     378.4 KiB
 fftw                   aarch64 0:3.3.10-18.fc45      fedora     221.0 KiB
 fftw-libs              aarch64 0:3.3.10-18.fc45      fedora       0.0   B
 fftw-libs-double       aarch64 0:3.3.10-18.fc45      fedora       1.8 MiB
 fftw-libs-long         aarch64 0:3.3.10-18.fc45      fedora       2.3 MiB
 fftw-libs-single       aarch64 0:3.3.10-18.fc45      fedora       1.9 MiB
 gcc-plugin-annobin     aarch64 0:16.2.1-2.fc46.1     fedora      69.1 KiB
 gettext                aarch64 0:1.0-4.fc46          fedora      18.5 MiB
 gettext-common-devel   noarch  0:1.0-4.fc46          fedora     596.2 KiB
 gettext-devel          aarch64 0:1.0-4.fc46          fedora       1.4 MiB
 gettext-envsubst       aarch64 0:1.0-4.fc46          fedora     106.6 KiB
 gettext-libs           aarch64 0:1.0-4.fc46          fedora       2.3 MiB
 gettext-runtime        aarch64 0:1.0-4.fc46          fedora     784.2 KiB
 gifticlib              aarch64 0:1.0.9-30.fc44       fedora     332.8 KiB
 glibc-devel            aarch64 0:2.44.9000-4.fc46    fedora       2.3 MiB
 groff-base             aarch64 0:1.24.2-1.fc46       fedora       4.5 MiB
 kernel-headers         aarch64 0:7.3.0-0.rc6.51.fc46 fedora       6.9 MiB
 libasan                aarch64 0:16.2.1-2.fc46.1     fedora       1.5 MiB
 libatomic              aarch64 0:16.2.1-2.fc46.1     fedora      77.7 KiB
 libmpc                 aarch64 0:1.4.1-2.fc45        fedora     216.8 KiB
 libtextstyle           aarch64 0:1.0-4.fc46          fedora     199.1 KiB
 libubsan               aarch64 0:16.2.1-2.fc46.1     fedora     475.9 KiB
 libxcrypt-devel        aarch64 0:4.5.2-4.fc45        fedora      31.0 KiB
 m4                     aarch64 0:1.4.21-3.fc45       fedora     888.6 KiB
 mpdecimal              aarch64 0:4.0.1-4.fc45        fedora     281.1 KiB
 ncurses                aarch64 0:6.6-3.fc45          fedora     895.8 KiB
 nifticlib              aarch64 0:3.0.1-6.fc45        fedora       1.1 MiB
 perl-AutoLoader        noarch  0:5.74-527.fc45       fedora      20.6 KiB
 perl-B                 aarch64 0:1.92-527.fc45       fedora     557.5 KiB
 perl-Carp              noarch  0:1.54-527.fc45       fedora      46.6 KiB
 perl-Class-Struct      noarch  0:0.68-527.fc45       fedora      25.4 KiB
 perl-Data-Dumper       aarch64 0:2.192-528.fc45      fedora     135.5 KiB
 perl-Digest            noarch  0:1.20-527.fc45       fedora      35.2 KiB
 perl-Digest-MD5        aarch64 0:2.59-527.fc45       fedora     103.6 KiB
 perl-DynaLoader        aarch64 0:1.57-527.fc45       fedora      32.1 KiB
 perl-Encode            aarch64 4:3.24-527.fc45       fedora       4.8 MiB
 perl-Errno             aarch64 0:1.39-527.fc45       fedora       8.4 KiB
 perl-Exporter          noarch  0:5.79-527.fc45       fedora      54.2 KiB
 perl-Fcntl             aarch64 0:1.20-527.fc45       fedora      92.7 KiB
 perl-File-Basename     noarch  0:2.86-527.fc45       fedora      14.0 KiB
 perl-File-Compare      noarch  0:1.100.800-527.fc45  fedora       5.6 KiB
 perl-File-Copy         noarch  0:2.43-527.fc45       fedora      19.6 KiB
 perl-File-Find         noarch  0:1.44-527.fc45       fedora      42.0 KiB
 perl-File-Path         noarch  0:2.18-527.fc45       fedora      63.4 KiB
 perl-File-Temp         noarch  1:0.231.200-527.fc45  fedora     163.7 KiB
 perl-File-stat         noarch  0:1.15-527.fc45       fedora      13.7 KiB
 perl-FileHandle        noarch  0:2.05-527.fc45       fedora       9.4 KiB
 perl-Getopt-Long       noarch  1:2.58-527.fc45       fedora     144.5 KiB
 perl-Getopt-Std        noarch  0:1.15-527.fc45       fedora      12.5 KiB
 perl-HTTP-Tiny         noarch  0:0.096-528.fc45      fedora     162.4 KiB
 perl-IO                aarch64 0:1.56-527.fc45       fedora     191.3 KiB
 perl-IO-Socket-IP      noarch  0:0.44-527.fc45       fedora     100.5 KiB
 perl-IO-Socket-SSL     noarch  0:2.099-2.fc45        fedora     726.9 KiB
 perl-IPC-Open3         noarch  0:1.24-527.fc45       fedora      27.7 KiB
 perl-MIME-Base32       noarch  0:1.303-26.fc45       fedora      30.7 KiB
 perl-MIME-Base64       aarch64 0:3.16-527.fc45       fedora      93.9 KiB
 perl-Net-SSLeay        aarch64 0:1.96-5.fc45         fedora       1.4 MiB
 perl-POSIX             aarch64 0:2.26-527.fc45       fedora     261.4 KiB
 perl-PathTools         aarch64 0:3.95-527.fc45       fedora     224.0 KiB
 perl-Pod-Escapes       noarch  1:1.07-527.fc45       fedora      24.9 KiB
 perl-Pod-Perldoc       noarch  0:3.28.01-527.fc45    fedora     163.8 KiB
 perl-Pod-Simple        noarch  1:3.48-527.fc45       fedora     565.2 KiB
 perl-Pod-Usage         noarch  4:2.05-527.fc45       fedora      86.3 KiB
 perl-Scalar-List-Utils aarch64 5:1.70-527.fc45       fedora     152.9 KiB
 perl-SelectSaver       noarch  0:1.03-527.fc45       fedora       2.1 KiB
 perl-Socket            aarch64 4:2.043-1.fc46        fedora     145.8 KiB
 perl-Storable          aarch64 1:3.41-527.fc45       fedora     242.9 KiB
 perl-Symbol            noarch  0:1.09-527.fc45       fedora       6.8 KiB
 perl-Term-ANSIColor    noarch  0:5.01-527.fc45       fedora      97.5 KiB
 perl-Term-Cap          noarch  0:1.18-527.fc45       fedora      29.3 KiB
 perl-Text-ParseWords   noarch  0:3.31-527.fc45       fedora      13.6 KiB
 perl-Text-Tabs+Wrap    noarch  0:2024.001-527.fc45   fedora      22.6 KiB
 perl-Thread-Queue      noarch  0:3.14-527.fc45       fedora      28.9 KiB
 perl-Time-HiRes        aarch64 4:1.9780-527.fc45     fedora     151.7 KiB
 perl-Time-Local        noarch  2:1.350-527.fc45      fedora      69.0 KiB
 perl-URI               noarch  0:5.37-1.fc46         fedora     275.5 KiB
 perl-Unicode-Normalize aarch64 0:1.32-527.fc45       fedora     524.5 KiB
 perl-base              noarch  0:2.27-527.fc45       fedora      12.6 KiB
 perl-constant          noarch  0:1.33-528.fc45       fedora      26.3 KiB
 perl-if                noarch  0:0.61.000-527.fc45   fedora       5.8 KiB
 perl-interpreter       aarch64 4:5.44.0-527.fc45     fedora     175.8 KiB
 perl-libnet            noarch  0:3.15-528.fc45       fedora     288.4 KiB
 perl-libs              aarch64 4:5.44.0-527.fc45     fedora      12.0 MiB
 perl-locale            noarch  0:1.13-527.fc45       fedora       6.1 KiB
 perl-mro               aarch64 0:1.30-527.fc45       fedora      81.5 KiB
 perl-overload          noarch  0:1.40-527.fc45       fedora      71.6 KiB
 perl-overloading       noarch  0:0.03-527.fc45       fedora       4.8 KiB
 perl-parent            noarch  1:0.244-527.fc45      fedora      10.3 KiB
 perl-podlators         noarch  1:6.1.1-1.fc46        fedora     327.2 KiB
 perl-threads           aarch64 1:2.45-527.fc45       fedora     134.9 KiB
 perl-threads-shared    aarch64 0:1.73-527.fc45       fedora     103.6 KiB
 perl-vars              noarch  0:1.05-527.fc45       fedora       3.9 KiB
 python-pip-wheel       noarch  0:26.2.1-1.fc46       fedora       1.3 MiB
 python3-libs           aarch64 0:3.15.0~rc3-2.fc46   fedora      49.8 MiB
 tzdata                 noarch  0:2026e-1.fc46        fedora       1.3 MiB

Transaction Summary:
 Installing:       111 packages

Total size of inbound packages is 89 MiB. Need to download 89 MiB.
After this operation, 292 MiB extra will be used (install 292 MiB, remove 0 B).
[  1/111] automake-0:1.18.1-5.fc45.noar 100% |   8.0 MiB/s | 723.9 KiB |  00m00s
[  2/111] expat-devel-0:2.8.3-1.fc46.aa 100% | 621.7 KiB/s |  56.0 KiB |  00m00s
[  3/111] fftw-devel-0:3.3.10-18.fc45.a 100% |   2.3 MiB/s | 132.3 KiB |  00m00s
[  4/111] gifticlib-devel-0:1.0.9-30.fc 100% | 357.9 KiB/s |  14.0 KiB |  00m00s
[  5/111] autoconf-0:2.73-4.fc45.noarch 100% |   3.8 MiB/s | 848.1 KiB |  00m00s
[  6/111] make-1:4.4.1-13.fc45.aarch64  100% |  19.0 MiB/s | 583.4 KiB |  00m00s
[  7/111] libtool-0:2.6.2-1.fc46.aarch6 100% |   7.0 MiB/s | 638.0 KiB |  00m00s
[  8/111] python3-0:3.15.0~rc3-2.fc46.a 100% |   1.4 MiB/s |  27.8 KiB |  00m00s
[  9/111] nifticlib-devel-0:3.0.1-6.fc4 100% |   1.3 MiB/s |  58.0 KiB |  00m00s
[ 10/111] gcc-0:16.2.1-2.fc46.1.aarch64 100% | 150.0 MiB/s |  39.9 MiB |  00m00s
[ 11/111] zlib-ng-compat-devel-0:2.3.3- 100% | 600.0 KiB/s |  37.8 KiB |  00m00s
[ 12/111] emacs-filesystem-1:31.1-1.fc4 100% | 170.3 KiB/s |   8.2 KiB |  00m00s
[ 13/111] perl-Carp-0:1.54-527.fc45.noa 100% |   1.9 MiB/s |  28.6 KiB |  00m00s
[ 14/111] perl-Class-Struct-0:0.68-527. 100% | 805.8 KiB/s |  21.8 KiB |  00m00s
[ 15/111] gettext-devel-0:1.0-4.fc46.aa 100% |   4.8 MiB/s | 299.1 KiB |  00m00s
[ 16/111] perl-Data-Dumper-0:2.192-528. 100% |   3.4 MiB/s |  55.0 KiB |  00m00s
[ 17/111] perl-Exporter-0:5.79-527.fc45 100% |   2.0 MiB/s |  30.6 KiB |  00m00s
[ 18/111] perl-Errno-0:1.39-527.fc45.aa 100% | 561.5 KiB/s |  14.6 KiB |  00m00s
[ 19/111] m4-0:1.4.21-3.fc45.aarch64    100% |   3.7 MiB/s | 340.4 KiB |  00m00s
[ 20/111] perl-File-Compare-0:1.100.800 100% | 808.1 KiB/s |  12.9 KiB |  00m00s
[ 21/111] perl-File-Copy-0:2.43-527.fc4 100% |   1.2 MiB/s |  19.7 KiB |  00m00s
[ 22/111] perl-File-Basename-0:2.86-527 100% | 647.8 KiB/s |  16.8 KiB |  00m00s
[ 23/111] perl-File-Temp-1:0.231.200-52 100% |   3.4 MiB/s |  59.3 KiB |  00m00s
[ 24/111] perl-File-stat-0:1.15-527.fc4 100% |   1.1 MiB/s |  17.2 KiB |  00m00s
[ 25/111] perl-File-Find-0:1.44-527.fc4 100% | 834.0 KiB/s |  25.0 KiB |  00m00s
[ 26/111] perl-Getopt-Long-1:2.58-527.f 100% |   4.1 MiB/s |  63.2 KiB |  00m00s
[ 27/111] perl-IO-0:1.56-527.fc45.aarch 100% |   5.1 MiB/s |  83.0 KiB |  00m00s
[ 28/111] perl-POSIX-0:2.26-527.fc45.aa 100% |   5.9 MiB/s |  96.5 KiB |  00m00s
[ 29/111] perl-PathTools-0:3.95-527.fc4 100% |   5.4 MiB/s |  88.0 KiB |  00m00s
[ 30/111] perl-Text-ParseWords-0:3.31-5 100% |   1.1 MiB/s |  16.2 KiB |  00m00s
[ 31/111] perl-constant-0:1.33-528.fc45 100% |   1.2 MiB/s |  22.7 KiB |  00m00s
[ 32/111] perl-interpreter-4:5.44.0-527 100% |   4.4 MiB/s |  72.8 KiB |  00m00s
[ 33/111] perl-Thread-Queue-0:3.14-527. 100% |   1.0 MiB/s |  21.0 KiB |  00m00s
[ 34/111] perl-File-Path-0:2.18-527.fc4 100% |   1.1 MiB/s |  34.8 KiB |  00m00s
[ 35/111] perl-threads-1:2.45-527.fc45. 100% |   2.3 MiB/s |  56.7 KiB |  00m00s
[ 36/111] expat-0:2.8.3-1.fc46.aarch64  100% |   7.8 MiB/s | 127.2 KiB |  00m00s
[ 37/111] fftw-libs-0:3.3.10-18.fc45.aa 100% | 432.3 KiB/s |   7.3 KiB |  00m00s
[ 38/111] fftw-0:3.3.10-18.fc45.aarch64 100% |   1.8 MiB/s |  39.9 KiB |  00m00s
[ 39/111] glibc-devel-0:2.44.9000-4.fc4 100% |  19.8 MiB/s | 668.3 KiB |  00m00s
[ 40/111] libasan-0:16.2.1-2.fc46.1.aar 100% |  15.3 MiB/s | 516.1 KiB |  00m00s
[ 41/111] cpp-0:16.2.1-2.fc46.1.aarch64 100% | 144.7 MiB/s |  13.3 MiB |  00m00s
[ 42/111] libatomic-0:16.2.1-2.fc46.1.a 100% |   1.9 MiB/s |  55.6 KiB |  00m00s
[ 43/111] libmpc-0:1.4.1-2.fc45.aarch64 100% |   4.5 MiB/s |  73.8 KiB |  00m00s
[ 44/111] libubsan-0:16.2.1-2.fc46.1.aa 100% |  13.1 MiB/s | 228.1 KiB |  00m00s
[ 45/111] cmake-filesystem-0:4.3.0-5.fc 100% | 928.6 KiB/s |  14.9 KiB |  00m00s
[ 46/111] gifticlib-0:1.0.9-30.fc44.aar 100% |   1.7 MiB/s |  90.4 KiB |  00m00s
[ 47/111] nifticlib-0:3.0.1-6.fc45.aarc 100% |   2.6 MiB/s | 247.7 KiB |  00m00s
[ 48/111] python3-libs-0:3.15.0~rc3-2.f 100% | 109.2 MiB/s |  10.9 MiB |  00m00s
[ 49/111] perl-libs-4:5.44.0-527.fc45.a 100% |   7.2 MiB/s |   2.6 MiB |  00m00s
[ 50/111] gettext-0:1.0-4.fc46.aarch64  100% |  35.8 MiB/s |   2.0 MiB |  00m00s
[ 51/111] gettext-common-devel-0:1.0-4. 100% |  23.7 MiB/s | 605.5 KiB |  00m00s
[ 52/111] perl-Scalar-List-Utils-5:1.70 100% |   4.5 MiB/s |  73.7 KiB |  00m00s
[ 53/111] gettext-libs-0:1.0-4.fc46.aar 100% |  26.9 MiB/s | 798.9 KiB |  00m00s
[ 54/111] perl-B-0:1.92-527.fc45.aarch6 100% |   5.4 MiB/s | 182.1 KiB |  00m00s
[ 55/111] perl-Fcntl-0:1.20-527.fc45.aa 100% |   1.8 MiB/s |  29.5 KiB |  00m00s
[ 56/111] perl-parent-1:0.244-527.fc45. 100% | 982.0 KiB/s |  14.7 KiB |  00m00s
[ 57/111] perl-Symbol-0:1.09-527.fc45.n 100% | 925.9 KiB/s |  13.9 KiB |  00m00s
[ 58/111] perl-overload-0:1.40-527.fc45 100% |   1.3 MiB/s |  45.2 KiB |  00m00s
[ 59/111] perl-base-0:2.27-527.fc45.noa 100% | 993.5 KiB/s |  15.9 KiB |  00m00s
[ 60/111] perl-SelectSaver-0:1.03-527.f 100% | 756.1 KiB/s |  11.3 KiB |  00m00s
[ 61/111] perl-Pod-Usage-4:2.05-527.fc4 100% |   1.2 MiB/s |  40.4 KiB |  00m00s
[ 62/111] perl-Socket-4:2.043-1.fc46.aa 100% |   3.4 MiB/s |  55.4 KiB |  00m00s
[ 63/111] perl-locale-0:1.13-527.fc45.n 100% | 879.0 KiB/s |  13.2 KiB |  00m00s
[ 64/111] perl-vars-0:1.05-527.fc45.noa 100% | 844.6 KiB/s |  12.7 KiB |  00m00s
[ 65/111] perl-DynaLoader-0:1.57-527.fc 100% |   1.4 MiB/s |  25.6 KiB |  00m00s
[ 66/111] perl-threads-shared-0:1.73-52 100% |   2.7 MiB/s |  43.9 KiB |  00m00s
[ 67/111] fftw-libs-long-0:3.3.10-18.fc 100% |   6.5 MiB/s | 720.4 KiB |  00m00s
[ 68/111] fftw-libs-double-0:3.3.10-18. 100% |   4.6 MiB/s | 667.9 KiB |  00m00s
[ 69/111] kernel-headers-0:7.3.0-0.rc6. 100% |  45.5 MiB/s |   1.7 MiB |  00m00s
[ 70/111] fftw-libs-single-0:3.3.10-18. 100% |  11.2 MiB/s | 691.0 KiB |  00m00s
[ 71/111] libxcrypt-devel-0:4.5.2-4.fc4 100% |   1.9 MiB/s |  30.4 KiB |  00m00s
[ 72/111] mpdecimal-0:4.0.1-4.fc45.aarc 100% |   5.8 MiB/s |  95.4 KiB |  00m00s
[ 73/111] perl-Encode-4:3.24-527.fc45.a 100% |   4.4 MiB/s |   1.0 MiB |  00m00s
[ 74/111] python-pip-wheel-0:26.2.1-1.f 100% |  45.9 MiB/s |   1.2 MiB |  00m00s
[ 75/111] tzdata-0:2026e-1.fc46.noarch  100% |  29.0 MiB/s | 713.6 KiB |  00m00s
[ 76/111] gettext-runtime-0:1.0-4.fc46. 100% |   7.5 MiB/s | 176.2 KiB |  00m00s
[ 77/111] libtextstyle-0:1.0-4.fc46.aar 100% |   5.2 MiB/s |  90.2 KiB |  00m00s
[ 78/111] perl-if-0:0.61.000-527.fc45.n 100% | 855.2 KiB/s |  13.7 KiB |  00m00s
[ 79/111] perl-mro-0:1.30-527.fc45.aarc 100% |   1.8 MiB/s |  28.9 KiB |  00m00s
[ 80/111] perl-Pod-Perldoc-0:3.28.01-52 100% |   5.2 MiB/s |  84.7 KiB |  00m00s
[ 81/111] perl-Getopt-Std-0:1.15-527.fc 100% | 959.8 KiB/s |  15.4 KiB |  00m00s
[ 82/111] perl-podlators-1:6.1.1-1.fc46 100% |   8.1 MiB/s | 132.4 KiB |  00m00s
[ 83/111] perl-MIME-Base64-0:3.16-527.f 100% |   1.8 MiB/s |  29.8 KiB |  00m00s
[ 84/111] perl-Storable-1:3.41-527.fc45 100% |   5.8 MiB/s |  95.7 KiB |  00m00s
[ 85/111] perl-overloading-0:0.03-527.f 100% | 195.8 KiB/s |  12.5 KiB |  00m00s
[ 86/111] gettext-envsubst-0:1.0-4.fc46 100% |   2.3 MiB/s |  37.4 KiB |  00m00s
[ 87/111] groff-base-0:1.24.2-1.fc46.aa 100% |  53.6 MiB/s |   1.2 MiB |  00m00s
[ 88/111] perl-IPC-Open3-0:1.24-527.fc4 100% |   1.5 MiB/s |  23.7 KiB |  00m00s
[ 89/111] perl-Pod-Simple-1:3.48-527.fc 100% |  13.6 MiB/s | 222.0 KiB |  00m00s
[ 90/111] perl-Term-ANSIColor-0:5.01-52 100% |   2.9 MiB/s |  47.3 KiB |  00m00s
[ 91/111] perl-Term-Cap-0:1.18-527.fc45 100% |   1.4 MiB/s |  21.7 KiB |  00m00s
[ 92/111] perl-IO-Socket-SSL-0:2.099-2. 100% |  13.6 MiB/s | 236.2 KiB |  00m00s
[ 93/111] perl-HTTP-Tiny-0:0.096-528.fc 100% | 956.6 KiB/s |  58.4 KiB |  00m00s
[ 94/111] perl-Time-HiRes-4:1.9780-527. 100% |   3.5 MiB/s |  57.2 KiB |  00m00s
[ 95/111] perl-Time-Local-2:1.350-527.f 100% |   2.1 MiB/s |  34.2 KiB |  00m00s
[ 96/111] perl-Pod-Escapes-1:1.07-527.f 100% |   1.1 MiB/s |  19.6 KiB |  00m00s
[ 97/111] perl-Text-Tabs+Wrap-0:2024.00 100% |   1.3 MiB/s |  21.5 KiB |  00m00s
[ 98/111] ncurses-0:6.6-3.fc45.aarch64  100% |  23.3 MiB/s | 428.8 KiB |  00m00s
[ 99/111] perl-IO-Socket-IP-0:0.44-527. 100% |   2.6 MiB/s |  42.0 KiB |  00m00s
[100/111] perl-Net-SSLeay-0:1.96-5.fc45 100% |   5.2 MiB/s | 378.8 KiB |  00m00s
[101/111] perl-AutoLoader-0:5.74-527.fc 100% |   1.4 MiB/s |  20.9 KiB |  00m00s
[102/111] perl-URI-0:5.37-1.fc46.noarch 100% |   6.4 MiB/s | 151.0 KiB |  00m00s
[103/111] perl-MIME-Base32-0:1.303-26.f 100% |   1.3 MiB/s |  20.4 KiB |  00m00s
[104/111] perl-libnet-0:3.15-528.fc45.n 100% |   7.8 MiB/s | 128.3 KiB |  00m00s
[105/111] perl-Digest-MD5-0:2.59-527.fc 100% |   2.3 MiB/s |  35.5 KiB |  00m00s
[106/111] perl-FileHandle-0:2.05-527.fc 100% |   1.0 MiB/s |  15.2 KiB |  00m00s
[107/111] perl-Digest-0:1.20-527.fc45.n 100% |   1.6 MiB/s |  24.8 KiB |  00m00s
[108/111] gcc-plugin-annobin-0:16.2.1-2 100% |   3.6 MiB/s |  59.2 KiB |  00m00s
[109/111] annobin-plugin-gcc-0:13.32-1. 100% |  36.5 MiB/s | 710.0 KiB |  00m00s
[110/111] annobin-docs-0:13.32-1.fc46.n 100% |   5.3 MiB/s |  87.1 KiB |  00m00s
[111/111] perl-Unicode-Normalize-0:1.32 100% | 924.5 KiB/s |  72.1 KiB |  00m00s
--------------------------------------------------------------------------------
[111/111] Total                         100% |  58.9 MiB/s |  88.7 MiB |  00m02s
Running transaction
[  1/113] Verify package files          100% | 384.0   B/s | 111.0   B |  00m00s
[  2/113] Prepare transaction           100% |   1.5 KiB/s | 111.0   B |  00m00s
[  3/113] Installing expat-0:2.8.3-1.fc 100% |  14.3 MiB/s | 380.4 KiB |  00m00s
[  4/113] Installing libtextstyle-0:1.0 100% |  97.6 MiB/s | 199.9 KiB |  00m00s
[  5/113] Installing gettext-libs-0:1.0 100% | 286.2 MiB/s |   2.3 MiB |  00m00s
[  6/113] Installing fftw-libs-single-0 100% | 265.4 MiB/s |   1.9 MiB |  00m00s
[  7/113] Installing fftw-libs-long-0:3 100% | 286.8 MiB/s |   2.3 MiB |  00m00s
[  8/113] Installing fftw-libs-double-0 100% | 256.5 MiB/s |   1.8 MiB |  00m00s
[  9/113] Installing cmake-filesystem-0 100% |   4.6 MiB/s |   9.4 KiB |  00m00s
[ 10/113] Installing libmpc-0:1.4.1-2.f 100% | 106.7 MiB/s | 218.5 KiB |  00m00s
[ 11/113] Installing cpp-0:16.2.1-2.fc4 100% | 275.6 MiB/s |  40.8 MiB |  00m00s
[ 12/113] Installing nifticlib-devel-0: 100% | 113.4 MiB/s | 232.1 KiB |  00m00s
[ 13/113] Installing nifticlib-0:3.0.1- 100% |  39.3 MiB/s |   1.1 MiB |  00m00s
[ 14/113] Installing gifticlib-0:1.0.9- 100% |  13.6 MiB/s | 335.0 KiB |  00m00s
[ 15/113] Installing fftw-0:3.3.10-18.f 100% |   9.1 MiB/s | 223.3 KiB |  00m00s
[ 16/113] Installing fftw-libs-0:3.3.10 100% |   0.0   B/s | 124.0   B |  00m00s
[ 17/113] Installing annobin-docs-0:13. 100% |  98.5 MiB/s | 100.8 KiB |  00m00s
[ 18/113] Installing ncurses-0:6.6-3.fc 100% |  27.5 MiB/s | 902.4 KiB |  00m00s
[ 19/113] Installing groff-base-0:1.24. 100% |  93.9 MiB/s |   4.5 MiB |  00m00s
[ 20/113] Installing perl-Digest-0:1.20 100% |  36.1 MiB/s |  37.0 KiB |  00m00s
[ 21/113] Installing perl-Digest-MD5-0: 100% | 103.0 MiB/s | 105.5 KiB |  00m00s
[ 22/113] Installing perl-FileHandle-0: 100% |   9.6 MiB/s |   9.8 KiB |  00m00s
[ 23/113] Installing perl-B-0:1.92-527. 100% | 182.6 MiB/s | 560.9 KiB |  00m00s
[ 24/113] Installing perl-libnet-0:3.15 100% | 143.4 MiB/s | 293.8 KiB |  00m00s
[ 25/113] Installing perl-Unicode-Norma 100% | 257.2 MiB/s | 526.8 KiB |  00m00s
[ 26/113] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 27/113] Installing perl-Data-Dumper-0 100% |  67.1 MiB/s | 137.4 KiB |  00m00s
[ 28/113] Installing perl-URI-0:5.37-1. 100% |  56.5 MiB/s | 289.2 KiB |  00m00s
[ 29/113] Installing perl-AutoLoader-0: 100% |   0.0   B/s |  21.0 KiB |  00m00s
[ 30/113] Installing perl-IO-Socket-IP- 100% |  99.9 MiB/s | 102.3 KiB |  00m00s
[ 31/113] Installing perl-IO-Socket-SSL 100% | 178.5 MiB/s | 731.0 KiB |  00m00s
[ 32/113] Installing perl-Net-SSLeay-0: 100% | 180.3 MiB/s |   1.4 MiB |  00m00s
[ 33/113] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[ 34/113] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 35/113] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[ 36/113] Installing perl-Time-HiRes-4: 100% | 150.1 MiB/s | 153.7 KiB |  00m00s
[ 37/113] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 38/113] Installing perl-File-Path-0:2 100% |  62.9 MiB/s |  64.4 KiB |  00m00s
[ 39/113] Installing perl-locale-0:1.13 100% |   0.0   B/s |   6.5 KiB |  00m00s
[ 40/113] Installing perl-HTTP-Tiny-0:0 100% | 160.6 MiB/s | 164.5 KiB |  00m00s
[ 41/113] Installing perl-Pod-Simple-1: 100% | 140.3 MiB/s | 574.8 KiB |  00m00s
[ 42/113] Installing perl-Term-Cap-0:1. 100% |  29.8 MiB/s |  30.6 KiB |  00m00s
[ 43/113] Installing perl-Term-ANSIColo 100% |  96.8 MiB/s |  99.1 KiB |  00m00s
[ 44/113] Installing perl-IPC-Open3-0:1 100% |  27.8 MiB/s |  28.5 KiB |  00m00s
[ 45/113] Installing perl-File-Temp-1:0 100% | 161.6 MiB/s | 165.5 KiB |  00m00s
[ 46/113] Installing perl-POSIX-0:2.26- 100% | 128.3 MiB/s | 262.7 KiB |  00m00s
[ 47/113] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 48/113] Installing perl-Pod-Perldoc-0 100% |   6.6 MiB/s | 169.4 KiB |  00m00s
[ 49/113] Installing perl-podlators-1:6 100% |  12.9 MiB/s | 331.1 KiB |  00m00s
[ 50/113] Installing perl-File-stat-0:1 100% |  13.9 MiB/s |  14.2 KiB |  00m00s
[ 51/113] Installing perl-Socket-4:2.04 100% | 144.4 MiB/s | 147.8 KiB |  00m00s
[ 52/113] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.5 KiB |  00m00s
[ 53/113] Installing perl-Symbol-0:1.09 100% |   0.0   B/s |   7.3 KiB |  00m00s
[ 54/113] Installing perl-Pod-Usage-4:2 100% |   3.7 MiB/s |  87.8 KiB |  00m00s
[ 55/113] Installing perl-mro-0:1.30-52 100% |  80.7 MiB/s |  82.6 KiB |  00m00s
[ 56/113] Installing perl-IO-0:1.56-527 100% |  95.5 MiB/s | 195.6 KiB |  00m00s
[ 57/113] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[ 58/113] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  13.0 KiB |  00m00s
[ 59/113] Installing perl-Fcntl-0:1.20- 100% |  91.6 MiB/s |  93.8 KiB |  00m00s
[ 60/113] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[ 61/113] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB |  00m00s
[ 62/113] Installing perl-Storable-1:3. 100% | 119.4 MiB/s | 244.5 KiB |  00m00s
[ 63/113] Installing perl-MIME-Base64-0 100% |  93.9 MiB/s |  96.1 KiB |  00m00s
[ 64/113] Installing perl-Getopt-Std-0: 100% |   0.0   B/s |  13.0 KiB |  00m00s
[ 65/113] Installing perl-overload-0:1. 100% |  70.3 MiB/s |  72.0 KiB |  00m00s
[ 66/113] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
[ 67/113] Installing perl-parent-1:0.24 100% |  10.7 MiB/s |  11.0 KiB |  00m00s
[ 68/113] Installing perl-Scalar-List-U 100% |  76.5 MiB/s | 156.6 KiB |  00m00s
[ 69/113] Installing perl-constant-0:1. 100% |  26.8 MiB/s |  27.4 KiB |  00m00s
[ 70/113] Installing perl-File-Basename 100% |   0.0   B/s |  14.6 KiB |  00m00s
[ 71/113] Installing perl-Errno-0:1.39- 100% |   0.0   B/s |   8.8 KiB |  00m00s
[ 72/113] Installing perl-Carp-0:1.54-5 100% |  46.6 MiB/s |  47.7 KiB |  00m00s
[ 73/113] Installing perl-Encode-4:3.24 100% | 127.4 MiB/s |   4.8 MiB |  00m00s
[ 74/113] Installing perl-DynaLoader-0: 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[ 75/113] Installing perl-PathTools-0:3 100% | 111.6 MiB/s | 228.6 KiB |  00m00s
[ 76/113] Installing perl-Exporter-0:5. 100% |  18.1 MiB/s |  55.5 KiB |  00m00s
[ 77/113] Installing perl-libs-4:5.44.0 100% | 206.2 MiB/s |  12.2 MiB |  00m00s
[ 78/113] Installing perl-interpreter-4 100% |   7.2 MiB/s | 177.5 KiB |  00m00s
[ 79/113] Installing perl-threads-1:2.4 100% |  66.9 MiB/s | 136.9 KiB |  00m00s
[ 80/113] Installing perl-threads-share 100% | 103.4 MiB/s | 105.8 KiB |  00m00s
[ 81/113] Installing perl-Thread-Queue- 100% |  29.7 MiB/s |  30.4 KiB |  00m00s
[ 82/113] Installing perl-File-Compare- 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 83/113] Installing perl-File-Copy-0:2 100% |   0.0   B/s |  20.2 KiB |  00m00s
[ 84/113] Installing perl-File-Find-0:1 100% |   0.0   B/s |  42.5 KiB |  00m00s
[ 85/113] Installing gettext-envsubst-0 100% |   4.4 MiB/s | 108.0 KiB |  00m00s
[ 86/113] Installing gettext-runtime-0: 100% |  23.5 MiB/s | 794.8 KiB |  00m00s
[ 87/113] Installing tzdata-0:2026e-1.f 100% |  28.8 MiB/s |   1.5 MiB |  00m00s
[ 88/113] Installing python-pip-wheel-0 100% | 422.7 MiB/s |   1.3 MiB |  00m00s
[ 89/113] Installing mpdecimal-0:4.0.1- 100% |  34.5 MiB/s | 282.7 KiB |  00m00s
[ 90/113] Installing python3-libs-0:3.1 100% | 247.6 MiB/s |  50.3 MiB |  00m00s
[ 91/113] Installing python3-0:3.15.0~r 100% |   3.5 MiB/s |  86.5 KiB |  00m00s
[ 92/113] Installing gettext-0:1.0-4.fc 100% | 271.9 MiB/s |  18.5 MiB |  00m00s
[ 93/113] Installing kernel-headers-0:7 100% | 128.9 MiB/s |   7.1 MiB |  00m00s
[ 94/113] Installing glibc-devel-0:2.44 100% | 107.8 MiB/s |   2.4 MiB |  00m00s
[ 95/113] Installing libxcrypt-devel-0: 100% |  32.5 MiB/s |  33.3 KiB |  00m00s
[ 96/113] Installing gettext-common-dev 100% | 582.5 MiB/s | 596.5 KiB |  00m00s
[ 97/113] Installing gettext-devel-0:1. 100% |  48.4 MiB/s |   1.5 MiB |  00m00s
[ 98/113] Installing libubsan-0:16.2.1- 100% | 232.8 MiB/s | 476.7 KiB |  00m00s
[ 99/113] Installing libatomic-0:16.2.1 100% |  77.0 MiB/s |  78.8 KiB |  00m00s
[100/113] Installing libasan-0:16.2.1-2 100% | 308.3 MiB/s |   1.5 MiB |  00m00s
[101/113] Installing m4-0:1.4.21-3.fc45 100% |  31.2 MiB/s | 895.1 KiB |  00m00s
[102/113] Installing emacs-filesystem-1 100% |   1.0 MiB/s |   1.1 KiB |  00m00s
[103/113] Installing autoconf-0:2.73-4. 100% |  87.3 MiB/s |   2.9 MiB |  00m00s
[104/113] Installing automake-0:1.18.1- 100% |  55.7 MiB/s |   1.8 MiB |  00m00s
[105/113] Installing make-1:4.4.1-13.fc 100% |  59.7 MiB/s |   1.9 MiB |  00m00s
[106/113] Installing gcc-0:16.2.1-2.fc4 100% | 322.5 MiB/s | 112.5 MiB |  00m00s
[107/113] Installing libtool-0:2.6.2-1. 100% |  91.5 MiB/s |   2.8 MiB |  00m00s
[108/113] Installing annobin-plugin-gcc 100% |  51.5 MiB/s | 738.3 KiB |  00m00s
[109/113] Installing gcc-plugin-annobin 100% |   4.9 MiB/s |  70.7 KiB |  00m00s
[110/113] Installing fftw-devel-0:3.3.1 100% | 140.4 MiB/s | 287.5 KiB |  00m00s
[111/113] Installing gifticlib-devel-0: 100% |  22.7 MiB/s |  23.2 KiB |  00m00s
[112/113] Installing zlib-ng-compat-dev 100% | 106.0 MiB/s | 108.6 KiB |  00m00s
[113/113] Installing expat-devel-0:2.8. 100% |   1.2 MiB/s | 238.6 KiB |  00m00s
Complete!
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1791331200
Wrote: /builddir/build/SRPMS/cat-surface-1.0.28-1.fc46.src.rpm
Updating and loading repositories:
 fedora                                 100% |  65.0 KiB/s |   9.7 KiB |  00m00s
 Copr repository                        100% | 153.1 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package "autoconf-2.73-4.fc45.noarch" is already installed.
Package "automake-1.18.1-5.fc45.noarch" is already installed.
Package "expat-devel-2.8.3-1.fc46.aarch64" is already installed.
Package "fftw-devel-3.3.10-18.fc45.aarch64" is already installed.
Package "gcc-16.2.1-2.fc46.1.aarch64" is already installed.
Package "gifticlib-devel-1.0.9-30.fc44.aarch64" is already installed.
Package "libtool-2.6.2-1.fc46.aarch64" is already installed.
Package "make-1:4.4.1-13.fc45.aarch64" is already installed.
Package "nifticlib-devel-3.0.1-6.fc45.aarch64" is already installed.
Package "pkgconf-pkg-config-2.5.1-2.fc45.aarch64" is already installed.
Package "python3-3.15.0~rc3-2.fc46.aarch64" is already installed.
Package "zlib-ng-compat-devel-2.3.3-6.fc45.aarch64" is already installed.

Nothing to do.
Finish: build setup for cat-surface-1.0.28-1.fc46.src.rpm
Start: rpmbuild cat-surface-1.0.28-1.fc46.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1791331200
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.3gTUQv
Creating(rpmbuild.env): /builddir/build/BUILD/cat-surface-1.0.28-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/cat-surface-1.0.28-build"
  RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "
  RPM_ARCH="aarch64"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="4"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/cat-surface-1.0.28-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="cat-surface"
  RPM_PACKAGE_VERSION="1.0.28"
  RPM_PACKAGE_RELEASE="1.fc46"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.SycobA
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ rm -rf CAT-Surface-1.0.28
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/CAT-Surface-1.0.28.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd CAT-Surface-1.0.28
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ cp -p 3rdparty/nifti/nifti1_local.h Include/
+ rm -rf 3rdparty/genus0 3rdparty/zlib 3rdparty/expat 3rdparty/nifti 3rdparty/gifticlib 3rdparty/fftw
+ python3 -
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.K6JQzp
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd CAT-Surface-1.0.28
+ autoreconf -fiv
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force -I m4
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac,
libtoolize: and rerunning libtoolize and aclocal.
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: no need to run autopoint (confirmed)
autoreconf: running: aclocal --force -I m4
autoreconf: running: /usr/bin/autoconf --force
autoreconf: running: /usr/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:6: installing './compile'
configure.ac:8: installing './config.guess'
configure.ac:8: installing './config.sub'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
autoreconf: configure.ac: not running make: --make not given
autoreconf: Leaving directory '.'
+ export 'CPPFLAGS=-I/usr/include/nifti -I/usr/include/gifti'
+ CPPFLAGS='-I/usr/include/nifti -I/usr/include/gifti'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2026-10-08 17:15:16.033628283 +0000
+++ ./configure	2026-10-08 17:15:16.642644725 +0000
@@ -7290,7 +7290,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="$SED -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"\
 $lt_cdecl_hook\
 " -e 's/^T .* \([a-zA-Z_][a-zA-Z0-9_]*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \([a-zA-Z_][a-zA-Z0-9_]*\)$/extern char \1;/p'"
@@ -15550,7 +15550,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ mv ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ mv ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
--- ./3rdparty/bicpl-surface/configure.backup	2026-09-18 13:02:04.000000000 +0000
+++ ./3rdparty/bicpl-surface/configure	2026-10-08 17:15:16.660645211 +0000
@@ -1734,7 +1734,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ mv ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
+ /usr/bin/sed -r --in-place=.backup '/lt_cv_sys_global_symbol_to_cdecl=/s#(".*"|'\''.*'\'')#"sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./3rdparty/bicpl-surface/configure
+ diff -u ./3rdparty/bicpl-surface/configure.backup ./3rdparty/bicpl-surface/configure
--- ./3rdparty/bicpl-surface/configure.backup	2026-10-08 17:15:16.660645211 +0000
+++ ./3rdparty/bicpl-surface/configure	2026-10-08 17:15:16.675645616 +0000
@@ -6064,7 +6064,7 @@
 # Transform an extracted symbol line into a proper C declaration.
 # Some systems (esp. on ia64) link data and code symbols differently,
 # so use this general approach.
-lt_cv_sys_global_symbol_to_cdecl="sed -n"\
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"\
 $lt_cdecl_hook\
 " -e 's/^T .* \(.*\)$/extern int \1();/p'"\
 " -e 's/^$symcode$symcode* .* \(.*\)$/extern char \1;/p'"
@@ -13063,7 +13063,7 @@
 compiler='`$ECHO "$compiler" | $SED "$delay_single_quote_subst"`'
 GCC='`$ECHO "$GCC" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_pipe='`$ECHO "$lt_cv_sys_global_symbol_pipe" | $SED "$delay_single_quote_subst"`'
-lt_cv_sys_global_symbol_to_cdecl='`$ECHO "$lt_cv_sys_global_symbol_to_cdecl" | $SED "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
 lt_cv_sys_global_symbol_to_import='`$ECHO "$lt_cv_sys_global_symbol_to_import" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address" | $SED "$delay_single_quote_subst"`'
 lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $SED "$delay_single_quote_subst"`'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
+ for i in $(find . -name ltmain.sh)
+ /usr/bin/sed -i.backup -e 's~compiler_flags=$~compiler_flags="-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors"~' ./ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=aarch64-redhat-linux --host=aarch64-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --enable-static --disable-shared
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether UID '1000' is supported by ustar format... yes
checking whether GID '135' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking for aarch64-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C23 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking build system type... aarch64-redhat-linux-gnu
checking host system type... aarch64-redhat-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert aarch64-redhat-linux-gnu file names to aarch64-redhat-linux-gnu format... func_convert_file_noop
checking how to convert aarch64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for file... file
checking for aarch64-redhat-linux-objdump... no
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for aarch64-redhat-linux-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for aarch64-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking for aarch64-redhat-linux-ar... no
checking for ar... ar
checking for archiver @FILE support... @
checking for aarch64-redhat-linux-strip... no
checking for strip... strip
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for aarch64-redhat-linux-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking which variant of shared library versioning to provide... (default) aix
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for aarch64-redhat-linux-pkg-config... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for fftw3... yes
checking for expat... yes
checking for zlib... yes
checking for znzopen in -lznz... yes
checking for nifti_image_read in -lniftiio... yes
checking for gifti_read_da_list in -lgiftiio... yes
checking for values.h... yes
checking for malloc.h... yes
checking for library containing clock_gettime... none required
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating Progs/Makefile
config.status: creating tests/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
+ /usr/bin/make -O -j4 V=1 VERBOSE=1
/usr/bin/make  all-recursive
Making all in .
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/colour_def.lo 3rdparty/volume_io/Geometry/colour_def.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/colour_def.c -o 3rdparty/volume_io/Geometry/colour_def.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/volume_io/Geometry/colour_def.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/colour_def.c,v 1.6.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
3rdparty/volume_io/Geometry/colour.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/colour.c,v 1.3.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/colour.lo 3rdparty/volume_io/Geometry/colour.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/colour.c -o 3rdparty/volume_io/Geometry/colour.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/inverse.lo 3rdparty/volume_io/Geometry/inverse.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/inverse.c -o 3rdparty/volume_io/Geometry/inverse.o
3rdparty/volume_io/Geometry/inverse.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/inverse.c,v 1.8.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/gaussian.lo 3rdparty/volume_io/Geometry/gaussian.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/gaussian.c -o 3rdparty/volume_io/Geometry/gaussian.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/volume_io/Geometry/gaussian.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/gaussian.c,v 1.8.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/points.lo 3rdparty/volume_io/Geometry/points.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/points.c -o 3rdparty/volume_io/Geometry/points.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/volume_io/Geometry/points.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/points.c,v 1.13.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/newton.lo 3rdparty/volume_io/Geometry/newton.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/newton.c -o 3rdparty/volume_io/Geometry/newton.o
3rdparty/volume_io/Geometry/newton.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/newton.c,v 1.6.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/splines.lo 3rdparty/volume_io/Geometry/splines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/splines.c -o 3rdparty/volume_io/Geometry/splines.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/volume_io/Geometry/splines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/splines.c,v 1.5.2.1 2004/10/04 20:18:40 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/tensors.lo 3rdparty/volume_io/Geometry/tensors.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/tensors.c -o 3rdparty/volume_io/Geometry/tensors.o
3rdparty/volume_io/Geometry/tensors.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/tensors.c,v 1.6.2.1 2004/10/04 20:18:41 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Geometry/transforms.lo 3rdparty/volume_io/Geometry/transforms.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Geometry/transforms.c -o 3rdparty/volume_io/Geometry/transforms.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/volume_io/Geometry/transforms.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Geometry/transforms.c,v 1.19.2.1 2004/10/04 20:18:41 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/alloc.lo 3rdparty/volume_io/Prog_utils/alloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/alloc.c -o 3rdparty/volume_io/Prog_utils/alloc.o
3rdparty/volume_io/Prog_utils/alloc.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/alloc.c,v 1.24.2.1 2004/10/04 20:19:21 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/arrays.lo 3rdparty/volume_io/Prog_utils/arrays.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/arrays.c -o 3rdparty/volume_io/Prog_utils/arrays.o
3rdparty/volume_io/Prog_utils/arrays.c:16:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   16 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/arrays.c,v 1.3.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/alloc_check.lo 3rdparty/volume_io/Prog_utils/alloc_check.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/alloc_check.c -o 3rdparty/volume_io/Prog_utils/alloc_check.o
3rdparty/volume_io/Prog_utils/alloc_check.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/alloc_check.c,v 1.22.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/print.lo 3rdparty/volume_io/Prog_utils/print.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/print.c -o 3rdparty/volume_io/Prog_utils/print.o
3rdparty/volume_io/Prog_utils/print.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/print.c,v 1.12.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/progress.lo 3rdparty/volume_io/Prog_utils/progress.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/progress.c -o 3rdparty/volume_io/Prog_utils/progress.o
3rdparty/volume_io/Prog_utils/progress.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/progress.c,v 1.9.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/string.lo 3rdparty/volume_io/Prog_utils/string.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/string.c -o 3rdparty/volume_io/Prog_utils/string.o
3rdparty/volume_io/Prog_utils/string.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/string.c,v 1.9.2.1 2004/10/04 20:19:22 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/time.lo 3rdparty/volume_io/Prog_utils/time.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/time.c -o 3rdparty/volume_io/Prog_utils/time.o
3rdparty/volume_io/Prog_utils/time.c:38:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   38 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/time.c,v 1.21.2.3 2005/07/13 19:59:19 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/ParseArgv.lo 3rdparty/bicpl-surface/ParseArgv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/ParseArgv.c -o 3rdparty/bicpl-surface/ParseArgv.o
3rdparty/bicpl-surface/ParseArgv.c: In function 'ParseArgv':
3rdparty/bicpl-surface/ParseArgv.c:173:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  173 |          *((int *) infoPtr->dst) = *((int*)(&infoPtr->src));
      |                                     ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:176:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  176 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:198:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  198 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:221:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  221 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:237:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  237 |          nargs = *((int*)(&infoPtr->src));
      |                   ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c: In function 'PrintUsage':
3rdparty/bicpl-surface/ParseArgv.c:393:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  393 |             nargs = *((int*)(&infoPtr->src));
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:402:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  402 |             nargs = *((int*)(&infoPtr->src));
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c:412:23: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  412 |             nargs = *((int*)(&infoPtr->src));
      |                      ~^~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/ParseArgv.c: In function 'ParseArgv':
3rdparty/bicpl-surface/ParseArgv.c:422:39: warning: '%s' directive argument is null [-Wformat-overflow=]
  422 |                   FPRINTF(stderr, " \"%s\"", string);
      |                                       ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/bintree.lo 3rdparty/bicpl-surface/Data_structures/bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/bintree.c -o 3rdparty/bicpl-surface/Data_structures/bintree.o
3rdparty/bicpl-surface/Data_structures/bintree.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/bintree.c,v 1.10 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/volume_io/Prog_utils/files.lo 3rdparty/volume_io/Prog_utils/files.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/volume_io/Prog_utils/files.c -o 3rdparty/volume_io/Prog_utils/files.o
3rdparty/volume_io/Prog_utils/files.c: In function 'open_file':
3rdparty/volume_io/Prog_utils/files.c:832:14: warning: unused variable 'command_status' [-Wunused-variable]
  832 |     int      command_status;
      |              ^~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c:829:14: warning: unused variable 'command' [-Wunused-variable]
  829 |     char     command[EXTREMELY_LARGE_STRING_SIZE];
      |              ^~~~~~~
3rdparty/volume_io/Prog_utils/files.c:828:15: warning: unused variable 'tmp_name' [-Wunused-variable]
  828 |     char     *tmp_name;
      |               ^~~~~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'input_possibly_quoted_string':
3rdparty/volume_io/Prog_utils/files.c:1515:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
 1515 |            (quoted && ch != quote ||
      |             ~~~~~~~^~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c: At top level:
3rdparty/volume_io/Prog_utils/files.c:27:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   27 | static char rcsid[] = "$Header: /private-cvsroot/minc/volume_io/Prog_utils/files.c,v 1.39.2.2 2005/03/31 17:23:34 bert Exp $";
      |             ^~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'print_system_error':
3rdparty/volume_io/Prog_utils/files.c:51:5: warning: 'error' is used uninitialized [-Wuninitialized]
   51 |     print_error( "\nSystem message: %s\n", error );
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c:49:13: note: 'error' was declared here
   49 |     char   *error;
      |             ^~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'input_string':
3rdparty/volume_io/Prog_utils/files.c:1410:34: warning: 'ch' may be used uninitialized [-Wmaybe-uninitialized]
 1410 |     if( termination_char != '\n' && ch == '\n' )
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c:1396:13: note: 'ch' was declared here
 1396 |     char    ch;
      |             ^~
In function 'unget_character',
    inlined from 'input_possibly_quoted_string' at 3rdparty/volume_io/Prog_utils/files.c:1524:16:
3rdparty/volume_io/Prog_utils/files.c:1241:9: warning: 'ch' may be used uninitialized [-Wmaybe-uninitialized]
 1241 |     c = ungetc( (int) ch, file );
      |         ^~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/volume_io/Prog_utils/files.c: In function 'input_possibly_quoted_string':
3rdparty/volume_io/Prog_utils/files.c:1493:14: note: 'ch' was declared here
 1493 |     char     ch, quote;
      |              ^~
3rdparty/volume_io/Prog_utils/files.c:1523:7: warning: 'quoted' may be used uninitialized [-Wmaybe-uninitialized]
 1523 |     if( !quoted )
      |       ^
3rdparty/volume_io/Prog_utils/files.c:1492:14: note: 'quoted' was declared here
 1492 |     BOOLEAN  quoted;
      |              ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/build_bintree.lo 3rdparty/bicpl-surface/Data_structures/build_bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/build_bintree.c -o 3rdparty/bicpl-surface/Data_structures/build_bintree.o
3rdparty/bicpl-surface/Data_structures/build_bintree.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/build_bintree.c,v 1.13 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:136:5: warning: 'limits' may be used uninitialized [-Wmaybe-uninitialized]
  136 |     initialize_bintree( limits[X][0], limits[X][1],
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                         limits[Y][0], limits[Y][1],
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |                         limits[Z][0], limits[Z][1], bintree );
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c:100:39: note: 'limits' declared here
  100 |     Real      avg_nodes, avg_objects, limits[N_DIMENSIONS][2], size;
      |                                       ^~~~~~
In function 'split_node',
    inlined from 'subdivide_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:218:9,
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:515:50: warning: 'axis_index' may be used uninitialized [-Wmaybe-uninitialized]
  515 |     max_plane = (Real) limits->limits[axis_index][1];
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:443:26: note: 'axis_index' was declared here
  443 |     int                  axis_index, top, bottom, start_dim, end_dim;
      |                          ^~~~~~~~~~
In function 'split_node',
    inlined from 'subdivide_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:218:9,
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:517:20: warning: 'left_plane' may be used uninitialized [-Wmaybe-uninitialized]
  517 |     if( left_plane - min_plane < max_plane - right_plane )
      |         ~~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:445:26: note: 'left_plane' was declared here
  445 |     Real                 left_plane, right_plane, split_position;
      |                          ^~~~~~~~~~
In function 'split_node',
    inlined from 'subdivide_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:218:9,
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:517:44: warning: 'right_plane' may be used uninitialized [-Wmaybe-uninitialized]
  517 |     if( left_plane - min_plane < max_plane - right_plane )
      |                                  ~~~~~~~~~~^~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:445:38: note: 'right_plane' was declared here
  445 |     Real                 left_plane, right_plane, split_position;
      |                                      ^~~~~~~~~~~
In function 'subdivide_bintree',
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:223:13: warning: 'left_cost' may be used uninitialized [-Wmaybe-uninitialized]
  223 |             insert_in_leaf_queue( &leaf_queue, ptr_to_left_child, left_cost,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  224 |                                   &left_limits );
      |                                   ~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:187:29: note: 'left_cost' was declared here
  187 |     Real                    left_cost, right_cost;
      |                             ^~~~~~~~~
In function 'subdivide_bintree',
    inlined from 'create_object_bintree' at 3rdparty/bicpl-surface/Data_structures/build_bintree.c:140:5:
3rdparty/bicpl-surface/Data_structures/build_bintree.c:229:13: warning: 'right_cost' may be used uninitialized [-Wmaybe-uninitialized]
  229 |             insert_in_leaf_queue( &leaf_queue, ptr_to_right_child, right_cost,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  230 |                                   &right_limits );
      |                                   ~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Data_structures/build_bintree.c: In function 'create_object_bintree':
3rdparty/bicpl-surface/Data_structures/build_bintree.c:187:40: note: 'right_cost' was declared here
  187 |     Real                    left_cost, right_cost;
      |                                        ^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/bitlist.lo 3rdparty/bicpl-surface/Data_structures/bitlist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/bitlist.c -o 3rdparty/bicpl-surface/Data_structures/bitlist.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Data_structures/bitlist.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/bitlist.c,v 1.13 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/hash2_table.lo 3rdparty/bicpl-surface/Data_structures/hash2_table.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/hash2_table.c -o 3rdparty/bicpl-surface/Data_structures/hash2_table.o
3rdparty/bicpl-surface/Data_structures/hash2_table.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/hash2_table.c,v 1.4 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/hash_table.lo 3rdparty/bicpl-surface/Data_structures/hash_table.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/hash_table.c -o 3rdparty/bicpl-surface/Data_structures/hash_table.o
3rdparty/bicpl-surface/Data_structures/hash_table.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/hash_table.c,v 1.14 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/object_bintrees.lo 3rdparty/bicpl-surface/Data_structures/object_bintrees.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/object_bintrees.c -o 3rdparty/bicpl-surface/Data_structures/object_bintrees.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Data_structures/object_bintrees.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/object_bintrees.c,v 1.13 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/point_bintree.lo 3rdparty/bicpl-surface/Data_structures/point_bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/point_bintree.c -o 3rdparty/bicpl-surface/Data_structures/point_bintree.o
3rdparty/bicpl-surface/Data_structures/point_bintree.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/point_bintree.c,v 1.10 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/ray_bintree.lo 3rdparty/bicpl-surface/Data_structures/ray_bintree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/ray_bintree.c -o 3rdparty/bicpl-surface/Data_structures/ray_bintree.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Data_structures/ray_bintree.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/ray_bintree.c,v 1.19 2005/08/17 22:31:12 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/approx_sqrt.lo 3rdparty/bicpl-surface/Geometry/approx_sqrt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/approx_sqrt.c -o 3rdparty/bicpl-surface/Geometry/approx_sqrt.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Data_structures/skiplist.lo 3rdparty/bicpl-surface/Data_structures/skiplist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Data_structures/skiplist.c -o 3rdparty/bicpl-surface/Data_structures/skiplist.o
3rdparty/bicpl-surface/Data_structures/skiplist.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Data_structures/skiplist.c,v 1.13 2005/08/17 22:31:13 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/clip_3d.lo 3rdparty/bicpl-surface/Geometry/clip_3d.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/clip_3d.c -o 3rdparty/bicpl-surface/Geometry/clip_3d.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/curvature.lo 3rdparty/bicpl-surface/Geometry/curvature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/curvature.c -o 3rdparty/bicpl-surface/Geometry/curvature.o
3rdparty/bicpl-surface/Geometry/curvature.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/curvature.c,v 1.22 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/closest_point.lo 3rdparty/bicpl-surface/Geometry/closest_point.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/closest_point.c -o 3rdparty/bicpl-surface/Geometry/closest_point.o
3rdparty/bicpl-surface/Geometry/closest_point.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/closest_point.c,v 1.10 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/flatten.lo 3rdparty/bicpl-surface/Geometry/flatten.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/flatten.c -o 3rdparty/bicpl-surface/Geometry/flatten.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Geometry/flatten.c:17:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   17 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/flatten.c,v 1.6 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/geodesic_distance.lo 3rdparty/bicpl-surface/Geometry/geodesic_distance.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/geodesic_distance.c -o 3rdparty/bicpl-surface/Geometry/geodesic_distance.o
3rdparty/bicpl-surface/Geometry/geodesic_distance.c:16:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   16 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/geodesic_distance.c,v 1.9 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/geometry.lo 3rdparty/bicpl-surface/Geometry/geometry.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/geometry.c -o 3rdparty/bicpl-surface/Geometry/geometry.o
3rdparty/bicpl-surface/Geometry/geometry.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/geometry.c,v 1.21 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/line_circle.lo 3rdparty/bicpl-surface/Geometry/line_circle.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/line_circle.c -o 3rdparty/bicpl-surface/Geometry/line_circle.o
3rdparty/bicpl-surface/Geometry/line_circle.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/line_circle.c,v 1.12 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/intersect.lo 3rdparty/bicpl-surface/Geometry/intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/intersect.c -o 3rdparty/bicpl-surface/Geometry/intersect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Geometry/intersect.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/intersect.c,v 1.13 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/path_surface.lo 3rdparty/bicpl-surface/Geometry/path_surface.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/path_surface.c -o 3rdparty/bicpl-surface/Geometry/path_surface.o
3rdparty/bicpl-surface/Geometry/path_surface.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/path_surface.c,v 1.8 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
In function 'follow_path',
    inlined from 'find_path_between_polygons' at 3rdparty/bicpl-surface/Geometry/path_surface.c:150:9:
3rdparty/bicpl-surface/Geometry/path_surface.c:216:26: warning: 'neighbour' may be used uninitialized [-Wmaybe-uninitialized]
  216 |         path[path_index] = current_polygon;
      |         ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/path_surface.c: In function 'find_path_between_polygons':
3rdparty/bicpl-surface/Geometry/path_surface.c:189:50: note: 'neighbour' was declared here
  189 |     int   n, start_index, end_index, path_index, neighbour, current_polygon;
      |                                                  ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/platonics.lo 3rdparty/bicpl-surface/Geometry/platonics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/platonics.c -o 3rdparty/bicpl-surface/Geometry/platonics.o
3rdparty/bicpl-surface/Geometry/platonics.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/platonics.c,v 1.5 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/map_polygons.lo 3rdparty/bicpl-surface/Geometry/map_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/map_polygons.c -o 3rdparty/bicpl-surface/Geometry/map_polygons.o
3rdparty/bicpl-surface/Geometry/map_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/map_polygons.c,v 1.14 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/points.lo 3rdparty/bicpl-surface/Geometry/points.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/points.c -o 3rdparty/bicpl-surface/Geometry/points.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Geometry/points.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/points.c,v 1.9 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.lo 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.c -o 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/poly_dist.lo 3rdparty/bicpl-surface/Geometry/poly_dist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/poly_dist.c -o 3rdparty/bicpl-surface/Geometry/poly_dist.o
3rdparty/bicpl-surface/Geometry/poly_dist.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/poly_dist.c,v 1.10 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/segment_polygons.lo 3rdparty/bicpl-surface/Geometry/segment_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/segment_polygons.c -o 3rdparty/bicpl-surface/Geometry/segment_polygons.o
3rdparty/bicpl-surface/Geometry/segment_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/segment_polygons.c,v 1.9 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/polygon_sphere.lo 3rdparty/bicpl-surface/Geometry/polygon_sphere.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/polygon_sphere.c -o 3rdparty/bicpl-surface/Geometry/polygon_sphere.o
3rdparty/bicpl-surface/Geometry/polygon_sphere.c: In function 'half_sample_sphere_tessellation':
3rdparty/bicpl-surface/Geometry/polygon_sphere.c:547:29: warning: missing braces around initializer [-Wmissing-braces]
  547 |     static Point   centre = { 0.0f, 0.0f, 0.0f };
      |                             ^
      |                               {                }
3rdparty/bicpl-surface/Geometry/polygon_sphere.c: At top level:
3rdparty/bicpl-surface/Geometry/polygon_sphere.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/polygon_sphere.c,v 1.17 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/smooth_curvature.lo 3rdparty/bicpl-surface/Geometry/smooth_curvature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/smooth_curvature.c -o 3rdparty/bicpl-surface/Geometry/smooth_curvature.o
3rdparty/bicpl-surface/Geometry/smooth_curvature.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/smooth_curvature.c,v 1.17 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/smooth_lines.lo 3rdparty/bicpl-surface/Geometry/smooth_lines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/smooth_lines.c -o 3rdparty/bicpl-surface/Geometry/smooth_lines.o
3rdparty/bicpl-surface/Geometry/smooth_lines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/smooth_lines.c,v 1.12 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/ray_intersect.lo 3rdparty/bicpl-surface/Geometry/ray_intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/ray_intersect.c -o 3rdparty/bicpl-surface/Geometry/ray_intersect.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Geometry/ray_intersect.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/ray_intersect.c,v 1.32 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
3rdparty/bicpl-surface/Geometry/ray_intersect.c: In function 'get_intersect_directions':
3rdparty/bicpl-surface/Geometry/ray_intersect.c:63:11: warning: 'd' may be used uninitialized [-Wmaybe-uninitialized]
   63 |     return( d );
      |           ^
3rdparty/bicpl-surface/Geometry/ray_intersect.c:50:11: note: 'd' was declared here
   50 |     Real *d;
      |           ^
3rdparty/bicpl-surface/Geometry/ray_intersect.c: In function 'intersect_ray_object':
3rdparty/bicpl-surface/Geometry/ray_intersect.c:949:7: warning: 'found' may be used uninitialized [-Wmaybe-uninitialized]
  949 |     if( found )
      |       ^
3rdparty/bicpl-surface/Geometry/ray_intersect.c:925:27: note: 'found' was declared here
  925 |     BOOLEAN               found;
      |                           ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/smooth_polygons.lo 3rdparty/bicpl-surface/Geometry/smooth_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/smooth_polygons.c -o 3rdparty/bicpl-surface/Geometry/smooth_polygons.o
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/smooth_polygons.c,v 1.13 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
In file included from ./3rdparty/volume_io/Include/volume_io.h:46,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ./3rdparty/bicpl-surface/Include/bicpl_internal.h:12,
                 from 3rdparty/bicpl-surface/Geometry/smooth_polygons.c:15:
3rdparty/bicpl-surface/Geometry/smooth_polygons.c: In function 'update_point_position':
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_normal.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:55: note: 'unit_normal.coords[0]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                                       ^~~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_normal.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:55: note: 'unit_normal.coords[1]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                                       ^~~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_normal.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:55: note: 'unit_normal.coords[2]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                                       ^~~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_delta.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:43: note: 'unit_delta.coords[0]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                           ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_delta.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:43: note: 'unit_delta.coords[1]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                           ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'unit_delta.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Geometry/smooth_polygons.c:272:43: note: 'unit_delta.coords[2]' was declared here
  272 |     Vector           diff, delta, normal, unit_delta, unit_normal, cross;
      |                                           ^~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/solve_plane.lo 3rdparty/bicpl-surface/Geometry/solve_plane.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/solve_plane.c -o 3rdparty/bicpl-surface/Geometry/solve_plane.o
3rdparty/bicpl-surface/Geometry/solve_plane.c:17:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   17 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/solve_plane.c,v 1.14 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/subdivide_lines.lo 3rdparty/bicpl-surface/Geometry/subdivide_lines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/subdivide_lines.c -o 3rdparty/bicpl-surface/Geometry/subdivide_lines.o
3rdparty/bicpl-surface/Geometry/subdivide_lines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/subdivide_lines.c,v 1.11 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/surface_area.lo 3rdparty/bicpl-surface/Geometry/surface_area.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/surface_area.c -o 3rdparty/bicpl-surface/Geometry/surface_area.o
3rdparty/bicpl-surface/Geometry/surface_area.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/surface_area.c,v 1.8 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/tetrahedrons.lo 3rdparty/bicpl-surface/Geometry/tetrahedrons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/tetrahedrons.c -o 3rdparty/bicpl-surface/Geometry/tetrahedrons.o
3rdparty/bicpl-surface/Geometry/tetrahedrons.c: In function 'half_sample_tetrahedral_tessellation':
3rdparty/bicpl-surface/Geometry/tetrahedrons.c:217:36: warning: missing braces around initializer [-Wmissing-braces]
  217 |     static  Point   dummy_centre = { 0.0f, 0.0f, 0.0f };
      |                                    ^
      |                                      {                }
3rdparty/bicpl-surface/Geometry/tetrahedrons.c: At top level:
3rdparty/bicpl-surface/Geometry/tetrahedrons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/tetrahedrons.c,v 1.15 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/subdivide_polygons.lo 3rdparty/bicpl-surface/Geometry/subdivide_polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/subdivide_polygons.c -o 3rdparty/bicpl-surface/Geometry/subdivide_polygons.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Geometry/subdivide_polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/subdivide_polygons.c,v 1.19 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.lo 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c -o 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.o
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c: In function 'get_polygons':
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:35:11: warning: 'n_polygons' may be used uninitialized [-Wmaybe-uninitialized]
   35 |     return( n_polygons );
      |           ^
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:14:19: note: 'n_polygons' was declared here
   14 |     int           n_polygons;
      |                   ^~~~~~~~~~
In file included from ./3rdparty/volume_io/Include/volume_io.h:40,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ./3rdparty/bicpl-surface/Include/bicpl_internal.h:12,
                 from 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:1:
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c: In function 'get_isosurface_point':
./3rdparty/volume_io/Include/volume_io/basic.h:98:42: warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized]
   98 | #define  INTERPOLATE( alpha, a, b ) ((a) + (alpha) * ((b) - (a)))
      |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/Marching_cubes/isosurfaces.c:96:21: note: 'alpha' was declared here
   96 |     Real            alpha, val1, val2;
      |                     ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.c -o 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Geometry/tubes.lo 3rdparty/bicpl-surface/Geometry/tubes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Geometry/tubes.c -o 3rdparty/bicpl-surface/Geometry/tubes.o
3rdparty/bicpl-surface/Geometry/tubes.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Geometry/tubes.c,v 1.7 2005/08/17 22:30:25 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/gaussian.lo 3rdparty/bicpl-surface/Numerical/gaussian.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/gaussian.c -o 3rdparty/bicpl-surface/Numerical/gaussian.o
3rdparty/bicpl-surface/Numerical/gaussian.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/gaussian.c,v 1.8 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/amoeba.lo 3rdparty/bicpl-surface/Numerical/amoeba.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/amoeba.c -o 3rdparty/bicpl-surface/Numerical/amoeba.o
3rdparty/bicpl-surface/Numerical/amoeba.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/amoeba.c,v 1.15 2005/08/17 22:28:58 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.c -o 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.lo 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c -o 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.o
3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c: In function 'create_case':
3rdparty/bicpl-surface/Marching_cubes/marching_tetra.c:107:24: warning: 'best_ord' may be used uninitialized [-Wmaybe-uninitialized]
  107 |     int     ord, rank, best_ord, best_rank, vertex;
      |                        ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/gradient_minimize.lo 3rdparty/bicpl-surface/Numerical/gradient_minimize.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/gradient_minimize.c -o 3rdparty/bicpl-surface/Numerical/gradient_minimize.o
3rdparty/bicpl-surface/Numerical/gradient_minimize.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/gradient_minimize.c,v 1.6 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/least_squares.lo 3rdparty/bicpl-surface/Numerical/least_squares.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/least_squares.c -o 3rdparty/bicpl-surface/Numerical/least_squares.o
3rdparty/bicpl-surface/Numerical/least_squares.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/least_squares.c,v 1.9 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/histogram.lo 3rdparty/bicpl-surface/Numerical/histogram.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/histogram.c -o 3rdparty/bicpl-surface/Numerical/histogram.o
3rdparty/bicpl-surface/Numerical/histogram.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/histogram.c,v 1.12 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/matrix_svd.lo 3rdparty/bicpl-surface/Numerical/matrix_svd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/matrix_svd.c -o 3rdparty/bicpl-surface/Numerical/matrix_svd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Numerical/matrix_svd.c: In function 'singular_value_decomposition':
3rdparty/bicpl-surface/Numerical/matrix_svd.c:69:8: warning: unused variable 'temp' [-Wunused-variable]
   69 |   Real temp;
      |        ^~~~
3rdparty/bicpl-surface/Numerical/matrix_svd.c: At top level:
3rdparty/bicpl-surface/Numerical/matrix_svd.c:25:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   25 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/matrix_svd.c,v 1.9 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Numerical/minimize_lsq_include.c:173:16: warning: 'private_minimize_lsq' defined but not used [-Wunused-function]
  173 | static  Real   private_minimize_lsq(
      |                ^~~~~~~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/minimize_lsq.c -o 3rdparty/bicpl-surface/Numerical/minimize_lsq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/quadratic.lo 3rdparty/bicpl-surface/Numerical/quadratic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/quadratic.c -o 3rdparty/bicpl-surface/Numerical/quadratic.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/numerical.lo 3rdparty/bicpl-surface/Numerical/numerical.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/numerical.c -o 3rdparty/bicpl-surface/Numerical/numerical.o
3rdparty/bicpl-surface/Numerical/numerical.c:24:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   24 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/numerical.c,v 1.26 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/real_quadratic.lo 3rdparty/bicpl-surface/Numerical/real_quadratic.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/real_quadratic.c -o 3rdparty/bicpl-surface/Numerical/real_quadratic.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/t_stat.lo 3rdparty/bicpl-surface/Numerical/t_stat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/t_stat.c -o 3rdparty/bicpl-surface/Numerical/t_stat.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Numerical/statistics.lo 3rdparty/bicpl-surface/Numerical/statistics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Numerical/statistics.c -o 3rdparty/bicpl-surface/Numerical/statistics.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Numerical/statistics.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Numerical/statistics.c,v 1.15 2005/08/17 22:28:59 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/coalesce.lo 3rdparty/bicpl-surface/Objects/coalesce.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/coalesce.c -o 3rdparty/bicpl-surface/Objects/coalesce.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/graphics_io.lo 3rdparty/bicpl-surface/Objects/graphics_io.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/graphics_io.c -o 3rdparty/bicpl-surface/Objects/graphics_io.o
3rdparty/bicpl-surface/Objects/graphics_io.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/graphics_io.c,v 1.9 2005/08/17 22:28:26 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/markers.lo 3rdparty/bicpl-surface/Objects/markers.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/markers.c -o 3rdparty/bicpl-surface/Objects/markers.o
3rdparty/bicpl-surface/Objects/markers.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/markers.c,v 1.5 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/colours.lo 3rdparty/bicpl-surface/Objects/colours.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/colours.c -o 3rdparty/bicpl-surface/Objects/colours.o
3rdparty/bicpl-surface/Objects/colours.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/colours.c,v 1.11 2005/08/17 22:28:26 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/lines.lo 3rdparty/bicpl-surface/Objects/lines.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/lines.c -o 3rdparty/bicpl-surface/Objects/lines.o
3rdparty/bicpl-surface/Objects/lines.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/lines.c,v 1.20 2005/08/17 22:28:26 bert Exp $";
      |             ^~~~~
3rdparty/bicpl-surface/Objects/lines.c: In function 'get_lines_arc_point':
3rdparty/bicpl-surface/Objects/lines.c:345:31: warning: 'p1' may be used uninitialized [-Wmaybe-uninitialized]
  345 |         *point = lines->points[p1];
      |                               ^
3rdparty/bicpl-surface/Objects/lines.c:307:27: note: 'p1' was declared here
  307 |     int      line, i, p0, p1, size;
      |                           ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/models.lo 3rdparty/bicpl-surface/Objects/models.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/models.c -o 3rdparty/bicpl-surface/Objects/models.o
3rdparty/bicpl-surface/Objects/models.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/models.c,v 1.11 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/pixels.lo 3rdparty/bicpl-surface/Objects/pixels.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/pixels.c -o 3rdparty/bicpl-surface/Objects/pixels.o
3rdparty/bicpl-surface/Objects/pixels.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/pixels.c,v 1.27 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/poly_neighs.lo 3rdparty/bicpl-surface/Objects/poly_neighs.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/poly_neighs.c -o 3rdparty/bicpl-surface/Objects/poly_neighs.o
3rdparty/bicpl-surface/Objects/poly_neighs.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/poly_neighs.c,v 1.23 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/objects.lo 3rdparty/bicpl-surface/Objects/objects.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/objects.c -o 3rdparty/bicpl-surface/Objects/objects.o
3rdparty/bicpl-surface/Objects/objects.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/objects.c,v 1.24 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/object_io.lo 3rdparty/bicpl-surface/Objects/object_io.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/object_io.c -o 3rdparty/bicpl-surface/Objects/object_io.o
3rdparty/bicpl-surface/Objects/object_io.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/object_io.c,v 1.30 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/rgb_lookup.lo 3rdparty/bicpl-surface/Objects/rgb_lookup.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/rgb_lookup.c -o 3rdparty/bicpl-surface/Objects/rgb_lookup.o
3rdparty/bicpl-surface/Objects/rgb_lookup.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/rgb_lookup.c,v 1.13 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/tag_objects.lo 3rdparty/bicpl-surface/Objects/tag_objects.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/tag_objects.c -o 3rdparty/bicpl-surface/Objects/tag_objects.o
3rdparty/bicpl-surface/Objects/tag_objects.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/tag_objects.c,v 1.8 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/quadmesh.lo 3rdparty/bicpl-surface/Objects/quadmesh.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/quadmesh.c -o 3rdparty/bicpl-surface/Objects/quadmesh.o
3rdparty/bicpl-surface/Objects/quadmesh.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/quadmesh.c,v 1.21 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/text.lo 3rdparty/bicpl-surface/Objects/text.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/text.c -o 3rdparty/bicpl-surface/Objects/text.o
3rdparty/bicpl-surface/Objects/text.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/text.c,v 1.11 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Prog_utils/arguments.lo 3rdparty/bicpl-surface/Prog_utils/arguments.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Prog_utils/arguments.c -o 3rdparty/bicpl-surface/Prog_utils/arguments.o
3rdparty/bicpl-surface/Prog_utils/arguments.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Prog_utils/arguments.c,v 1.14 2005/08/17 22:27:56 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Prog_utils/time.lo 3rdparty/bicpl-surface/Prog_utils/time.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Prog_utils/time.c -o 3rdparty/bicpl-surface/Prog_utils/time.o
3rdparty/bicpl-surface/Prog_utils/time.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Prog_utils/time.c,v 1.8 2005/08/17 22:27:56 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Prog_utils/globals.lo 3rdparty/bicpl-surface/Prog_utils/globals.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Prog_utils/globals.c -o 3rdparty/bicpl-surface/Prog_utils/globals.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Prog_utils/globals.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Prog_utils/globals.c,v 1.16 2005/08/17 22:27:56 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/compute_tps.lo 3rdparty/bicpl-surface/Transforms/compute_tps.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/compute_tps.c -o 3rdparty/bicpl-surface/Transforms/compute_tps.o
3rdparty/bicpl-surface/Transforms/compute_tps.c:35:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   35 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/compute_tps.c,v 1.13 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Objects/polygons.lo 3rdparty/bicpl-surface/Objects/polygons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Objects/polygons.c -o 3rdparty/bicpl-surface/Objects/polygons.o
3rdparty/bicpl-surface/Objects/polygons.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Objects/polygons.c,v 1.44 2005/08/17 22:28:27 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/compute_xfm.lo 3rdparty/bicpl-surface/Transforms/compute_xfm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/compute_xfm.c -o 3rdparty/bicpl-surface/Transforms/compute_xfm.o
3rdparty/bicpl-surface/Transforms/compute_xfm.c:99:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   99 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/compute_xfm.c,v 1.18 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/matrix_basics.lo 3rdparty/bicpl-surface/Transforms/matrix_basics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/matrix_basics.c -o 3rdparty/bicpl-surface/Transforms/matrix_basics.o
3rdparty/bicpl-surface/Transforms/matrix_basics.c:30:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   30 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/matrix_basics.c,v 1.17 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/optimize.lo 3rdparty/bicpl-surface/Transforms/optimize.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/optimize.c -o 3rdparty/bicpl-surface/Transforms/optimize.o
3rdparty/bicpl-surface/Transforms/optimize.c:19:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   19 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/optimize.c,v 1.16 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/procrustes.lo 3rdparty/bicpl-surface/Transforms/procrustes.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/procrustes.c -o 3rdparty/bicpl-surface/Transforms/procrustes.o
3rdparty/bicpl-surface/Transforms/procrustes.c:31:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   31 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/procrustes.c,v 1.15 2005/08/17 22:26:47 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.lo 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.c -o 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Transforms/safe_compute_xfm.c:85:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   85 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/safe_compute_xfm.c,v 1.13 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.lo 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.c -o 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.o
3rdparty/bicpl-surface/Transforms/rotmat_to_ang.c:84:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   84 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/rotmat_to_ang.c,v 1.21 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/transform_io.lo 3rdparty/bicpl-surface/Transforms/transform_io.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/transform_io.c -o 3rdparty/bicpl-surface/Transforms/transform_io.o
3rdparty/bicpl-surface/Transforms/transform_io.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/transform_io.c,v 1.9 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.lo 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.c -o 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/d_sign.lo 3rdparty/bicpl-surface/bicpl_clapack/d_sign.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/d_sign.c -o 3rdparty/bicpl-surface/bicpl_clapack/d_sign.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dcopy.lo 3rdparty/bicpl-surface/bicpl_clapack/dcopy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dcopy.c -o 3rdparty/bicpl-surface/bicpl_clapack/dcopy.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/Transforms/transforms.lo 3rdparty/bicpl-surface/Transforms/transforms.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/Transforms/transforms.c -o 3rdparty/bicpl-surface/Transforms/transforms.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/Transforms/transforms.c:18:13: warning: 'rcsid' defined but not used [-Wunused-variable]
   18 | static char rcsid[] = "$Header: /private-cvsroot/libraries/bicpl/Transforms/transforms.c,v 1.14 2005/08/17 22:26:48 bert Exp $";
      |             ^~~~~
In file included from ./3rdparty/volume_io/Include/volume_io.h:46,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ./3rdparty/bicpl-surface/Include/bicpl_internal.h:12,
                 from 3rdparty/bicpl-surface/Transforms/transforms.c:15:
3rdparty/bicpl-surface/Transforms/transforms.c: In function 'set_transform_x_and_z_axes':
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'n_z' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
3rdparty/bicpl-surface/Transforms/transforms.c:75:13: note: 'n_z' declared here
   75 |     Vector  n_z, n_y, n_x;
      |             ^~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:70:53: warning: 'n_z' may be used uninitialized [-Wmaybe-uninitialized]
   70 | #define  Point_coord( point, coord ) ((point).coords[coord])
3rdparty/bicpl-surface/Transforms/transforms.c:75:13: note: 'n_z' declared here
   75 |     Vector  n_z, n_y, n_x;
      |             ^~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'n_z' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
3rdparty/bicpl-surface/Transforms/transforms.c:75:13: note: 'n_z' declared here
   75 |     Vector  n_z, n_y, n_x;
      |             ^~~
3rdparty/bicpl-surface/Transforms/transforms.c: In function 'make_rotation_about_axis':
3rdparty/bicpl-surface/Transforms/transforms.c:284:7: warning: 'unit_axis.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
  284 |     x = (Real) Vector_x( unit_axis );
3rdparty/bicpl-surface/Transforms/transforms.c:276:13: note: 'unit_axis.coords[0]' was declared here
  276 |     Vector  unit_axis;
      |             ^~~~~~~~~
3rdparty/bicpl-surface/Transforms/transforms.c:285:7: warning: 'unit_axis.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
  285 |     y = (Real) Vector_y( unit_axis );
3rdparty/bicpl-surface/Transforms/transforms.c:276:13: note: 'unit_axis.coords[1]' was declared here
  276 |     Vector  unit_axis;
      |             ^~~~~~~~~
3rdparty/bicpl-surface/Transforms/transforms.c:286:7: warning: 'unit_axis.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
  286 |     z = (Real) Vector_z( unit_axis );
3rdparty/bicpl-surface/Transforms/transforms.c:276:13: note: 'unit_axis.coords[2]' was declared here
  276 |     Vector  unit_axis;
      |             ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemm.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgemm.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemm.o
3rdparty/bicpl-surface/bicpl_clapack/dgemm.c: In function 'bicpl_dgemm':
3rdparty/bicpl-surface/bicpl_clapack/dgemm.c:165:57: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  165 |     if (*m == 0 || *n == 0 || (*alpha == 0. || *k == 0) && *beta == 1.) {
      |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgemm.c:16:31: warning: variable 'ncola' set but not used [-Wunused-but-set-variable=]
   16 |     static integer i__, j, l, ncola;
      |                               ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c: In function 'bicpl_dbdsqr_':
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:235:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  235 |     } else if (*ncvt == 0 && *ldvt < 1 || *ncvt > 0 && *ldvt < max(1,*n)) {
      |                ~~~~~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:239:26: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  239 |     } else if (*ncc == 0 && *ldc < 1 || *ncc > 0 && *ldc < max(1,*n)) {
      |                ~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:486:36: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  486 |                 d__1)) || tol < 0. && (d__3 = e[m - 1], abs(d__3)) <= thresh)
      |                           ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:519:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  519 |                 ) || tol < 0. && (d__3 = e[ll], abs(d__3)) <= thresh) {
      |                      ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.c:71:23: warning: variable 'sminlo' set but not used [-Wunused-but-set-variable=]
   71 |     static doublereal sminlo;
      |                       ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemv.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgemv.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgemv.o
3rdparty/bicpl-surface/bicpl_clapack/dgemv.c: In function 'bicpl_dgemv':
3rdparty/bicpl-surface/bicpl_clapack/dgemv.c:113:44: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  113 |     if (*m == 0 || *n == 0 || *alpha == 0. && *beta == 1.) {
      |                               ~~~~~~~~~~~~~^~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dger.lo 3rdparty/bicpl-surface/bicpl_clapack/dger.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dger.c -o 3rdparty/bicpl-surface/bicpl_clapack/dger.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.lo 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlange.lo 3rdparty/bicpl-surface/bicpl_clapack/dlange.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlange.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlange.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlamch.lo 3rdparty/bicpl-surface/bicpl_clapack/dlamch.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlamch.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlamch.o
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c: In function 'dlamc2_':
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c:413:20: warning: unused variable 'c__1' [-Wunused-variable]
  413 |     static integer c__1 = 1;
      |                    ^~~~
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c: In function 'dlamc4_':
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c:723:13: warning: variable 'i__1' set but not used [-Wunused-but-set-variable=]
  723 |     integer i__1;
      |             ^~~~
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c: In function 'dlamc5_':
3rdparty/bicpl-surface/bicpl_clapack/dlamch.c:838:13: warning: variable 'i__1' set but not used [-Wunused-but-set-variable=]
  838 |     integer i__1;
      |             ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarf.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarf.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarf.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarft.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarft.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarft.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarft.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlartg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlartg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlartg.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlartg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlas2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlas2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlas2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlas2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlaset.lo 3rdparty/bicpl-surface/bicpl_clapack/dlaset.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlaset.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlaset.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlascl.lo 3rdparty/bicpl-surface/bicpl_clapack/dlascl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlascl.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlascl.o
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c: In function 'bicpl_dlascl_':
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:125:37: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  125 |     } else if (*n < 0 || itype == 4 && *n != *m || itype == 5 && *n != *m) {
      |                          ~~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:125:63: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  125 |     } else if (*n < 0 || itype == 4 && *n != *m || itype == 5 && *n != *m) {
      |                                                    ~~~~~~~~~~~^~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:137:76: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  137 |             if (*ku < 0 || *ku > max(i__1,0) || (itype == 4 || itype == 5) &&
      |                                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
  138 |                     *kl != *ku) {
      |                     ~~~~~~~~~~                                              
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:140:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  140 |             } else if (itype == 4 && *lda < *kl + 1 || itype == 5 && *lda < *
      |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dlascl.c:141:42: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  141 |                     ku + 1 || itype == 6 && *lda < (*kl << 1) + *ku + 1) {
      |                               ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlassq.lo 3rdparty/bicpl-surface/bicpl_clapack/dlassq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlassq.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlassq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasr.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.lo 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c -o 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.o
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c: In function 'bicpl_dgesvd_':
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:252:62: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  252 |     } else if (! (wntva || wntvs || wntvo || wntvn) || wntvo && wntuo) {
      |                                                        ~~~~~~^~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:260:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  260 |     } else if (*ldu < 1 || wntuas && *ldu < *m) {
      |                            ~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:262:35: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  262 |     } else if (*ldvt < 1 || wntva && *ldvt < *n || wntvs && *ldvt < minmn) {
      |                             ~~~~~~^~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dgesvd.c:262:58: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  262 |     } else if (*ldvt < 1 || wntva && *ldvt < *n || wntvs && *ldvt < minmn) {
      |                                                    ~~~~~~^~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.lo 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.o
3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c: In function 'bicpl_dorgbr_':
3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c:139:32: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  139 |     } else if (*n < 0 || wantq && (*n > *m || *n < min(*m,*k)) || ! wantq && (
      |                          ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/dorgbr.c:139:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  139 |     } else if (*n < 0 || wantq && (*n > *m || *n < min(*m,*k)) || ! wantq && (
      |                                                                   ~~~~~~~~^~~~
  140 |             *m > *n || *m < min(*n,*k))) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~                                    
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorglq.lo 3rdparty/bicpl-surface/bicpl_clapack/dorglq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorglq.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorglq.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c: In function 'bicpl_dorm2r_':
3rdparty/bicpl-surface/bicpl_clapack/dorm2r.c:162:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  162 |     if (left && ! notran || ! left && notran) {
      |         ~~~~~^~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dormbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dormbr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dormbr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dormbr.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/bicpl_clapack/dormbr.c: In function 'bicpl_dormbr_':
3rdparty/bicpl-surface/bicpl_clapack/dormbr.c:198:20: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  198 |         if (applyq && *lda < max(1,nq) || ! applyq && *lda < max(i__1,i__2)) {
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dorml2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorml2.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dorml2.c -o 3rdparty/bicpl-surface/bicpl_clapack/dorml2.o
3rdparty/bicpl-surface/bicpl_clapack/dorml2.c: In function 'bicpl_dorml2_':
3rdparty/bicpl-surface/bicpl_clapack/dorml2.c:158:14: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  158 |     if (left && notran || ! left && ! notran) {
      |         ~~~~~^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dormqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dormqr.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dormqr.c -o 3rdparty/bicpl-surface/bicpl_clapack/dormqr.o
3rdparty/bicpl-surface/bicpl_clapack/dormqr.c: In function 'bicpl_dormqr_':
3rdparty/bicpl-surface/bicpl_clapack/dormqr.c:245:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  245 |         if (left && ! notran || ! left && notran) {
      |             ~~~~~^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/drot.lo 3rdparty/bicpl-surface/bicpl_clapack/drot.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/drot.c -o 3rdparty/bicpl-surface/bicpl_clapack/drot.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dormlq.lo 3rdparty/bicpl-surface/bicpl_clapack/dormlq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dormlq.c -o 3rdparty/bicpl-surface/bicpl_clapack/dormlq.o
3rdparty/bicpl-surface/bicpl_clapack/dormlq.c: In function 'bicpl_dormlq_':
3rdparty/bicpl-surface/bicpl_clapack/dormlq.c:247:18: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  247 |         if (left && notran || ! left && ! notran) {
      |             ~~~~~^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dscal.lo 3rdparty/bicpl-surface/bicpl_clapack/dscal.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dscal.c -o 3rdparty/bicpl-surface/bicpl_clapack/dscal.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dswap.lo 3rdparty/bicpl-surface/bicpl_clapack/dswap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dswap.c -o 3rdparty/bicpl-surface/bicpl_clapack/dswap.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/exit_.lo 3rdparty/bicpl-surface/bicpl_clapack/exit_.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/exit_.c -o 3rdparty/bicpl-surface/bicpl_clapack/exit_.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.lo 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.c -o 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.c -o 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/lsame.lo 3rdparty/bicpl-surface/bicpl_clapack/lsame.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/lsame.c -o 3rdparty/bicpl-surface/bicpl_clapack/lsame.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/bicpl_clapack/lsame.c: In function 'bicpl_lsame_':
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:72:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   72 |         if (inta >= 129 && inta <= 137 || inta >= 145 && inta <= 153 || inta
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:73:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   72 |         if (inta >= 129 && inta <= 137 || inta >= 145 && inta <= 153 || inta
      |                                                                         ~~~~
   73 |                 >= 162 && inta <= 169) {
      |                 ~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:76:25: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   76 |         if (intb >= 129 && intb <= 137 || intb >= 145 && intb <= 153 || intb
      |             ~~~~~~~~~~~~^~~~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/lsame.c:77:24: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
   76 |         if (intb >= 129 && intb <= 137 || intb >= 145 && intb <= 153 || intb
      |                                                                         ~~~~
   77 |                 >= 162 && intb <= 169) {
      |                 ~~~~~~~^~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.lo 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c -o 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c: In function 'bicpl_ilaenv_':
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:173:23: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  173 |         if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >= 162 &&
      |             ~~~~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:173:75: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  173 |         if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >= 162 &&
      |                                                                 ~~~~~~~~~~^~
  174 |                 ic <= 169) {
      |                 ~~~~~~~~~                                                  
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:178:31: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  178 |                 if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >=
      |                     ~~~~~~~~~~^~~~~~~~~~~~
3rdparty/bicpl-surface/bicpl_clapack/ilaenv.c:179:29: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
  178 |                 if (ic >= 129 && ic <= 137 || ic >= 145 && ic <= 153 || ic >=
      |                                                                         ~~~~~
  179 |                         162 && ic <= 169) {
      |                         ~~~~^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_di.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_di.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/pow_di.c -o 3rdparty/bicpl-surface/bicpl_clapack/pow_di.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cat.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/s_cat.c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cat.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.c -o 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/xerbla.lo 3rdparty/bicpl-surface/bicpl_clapack/xerbla.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/xerbla.c -o 3rdparty/bicpl-surface/bicpl_clapack/xerbla.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/bicpl-surface/bicpl_clapack/s_copy.lo 3rdparty/bicpl-surface/bicpl_clapack/s_copy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/bicpl-surface/bicpl_clapack/s_copy.c -o 3rdparty/bicpl-surface/bicpl_clapack/s_copy.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/dartel/diffeopoly.lo 3rdparty/dartel/diffeopoly.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/dartel/diffeopoly.c -o 3rdparty/dartel/diffeopoly.o
3rdparty/dartel/diffeopoly.c: In function 'expdef_poly':
3rdparty/dartel/diffeopoly.c:321:23: warning: unused variable 'v' [-Wunused-variable]
  321 |             double u, v, px, nx, py, ny;
      |                       ^
3rdparty/dartel/diffeopoly.c:321:20: warning: unused variable 'u' [-Wunused-variable]
  321 |             double u, v, px, nx, py, ny;
      |                    ^
3rdparty/dartel/diffeopoly.c:320:34: warning: unused variable 'ndy' [-Wunused-variable]
  320 |             Point pdx, ndx, pdy, ndy;
      |                                  ^~~
3rdparty/dartel/diffeopoly.c:320:29: warning: unused variable 'pdy' [-Wunused-variable]
  320 |             Point pdx, ndx, pdy, ndy;
      |                             ^~~
3rdparty/dartel/diffeopoly.c:320:24: warning: unused variable 'ndx' [-Wunused-variable]
  320 |             Point pdx, ndx, pdy, ndy;
      |                        ^~~
3rdparty/dartel/diffeopoly.c:320:19: warning: unused variable 'pdx' [-Wunused-variable]
  320 |             Point pdx, ndx, pdy, ndy;
      |                   ^~~
3rdparty/dartel/diffeopoly.c:308:12: warning: unused variable 'j' [-Wunused-variable]
  308 |     int i, j;
      |            ^
3rdparty/dartel/diffeopoly.c: In function 'expdefdet_poly':
3rdparty/dartel/diffeopoly.c:396:19: warning: unused variable 'v' [-Wunused-variable]
  396 |         double u, v, px, nx, py, ny;
      |                   ^
3rdparty/dartel/diffeopoly.c:396:16: warning: unused variable 'u' [-Wunused-variable]
  396 |         double u, v, px, nx, py, ny;
      |                ^
3rdparty/dartel/diffeopoly.c:395:30: warning: unused variable 'ndy' [-Wunused-variable]
  395 |         Point pdx, ndx, pdy, ndy;
      |                              ^~~
3rdparty/dartel/diffeopoly.c:395:25: warning: unused variable 'pdy' [-Wunused-variable]
  395 |         Point pdx, ndx, pdy, ndy;
      |                         ^~~
3rdparty/dartel/diffeopoly.c:395:20: warning: unused variable 'ndx' [-Wunused-variable]
  395 |         Point pdx, ndx, pdy, ndy;
      |                    ^~~
3rdparty/dartel/diffeopoly.c:395:15: warning: unused variable 'pdx' [-Wunused-variable]
  395 |         Point pdx, ndx, pdy, ndy;
      |               ^~~
3rdparty/dartel/diffeopoly.c:383:12: warning: unused variable 'j' [-Wunused-variable]
  383 |     int i, j;
      |            ^
3rdparty/dartel/diffeopoly.c: In function 'jac_div_smalldef_poly':
3rdparty/dartel/diffeopoly.c:452:19: warning: unused variable 'v' [-Wunused-variable]
  452 |         double u, v, idt, km1, kp1;
      |                   ^
3rdparty/dartel/diffeopoly.c:452:16: warning: unused variable 'u' [-Wunused-variable]
  452 |         double u, v, idt, km1, kp1;
      |                ^
3rdparty/dartel/diffeopoly.c:451:20: warning: unused variable 'op1' [-Wunused-variable]
  451 |         Point om1, op1;
      |                    ^~~
3rdparty/dartel/diffeopoly.c:451:15: warning: unused variable 'om1' [-Wunused-variable]
  451 |         Point om1, op1;
      |               ^~~
3rdparty/dartel/diffeopoly.c: In function 'init_objfun_poly':
3rdparty/dartel/diffeopoly.c:497:41: warning: unused variable 'dy2' [-Wunused-variable]
  497 |         double dx0, dx1, dx2, dy0, dy1, dy2;
      |                                         ^~~
3rdparty/dartel/diffeopoly.c:497:36: warning: unused variable 'dy1' [-Wunused-variable]
  497 |         double dx0, dx1, dx2, dy0, dy1, dy2;
      |                                    ^~~
3rdparty/dartel/diffeopoly.c:497:26: warning: unused variable 'dx2' [-Wunused-variable]
  497 |         double dx0, dx1, dx2, dy0, dy1, dy2;
      |                          ^~~
3rdparty/dartel/diffeopoly.c:497:21: warning: unused variable 'dx1' [-Wunused-variable]
  497 |         double dx0, dx1, dx2, dy0, dy1, dy2;
      |                     ^~~
3rdparty/dartel/diffeopoly.c:496:30: warning: unused variable 'o22' [-Wunused-variable]
  496 |         Point o11, o12, o21, o22;
      |                              ^~~
3rdparty/dartel/diffeopoly.c:496:25: warning: unused variable 'o21' [-Wunused-variable]
  496 |         Point o11, o12, o21, o22;
      |                         ^~~
3rdparty/dartel/diffeopoly.c:496:20: warning: unused variable 'o12' [-Wunused-variable]
  496 |         Point o11, o12, o21, o22;
      |                    ^~~
3rdparty/dartel/diffeopoly.c:496:15: warning: unused variable 'o11' [-Wunused-variable]
  496 |         Point o11, o12, o21, o22;
      |               ^~~
3rdparty/dartel/diffeopoly.c:495:16: warning: unused variable 'k11' [-Wunused-variable]
  495 |         double k11, k12, k21, k22;
      |                ^~~
3rdparty/dartel/diffeopoly.c:494:20: warning: unused variable 'iy' [-Wunused-variable]
  494 |         int    ix, iy;
      |                    ^~
3rdparty/dartel/diffeopoly.c:494:16: warning: unused variable 'ix' [-Wunused-variable]
  494 |         int    ix, iy;
      |                ^~
3rdparty/dartel/diffeopoly.c: In function 'smalldef_jac_poly':
3rdparty/dartel/diffeopoly.c:544:19: warning: unused variable 'v' [-Wunused-variable]
  544 |         double u, v, km1, kp1;
      |                   ^
3rdparty/dartel/diffeopoly.c:544:16: warning: unused variable 'u' [-Wunused-variable]
  544 |         double u, v, km1, kp1;
      |                ^
3rdparty/dartel/diffeopoly.c:543:20: warning: unused variable 'op1' [-Wunused-variable]
  543 |         Point om1, op1;
      |                    ^~~
3rdparty/dartel/diffeopoly.c:543:15: warning: unused variable 'om1' [-Wunused-variable]
  543 |         Point om1, op1;
      |               ^~~
In file included from 3rdparty/dartel/diffeopoly.c:6:
3rdparty/dartel/dartel.h: At top level:
3rdparty/dartel/dartel.h:85:12: warning: 'neumann' declared 'static' but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
3rdparty/dartel/dartel.h:117:13: warning: 'zeros' declared 'static' but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
3rdparty/dartel/dartel.h:118:13: warning: 'copy' declared 'static' but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
3rdparty/dartel/dartel.h:119:13: warning: 'addto' declared 'static' but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/nii2mesh/quadric.lo 3rdparty/nii2mesh/quadric.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/nii2mesh/quadric.c -o 3rdparty/nii2mesh/quadric.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/dartel/diffeosphere.lo 3rdparty/dartel/diffeosphere.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/dartel/diffeosphere.c -o 3rdparty/dartel/diffeosphere.o
3rdparty/dartel/diffeosphere.c: In function 'composition':
3rdparty/dartel/diffeosphere.c:30: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
   30 | #pragma omp parallel for schedule(static)
3rdparty/dartel/diffeosphere.c: In function 'composition_jacobian':
3rdparty/dartel/diffeosphere.c:96: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
   96 | #pragma omp parallel for schedule(static) private(jb)
3rdparty/dartel/diffeosphere.c: In function 'composition_detjac':
3rdparty/dartel/diffeosphere.c:184: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  184 | #pragma omp parallel for schedule(static) private(jb)
3rdparty/dartel/diffeosphere.c: In function 'expdef':
3rdparty/dartel/diffeosphere.c:272: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  272 | #pragma omp parallel for collapse(2) schedule(static) private(i)
3rdparty/dartel/diffeosphere.c:310: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  310 | #pragma omp parallel for collapse(2) schedule(static) private(i)
3rdparty/dartel/diffeosphere.c: In function 'expdefdet':
3rdparty/dartel/diffeosphere.c:358: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  358 | #pragma omp parallel for collapse(2) schedule(static) private(i)
3rdparty/dartel/diffeosphere.c:400: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  400 | #pragma omp parallel for collapse(2) schedule(static) private(i)
3rdparty/dartel/diffeosphere.c: In function 'jac_div_smalldef':
3rdparty/dartel/diffeosphere.c:450: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  450 | #pragma omp parallel for collapse(2) schedule(static) private(j0)
3rdparty/dartel/diffeosphere.c: In function 'initialise_objfun':
3rdparty/dartel/diffeosphere.c:504: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  504 | #pragma omp parallel for schedule(static) reduction(+ : ssl) firstprivate(dt)
3rdparty/dartel/diffeosphere.c: In function 'initialise_objfun_mn':
3rdparty/dartel/diffeosphere.c:562: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  562 | #pragma omp parallel for schedule(static) reduction(+ : ssl)
3rdparty/dartel/diffeosphere.c: In function 'smalldef_jac':
3rdparty/dartel/diffeosphere.c:701: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  701 | #pragma omp parallel for collapse(2) schedule(static) private(i)
3rdparty/dartel/diffeosphere.c: In function 'squaring':
3rdparty/dartel/diffeosphere.c:736: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  736 | #pragma omp parallel for schedule(static)
In file included from 3rdparty/dartel/diffeosphere.c:7:
3rdparty/dartel/dartel.h: At top level:
3rdparty/dartel/dartel.h:85:12: warning: 'neumann' declared 'static' but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
3rdparty/dartel/dartel.h:117:13: warning: 'zeros' declared 'static' but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
3rdparty/dartel/dartel.h:118:13: warning: 'copy' declared 'static' but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
3rdparty/dartel/dartel.h:119:13: warning: 'addto' declared 'static' but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/makeweights.lo 3rdparty/s2kit10/makeweights.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/makeweights.c -o 3rdparty/s2kit10/makeweights.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/pmls.lo 3rdparty/s2kit10/pmls.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/pmls.c -o 3rdparty/s2kit10/pmls.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/dartel/optimizersphere.lo 3rdparty/dartel/optimizersphere.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/dartel/optimizersphere.c -o 3rdparty/dartel/optimizersphere.o
3rdparty/dartel/optimizersphere.c: In function 'sumsq_le':
3rdparty/dartel/optimizersphere.c:86: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
   86 | #pragma omp parallel for collapse(2) private(i) reduction(+ : ss)
3rdparty/dartel/optimizersphere.c: In function 'LtLf_le':
3rdparty/dartel/optimizersphere.c:126: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  126 | #pragma omp parallel for collapse(2) private(i)
3rdparty/dartel/optimizersphere.c:108:30: warning: unused variable 'ip1' [-Wunused-variable]
  108 |     int i, j, jm1, jp1, im1, ip1;
      |                              ^~~
3rdparty/dartel/optimizersphere.c:108:25: warning: unused variable 'im1' [-Wunused-variable]
  108 |     int i, j, jm1, jp1, im1, ip1;
      |                         ^~~
3rdparty/dartel/optimizersphere.c:108:20: warning: unused variable 'jp1' [-Wunused-variable]
  108 |     int i, j, jm1, jp1, im1, ip1;
      |                    ^~~
3rdparty/dartel/optimizersphere.c:108:15: warning: unused variable 'jm1' [-Wunused-variable]
  108 |     int i, j, jm1, jp1, im1, ip1;
      |               ^~~
3rdparty/dartel/optimizersphere.c: In function 'sumsq_me':
3rdparty/dartel/optimizersphere.c:269: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  269 | #pragma omp parallel for private(i) reduction(+ : ss)
3rdparty/dartel/optimizersphere.c:273:28: warning: unused variable 'ip1' [-Wunused-variable]
  273 |         int jm1, jp1, im1, ip1;
      |                            ^~~
3rdparty/dartel/optimizersphere.c:273:23: warning: unused variable 'im1' [-Wunused-variable]
  273 |         int jm1, jp1, im1, ip1;
      |                       ^~~
3rdparty/dartel/optimizersphere.c:273:18: warning: unused variable 'jp1' [-Wunused-variable]
  273 |         int jm1, jp1, im1, ip1;
      |                  ^~~
3rdparty/dartel/optimizersphere.c:273:13: warning: unused variable 'jm1' [-Wunused-variable]
  273 |         int jm1, jp1, im1, ip1;
      |             ^~~
3rdparty/dartel/optimizersphere.c:263:15: warning: unused variable 'm' [-Wunused-variable]
  263 |     int i, j, m = dm[0] * dm[1];
      |               ^
3rdparty/dartel/optimizersphere.c: In function 'LtLf_me':
3rdparty/dartel/optimizersphere.c:315: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  315 | #pragma omp parallel for collapse(2) private(i)
3rdparty/dartel/optimizersphere.c: In function 'sumsq_be':
3rdparty/dartel/optimizersphere.c:440: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  440 | #pragma omp parallel for private(i) reduction(+ : ss)
3rdparty/dartel/optimizersphere.c: In function 'LtLf_be':
3rdparty/dartel/optimizersphere.c:520: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  520 | #pragma omp parallel for private(i, pgx, pgy, pfx, pfy, jm1, jp1, jm2, jp2, im1, ip1, im2, ip2)
3rdparty/dartel/optimizersphere.c: In function 'resize':
3rdparty/dartel/optimizersphere.c:871:13: warning: unused variable 'ap' [-Wunused-variable]
  871 |     double *ap, *bp, *cp;
      |             ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/FST_semi_fly.lo 3rdparty/s2kit10/FST_semi_fly.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/FST_semi_fly.c -o 3rdparty/s2kit10/FST_semi_fly.o
3rdparty/s2kit10/FST_semi_fly.c: In function 'Conv2Sphere_semi_fly':
3rdparty/s2kit10/FST_semi_fly.c:861:7: warning: variable 'size' set but not used [-Wunused-but-set-variable=]
  861 |   int size ;
      |       ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/cospmls.lo 3rdparty/s2kit10/cospmls.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/cospmls.c -o 3rdparty/s2kit10/cospmls.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/seminaive.lo 3rdparty/s2kit10/seminaive.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/seminaive.c -o 3rdparty/s2kit10/seminaive.o
3rdparty/s2kit10/seminaive.c: In function 'SemiNaiveReduced':
3rdparty/s2kit10/seminaive.c:275:10: warning: variable 'd_bw' set but not used [-Wunused-but-set-variable=]
  275 |   double d_bw;
      |          ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/naive_synthesis.lo 3rdparty/s2kit10/naive_synthesis.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/naive_synthesis.c -o 3rdparty/s2kit10/naive_synthesis.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o 3rdparty/s2kit10/primitive.lo 3rdparty/s2kit10/primitive.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c 3rdparty/s2kit10/primitive.c -o 3rdparty/s2kit10/primitive.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_CorrectThicknessFolding.lo Lib/CAT_CorrectThicknessFolding.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_CorrectThicknessFolding.c -o Lib/CAT_CorrectThicknessFolding.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_ROIStats.lo Lib/CAT_ROIStats.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_ROIStats.c -o Lib/CAT_ROIStats.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfWarpDartel.lo Lib/CAT_SurfWarpDartel.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfWarpDartel.c -o Lib/CAT_SurfWarpDartel.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
In file included from ./Include/CAT_SurfWarpDartel.h:12,
                 from Lib/CAT_SurfWarpDartel.c:10:
./3rdparty/dartel/dartel.h:85:12: warning: 'neumann' declared 'static' but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
./3rdparty/dartel/dartel.h:117:13: warning: 'zeros' declared 'static' but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
./3rdparty/dartel/dartel.h:118:13: warning: 'copy' declared 'static' but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
./3rdparty/dartel/dartel.h:119:13: warning: 'addto' declared 'static' but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Vol2SurfUtils.lo Lib/CAT_Vol2SurfUtils.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Vol2SurfUtils.c -o Lib/CAT_Vol2SurfUtils.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_PpmSulci.lo Lib/CAT_PpmSulci.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_PpmSulci.c -o Lib/CAT_PpmSulci.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Sheetness.lo Lib/CAT_Sheetness.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Sheetness.c -o Lib/CAT_Sheetness.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_AverageSurf.lo Lib/CAT_AverageSurf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_AverageSurf.c -o Lib/CAT_AverageSurf.o
Lib/CAT_AverageSurf.c: In function 'CAT_SurfComputeRMS':
Lib/CAT_AverageSurf.c:99:12: warning: unused variable 'sum_sq' [-Wunused-variable]
   99 |     double sum_sq;
      |            ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Calc.lo Lib/CAT_Calc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Calc.c -o Lib/CAT_Calc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_WarpDemons.lo Lib/CAT_WarpDemons.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_WarpDemons.c -o Lib/CAT_WarpDemons.o
In file included from Lib/CAT_WarpDemons.c:27:
./3rdparty/dartel/dartel.h:85:12: warning: 'neumann' declared 'static' but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
./3rdparty/dartel/dartel.h:117:13: warning: 'zeros' declared 'static' but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
./3rdparty/dartel/dartel.h:118:13: warning: 'copy' declared 'static' but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
./3rdparty/dartel/dartel.h:119:13: warning: 'addto' declared 'static' but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_AverageValues.lo Lib/CAT_AverageValues.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_AverageValues.c -o Lib/CAT_AverageValues.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfPialWhite.lo Lib/CAT_SurfPialWhite.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfPialWhite.c -o Lib/CAT_SurfPialWhite.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_VolPbt.lo Lib/CAT_VolPbt.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_VolPbt.c -o Lib/CAT_VolPbt.o
Lib/CAT_VolPbt.c: In function 'CAT_VolComputePbt':
Lib/CAT_VolPbt.c:508:16: warning: variable 'ramp_vox' set but not used [-Wunused-but-set-variable=]
  508 |         double ramp_vox = 0.0;
      |                ^~~~~~~~
Lib/CAT_VolPbt.c: In function 'projection_based_thickness':
Lib/CAT_VolPbt.c:1225:17: warning: unused variable 'CSFDi' [-Wunused-variable]
 1225 |     float GMTi, CSFDi;
      |                 ^~~~~
Lib/CAT_VolPbt.c:1225:11: warning: unused variable 'GMTi' [-Wunused-variable]
 1225 |     float GMTi, CSFDi;
      |           ^~~~
Lib/CAT_VolPbt.c:1224:19: warning: unused variable 'DI' [-Wunused-variable]
 1224 |     float DN[sN], DI[sN], GMTN[sN], WMDN[sN], SEGN[sN], DNm;
      |                   ^~
Lib/CAT_VolPbt.c:1224:11: warning: unused variable 'DN' [-Wunused-variable]
 1224 |     float DN[sN], DI[sN], GMTN[sN], WMDN[sN], SEGN[sN], DNm;
      |           ^~
Lib/CAT_VolPbt.c: In function 'blood_vessel_correction_pve_float':
Lib/CAT_VolPbt.c:1509:53: warning: unused variable 'local_replace' [-Wunused-variable]
 1509 |     float *F, *YwmA, *YwmB, *Ywm, *Yd, *Yp0s, *Ynn, local_replace;
      |                                                     ^~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfPialProfile.lo Lib/CAT_SurfPialProfile.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfPialProfile.c -o Lib/CAT_SurfPialProfile.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfLaplacian.lo Lib/CAT_SurfLaplacian.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfLaplacian.c -o Lib/CAT_SurfLaplacian.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Math.lo Lib/CAT_Math.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Math.c -o Lib/CAT_Math.o
Lib/CAT_Math.c: In function 'pinv':
Lib/CAT_Math.c:20:15: warning: unused variable 'k' [-Wunused-variable]
   20 |     int i, j, k, r;
      |               ^
Lib/CAT_Math.c: In function 'convert_input_type':
Lib/CAT_Math.c:240:19: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  240 |         buffer[i] = tmp;
      |         ~~~~~~~~~~^~~~~
Lib/CAT_Math.c:199:12: note: 'tmp' was declared here
  199 |     double tmp;
      |            ^~~
Lib/CAT_Math.c: In function 'convert_input_type_float':
Lib/CAT_Math.c:299:19: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  299 |         buffer[i] = tmp;
      |         ~~~~~~~~~~^~~~~
Lib/CAT_Math.c:258:11: note: 'tmp' was declared here
  258 |     float tmp;
      |           ^~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_GlmFormula.lo Lib/CAT_GlmFormula.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_GlmFormula.c -o Lib/CAT_GlmFormula.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfInfo.lo Lib/CAT_SurfInfo.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfInfo.c -o Lib/CAT_SurfInfo.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Curvature.lo Lib/CAT_Curvature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Curvature.c -o Lib/CAT_Curvature.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_Curvature.c: In function 'get_polygon_vertex_curvatures_cg':
Lib/CAT_Curvature.c:296:21: warning: unused variable 'progress' [-Wunused-variable]
  296 |     progress_struct progress;
      |                     ^~~~~~~~
Lib/CAT_Curvature.c: In function 'compute_sulcus_depth':
Lib/CAT_Curvature.c:449:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  449 |     int i, poly;
      |            ^~~~
Lib/CAT_Curvature.c: In function 'compute_convexity':
Lib/CAT_Curvature.c:623:45: warning: unused variable 'nc' [-Wunused-variable]
  623 |     double nx, ny, nz, x, y, z, sx, sy, sz, nc;
      |                                             ^~
In file included from Lib/CAT_Curvature.c:18:
./Include/CAT_ConvexHull.h: At top level:
./Include/CAT_ConvexHull.h:40:15: warning: 'get_points_of_region' declared 'static' but never defined [-Wunused-function]
   40 | private  int  get_points_of_region(polygons_struct  *, Point ** );
      |               ^~~~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:41:16: warning: 'get_convex_hull' declared 'static' but never defined [-Wunused-function]
   41 | private  void  get_convex_hull(int, Point *, polygons_struct * );
      |                ^~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:42:15: warning: 'get_convex_hull_2d' declared 'static' but never defined [-Wunused-function]
   42 | private  int  get_convex_hull_2d(int, float *, float *, int *, int, int );
      |               ^~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:43:13: warning: 'get_surface_point_normals' declared 'static' but never defined [-Wunused-function]
   43 | private int get_surface_point_normals( polygons_struct *, int *, Point *[],
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:45:13: warning: 'get_surface_neighbours' declared 'static' but never defined [-Wunused-function]
   45 | private int get_surface_neighbours( polygons_struct *, int *[],
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from Lib/CAT_Curvature.c:19:
./Include/CAT_DepthPotential.h:37:14: warning: 'gauss_seidel' declared 'static' but never defined [-Wunused-function]
   37 | private void gauss_seidel( int, int *, int *, double *, double *,
      |              ^~~~~~~~~~~~
./Include/CAT_DepthPotential.h:39:14: warning: 'init_csr_matrix' declared 'static' but never defined [-Wunused-function]
   39 | private void init_csr_matrix( int, int *, int **, struct csr_matrix * );
      |              ^~~~~~~~~~~~~~~
./Include/CAT_DepthPotential.h:40:14: warning: 'free_csr_matrix' declared 'static' but never defined [-Wunused-function]
   40 | private void free_csr_matrix( struct csr_matrix * );
      |              ^~~~~~~~~~~~~~~
./Include/CAT_DepthPotential.h:41:14: warning: 'assemble' declared 'static' but never defined [-Wunused-function]
   41 | private void assemble( double, int, int, struct csr_matrix * );
      |              ^~~~~~~~
./Include/CAT_DepthPotential.h:42:14: warning: 'stable_normals' declared 'static' but never defined [-Wunused-function]
   42 | private void stable_normals( int, Point [], Vector [], int *, int ** );
      |              ^~~~~~~~~~~~~~
./Include/CAT_DepthPotential.h:43:18: warning: 'compute_mean_curvature' declared 'static' but never defined [-Wunused-function]
   43 | private double * compute_mean_curvature( int, Point [], double *,
      |                  ^~~~~~~~~~~~~~~~~~~~~~
./Include/CAT_DepthPotential.h:45:14: warning: 'cot_laplacian_operator' declared 'static' but never defined [-Wunused-function]
   45 | private void cot_laplacian_operator( int, Point [], struct csr_matrix *,
      |              ^~~~~~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:28:12: warning: 'KeyFactor' defined but not used [-Wunused-variable]
   28 | static int KeyFactor = 100000;
      |            ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Warp.lo Lib/CAT_Warp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Warp.c -o Lib/CAT_Warp.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_Warp.c: In function 'apply_uv_warp':
Lib/CAT_Warp.c:305:15: warning: unused variable 'ind' [-Wunused-variable]
  305 |     int i, p, ind;
      |               ^~~
Lib/CAT_Warp.c:303:18: warning: unused variable 'indy' [-Wunused-variable]
  303 |     double indx, indy;
      |                  ^~~~
Lib/CAT_Warp.c:303:12: warning: unused variable 'indx' [-Wunused-variable]
  303 |     double indx, indy;
      |            ^~~~
Lib/CAT_Warp.c:300:19: warning: unused variable 'unit_point' [-Wunused-variable]
  300 |     Point centre, unit_point, *new_points, trans_point;
      |                   ^~~~~~~~~~
Lib/CAT_Warp.c:300:11: warning: unused variable 'centre' [-Wunused-variable]
  300 |     Point centre, unit_point, *new_points, trans_point;
      |           ^~~~~~
Lib/CAT_Warp.c: In function 'apply_poly_warp':
Lib/CAT_Warp.c:362:15: warning: unused variable 'ind' [-Wunused-variable]
  362 |     int i, p, ind;
      |               ^~~
Lib/CAT_Warp.c:361:18: warning: unused variable 'indy' [-Wunused-variable]
  361 |     double indx, indy;
      |                  ^~~~
Lib/CAT_Warp.c:361:12: warning: unused variable 'indx' [-Wunused-variable]
  361 |     double indx, indy;
      |            ^~~~
Lib/CAT_Warp.c:358:11: warning: unused variable 'centre' [-Wunused-variable]
  358 |     Point centre, unit_point, *new_points, trans_point;
      |           ^~~~~~
Lib/CAT_Warp.c: In function 'nelder_mead':
Lib/CAT_Warp.c:491:34: warning: 'lowest' may be used uninitialized [-Wmaybe-uninitialized]
  491 |     int highest, second_highest, lowest;
      |                                  ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Map.lo Lib/CAT_Map.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Map.c -o Lib/CAT_Map.o
Lib/CAT_Map.c: In function 'upsample_flow_field':
Lib/CAT_Map.c:408:16: warning: unused variable 'fy' [-Wunused-variable]
  408 |     double fx, fy;
      |                ^~
Lib/CAT_Map.c:408:12: warning: unused variable 'fx' [-Wunused-variable]
  408 |     double fx, fy;
      |            ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Surf.lo Lib/CAT_Surf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Surf.c -o Lib/CAT_Surf.o
Lib/CAT_Surf.c: In function 'get_surface_ratio':
Lib/CAT_Surf.c:114:10: warning: unused variable 'str' [-Wunused-variable]
  114 |     char str[512];
      |          ^~~
Lib/CAT_Surf.c: In function 'get_area_of_points_normalized_to_sphere':
Lib/CAT_Surf.c:221:12: warning: variable 'sphere_area' set but not used [-Wunused-but-set-variable=]
  221 |     double sphere_area, native_area, *area_values_resampled, *areas_sphere, area_sum = 0.0;
      |            ^~~~~~~~~~~
Lib/CAT_Surf.c: In function 'compute_point_distance_mean':
Lib/CAT_Surf.c:688:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  688 |     int i, poly;
      |            ^~~~
Lib/CAT_Surf.c: In function 'compute_point_hausdorff':
Lib/CAT_Surf.c:773:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  773 |     int i, poly;
      |            ^~~~
Lib/CAT_Surf.c: In function 'compute_point_distance':
Lib/CAT_Surf.c:837:12: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  837 |     int i, poly;
      |            ^~~~
Lib/CAT_Surf.c: In function 'areal_smoothing':
Lib/CAT_Surf.c:1045:13: warning: unused variable 'area_values' [-Wunused-variable]
 1045 |     double *area_values;
      |             ^~~~~~~~~~~
Lib/CAT_Surf.c: In function 'inflate_surface_and_smooth_fingers':
Lib/CAT_Surf.c:1289:9: warning: variable 'numDistortionAboveThresh' set but not used [-Wunused-but-set-variable=]
 1289 |     int numDistortionAboveThresh;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Surf.c: In function 'check_polygons_shape_integrity':
Lib/CAT_Surf.c:1672:19: warning: unused variable 'n_bad_points' [-Wunused-variable]
 1672 |     int n_errors, n_bad_points;
      |                   ^~~~~~~~~~~~
Lib/CAT_Surf.c:1672:9: warning: unused variable 'n_errors' [-Wunused-variable]
 1672 |     int n_errors, n_bad_points;
      |         ^~~~~~~~
Lib/CAT_Surf.c: In function 'central_to_pial':
Lib/CAT_Surf.c:1798:21: warning: unused variable 'val' [-Wunused-variable]
 1798 |     double x, y, z, val, length;
      |                     ^~~
Lib/CAT_Surf.c:1798:18: warning: unused variable 'z' [-Wunused-variable]
 1798 |     double x, y, z, val, length;
      |                  ^
Lib/CAT_Surf.c:1798:15: warning: unused variable 'y' [-Wunused-variable]
 1798 |     double x, y, z, val, length;
      |               ^
Lib/CAT_Surf.c:1798:12: warning: unused variable 'x' [-Wunused-variable]
 1798 |     double x, y, z, val, length;
      |            ^
Lib/CAT_Surf.c:1797:24: warning: unused variable 'dims' [-Wunused-variable]
 1797 |     int i, p, n_steps, dims[3];
      |                        ^~~~
Lib/CAT_Surf.c: In function 'get_distance_mesh_correction':
Lib/CAT_Surf.c:1925:12: warning: unused variable 'input' [-Wunused-variable]
 1925 |     float *input;
      |            ^~~~~
Lib/CAT_Surf.c: In function 'correct_mesh_folding':
Lib/CAT_Surf.c:1976:12: warning: unused variable 'distance' [-Wunused-variable]
 1976 |     double distance, eps = 1e-6, fwhm = 2.0;
      |            ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Smooth.lo Lib/CAT_Smooth.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Smooth.c -o Lib/CAT_Smooth.o
Lib/CAT_Smooth.c: In function 'heatkernel_blur_points':
Lib/CAT_Smooth.c:128:15: warning: unused variable 'n_pts' [-Wunused-variable]
  128 |     int i, c, n_pts, neigh;
      |               ^~~~~
Lib/CAT_Smooth.c: In function 'smooth_heatkernel':
Lib/CAT_Smooth.c:211:13: warning: unused variable 'values_present' [-Wunused-variable]
  211 |     BOOLEAN values_present;
      |             ^~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Octree.lo Lib/CAT_Octree.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Octree.c -o Lib/CAT_Octree.o
Lib/CAT_Octree.c: In function 'insert_triangle':
Lib/CAT_Octree.c:164:28: warning: unused variable 'cur' [-Wunused-variable]
  164 |     struct polynode *tmp, *cur;
      |                            ^~~
Lib/CAT_Octree.c: In function 'build_octree':
Lib/CAT_Octree.c:214:21: warning: unused variable 'nnodes' [-Wunused-variable]
  214 |     int t, i, size, nnodes;
      |                     ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Intersect.lo Lib/CAT_Intersect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Intersect.c -o Lib/CAT_Intersect.o
Lib/CAT_Intersect.c: In function 'find_near_intersections':
Lib/CAT_Intersect.c:196:13: warning: variable 'closest_index' set but not used [-Wunused-but-set-variable=]
  196 |         int closest_index = -1;
      |             ^~~~~~~~~~~~~
Lib/CAT_Intersect.c: In function 'smooth_selfintersections':
Lib/CAT_Intersect.c:846:11: warning: unused variable 'fp' [-Wunused-variable]
  846 |     FILE *fp;
      |           ^~
Lib/CAT_Intersect.c: In function 'remove_near_intersections':
Lib/CAT_Intersect.c:1303:12: warning: unused variable 'new_pts' [-Wunused-variable]
 1303 |     Point *new_pts;
      |            ^~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Resample.lo Lib/CAT_Resample.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Resample.c -o Lib/CAT_Resample.o
Lib/CAT_Resample.c: In function 'resample_values_sphere':
Lib/CAT_Resample.c:510:9: warning: unused variable 'i' [-Wunused-variable]
  510 |     int i;
      |         ^
Lib/CAT_Resample.c: In function 'resample_surface_to_target_sphere':
Lib/CAT_Resample.c:555:26: warning: unused variable 'neighbours' [-Wunused-variable]
  555 |     int *n_neighbours, **neighbours;
      |                          ^~~~~~~~~~
Lib/CAT_Resample.c:555:10: warning: unused variable 'n_neighbours' [-Wunused-variable]
  555 |     int *n_neighbours, **neighbours;
      |          ^~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SurfaceIO.lo Lib/CAT_SurfaceIO.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SurfaceIO.c -o Lib/CAT_SurfaceIO.o
Lib/CAT_SurfaceIO.c: In function 'freadInt':
Lib/CAT_SurfaceIO.c:306:9: warning: variable 'count' set but not used [-Wunused-but-set-variable=]
  306 |     int count;
      |         ^~~~~
Lib/CAT_SurfaceIO.c: In function 'freadFloat':
Lib/CAT_SurfaceIO.c:318:9: warning: variable 'count' set but not used [-Wunused-but-set-variable=]
  318 |     int count;
      |         ^~~~~
Lib/CAT_SurfaceIO.c: In function 'input_gifti':
Lib/CAT_SurfaceIO.c:1506:11: warning: unused variable 'point' [-Wunused-variable]
 1506 |     Point point;
      |           ^~~~~
Lib/CAT_SurfaceIO.c: In function 'input_gifti_curv':
Lib/CAT_SurfaceIO.c:1839:19: warning: unused variable 'numDA' [-Wunused-variable]
 1839 |     int k, valid, numDA;
      |                   ^~~~~
Lib/CAT_SurfaceIO.c: In function 'output_freesurfer':
Lib/CAT_SurfaceIO.c:1933:19: warning: unused variable 'buffer' [-Wunused-variable]
 1933 |     unsigned char buffer;
      |                   ^~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_freesurfer_curv':
Lib/CAT_SurfaceIO.c:2066:19: warning: variable 'fnum' set but not used [-Wunused-but-set-variable=]
 2066 |     int i, magic, fnum, vals_per_vertex;
      |                   ^~~~
Lib/CAT_SurfaceIO.c: In function 'input_txt_values':
Lib/CAT_SurfaceIO.c:2433:12: warning: unused variable 'status' [-Wunused-variable]
 2433 |     Status status;
      |            ^~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_values_any_format':
Lib/CAT_SurfaceIO.c:2462:11: warning: unused variable 'fp' [-Wunused-variable]
 2462 |     FILE *fp;
      |           ^~
Lib/CAT_SurfaceIO.c: In function 'read_annotation_table':
Lib/CAT_SurfaceIO.c:2643:18: warning: variable 'structure' set but not used [-Wunused-but-set-variable=]
 2643 |     int version, structure;
      |                  ^~~~~~~~~
Lib/CAT_SurfaceIO.c:2642:35: warning: variable 'tag' set but not used [-Wunused-but-set-variable=]
 2642 |     int i, flag, label, len, vno, tag, *array;
      |                                   ^~~
Lib/CAT_SurfaceIO.c:2642:12: warning: variable 'flag' set but not used [-Wunused-but-set-variable=]
 2642 |     int i, flag, label, len, vno, tag, *array;
      |            ^~~~
Lib/CAT_SurfaceIO.c:2641:30: warning: unused variable 'struct_names' [-Wunused-variable]
 2641 |     char annot_name[1000], **struct_names;
      |                              ^~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'write_annotation_table':
Lib/CAT_SurfaceIO.c:2742:18: warning: unused variable 'structure' [-Wunused-variable]
 2742 |     int version, structure;
      |                  ^~~~~~~~~
Lib/CAT_SurfaceIO.c:2742:9: warning: unused variable 'version' [-Wunused-variable]
 2742 |     int version, structure;
      |         ^~~~~~~
Lib/CAT_SurfaceIO.c:2741:35: warning: unused variable 'tag' [-Wunused-variable]
 2741 |     int i, flag, label, len, vno, tag;
      |                                   ^~~
Lib/CAT_SurfaceIO.c:2741:30: warning: unused variable 'vno' [-Wunused-variable]
 2741 |     int i, flag, label, len, vno, tag;
      |                              ^~~
Lib/CAT_SurfaceIO.c:2741:25: warning: unused variable 'len' [-Wunused-variable]
 2741 |     int i, flag, label, len, vno, tag;
      |                         ^~~
Lib/CAT_SurfaceIO.c:2741:18: warning: unused variable 'label' [-Wunused-variable]
 2741 |     int i, flag, label, len, vno, tag;
      |                  ^~~~~
Lib/CAT_SurfaceIO.c:2741:12: warning: unused variable 'flag' [-Wunused-variable]
 2741 |     int i, flag, label, len, vno, tag;
      |            ^~~~
Lib/CAT_SurfaceIO.c:2740:12: warning: unused variable 'struct_names' [-Wunused-variable]
 2740 |     char **struct_names;
      |            ^~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_oogl':
Lib/CAT_SurfaceIO.c:690:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  690 |     fscanf(fp, "%s", line);
      |     ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:694:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  694 |         fscanf(fp, "%d %d %d", &polygons->n_points,
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  695 |                &polygons->n_items, &dummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:704:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  704 |             fscanf(fp, "%f %f %f\n", &Point_x(point),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  705 |                    &Point_y(point), &Point_z(point));
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:716:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
  716 |             fscanf(fp, "%d %d %d %d\n", &n_edges,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  717 |                    &polygons->indices[POINT_INDEX(
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  718 |                        polygons->end_indices, f, 0)],
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  719 |                    &polygons->indices[POINT_INDEX(
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  720 |                        polygons->end_indices, f, 1)],
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  721 |                    &polygons->indices[POINT_INDEX(
      |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  722 |                        polygons->end_indices, f, 2)]);
      |                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'read_gifti_image_in_dir':
Lib/CAT_SurfaceIO.c:1495:15: warning: ignoring return value of 'chdir' declared with attribute 'warn_unused_result' [-Wunused-result]
 1495 |         (void)chdir(saved_cwd);
      |               ^~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_freesurfer':
Lib/CAT_SurfaceIO.c:2015:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2015 |         fgets(line, 1024, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2016:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
 2016 |         fscanf(fp, "\n");
      |         ^~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_dx':
Lib/CAT_SurfaceIO.c:2139:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2139 |     fgets(line, 54, fp);
      |     ^~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2153:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2153 |         fgets(line, pos, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2161:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2161 |             fgets(line, 1000, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2166:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2166 |         fgets(line, 1000, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2167:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2167 |         fgets(line, 1000, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2168:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2168 |         fgets(line, 52, fp);
      |         ^~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2183:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2183 |             fgets(line, pos, fp);
      |             ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2201:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2201 |             fgets(line, 1000, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'input_dfs':
Lib/CAT_SurfaceIO.c:2255:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2255 |     fread(&dummy, sizeof(char), 12, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2256:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2256 |     fread(&hdr_size, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2257:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2257 |     fread(&mdoffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2258:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2258 |     fread(&pdoffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2259:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2259 |     fread(&polygons->n_points, 4, 1, fp); /* Number of triangles */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2260:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2260 |     fread(&polygons->n_items, 4, 1, fp);  /* Number of vertices */
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2263:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2263 |     fread(&nStrips, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2264:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2264 |     fread(&stripSize, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2265:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2265 |     fread(&normals, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2266:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2266 |     fread(&uvStart, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2267:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2267 |     fread(&vcoffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2268:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2268 |     fread(&labelOffset, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2269:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2269 |     fread(&vertexAttributes, 4, 1, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2271:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2271 |     fread(&pad2, sizeof(char), 124, fp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2288:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2288 |         fread(&tmp, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2294:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2294 |         fread(&tmp2, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2296:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2296 |         fread(&tmp2, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2298:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2298 |         fread(&tmp2, 4, 1, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'read_pgm':
Lib/CAT_SurfaceIO.c:2331:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2331 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2339:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2339 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2341:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2341 |         fgets(line, 256, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2343:9: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2343 |         fgets(line, 256, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2345:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
 2345 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'read_annotation_table':
Lib/CAT_SurfaceIO.c:2681:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2681 |         fread(&annot_name, sizeof(char), len, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2685:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2685 |             fread(&atable[i].name, sizeof(char), len, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2704:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2704 |         fread(&annot_name, sizeof(char), len, fp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2711:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
 2711 |             fread(&atable[i].name, sizeof(char), len, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c: At top level:
Lib/CAT_SurfaceIO.c:19:20: warning: 'basename' defined but not used [-Wunused-function]
   19 | static const char *basename(const char *path)
      |                    ^~~~~~~~
Lib/CAT_SurfaceIO.c: In function 'output_values_any_format':
Lib/CAT_SurfaceIO.c:2517:17: warning: 'd' may be used uninitialized [-Wmaybe-uninitialized]
 2517 |                 fprintf(fp, "%f\n", d[i]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2492:13: note: 'd' was declared here
 2492 |     double *d;
      |             ^
Lib/CAT_SurfaceIO.c:2519:17: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized]
 2519 |                 fprintf(fp, "%d\n", r[i]);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_SurfaceIO.c:2493:13: note: 'r' was declared here
 2493 |     int i, *r;
      |             ^
Lib/CAT_SurfaceIO.c:2532:12: warning: 'status' may be used uninitialized [-Wmaybe-uninitialized]
 2532 |     return (status);
      |            ^
Lib/CAT_SurfaceIO.c:2490:12: note: 'status' was declared here
 2490 |     Status status;
      |            ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Topology.lo Lib/CAT_Topology.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Topology.c -o Lib/CAT_Topology.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_Topology.c: In function 'sph_postcorrect':
Lib/CAT_Topology.c:234:20: warning: unused variable 'poly' [-Wunused-variable]
  234 |     int p, d, val, poly, *flag, smooth_iters;
      |                    ^~~~
Lib/CAT_Topology.c:231:20: warning: unused variable 'surface_object' [-Wunused-variable]
  231 |     object_struct *surface_object;
      |                    ^~~~~~~~~~~~~~
Lib/CAT_Topology.c: In function 'fix_topology_sph':
Lib/CAT_Topology.c:381:27: warning: unused variable 'sum_HD_hole' [-Wunused-variable]
  381 |     double sum_HD_handle, sum_HD_hole;
      |                           ^~~~~~~~~~~
Lib/CAT_Topology.c:381:12: warning: unused variable 'sum_HD_handle' [-Wunused-variable]
  381 |     double sum_HD_handle, sum_HD_hole;
      |            ^~~~~~~~~~~~~
Lib/CAT_Topology.c:377:20: warning: unused variable 'd' [-Wunused-variable]
  377 |     int bw2, i, p, d, n_done;
      |                    ^
Lib/CAT_Topology.c:371:69: warning: unused variable 'surface_object' [-Wunused-variable]
  371 |     object_struct **hbw_objects, **lbw_objects, **reparam_objects, *surface_object;
      |                                                                     ^~~~~~~~~~~~~~
Lib/CAT_Topology.c: In function 'sph_postcorrect':
Lib/CAT_Topology.c:271:30: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
  271 |                 hbw_holes[p] = val;
      |                 ~~~~~~~~~~~~~^~~~~
Lib/CAT_Topology.c:234:15: note: 'val' was declared here
  234 |     int p, d, val, poly, *flag, smooth_iters;
      |               ^~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Patch.lo Lib/CAT_Patch.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Patch.c -o Lib/CAT_Patch.o
Lib/CAT_Patch.c: In function 'extract_patch_around_polygon':
Lib/CAT_Patch.c:279:22: warning: unused variable 'patch' [-Wunused-variable]
  279 |     polygons_struct *patch;
      |                      ^~~~~
Lib/CAT_Patch.c: In function 'extract_patch_around_point':
Lib/CAT_Patch.c:322:22: warning: unused variable 'patch' [-Wunused-variable]
  322 |     polygons_struct *patch;
      |                      ^~~~~
Lib/CAT_Patch.c:320:21: warning: unused variable 'ptmap' [-Wunused-variable]
  320 |     int *polyflag, *ptmap;
      |                     ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Refine.lo Lib/CAT_Refine.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Refine.c -o Lib/CAT_Refine.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
In file included from Lib/CAT_Refine.c:10:
Lib/CAT_Refine.c: In function 'add_polygons':
./3rdparty/bicpl-surface/Include/bicpl.h:42:62: warning: 'n_new_triangles' may be used uninitialized [-Wmaybe-uninitialized]
   42 | #define  for_less( i, start, end )  for( (i) = (start);  (i) < (end);  ++(i) )
      |                                                          ~~~~^~~~~~~
Lib/CAT_Refine.c:141:9: note: 'n_new_triangles' was declared here
  141 |     int n_new_triangles, new_indices[4][3], offset;
      |         ^~~~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Interpolate.lo Lib/CAT_Interpolate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Interpolate.c -o Lib/CAT_Interpolate.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Defect.lo Lib/CAT_Defect.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Defect.c -o Lib/CAT_Defect.o
Lib/CAT_Defect.c: In function 'defect_euler':
Lib/CAT_Defect.c:72:34: warning: variable 'n_dup_e' set but not used [-Wunused-but-set-variable=]
   72 |     int p, n, nn, n_v, n_e, n_f, n_dup_e;
      |                                  ^~~~~~~
Lib/CAT_Defect.c: In function 'find_topological_defects':
Lib/CAT_Defect.c:178:22: warning: unused variable 'ltree' [-Wunused-variable]
  178 |     struct looptree *ltree;
      |                      ^~~~~
Lib/CAT_Defect.c:176:18: warning: unused variable 'n' [-Wunused-variable]
  176 |     int size, i, n, p;
      |                  ^
Lib/CAT_Defect.c:176:15: warning: unused variable 'i' [-Wunused-variable]
  176 |     int size, i, n, p;
      |               ^
Lib/CAT_Defect.c:176:9: warning: unused variable 'size' [-Wunused-variable]
  176 |     int size, i, n, p;
      |         ^~~~
Lib/CAT_Defect.c:175:31: warning: unused variable 'n_euler' [-Wunused-variable]
  175 |     int d, pts[3], n_defects, n_euler, n_intersects;
      |                               ^~~~~~~
Lib/CAT_Defect.c:175:20: warning: unused variable 'n_defects' [-Wunused-variable]
  175 |     int d, pts[3], n_defects, n_euler, n_intersects;
      |                    ^~~~~~~~~
Lib/CAT_Defect.c:175:12: warning: unused variable 'pts' [-Wunused-variable]
  175 |     int d, pts[3], n_defects, n_euler, n_intersects;
      |            ^~~
Lib/CAT_Defect.c: In function 'update_polydefects':
Lib/CAT_Defect.c:330:12: warning: unused variable 'd' [-Wunused-variable]
  330 |     int p, d;
      |            ^
Lib/CAT_Defect.c: In function 'get_defect_size':
Lib/CAT_Defect.c:421:9: warning: unused variable 'i' [-Wunused-variable]
  421 |     int i, p, d;
      |         ^
Lib/CAT_Defect.c: In function 'bisect_defects':
Lib/CAT_Defect.c:470:12: warning: unused variable 'dir' [-Wunused-variable]
  470 |     Vector dir;
      |            ^~~
Lib/CAT_Defect.c:468:15: warning: unused variable 'maxpts' [-Wunused-variable]
  468 |     int npts, maxpts, *pts, *polydefects;
      |               ^~~~~~
Lib/CAT_Defect.c:467:15: warning: unused variable 'i' [-Wunused-variable]
  467 |     int p, d, i, fillflag, euler;
      |               ^
Lib/CAT_Defect.c: In function 'find_artifacts':
Lib/CAT_Defect.c:701:24: warning: variable 'poly' set but not used [-Wunused-but-set-variable=]
  701 |     int size, i, n, p, poly, done;
      |                        ^~~~
Lib/CAT_Defect.c:700:9: warning: unused variable 'd' [-Wunused-variable]
  700 |     int d, euler, aval, aval2;
      |         ^
Lib/CAT_Defect.c: In function 'bisect_defects':
Lib/CAT_Defect.c:544:21: warning: 'polydefects' may be used uninitialized [-Wmaybe-uninitialized]
  544 |             euler = defect_euler(surface, defects, polydefects, d,
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  545 |                                  n_neighbours, neighbours);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Defect.c:468:30: note: 'polydefects' was declared here
  468 |     int npts, maxpts, *pts, *polydefects;
      |                              ^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Complexity.lo Lib/CAT_Complexity.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Complexity.c -o Lib/CAT_Complexity.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_Complexity.c: In function 'get_localfd':
Lib/CAT_Complexity.c:107:22: warning: unused variable 'vertidx' [-Wunused-variable]
  107 |     int ptidx, poly, vertidx, size;
      |                      ^~~~~~~
Lib/CAT_Complexity.c:106:11: warning: unused variable 'points' [-Wunused-variable]
  106 |     Point points[MAX_POINTS_PER_POLYGON];
      |           ^~~~~~
Lib/CAT_Complexity.c:105:32: warning: unused variable 'area' [-Wunused-variable]
  105 |     double *polyfd, poly_size, area;
      |                                ^~~~
Lib/CAT_Complexity.c:105:21: warning: unused variable 'poly_size' [-Wunused-variable]
  105 |     double *polyfd, poly_size, area;
      |                     ^~~~~~~~~
Lib/CAT_Complexity.c: In function 'fractal_dimension':
Lib/CAT_Complexity.c:231:11: warning: unused variable 'centre' [-Wunused-variable]
  231 |     Point centre;
      |           ^~~~~~
Lib/CAT_Complexity.c:229:18: warning: unused variable 'n' [-Wunused-variable]
  229 |     int i, iter, n, n_triangles;
      |                  ^
Lib/CAT_Complexity.c: In function 'get_smoothed_values':
Lib/CAT_Complexity.c:348:11: warning: unused variable 'point' [-Wunused-variable]
  348 |     Point point;
      |           ^~~~~
Lib/CAT_Complexity.c:346:13: warning: unused variable 'sm_values' [-Wunused-variable]
  346 |     double *sm_values;
      |             ^~~~~~~~~
Lib/CAT_Complexity.c:345:15: warning: unused variable 'n_iter' [-Wunused-variable]
  345 |     int i, j, n_iter;
      |               ^~~~~~
Lib/CAT_Complexity.c:345:12: warning: unused variable 'j' [-Wunused-variable]
  345 |     int i, j, n_iter;
      |            ^
Lib/CAT_Complexity.c:345:9: warning: unused variable 'i' [-Wunused-variable]
  345 |     int i, j, n_iter;
      |         ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Gyrification.lo Lib/CAT_Gyrification.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Gyrification.c -o Lib/CAT_Gyrification.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_Gyrification.c: In function 'gyrification_index_sph':
Lib/CAT_Gyrification.c:46:55: warning: unused variable 'local_gi' [-Wunused-variable]
   46 |     double *convex_areas, *areas, convex_area, area, *local_gi;
      |                                                       ^~~~~~~~
Lib/CAT_Gyrification.c:45:40: warning: unused variable 'spectral_power' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |                                        ^~~~~~~~~~~~~~
Lib/CAT_Gyrification.c:45:31: warning: unused variable 'rdataz' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |                               ^~~~~~
Lib/CAT_Gyrification.c:45:22: warning: unused variable 'rdatay' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |                      ^~~~~~
Lib/CAT_Gyrification.c:45:13: warning: unused variable 'rdatax' [-Wunused-variable]
   45 |     double *rdatax, *rdatay, *rdataz, *spectral_power;
      |             ^~~~~~
Lib/CAT_Gyrification.c:44:48: warning: unused variable 'licz' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                                                ^~~~
Lib/CAT_Gyrification.c:44:41: warning: unused variable 'lrcz' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                                         ^~~~
Lib/CAT_Gyrification.c:44:34: warning: unused variable 'licy' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                                  ^~~~
Lib/CAT_Gyrification.c:44:27: warning: unused variable 'lrcy' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                           ^~~~
Lib/CAT_Gyrification.c:44:20: warning: unused variable 'licx' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |                    ^~~~
Lib/CAT_Gyrification.c:44:13: warning: unused variable 'lrcx' [-Wunused-variable]
   44 |     double *lrcx, *licx, *lrcy, *licy, *lrcz, *licz;
      |             ^~~~
Lib/CAT_Gyrification.c:43:43: warning: unused variable 'icz' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                                           ^~~
Lib/CAT_Gyrification.c:43:37: warning: unused variable 'rcz' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                                     ^~~
Lib/CAT_Gyrification.c:43:31: warning: unused variable 'icy' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                               ^~~
Lib/CAT_Gyrification.c:43:25: warning: unused variable 'rcy' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                         ^~~
Lib/CAT_Gyrification.c:43:19: warning: unused variable 'icx' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |                   ^~~
Lib/CAT_Gyrification.c:43:13: warning: unused variable 'rcx' [-Wunused-variable]
   43 |     double *rcx, *icx, *rcy, *icy, *rcz, *icz;
      |             ^~~
Lib/CAT_Gyrification.c:42:12: warning: variable 'n_points' set but not used [-Wunused-but-set-variable=]
   42 |     int i, n_points;
      |            ^~~~~~~~
Lib/CAT_Gyrification.c:40:77: warning: unused variable 'surface_resampled' [-Wunused-variable]
   40 |     polygons_struct *polygons, *convex, *convex_sphere, *convex_resampled, *surface_resampled;
      |                                                                             ^~~~~~~~~~~~~~~~~
Lib/CAT_Gyrification.c:40:58: warning: unused variable 'convex_resampled' [-Wunused-variable]
   40 |     polygons_struct *polygons, *convex, *convex_sphere, *convex_resampled, *surface_resampled;
      |                                                          ^~~~~~~~~~~~~~~~
Lib/CAT_Gyrification.c:40:22: warning: unused variable 'polygons' [-Wunused-variable]
   40 |     polygons_struct *polygons, *convex, *convex_sphere, *convex_resampled, *surface_resampled;
      |                      ^~~~~~~~
In file included from Lib/CAT_Gyrification.c:18:
./Include/CAT_ConvexHull.h: At top level:
./Include/CAT_ConvexHull.h:40:15: warning: 'get_points_of_region' declared 'static' but never defined [-Wunused-function]
   40 | private  int  get_points_of_region(polygons_struct  *, Point ** );
      |               ^~~~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:41:16: warning: 'get_convex_hull' declared 'static' but never defined [-Wunused-function]
   41 | private  void  get_convex_hull(int, Point *, polygons_struct * );
      |                ^~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:42:15: warning: 'get_convex_hull_2d' declared 'static' but never defined [-Wunused-function]
   42 | private  int  get_convex_hull_2d(int, float *, float *, int *, int, int );
      |               ^~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:43:13: warning: 'get_surface_point_normals' declared 'static' but never defined [-Wunused-function]
   43 | private int get_surface_point_normals( polygons_struct *, int *, Point *[],
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:45:13: warning: 'get_surface_neighbours' declared 'static' but never defined [-Wunused-function]
   45 | private int get_surface_neighbours( polygons_struct *, int *[],
      |             ^~~~~~~~~~~~~~~~~~~~~~
./Include/CAT_ConvexHull.h:28:12: warning: 'KeyFactor' defined but not used [-Wunused-variable]
   28 | static int KeyFactor = 100000;
      |            ^~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Separate.lo Lib/CAT_Separate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Separate.c -o Lib/CAT_Separate.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Isometrics.lo Lib/CAT_Isometrics.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Isometrics.c -o Lib/CAT_Isometrics.o
Lib/CAT_Isometrics.c: In function 'smooth':
Lib/CAT_Isometrics.c:150:9: warning: unused variable 'n1' [-Wunused-variable]
  150 |     int n1, n2, count, stepsize;
      |         ^~
Lib/CAT_Isometrics.c: In function 'distortcorrect':
Lib/CAT_Isometrics.c:351:21: warning: unused variable 'progress' [-Wunused-variable]
  351 |     progress_struct progress;
      |                     ^~~~~~~~
Lib/CAT_Isometrics.c:350:9: warning: unused variable 'n1' [-Wunused-variable]
  350 |     int n1, n2, count, stepsize;
      |         ^~
Lib/CAT_Isometrics.c: In function 'stretch':
Lib/CAT_Isometrics.c:536:9: warning: unused variable 'i' [-Wunused-variable]
  536 |     int i, n, it, p;
      |         ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_DepthPotential.lo Lib/CAT_DepthPotential.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_DepthPotential.c -o Lib/CAT_DepthPotential.o
Lib/CAT_DepthPotential.c: In function 'compute_depth_potential':
Lib/CAT_DepthPotential.c:72:21: warning: unused variable 'i' [-Wunused-variable]
   72 |     int lambda = 2, i;
      |                     ^
Lib/CAT_DepthPotential.c:64:12: warning: unused variable 'coords' [-Wunused-variable]
   64 |     Point *coords = NULL;     // coordinates
      |            ^~~~~~
Lib/CAT_DepthPotential.c: In function 'stable_normals':
Lib/CAT_DepthPotential.c:680:24: warning: unused variable 'mag3' [-Wunused-variable]
  680 |     double mag1, mag2, mag3, mag3x1, mag1x2, mag2x3, w1, w2, w3;
      |                        ^~~~
Lib/CAT_DepthPotential.c:680:18: warning: unused variable 'mag2' [-Wunused-variable]
  680 |     double mag1, mag2, mag3, mag3x1, mag1x2, mag2x3, w1, w2, w3;
      |                  ^~~~
Lib/CAT_DepthPotential.c:680:12: warning: unused variable 'mag1' [-Wunused-variable]
  680 |     double mag1, mag2, mag3, mag3x1, mag1x2, mag2x3, w1, w2, w3;
      |            ^~~~
Lib/CAT_DepthPotential.c: At top level:
Lib/CAT_DepthPotential.c:586:1: warning: 'free_csr_matrix' defined but not used [-Wunused-function]
  586 | free_csr_matrix(struct csr_matrix *mat)
      | ^~~~~~~~~~~~~~~
In function 'gauss_seidel',
    inlined from 'local_depth_potential' at Lib/CAT_DepthPotential.c:436:5:
Lib/CAT_DepthPotential.c:500:17: warning: 'diag' may be used uninitialized [-Wmaybe-uninitialized]
  500 |             val /= diag;
      |             ~~~~^~~~~~~
Lib/CAT_DepthPotential.c: In function 'local_depth_potential':
Lib/CAT_DepthPotential.c:476:28: note: 'diag' was declared here
  476 |     double res, res0, val, diag;
      |                            ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_ConvexHull.lo Lib/CAT_ConvexHull.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_ConvexHull.c -o Lib/CAT_ConvexHull.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_ConvexHull.c: In function 'get_surface_neighbours':
Lib/CAT_ConvexHull.c:1065:5: warning: multi-line comment [-Wcomment]
 1065 |     //      /\   /\
      |     ^
In file included from ./3rdparty/volume_io/Include/volume_io.h:46,
                 from ./3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ./3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from Lib/CAT_ConvexHull.c:12:
Lib/CAT_ConvexHull.c: In function 'get_plane_polygon_vertices':
./3rdparty/volume_io/Include/volume_io/geom_structs.h:70:53: warning: 'horizontal' may be used uninitialized [-Wmaybe-uninitialized]
   70 | #define  Point_coord( point, coord ) ((point).coords[coord])
Lib/CAT_ConvexHull.c:481:38: note: 'horizontal' declared here
  481 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                      ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'horizontal' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
Lib/CAT_ConvexHull.c:481:38: note: 'horizontal' declared here
  481 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                      ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geom_structs.h:107:56: warning: 'horizontal' may be used uninitialized [-Wmaybe-uninitialized]
  107 | #define  Vector_coord( vector, coord ) ((vector).coords[coord])
Lib/CAT_ConvexHull.c:481:38: note: 'horizontal' declared here
  481 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                      ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'vertical.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:481:50: note: 'vertical.coords[0]' was declared here
  481 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                                  ^~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'vertical.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:481:50: note: 'vertical.coords[1]' was declared here
  481 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                                  ^~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'vertical.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:481:50: note: 'vertical.coords[2]' was declared here
  481 |     Vector v01, v02, normal, offset, horizontal, vertical;
      |                                                  ^~~~~~~~
Lib/CAT_ConvexHull.c: In function 'find_limit_plane.isra.0':
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'horizontal.coords[0]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:217:12: note: 'horizontal.coords[0]' was declared here
  217 |     Vector horizontal, vertical, offset;
      |            ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'horizontal.coords[1]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:217:12: note: 'horizontal.coords[1]' was declared here
  217 |     Vector horizontal, vertical, offset;
      |            ^~~~~~~~~~
./3rdparty/volume_io/Include/volume_io/geometry.h:37:24: warning: 'horizontal.coords[2]' may be used uninitialized [-Wmaybe-uninitialized]
   37 | #define  Real_cast(x) ((VIO_Real) (x))
      |                       ~^~~~~~~~~~~~~~~
Lib/CAT_ConvexHull.c:217:12: note: 'horizontal.coords[2]' was declared here
  217 |     Vector horizontal, vertical, offset;
      |            ^~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_LayerSmooth.lo Lib/CAT_LayerSmooth.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_LayerSmooth.c -o Lib/CAT_LayerSmooth.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Kmeans.lo Lib/CAT_Kmeans.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Kmeans.c -o Lib/CAT_Kmeans.o
Lib/CAT_Kmeans.c: In function 'Kmeans':
Lib/CAT_Kmeans.c:217:31: warning: unused variable 'sum' [-Wunused-variable]
  217 |     double e, emin, eps, val, sum;
      |                               ^~~
Lib/CAT_Kmeans.c:216:12: warning: unused variable 'j' [-Wunused-variable]
  216 |     int i, j, k;
      |            ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_NiftiLib.lo Lib/CAT_NiftiLib.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_NiftiLib.c -o Lib/CAT_NiftiLib.o
Lib/CAT_NiftiLib.c: In function 'write_nifti_double':
Lib/CAT_NiftiLib.c:289:45: warning: 'img_range[1]' may be used uninitialized [-Wmaybe-uninitialized]
  289 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) /
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:176:12: note: 'img_range[1]' was declared here
  176 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c:289:45: warning: 'img_range[0]' may be used uninitialized [-Wmaybe-uninitialized]
  289 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) /
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:176:12: note: 'img_range[0]' was declared here
  176 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c: In function 'write_nifti_float':
Lib/CAT_NiftiLib.c:617:45: warning: 'img_range[1]' may be used uninitialized [-Wmaybe-uninitialized]
  617 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) / (dt_range[1] - dt_range[0]));
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:504:12: note: 'img_range[1]' was declared here
  504 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
Lib/CAT_NiftiLib.c:617:45: warning: 'img_range[0]' may be used uninitialized [-Wmaybe-uninitialized]
  617 |         nii_ptr->scl_slope = ((img_range[1] - img_range[0]) / (dt_range[1] - dt_range[0]));
      |                               ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
Lib/CAT_NiftiLib.c:504:12: note: 'img_range[0]' was declared here
  504 |     double img_range[2], dt_range[2], val;
      |            ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Bmap.lo Lib/CAT_Bmap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Bmap.c -o Lib/CAT_Bmap.o
Lib/CAT_Bmap.c: In function 'ComputeInitialPveLabel':
Lib/CAT_Bmap.c:120:29: warning: unused variable 'ind2' [-Wunused-variable]
  120 |     int i, ix, iy, iz, ind, ind2;
      |                             ^~~~
Lib/CAT_Bmap.c:120:24: warning: unused variable 'ind' [-Wunused-variable]
  120 |     int i, ix, iy, iz, ind, ind2;
      |                        ^~~
Lib/CAT_Bmap.c:120:20: warning: unused variable 'iz' [-Wunused-variable]
  120 |     int i, ix, iy, iz, ind, ind2;
      |                    ^~
Lib/CAT_Bmap.c:120:16: warning: unused variable 'iy' [-Wunused-variable]
  120 |     int i, ix, iy, iz, ind, ind2;
      |                ^~
Lib/CAT_Bmap.c:120:12: warning: unused variable 'ix' [-Wunused-variable]
  120 |     int i, ix, iy, iz, ind, ind2;
      |            ^~
Lib/CAT_Bmap.c: In function 'movingAverage':
Lib/CAT_Bmap.c:374:12: warning: unused variable 'fwhm' [-Wunused-variable]
  374 |     double fwhm[3] = {50.0, 50.0, 50.0};
      |            ^~~~
Lib/CAT_Bmap.c:373:12: warning: unused variable 'voxel_size' [-Wunused-variable]
  373 |     double voxel_size[3] = {1.0, 1.0, 1.0};
      |            ^~~~~~~~~~
Lib/CAT_Bmap.c:347:30: warning: unused variable 'h' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |                              ^
Lib/CAT_Bmap.c:347:27: warning: unused variable 'l' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |                           ^
Lib/CAT_Bmap.c:347:24: warning: unused variable 'r' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |                        ^
Lib/CAT_Bmap.c:347:21: warning: unused variable 'z' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |                     ^
Lib/CAT_Bmap.c:347:18: warning: unused variable 'y' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |                  ^
Lib/CAT_Bmap.c:347:15: warning: unused variable 'x' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |               ^
Lib/CAT_Bmap.c:347:12: warning: unused variable 'j' [-Wunused-variable]
  347 |     int i, j, x, y, z, r, l, h;
      |            ^
Lib/CAT_Bmap.c: In function 'Bmap':
Lib/CAT_Bmap.c:411:23: warning: unused variable 'val' [-Wunused-variable]
  411 |     double thresh[2], val, d;
      |                       ^~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Amap.lo Lib/CAT_Amap.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Amap.c -o Lib/CAT_Amap.o
Lib/CAT_Amap.c: In function 'Pve5':
Lib/CAT_Amap.c:363:15: warning: unused variable 'mx' [-Wunused-variable]
  363 |     double w, mx;
      |               ^~
Lib/CAT_Amap.c:362:12: warning: unused variable 'mxi' [-Wunused-variable]
  362 |     int i, mxi;
      |            ^~~
Lib/CAT_Amap.c: In function 'MrfPrior':
Lib/CAT_Amap.c:463:15: warning: unused variable 'k' [-Wunused-variable]
  463 |     int i, j, k, x, y, z;
      |               ^
Lib/CAT_Amap.c: In function 'EstimateSegmentation':
Lib/CAT_Amap.c:990:69: warning: unused variable 'replace' [-Wunused-variable]
  990 |     int ix, iy, iz, ix_large, iy_large, iz_large, ind2, ind2_large, replace = 1;
      |                                                                     ^~~~~~~
Lib/CAT_Amap.c:987:53: warning: variable 'voxelsize_squared' set but not used [-Wunused-but-set-variable=]
  987 |     double pvalue[MAX_NC], mrf_probability[MAX_NC], voxelsize_squared[3], psum;
      |                                                     ^~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:987:28: warning: unused variable 'mrf_probability' [-Wunused-variable]
  987 |     double pvalue[MAX_NC], mrf_probability[MAX_NC], voxelsize_squared[3], psum;
      |                            ^~~~~~~~~~~~~~~
Lib/CAT_Amap.c:986:74: warning: unused variable 'exponent' [-Wunused-variable]
  986 |     double d[MAX_NC], alpha[MAX_NC], log_alpha[MAX_NC], log_var[MAX_NC], exponent[MAX_NC];
      |                                                                          ^~~~~~~~
Lib/CAT_Amap.c: In function 'Pve5':
Lib/CAT_Amap.c:420:17: warning: 'new_val[0]' may be used uninitialized [-Wmaybe-uninitialized]
  420 |         prob[i] = new_val[CSFLABEL - 1];
      |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:364:19: note: 'new_val[0]' was declared here
  364 |     unsigned char new_val[MAX_NC];
      |                   ^~~~~~~
Lib/CAT_Amap.c:421:23: warning: 'new_val[2]' may be used uninitialized [-Wmaybe-uninitialized]
  421 |         prob[vol + i] = new_val[GMLABEL - 1];
      |         ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:364:19: note: 'new_val[2]' was declared here
  364 |     unsigned char new_val[MAX_NC];
      |                   ^~~~~~~
Lib/CAT_Amap.c:422:29: warning: 'new_val[4]' may be used uninitialized [-Wmaybe-uninitialized]
  422 |         prob[(2 * vol) + i] = new_val[WMLABEL - 1];
      |         ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Amap.c:364:19: note: 'new_val[4]' was declared here
  364 |     unsigned char new_val[MAX_NC];
      |                   ^~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Ornlm.lo Lib/CAT_Ornlm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Ornlm.c -o Lib/CAT_Ornlm.o
Lib/CAT_Ornlm.c: In function 'ornlm':
Lib/CAT_Ornlm.c:440:17: warning: unused variable 'epsilon' [-Wunused-variable]
  440 |     const float epsilon = 0.00001f;
      |                 ^~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Sanlm.lo Lib/CAT_Sanlm.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Sanlm.c -o Lib/CAT_Sanlm.o
Lib/CAT_Sanlm.c: In function 'sanlm':
Lib/CAT_Sanlm.c:764:28: warning: variable 'Ndims' set but not used [-Wunused-but-set-variable=]
  764 |     int vol, slice, label, Ndims, i, j, k, ii, jj, kk, ni, nj, nk, indice, Nthreads, ini, fin, r;
      |                            ^~~~~
Lib/CAT_Sanlm.c:930:28: warning: 'bias' may be used uninitialized [-Wmaybe-uninitialized]
  930 |         ThreadArgs[i].bias = bias;
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~
Lib/CAT_Sanlm.c:760:43: note: 'bias' was declared here
  760 |     float *means, *variances, *Estimate, *bias;
      |                                           ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SafeAlloc.lo Lib/CAT_SafeAlloc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SafeAlloc.c -o Lib/CAT_SafeAlloc.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Deform.lo Lib/CAT_Deform.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Deform.c -o Lib/CAT_Deform.o
Lib/CAT_Deform.c: In function 'surf_deform':
Lib/CAT_Deform.c:270:11: warning: unused variable 'points' [-Wunused-variable]
  270 |     Point points[MAX_POINTS_PER_POLYGON];
      |           ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_SPH.lo Lib/CAT_SPH.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_SPH.c -o Lib/CAT_SPH.o
Lib/CAT_SPH.c: In function 'read_SPHxyz':
Lib/CAT_SPH.c:40:22: warning: unused variable 'i' [-Wunused-variable]
   40 |     int bw2, n_dims, i;
      |                      ^
Lib/CAT_SPH.c: In function 'get_sph_coeffs_of_realdata':
Lib/CAT_SPH.c:454:29: warning: unused variable 'n_objects' [-Wunused-variable]
  454 |     int rank, howmany_rank, n_objects, bandwidth2;
      |                             ^~~~~~~~~
Lib/CAT_SPH.c: In function 'get_realdata_from_sph_coeffs':
Lib/CAT_SPH.c:528:29: warning: unused variable 'n_objects' [-Wunused-variable]
  528 |     int rank, howmany_rank, n_objects, bandwidth2;
      |                             ^~~~~~~~~
Lib/CAT_SPH.c: In function 'get_equally_sampled_coords_of_polygon':
Lib/CAT_SPH.c:602:21: warning: unused variable 'ind' [-Wunused-variable]
  602 |     int poly, size, ind, bandwidth2;
      |                     ^~~
Lib/CAT_SPH.c:599:28: warning: unused variable 'radius' [-Wunused-variable]
  599 |     double value, u, v, r, radius;
      |                            ^~~~~~
Lib/CAT_SPH.c:599:25: warning: unused variable 'r' [-Wunused-variable]
  599 |     double value, u, v, r, radius;
      |                         ^
Lib/CAT_SPH.c:599:12: warning: unused variable 'value' [-Wunused-variable]
  599 |     double value, u, v, r, radius;
      |            ^~~~~
Lib/CAT_SPH.c:598:12: warning: unused variable 'j' [-Wunused-variable]
  598 |     int i, j, x, y;
      |            ^
Lib/CAT_SPH.c: In function 'get_equally_sampled_coords_holes':
Lib/CAT_SPH.c:694:21: warning: unused variable 'ind' [-Wunused-variable]
  694 |     int poly, size, ind, bandwidth2;
      |                     ^~~
Lib/CAT_SPH.c:691:28: warning: unused variable 'radius' [-Wunused-variable]
  691 |     double value, u, v, r, radius;
      |                            ^~~~~~
Lib/CAT_SPH.c:691:12: warning: unused variable 'value' [-Wunused-variable]
  691 |     double value, u, v, r, radius;
      |            ^~~~~
Lib/CAT_SPH.c:690:12: warning: unused variable 'j' [-Wunused-variable]
  690 |     int i, j, x, y, *bisected;
      |            ^
Lib/CAT_SPH.c: In function 'create_equally_sampled_unit_sphere':
Lib/CAT_SPH.c:792:21: warning: unused variable 'y' [-Wunused-variable]
  792 |     double u, v, x, y;
      |                     ^
Lib/CAT_SPH.c:792:18: warning: unused variable 'x' [-Wunused-variable]
  792 |     double u, v, x, y;
      |                  ^
Lib/CAT_SPH.c:790:11: warning: unused variable 'unit_point' [-Wunused-variable]
  790 |     Point unit_point;
      |           ^~~~~~~~~~
Lib/CAT_SPH.c: In function 'read_SPHxyz':
Lib/CAT_SPH.c:46:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
   46 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
Lib/CAT_SPH.c:52:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
   52 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_Vol.lo Lib/CAT_Vol.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_Vol.c -o Lib/CAT_Vol.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_Vol.c:104:38: warning: argument 4 of type 'int[3]' with mismatched bound [-Warray-parameter=]
  104 | int sub2ind(int x, int y, int z, int s[3])
      |                                  ~~~~^~~~
In file included from Lib/CAT_Vol.c:9:
./Include/CAT_Vol.h:333:38: note: previously declared as 'int[]'
  333 | int sub2ind(int x, int y, int z, int s[]);
      |                                  ~~~~^~~
Lib/CAT_Vol.c:427:57: warning: argument 5 of type 'int[3]' with mismatched bound [-Warray-parameter=]
  427 | float isoval(float *vol, float x, float y, float z, int dims[3], nifti_image *nii_ptr)
      |                                                     ~~~~^~~~~~~
./Include/CAT_Vol.h:168:58: note: previously declared as 'int[]'
  168 | float isoval(float vol[], float x, float y, float z, int s[], nifti_image *nii_ptr);
      |                                                      ~~~~^~~
Lib/CAT_Vol.c: In function 'dist_close_float':
Lib/CAT_Vol.c:2238:21: warning: unused variable 'j' [-Wunused-variable]
 2238 |     int i, x, y, z, j, band, dims2[3];
      |                     ^
Lib/CAT_Vol.c: In function 'dist_open_float':
Lib/CAT_Vol.c:2354:12: warning: unused variable 'j' [-Wunused-variable]
 2354 |     int i, j;
      |            ^
Lib/CAT_Vol.c: In function 'smooth_subsample_float':
Lib/CAT_Vol.c:3159:23: warning: variable 'nvox' set but not used [-Wunused-but-set-variable=]
 3159 |     int i, nvox_samp, nvox;
      |                       ^~~~
Lib/CAT_Vol.c: In function 'localstat_subsample3':
Lib/CAT_Vol.c:3284:9: warning: unused variable 'i' [-Wunused-variable]
 3284 |     int i, nvox_samp, nvox;
      |         ^
Lib/CAT_Vol.c: In function 'correct_bias_label':
Lib/CAT_Vol.c:3347:12: warning: unused variable 'j' [-Wunused-variable]
 3347 |     int i, j, nvox, nvoxr, n[MAX_NC], n_classes = 0;
      |            ^
Lib/CAT_Vol.c: In function 'correct_bias':
Lib/CAT_Vol.c:3493:42: warning: unused variable 'scl' [-Wunused-variable]
 3493 |     float max_dist = -FLT_MAX, mx_image, scl;
      |                                          ^~~
Lib/CAT_Vol.c:3493:32: warning: unused variable 'mx_image' [-Wunused-variable]
 3493 |     float max_dist = -FLT_MAX, mx_image, scl;
      |                                ^~~~~~~~
Lib/CAT_Vol.c:3491:20: warning: unused variable 'mask' [-Wunused-variable]
 3491 |     unsigned char *mask;
      |                    ^~~~
Lib/CAT_Vol.c: In function 'keep_largest_cluster_float':
Lib/CAT_Vol.c:3848:11: warning: unused variable 'valToAdd' [-Wunused-variable]
 3848 |     float valToAdd;
      |           ^~~~~~~~
Lib/CAT_Vol.c: In function 'fill_holes':
Lib/CAT_Vol.c:4034:12: warning: unused variable 'voxelsize' [-Wunused-variable]
 4034 |     double voxelsize[3] = {1.0, 1.0, 1.0};
      |            ^~~~~~~~~
Lib/CAT_Vol.c: In function 'smooth_float':
Lib/CAT_Vol.c:1240:12: warning: 'sum_mask' may be used uninitialized [-Wmaybe-uninitialized]
 1240 |         if (sum_mask > 0)
      |            ^
Lib/CAT_Vol.c:1155:23: note: 'sum_mask' was declared here
 1155 |     int xyz[3], nvox, sum_mask;
      |                       ^~~~~~~~
Lib/CAT_Vol.c:1242:13: warning: 'mask' may be used uninitialized [-Wmaybe-uninitialized]
 1242 |             convxyz_float(mask, x, y, z, ((2 * xyz[0]) + 1), ((2 * xyz[1]) + 1), ((2 * xyz[2]) + 1), -xyz[0], -xyz[1], -xyz[2], mask, dims);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Vol.c:1156:12: note: 'mask' was declared here
 1156 |     float *mask;
      |            ^~~~
Lib/CAT_Vol.c:1245:31: warning: 'mask2' may be used uninitialized [-Wmaybe-uninitialized]
 1245 |                 vol[i] = mask2[i] > 0 ? vol[i] / mask[i] : 0.0;
      |                          ~~~~~^~~
Lib/CAT_Vol.c:1157:20: note: 'mask2' was declared here
 1157 |     unsigned char *mask2;
      |                    ^~~~~
Lib/CAT_Vol.c: In function 'downcut3':
Lib/CAT_Vol.c:1841:5: warning: 'intensity_f_69' may be used uninitialized [-Wmaybe-uninitialized]
 1841 |     downcut_float(labels_f, intensity_f, dist_f, dims, limit, voxelsize, dd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Vol.c:1579:6: note: by argument 2 of type 'const float *' to 'downcut_float' declared here
 1579 | void downcut_float(float *labels, const float *intensity, float *dist,
      |      ^~~~~~~~~~~~~
Lib/CAT_Vol.c:1841:5: warning: 'intensity_f_69' may be used uninitialized [-Wmaybe-uninitialized]
 1841 |     downcut_float(labels_f, intensity_f, dist_f, dims, limit, voxelsize, dd);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Lib/CAT_Vol.c:1579:6: note: by argument 2 of type 'const float *' to 'downcut_float' declared here
 1579 | void downcut_float(float *labels, const float *intensity, float *dist,
      |      ^~~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_BBReg.lo Lib/CAT_BBReg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_BBReg.c -o Lib/CAT_BBReg.o
Lib/CAT_BBReg.c: In function 'CAT_BBReg_optimise':
Lib/CAT_BBReg.c:897:12: warning: unused variable 'step_rad' [-Wunused-variable]
  897 |     double step_rad = (grid_steps > 0) ? grid_range_rad / grid_steps : 0.0;
      |            ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.  -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o Lib/CAT_VolumeReg.lo Lib/CAT_VolumeReg.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c Lib/CAT_VolumeReg.c -o Lib/CAT_VolumeReg.o
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Lib/CAT_VolumeReg.c:52:13: warning: 'invert_rigid' defined but not used [-Wunused-function]
   52 | static void invert_rigid(const double m[16], double inv[16])
      |             ^~~~~~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
/bin/sh ./libtool  --tag=CC   --mode=link gcc -pthread -DHAVE_ZLIB -I./Include -I./3rdparty/dartel -I./3rdparty/genus0 -I./3rdparty/nifti -I./3rdparty/nifti -I./3rdparty/s2kit10 -I./3rdparty/gifticlib -I./3rdparty/expat/lib -I./3rdparty/zlib -I./3rdparty/volume_io/Include -I./3rdparty/bicpl-surface/Include -I./3rdparty/bicpl-surface/Include/bicpl -I./3rdparty/nii2mesh  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o libCAT.la -rpath /usr/lib64 3rdparty/volume_io/Geometry/colour.lo 3rdparty/volume_io/Geometry/colour_def.lo 3rdparty/volume_io/Geometry/gaussian.lo 3rdparty/volume_io/Geometry/inverse.lo 3rdparty/volume_io/Geometry/newton.lo 3rdparty/volume_io/Geometry/points.lo 3rdparty/volume_io/Geometry/splines.lo 3rdparty/volume_io/Geometry/tensors.lo 3rdparty/volume_io/Geometry/transforms.lo 3rdparty/volume_io/Prog_utils/alloc.lo 3rdparty/volume_io/Prog_utils/alloc_check.lo 3rdparty/volume_io/Prog_utils/arrays.lo 3rdparty/volume_io/Prog_utils/files.lo 3rdparty/volume_io/Prog_utils/print.lo 3rdparty/volume_io/Prog_utils/progress.lo 3rdparty/volume_io/Prog_utils/string.lo 3rdparty/volume_io/Prog_utils/time.lo 3rdparty/bicpl-surface/ParseArgv.lo 3rdparty/bicpl-surface/Data_structures/build_bintree.lo 3rdparty/bicpl-surface/Data_structures/bintree.lo 3rdparty/bicpl-surface/Data_structures/bitlist.lo 3rdparty/bicpl-surface/Data_structures/hash2_table.lo 3rdparty/bicpl-surface/Data_structures/hash_table.lo 3rdparty/bicpl-surface/Data_structures/object_bintrees.lo 3rdparty/bicpl-surface/Data_structures/point_bintree.lo 3rdparty/bicpl-surface/Data_structures/ray_bintree.lo 3rdparty/bicpl-surface/Data_structures/skiplist.lo 3rdparty/bicpl-surface/Geometry/approx_sqrt.lo 3rdparty/bicpl-surface/Geometry/clip_3d.lo 3rdparty/bicpl-surface/Geometry/closest_point.lo 3rdparty/bicpl-surface/Geometry/curvature.lo 3rdparty/bicpl-surface/Geometry/flatten.lo 3rdparty/bicpl-surface/Geometry/geodesic_distance.lo 3rdparty/bicpl-surface/Geometry/geometry.lo 3rdparty/bicpl-surface/Geometry/intersect.lo 3rdparty/bicpl-surface/Geometry/line_circle.lo 3rdparty/bicpl-surface/Geometry/map_polygons.lo 3rdparty/bicpl-surface/Geometry/path_surface.lo 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.lo 3rdparty/bicpl-surface/Geometry/platonics.lo 3rdparty/bicpl-surface/Geometry/points.lo 3rdparty/bicpl-surface/Geometry/poly_dist.lo 3rdparty/bicpl-surface/Geometry/polygon_sphere.lo 3rdparty/bicpl-surface/Geometry/ray_intersect.lo 3rdparty/bicpl-surface/Geometry/segment_polygons.lo 3rdparty/bicpl-surface/Geometry/smooth_curvature.lo 3rdparty/bicpl-surface/Geometry/smooth_lines.lo 3rdparty/bicpl-surface/Geometry/smooth_polygons.lo 3rdparty/bicpl-surface/Geometry/solve_plane.lo 3rdparty/bicpl-surface/Geometry/subdivide_lines.lo 3rdparty/bicpl-surface/Geometry/subdivide_polygons.lo 3rdparty/bicpl-surface/Geometry/surface_area.lo 3rdparty/bicpl-surface/Geometry/tetrahedrons.lo 3rdparty/bicpl-surface/Geometry/tubes.lo 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.lo 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.lo 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.lo 3rdparty/bicpl-surface/Numerical/amoeba.lo 3rdparty/bicpl-surface/Numerical/gaussian.lo 3rdparty/bicpl-surface/Numerical/gradient_minimize.lo 3rdparty/bicpl-surface/Numerical/histogram.lo 3rdparty/bicpl-surface/Numerical/least_squares.lo 3rdparty/bicpl-surface/Numerical/matrix_svd.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq.lo 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.lo 3rdparty/bicpl-surface/Numerical/numerical.lo 3rdparty/bicpl-surface/Numerical/quadratic.lo 3rdparty/bicpl-surface/Numerical/real_quadratic.lo 3rdparty/bicpl-surface/Numerical/statistics.lo 3rdparty/bicpl-surface/Numerical/t_stat.lo 3rdparty/bicpl-surface/Objects/coalesce.lo 3rdparty/bicpl-surface/Objects/colours.lo 3rdparty/bicpl-surface/Objects/graphics_io.lo 3rdparty/bicpl-surface/Objects/lines.lo 3rdparty/bicpl-surface/Objects/markers.lo 3rdparty/bicpl-surface/Objects/models.lo 3rdparty/bicpl-surface/Objects/object_io.lo 3rdparty/bicpl-surface/Objects/objects.lo 3rdparty/bicpl-surface/Objects/pixels.lo 3rdparty/bicpl-surface/Objects/poly_neighs.lo 3rdparty/bicpl-surface/Objects/polygons.lo 3rdparty/bicpl-surface/Objects/quadmesh.lo 3rdparty/bicpl-surface/Objects/rgb_lookup.lo 3rdparty/bicpl-surface/Objects/tag_objects.lo 3rdparty/bicpl-surface/Objects/text.lo 3rdparty/bicpl-surface/Prog_utils/arguments.lo 3rdparty/bicpl-surface/Prog_utils/globals.lo 3rdparty/bicpl-surface/Prog_utils/time.lo 3rdparty/bicpl-surface/Transforms/compute_tps.lo 3rdparty/bicpl-surface/Transforms/compute_xfm.lo 3rdparty/bicpl-surface/Transforms/matrix_basics.lo 3rdparty/bicpl-surface/Transforms/optimize.lo 3rdparty/bicpl-surface/Transforms/procrustes.lo 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.lo 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.lo 3rdparty/bicpl-surface/Transforms/transform_io.lo 3rdparty/bicpl-surface/Transforms/transforms.lo 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.lo 3rdparty/bicpl-surface/bicpl_clapack/d_sign.lo 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dcopy.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemm.lo 3rdparty/bicpl-surface/bicpl_clapack/dgemv.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.lo 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.lo 3rdparty/bicpl-surface/bicpl_clapack/dger.lo 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.lo 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.lo 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.lo 3rdparty/bicpl-surface/bicpl_clapack/dlamch.lo 3rdparty/bicpl-surface/bicpl_clapack/dlange.lo 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarf.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlarft.lo 3rdparty/bicpl-surface/bicpl_clapack/dlartg.lo 3rdparty/bicpl-surface/bicpl_clapack/dlas2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlascl.lo 3rdparty/bicpl-surface/bicpl_clapack/dlaset.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasr.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.lo 3rdparty/bicpl-surface/bicpl_clapack/dlassq.lo 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.lo 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.lo 3rdparty/bicpl-surface/bicpl_clapack/dorglq.lo 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.lo 3rdparty/bicpl-surface/bicpl_clapack/dormbr.lo 3rdparty/bicpl-surface/bicpl_clapack/dorml2.lo 3rdparty/bicpl-surface/bicpl_clapack/dormlq.lo 3rdparty/bicpl-surface/bicpl_clapack/dormqr.lo 3rdparty/bicpl-surface/bicpl_clapack/drot.lo 3rdparty/bicpl-surface/bicpl_clapack/dscal.lo 3rdparty/bicpl-surface/bicpl_clapack/dswap.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.lo 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.lo 3rdparty/bicpl-surface/bicpl_clapack/exit_.lo 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.lo 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.lo 3rdparty/bicpl-surface/bicpl_clapack/lsame.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.lo 3rdparty/bicpl-surface/bicpl_clapack/pow_di.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cat.lo 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.lo 3rdparty/bicpl-surface/bicpl_clapack/s_copy.lo 3rdparty/bicpl-surface/bicpl_clapack/xerbla.lo     3rdparty/dartel/diffeosphere.lo 3rdparty/dartel/optimizersphere.lo 3rdparty/dartel/diffeopoly.lo 3rdparty/nii2mesh/quadric.lo 3rdparty/s2kit10/FST_semi_fly.lo 3rdparty/s2kit10/cospmls.lo 3rdparty/s2kit10/makeweights.lo 3rdparty/s2kit10/pmls.lo 3rdparty/s2kit10/seminaive.lo 3rdparty/s2kit10/naive_synthesis.lo 3rdparty/s2kit10/primitive.lo Lib/CAT_CorrectThicknessFolding.lo Lib/CAT_SurfWarpDartel.lo Lib/CAT_WarpDemons.lo Lib/CAT_ROIStats.lo Lib/CAT_Vol2SurfUtils.lo Lib/CAT_VolPbt.lo Lib/CAT_Sheetness.lo Lib/CAT_PpmSulci.lo Lib/CAT_Calc.lo Lib/CAT_AverageSurf.lo Lib/CAT_AverageValues.lo Lib/CAT_SurfPialWhite.lo Lib/CAT_SurfPialProfile.lo Lib/CAT_SurfLaplacian.lo Lib/CAT_Math.lo Lib/CAT_GlmFormula.lo Lib/CAT_Surf.lo Lib/CAT_SurfInfo.lo Lib/CAT_Warp.lo Lib/CAT_Curvature.lo Lib/CAT_SurfaceIO.lo Lib/CAT_Map.lo Lib/CAT_Smooth.lo Lib/CAT_Intersect.lo Lib/CAT_Octree.lo Lib/CAT_Resample.lo Lib/CAT_Topology.lo Lib/CAT_Defect.lo Lib/CAT_Patch.lo Lib/CAT_Complexity.lo Lib/CAT_Refine.lo Lib/CAT_Interpolate.lo Lib/CAT_Isometrics.lo Lib/CAT_Separate.lo Lib/CAT_ConvexHull.lo Lib/CAT_Gyrification.lo Lib/CAT_DepthPotential.lo Lib/CAT_Vol.lo Lib/CAT_LayerSmooth.lo Lib/CAT_Kmeans.lo Lib/CAT_Amap.lo Lib/CAT_Bmap.lo Lib/CAT_NiftiLib.lo Lib/CAT_Sanlm.lo Lib/CAT_Ornlm.lo Lib/CAT_Deform.lo Lib/CAT_SPH.lo Lib/CAT_SafeAlloc.lo Lib/CAT_BBReg.lo Lib/CAT_VolumeReg.lo -lfftw3 -lgiftiio -lniftiio -lznz 
copying selected object files to avoid basename conflicts...
libtool: link: ln 3rdparty/bicpl-surface/Geometry/points.o .libs/libCAT.lax/lt1-points.o || cp 3rdparty/bicpl-surface/Geometry/points.o .libs/libCAT.lax/lt1-points.o
libtool: link: ln 3rdparty/bicpl-surface/Numerical/gaussian.o .libs/libCAT.lax/lt2-gaussian.o || cp 3rdparty/bicpl-surface/Numerical/gaussian.o .libs/libCAT.lax/lt2-gaussian.o
libtool: link: ln 3rdparty/bicpl-surface/Prog_utils/time.o .libs/libCAT.lax/lt3-time.o || cp 3rdparty/bicpl-surface/Prog_utils/time.o .libs/libCAT.lax/lt3-time.o
libtool: link: ln 3rdparty/bicpl-surface/Transforms/transforms.o .libs/libCAT.lax/lt4-transforms.o || cp 3rdparty/bicpl-surface/Transforms/transforms.o .libs/libCAT.lax/lt4-transforms.o
libtool: link: ar cr .libs/libCAT.a 3rdparty/volume_io/Geometry/colour.o 3rdparty/volume_io/Geometry/colour_def.o 3rdparty/volume_io/Geometry/gaussian.o 3rdparty/volume_io/Geometry/inverse.o 3rdparty/volume_io/Geometry/newton.o 3rdparty/volume_io/Geometry/points.o 3rdparty/volume_io/Geometry/splines.o 3rdparty/volume_io/Geometry/tensors.o 3rdparty/volume_io/Geometry/transforms.o 3rdparty/volume_io/Prog_utils/alloc.o 3rdparty/volume_io/Prog_utils/alloc_check.o 3rdparty/volume_io/Prog_utils/arrays.o 3rdparty/volume_io/Prog_utils/files.o 3rdparty/volume_io/Prog_utils/print.o 3rdparty/volume_io/Prog_utils/progress.o 3rdparty/volume_io/Prog_utils/string.o 3rdparty/volume_io/Prog_utils/time.o 3rdparty/bicpl-surface/ParseArgv.o 3rdparty/bicpl-surface/Data_structures/build_bintree.o 3rdparty/bicpl-surface/Data_structures/bintree.o 3rdparty/bicpl-surface/Data_structures/bitlist.o 3rdparty/bicpl-surface/Data_structures/hash2_table.o 3rdparty/bicpl-surface/Data_structures/hash_table.o 3rdparty/bicpl-surface/Data_structures/object_bintrees.o 3rdparty/bicpl-surface/Data_structures/point_bintree.o 3rdparty/bicpl-surface/Data_structures/ray_bintree.o 3rdparty/bicpl-surface/Data_structures/skiplist.o 3rdparty/bicpl-surface/Geometry/approx_sqrt.o 3rdparty/bicpl-surface/Geometry/clip_3d.o 3rdparty/bicpl-surface/Geometry/closest_point.o 3rdparty/bicpl-surface/Geometry/curvature.o 3rdparty/bicpl-surface/Geometry/flatten.o 3rdparty/bicpl-surface/Geometry/geodesic_distance.o 3rdparty/bicpl-surface/Geometry/geometry.o 3rdparty/bicpl-surface/Geometry/intersect.o 3rdparty/bicpl-surface/Geometry/line_circle.o 3rdparty/bicpl-surface/Geometry/map_polygons.o 3rdparty/bicpl-surface/Geometry/path_surface.o 3rdparty/bicpl-surface/Geometry/plane_polygon_intersect.o 3rdparty/bicpl-surface/Geometry/platonics.o .libs/libCAT.lax/lt1-points.o 3rdparty/bicpl-surface/Geometry/poly_dist.o 3rdparty/bicpl-surface/Geometry/polygon_sphere.o 3rdparty/bicpl-surface/Geometry/ray_intersect.o 3rdparty/bicpl-surface/Geometry/segment_polygons.o 3rdparty/bicpl-surface/Geometry/smooth_curvature.o 3rdparty/bicpl-surface/Geometry/smooth_lines.o 3rdparty/bicpl-surface/Geometry/smooth_polygons.o 3rdparty/bicpl-surface/Geometry/solve_plane.o 3rdparty/bicpl-surface/Geometry/subdivide_lines.o 3rdparty/bicpl-surface/Geometry/subdivide_polygons.o 3rdparty/bicpl-surface/Geometry/surface_area.o 3rdparty/bicpl-surface/Geometry/tetrahedrons.o 3rdparty/bicpl-surface/Geometry/tubes.o 3rdparty/bicpl-surface/Marching_cubes/isosurfaces.o 3rdparty/bicpl-surface/Marching_cubes/marching_cubes.o 3rdparty/bicpl-surface/Marching_cubes/marching_no_holes.o 3rdparty/bicpl-surface/Marching_cubes/marching_tetra.o 3rdparty/bicpl-surface/Numerical/amoeba.o .libs/libCAT.lax/lt2-gaussian.o 3rdparty/bicpl-surface/Numerical/gradient_minimize.o 3rdparty/bicpl-surface/Numerical/histogram.o 3rdparty/bicpl-surface/Numerical/least_squares.o 3rdparty/bicpl-surface/Numerical/matrix_svd.o 3rdparty/bicpl-surface/Numerical/minimize_lsq.o 3rdparty/bicpl-surface/Numerical/minimize_lsq_include.o 3rdparty/bicpl-surface/Numerical/numerical.o 3rdparty/bicpl-surface/Numerical/quadratic.o 3rdparty/bicpl-surface/Numerical/real_quadratic.o 3rdparty/bicpl-surface/Numerical/statistics.o 3rdparty/bicpl-surface/Numerical/t_stat.o 3rdparty/bicpl-surface/Objects/coalesce.o 3rdparty/bicpl-surface/Objects/colours.o 3rdparty/bicpl-surface/Objects/graphics_io.o 3rdparty/bicpl-surface/Objects/lines.o 3rdparty/bicpl-surface/Objects/markers.o 3rdparty/bicpl-surface/Objects/models.o 3rdparty/bicpl-surface/Objects/object_io.o 3rdparty/bicpl-surface/Objects/objects.o 3rdparty/bicpl-surface/Objects/pixels.o 3rdparty/bicpl-surface/Objects/poly_neighs.o 3rdparty/bicpl-surface/Objects/polygons.o 3rdparty/bicpl-surface/Objects/quadmesh.o 3rdparty/bicpl-surface/Objects/rgb_lookup.o 3rdparty/bicpl-surface/Objects/tag_objects.o 3rdparty/bicpl-surface/Objects/text.o 3rdparty/bicpl-surface/Prog_utils/arguments.o 3rdparty/bicpl-surface/Prog_utils/globals.o .libs/libCAT.lax/lt3-time.o 3rdparty/bicpl-surface/Transforms/compute_tps.o 3rdparty/bicpl-surface/Transforms/compute_xfm.o 3rdparty/bicpl-surface/Transforms/matrix_basics.o 3rdparty/bicpl-surface/Transforms/optimize.o 3rdparty/bicpl-surface/Transforms/procrustes.o 3rdparty/bicpl-surface/Transforms/rotmat_to_ang.o 3rdparty/bicpl-surface/Transforms/safe_compute_xfm.o 3rdparty/bicpl-surface/Transforms/transform_io.o .libs/libCAT.lax/lt4-transforms.o 3rdparty/bicpl-surface/bicpl_clapack/F77_aloc.o 3rdparty/bicpl-surface/bicpl_clapack/d_sign.o 3rdparty/bicpl-surface/bicpl_clapack/dbdsqr.o 3rdparty/bicpl-surface/bicpl_clapack/dcopy.o 3rdparty/bicpl-surface/bicpl_clapack/dgebd2.o 3rdparty/bicpl-surface/bicpl_clapack/dgebrd.o 3rdparty/bicpl-surface/bicpl_clapack/dgelq2.o 3rdparty/bicpl-surface/bicpl_clapack/dgelqf.o 3rdparty/bicpl-surface/bicpl_clapack/dgemm.o 3rdparty/bicpl-surface/bicpl_clapack/dgemv.o 3rdparty/bicpl-surface/bicpl_clapack/dgeqr2.o 3rdparty/bicpl-surface/bicpl_clapack/dgeqrf.o 3rdparty/bicpl-surface/bicpl_clapack/dger.o 3rdparty/bicpl-surface/bicpl_clapack/dgesvd.o 3rdparty/bicpl-surface/bicpl_clapack/dlabrd.o 3rdparty/bicpl-surface/bicpl_clapack/dlacpy.o 3rdparty/bicpl-surface/bicpl_clapack/dlamch.o 3rdparty/bicpl-surface/bicpl_clapack/dlange.o 3rdparty/bicpl-surface/bicpl_clapack/dlapy2.o 3rdparty/bicpl-surface/bicpl_clapack/dlarf.o 3rdparty/bicpl-surface/bicpl_clapack/dlarfb.o 3rdparty/bicpl-surface/bicpl_clapack/dlarfg.o 3rdparty/bicpl-surface/bicpl_clapack/dlarft.o 3rdparty/bicpl-surface/bicpl_clapack/dlartg.o 3rdparty/bicpl-surface/bicpl_clapack/dlas2.o 3rdparty/bicpl-surface/bicpl_clapack/dlascl.o 3rdparty/bicpl-surface/bicpl_clapack/dlaset.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq1.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq2.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq3.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq4.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq5.o 3rdparty/bicpl-surface/bicpl_clapack/dlasq6.o 3rdparty/bicpl-surface/bicpl_clapack/dlasr.o 3rdparty/bicpl-surface/bicpl_clapack/dlasrt.o 3rdparty/bicpl-surface/bicpl_clapack/dlassq.o 3rdparty/bicpl-surface/bicpl_clapack/dlasv2.o 3rdparty/bicpl-surface/bicpl_clapack/dnrm2.o 3rdparty/bicpl-surface/bicpl_clapack/dorg2r.o 3rdparty/bicpl-surface/bicpl_clapack/dorgbr.o 3rdparty/bicpl-surface/bicpl_clapack/dorgl2.o 3rdparty/bicpl-surface/bicpl_clapack/dorglq.o 3rdparty/bicpl-surface/bicpl_clapack/dorgqr.o 3rdparty/bicpl-surface/bicpl_clapack/dorm2r.o 3rdparty/bicpl-surface/bicpl_clapack/dormbr.o 3rdparty/bicpl-surface/bicpl_clapack/dorml2.o 3rdparty/bicpl-surface/bicpl_clapack/dormlq.o 3rdparty/bicpl-surface/bicpl_clapack/dormqr.o 3rdparty/bicpl-surface/bicpl_clapack/drot.o 3rdparty/bicpl-surface/bicpl_clapack/dscal.o 3rdparty/bicpl-surface/bicpl_clapack/dswap.o 3rdparty/bicpl-surface/bicpl_clapack/dtrmm.o 3rdparty/bicpl-surface/bicpl_clapack/dtrmv.o 3rdparty/bicpl-surface/bicpl_clapack/exit_.o 3rdparty/bicpl-surface/bicpl_clapack/ieeeck.o 3rdparty/bicpl-surface/bicpl_clapack/ilaenv.o 3rdparty/bicpl-surface/bicpl_clapack/lsame.o 3rdparty/bicpl-surface/bicpl_clapack/pow_dd.o 3rdparty/bicpl-surface/bicpl_clapack/pow_di.o 3rdparty/bicpl-surface/bicpl_clapack/s_cat.o 3rdparty/bicpl-surface/bicpl_clapack/s_cmp.o 3rdparty/bicpl-surface/bicpl_clapack/s_copy.o 3rdparty/bicpl-surface/bicpl_clapack/xerbla.o 3rdparty/dartel/diffeosphere.o 3rdparty/dartel/optimizersphere.o 3rdparty/dartel/diffeopoly.o 3rdparty/nii2mesh/quadric.o 3rdparty/s2kit10/FST_semi_fly.o 3rdparty/s2kit10/cospmls.o 3rdparty/s2kit10/makeweights.o 3rdparty/s2kit10/pmls.o 3rdparty/s2kit10/seminaive.o 3rdparty/s2kit10/naive_synthesis.o 3rdparty/s2kit10/primitive.o Lib/CAT_CorrectThicknessFolding.o Lib/CAT_SurfWarpDartel.o Lib/CAT_WarpDemons.o Lib/CAT_ROIStats.o Lib/CAT_Vol2SurfUtils.o Lib/CAT_VolPbt.o Lib/CAT_Sheetness.o Lib/CAT_PpmSulci.o Lib/CAT_Calc.o Lib/CAT_AverageSurf.o Lib/CAT_AverageValues.o Lib/CAT_SurfPialWhite.o Lib/CAT_SurfPialProfile.o Lib/CAT_SurfLaplacian.o Lib/CAT_Math.o Lib/CAT_GlmFormula.o Lib/CAT_Surf.o Lib/CAT_SurfInfo.o Lib/CAT_Warp.o Lib/CAT_Curvature.o Lib/CAT_SurfaceIO.o Lib/CAT_Map.o Lib/CAT_Smooth.o Lib/CAT_Intersect.o Lib/CAT_Octree.o Lib/CAT_Resample.o Lib/CAT_Topology.o Lib/CAT_Defect.o Lib/CAT_Patch.o Lib/CAT_Complexity.o Lib/CAT_Refine.o Lib/CAT_Interpolate.o Lib/CAT_Isometrics.o Lib/CAT_Separate.o Lib/CAT_ConvexHull.o Lib/CAT_Gyrification.o Lib/CAT_DepthPotential.o Lib/CAT_Vol.o Lib/CAT_LayerSmooth.o Lib/CAT_Kmeans.o Lib/CAT_Amap.o Lib/CAT_Bmap.o Lib/CAT_NiftiLib.o Lib/CAT_Sanlm.o Lib/CAT_Ornlm.o Lib/CAT_Deform.o Lib/CAT_SPH.o Lib/CAT_SafeAlloc.o Lib/CAT_BBReg.o Lib/CAT_VolumeReg.o
libtool: link: ranlib .libs/libCAT.a
libtool: link: rm -fr .libs/libCAT.lax
libtool: link: ( cd ".libs" && rm -f "libCAT.la" && ln -s "../libCAT.la" "libCAT.la" )
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Making all in Progs
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSheet2Surf.o CAT_SurfSheet2Surf.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
CAT_SurfSheet2Surf.c: In function ‘main’:
CAT_SurfSheet2Surf.c:37:23: warning: unused variable ‘n_done’ [-Wunused-variable]
   37 |     int          ind, n_done, interpolate;
      |                       ^~~~~~
CAT_SurfSheet2Surf.c:37:18: warning: unused variable ‘ind’ [-Wunused-variable]
   37 |     int          ind, n_done, interpolate;
      |                  ^~~
CAT_SurfSheet2Surf.c:36:26: warning: unused variable ‘poly’ [-Wunused-variable]
   36 |     int          degree, poly, size_map[2];
      |                          ^~~~
CAT_SurfSheet2Surf.c:36:18: warning: unused variable ‘degree’ [-Wunused-variable]
   36 |     int          degree, poly, size_map[2];
      |                  ^~~~~~
CAT_SurfSheet2Surf.c:35:18: warning: unused variable ‘i’ [-Wunused-variable]
   35 |     int          i, n_objects;
      |                  ^
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfCurvature.o CAT_SurfCurvature.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2Sheet.o CAT_Surf2Sheet.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
CAT_Surf2Sheet.c: In function ‘main’:
CAT_Surf2Sheet.c:61:35: warning: unused variable ‘y’ [-Wunused-variable]
   61 |     int          i, n_objects, x, y;
      |                                   ^
CAT_Surf2Sheet.c:61:32: warning: unused variable ‘x’ [-Wunused-variable]
   61 |     int          i, n_objects, x, y;
      |                                ^
CAT_Surf2Sheet.c:123:13: warning: ‘sphere’ may be used uninitialized [-Wmaybe-uninitialized]
  123 |             create_tetrahedral_sphere(&centre, 1.0, 1.0, 1.0, (2 * (n_values-2)),
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                   sphere);
      |                   ~~~~~~~
CAT_Surf2Sheet.c:60:36: note: ‘sphere’ was declared here
   60 |     polygons_struct    *polygons, *sphere;
      |                                    ^~~~~~
CAT_Surf2Sheet.c:108:61: warning: ‘polygons’ may be used uninitialized [-Wmaybe-uninitialized]
  108 |         values = (double *) malloc(sizeof(double) * polygons->n_points);
      |                                                     ~~~~~~~~^~~~~~~~~~
CAT_Surf2Sheet.c:60:25: note: ‘polygons’ was declared here
   60 |     polygons_struct    *polygons, *sphere;
      |                         ^~~~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfApplyWarp.o CAT_SurfApplyWarp.c
CAT_SurfApplyWarp.c: In function ‘main’:
CAT_SurfApplyWarp.c:44:28: warning: unused variable ‘i’ [-Wunused-variable]
   44 |     int         n_objects, i, xy_size;
      |                            ^
In file included from CAT_SurfApplyWarp.c:16:
../3rdparty/dartel/dartel.h: At top level:
../3rdparty/dartel/dartel.h:85:12: warning: ‘neumann’ declared ‘static’ but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
../3rdparty/dartel/dartel.h:117:13: warning: ‘zeros’ declared ‘static’ but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
../3rdparty/dartel/dartel.h:118:13: warning: ‘copy’ declared ‘static’ but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
../3rdparty/dartel/dartel.h:119:13: warning: ‘addto’ declared ‘static’ but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
CAT_SurfApplyWarp.c: In function ‘main’:
CAT_SurfApplyWarp.c:78:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   78 |     fread(&size_map, 2, sizeof(int), infp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfApplyWarp.c:79:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   79 |     fread(&shift, 2, sizeof(int), infp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfApplyWarp.c:91:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fread(inflow, xy_size*2, sizeof(double), infp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfArea.o CAT_SurfArea.c
CAT_SurfArea.c: In function ‘main’:
CAT_SurfArea.c:54:23: warning: unused variable ‘point_done’ [-Wunused-variable]
   54 |     signed char      *point_done;
      |                       ^~~~~~~~~~
CAT_SurfArea.c:53:18: warning: unused variable ‘points’ [-Wunused-variable]
   53 |     Point        points[MAX_POINTS_PER_POLYGON];
      |                  ^~~~~~
CAT_SurfArea.c:51:20: warning: unused variable ‘area’ [-Wunused-variable]
   51 |     double         area, surface_area;
      |                    ^~~~
CAT_SurfArea.c:48:18: warning: unused variable ‘poly’ [-Wunused-variable]
   48 |     int          poly, n_objects, i;
      |                  ^~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfApplyWarpValues.o CAT_SurfApplyWarpValues.c
In file included from CAT_SurfApplyWarpValues.c:15:
../3rdparty/dartel/dartel.h:85:12: warning: ‘neumann’ declared ‘static’ but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
../3rdparty/dartel/dartel.h:117:13: warning: ‘zeros’ declared ‘static’ but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
../3rdparty/dartel/dartel.h:118:13: warning: ‘copy’ declared ‘static’ but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
../3rdparty/dartel/dartel.h:119:13: warning: ‘addto’ declared ‘static’ but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
CAT_SurfApplyWarpValues.c: In function ‘main’:
CAT_SurfApplyWarpValues.c:64:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   64 |     fread(&size_map, 2, sizeof(int), infp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfApplyWarpValues.c:65:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   65 |     fread(&shift, 2, sizeof(int), infp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfApplyWarpValues.c:77:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   77 |     fread(inflow, size_map[0]*size_map[1]*2, sizeof(double), infp);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Vol2Surf.o CAT_Vol2Surf.c
CAT_Vol2Surf.c: In function ‘main’:
CAT_Vol2Surf.c:149:51: warning: unused variable ‘n_values’ [-Wunused-variable]
  149 |     int n_objects, n_arrays, n_labels, *in_annot, n_values, dims[3];
      |                                                   ^~~~~~~~
CAT_Vol2Surf.c:525:29: warning: ‘values2d’ may be used uninitialized [-Wmaybe-uninitialized]
  525 |                     values2d[i][j] = (value < frange[0]) ? frange[0] : value;
      |                     ~~~~~~~~^~~
CAT_Vol2Surf.c:155:49: note: ‘values2d’ was declared here
  155 |     double *area_inner, *area_outer, *values, **values2d, *thickness;
      |                                                 ^~~~~~~~
CAT_Vol2Surf.c:500:56: warning: ‘area_inner’ may be used uninitialized [-Wmaybe-uninitialized]
  500 |                         if ((area_outer[i] - area_inner[i]) != 0)
      |                                              ~~~~~~~~~~^~~
CAT_Vol2Surf.c:155:13: note: ‘area_inner’ was declared here
  155 |     double *area_inner, *area_outer, *values, **values2d, *thickness;
      |             ^~~~~~~~~~
CAT_Vol2Surf.c:500:40: warning: ‘area_outer’ may be used uninitialized [-Wmaybe-uninitialized]
  500 |                         if ((area_outer[i] - area_inner[i]) != 0)
      |                              ~~~~~~~~~~^~~
CAT_Vol2Surf.c:155:26: note: ‘area_outer’ was declared here
  155 |     double *area_inner, *area_outer, *values, **values2d, *thickness;
      |                          ^~~~~~~~~~
CAT_Vol2Surf.c:159:13: warning: ‘roi_values’ may be used uninitialized [-Wmaybe-uninitialized]
  159 |     double *roi_values;
      |             ^~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from ../Include/CAT_SurfaceIO.h:13,
                 from CAT_Vol2Surf.c:22:
In function ‘fprintf’,
    inlined from ‘main’ at CAT_Vol2Surf.c:575:13:
/usr/include/bits/stdio2.h:111:10: warning: ‘fp’ may be used uninitialized [-Wmaybe-uninitialized]
  111 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
CAT_Vol2Surf.c: In function ‘main’:
CAT_Vol2Surf.c:163:11: note: ‘fp’ was declared here
  163 |     FILE *fp;
      |           ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfInfo.o CAT_SurfInfo.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfRatio.o CAT_SurfRatio.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmooth.o CAT_SurfSmooth.c
CAT_SurfSmooth.c: In function ‘main’:
CAT_SurfSmooth.c:40:26: warning: unused variable ‘neighbours’ [-Wunused-variable]
   40 |     int *n_neighbours, **neighbours;
      |                          ^~~~~~~~~~
CAT_SurfSmooth.c:40:10: warning: unused variable ‘n_neighbours’ [-Wunused-variable]
   40 |     int *n_neighbours, **neighbours;
      |          ^~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfPlotValuesAtMaximum.o CAT_SurfPlotValuesAtMaximum.c
CAT_SurfPlotValuesAtMaximum.c: In function ‘main’:
CAT_SurfPlotValuesAtMaximum.c:32:22: warning: unused variable ‘output_value’ [-Wunused-variable]
   32 |     double           output_value, *values, max_value;
      |                      ^~~~~~~~~~~~
CAT_SurfPlotValuesAtMaximum.c:31:40: warning: unused variable ‘j’ [-Wunused-variable]
   31 |     int          n_files, n_values, i, j, max_index;
      |                                        ^
CAT_SurfPlotValuesAtMaximum.c:30:22: warning: unused variable ‘format’ [-Wunused-variable]
   30 |     File_formats     format;
      |                      ^~~~~~
CAT_SurfPlotValuesAtMaximum.c:29:19: warning: unused variable ‘infp’ [-Wunused-variable]
   29 |     FILE         *infp, *outfp;
      |                   ^~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from CAT_SurfPlotValuesAtMaximum.c:10:
In function ‘fprintf’,
    inlined from ‘main’ at CAT_SurfPlotValuesAtMaximum.c:58:5:
/usr/include/bits/stdio2.h:111:10: warning: ‘max_index’ may be used uninitialized [-Wmaybe-uninitialized]
  111 |   return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |                         __va_arg_pack ());
      |                         ~~~~~~~~~~~~~~~~~
CAT_SurfPlotValuesAtMaximum.c: In function ‘main’:
CAT_SurfPlotValuesAtMaximum.c:31:43: note: ‘max_index’ was declared here
   31 |     int          n_files, n_values, i, j, max_index;
      |                                           ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfPlotValuesAtPoint.o CAT_SurfPlotValuesAtPoint.c
CAT_SurfPlotValuesAtPoint.c: In function ‘main’:
CAT_SurfPlotValuesAtPoint.c:37:28: warning: unused variable ‘value’ [-Wunused-variable]
   37 |     double dist, min_dist, value;
      |                            ^~~~~
CAT_SurfPlotValuesAtPoint.c:32:9: warning: unused variable ‘poly’ [-Wunused-variable]
   32 |     int poly, n_objects, pidx, min_index, n_files;
      |         ^~~~
CAT_SurfPlotValuesAtPoint.c:98:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   98 |             fgets(line, 256, infp);
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from CAT_SurfPlotValuesAtPoint.c:10:
In function ‘printf’,
    inlined from ‘main’ at CAT_SurfPlotValuesAtPoint.c:91:5:
/usr/include/bits/stdio2.h:118:10: warning: ‘min_index’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfPlotValuesAtPoint.c: In function ‘main’:
CAT_SurfPlotValuesAtPoint.c:32:32: note: ‘min_index’ was declared here
   32 |     int poly, n_objects, pidx, min_index, n_files;
      |                                ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfMeasure2Txt.o CAT_SurfMeasure2Txt.c
CAT_SurfMeasure2Txt.c: In function ‘main’:
CAT_SurfMeasure2Txt.c:28:22: warning: unused variable ‘format’ [-Wunused-variable]
   28 |     File_formats     format;
      |                      ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfConvert.o CAT_SurfConvert.c
CAT_SurfConvert.c: In function ‘main’:
CAT_SurfConvert.c:37:23: warning: unused variable ‘done_flags’ [-Wunused-variable]
   37 |     signed char      *done_flags;
      |                       ^~~~~~~~~~
CAT_SurfConvert.c:36:25: warning: unused variable ‘polygons’ [-Wunused-variable]
   36 |     polygons_struct    *polygons;
      |                         ^~~~~~~~
CAT_SurfConvert.c:34:18: warning: unused variable ‘status’ [-Wunused-variable]
   34 |     int          status, n_objects;
      |                  ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2Sphere.o CAT_Surf2Sphere.c
CAT_Surf2Sphere.c: In function ‘main’:
CAT_Surf2Sphere.c:49:12: warning: unused variable ‘surfarea’ [-Wunused-variable]
   49 |     double surfarea;
      |            ^~~~~~~~
CAT_Surf2Sphere.c:48:9: warning: unused variable ‘fingerSmoothingIters’ [-Wunused-variable]
   48 |     int fingerSmoothingIters;
      |         ^~~~~~~~~~~~~~~~~~~~
CAT_Surf2Sphere.c:47:13: warning: unused variable ‘enableFingerSmoothing’ [-Wunused-variable]
   47 |     BOOLEAN enableFingerSmoothing = 1;
      |             ^~~~~~~~~~~~~~~~~~~~~
CAT_Surf2Sphere.c:43:20: warning: unused variable ‘i’ [-Wunused-variable]
   43 |     int n_objects, i, stop_at, verbose;
      |                    ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSeparatePolygons.o CAT_SurfSeparatePolygons.c
CAT_SurfSeparatePolygons.c: In function ‘main’:
CAT_SurfSeparatePolygons.c:33:46: warning: unused variable ‘object2’ [-Wunused-variable]
   33 |     object_struct  **object_list, **object, *object2;
      |                                              ^~~~~~~
CAT_SurfSeparatePolygons.c:31:16: warning: unused variable ‘i’ [-Wunused-variable]
   31 |     int        i, desired_index;
      |                ^
CAT_SurfSeparatePolygons.c:29:16: warning: unused variable ‘out_file’ [-Wunused-variable]
   29 |     char       out_file[512];
      |                ^~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSeparateClusters.o CAT_SurfSeparateClusters.c
CAT_SurfSeparateClusters.c: In function ‘make_connected_components_values’:
CAT_SurfSeparateClusters.c:35:24: warning: unused variable ‘queue’ [-Wunused-variable]
   35 |     QUEUE_STRUCT(int)  queue;
      |                        ^~~~~
CAT_SurfSeparateClusters.c:32:18: warning: unused variable ‘neigh’ [-Wunused-variable]
   32 |     int          neigh, j;
      |                  ^~~~~
CAT_SurfSeparateClusters.c:31:31: warning: unused variable ‘size’ [-Wunused-variable]
   31 |     int          point, edge, size;
      |                               ^~~~
CAT_SurfSeparateClusters.c:31:25: warning: unused variable ‘edge’ [-Wunused-variable]
   31 |     int          point, edge, size;
      |                         ^~~~
CAT_SurfSeparateClusters.c: In function ‘separate_cluster’:
CAT_SurfSeparateClusters.c:80:46: warning: unused variable ‘c’ [-Wunused-variable]
   80 |     int     *new_point_ids, n_objects, comp, c;
      |                                              ^
CAT_SurfSeparateClusters.c:80:40: warning: unused variable ‘comp’ [-Wunused-variable]
   80 |     int     *new_point_ids, n_objects, comp, c;
      |                                        ^~~~
CAT_SurfSeparateClusters.c:80:14: warning: unused variable ‘new_point_ids’ [-Wunused-variable]
   80 |     int     *new_point_ids, n_objects, comp, c;
      |              ^~~~~~~~~~~~~
CAT_SurfSeparateClusters.c:79:40: warning: unused variable ‘size’ [-Wunused-variable]
   79 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                                        ^~~~
CAT_SurfSeparateClusters.c:79:32: warning: unused variable ‘vertex’ [-Wunused-variable]
   79 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                                ^~~~~~
CAT_SurfSeparateClusters.c:79:25: warning: unused variable ‘point’ [-Wunused-variable]
   79 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                         ^~~~~
CAT_SurfSeparateClusters.c:79:18: warning: unused variable ‘p_ind’ [-Wunused-variable]
   79 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |                  ^~~~~
CAT_SurfSeparateClusters.c:79:13: warning: unused variable ‘ind’ [-Wunused-variable]
   79 |     int     ind, p_ind, point, vertex, size, i, j, tmp;
      |             ^~~
CAT_SurfSeparateClusters.c: In function ‘main’:
CAT_SurfSeparateClusters.c:119:16: warning: unused variable ‘out_file’ [-Wunused-variable]
  119 |     char       out_file[512];
      |                ^~~~~~~~
CAT_SurfSeparateClusters.c: In function ‘separate_cluster’:
CAT_SurfSeparateClusters.c:112:11: warning: ‘n_objects’ is used uninitialized [-Wuninitialized]
  112 |     return(n_objects);
      |           ^
CAT_SurfSeparateClusters.c:80:29: note: ‘n_objects’ was declared here
   80 |     int     *new_point_ids, n_objects, comp, c;
      |                             ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResampleSpherical.o CAT_SurfResampleSpherical.c
CAT_SurfResampleSpherical.c: In function ‘main’:
CAT_SurfResampleSpherical.c:43:49: warning: unused variable ‘dist’ [-Wunused-variable]
   43 |     double       *input_values, *output_values, dist;
      |                                                 ^~~~
CAT_SurfResampleSpherical.c:35:32: warning: unused variable ‘n_intersections’ [-Wunused-variable]
   35 |     int        poly, n_points, n_intersections, n_values;
      |                                ^~~~~~~~~~~~~~~
CAT_SurfResampleSpherical.c:34:19: warning: unused variable ‘j’ [-Wunused-variable]
   34 |     int        i, j, k;
      |                   ^
CAT_SurfResampleSpherical.c:32:27: warning: unused variable ‘point’ [-Wunused-variable]
   32 |     int        n_objects, point;
      |                           ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResample.o CAT_SurfResample.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAreaDistortion.o CAT_SurfAreaDistortion.c
CAT_SurfAreaDistortion.c: In function ‘main’:
CAT_SurfAreaDistortion.c:152:12: warning: ‘value’ may be used uninitialized [-Wmaybe-uninitialized]
  152 |         if (value < PINF && value > NINF)
      |            ^
CAT_SurfAreaDistortion.c:59:38: note: ‘value’ was declared here
   59 |     double        *ad_values, ratio, value;
      |                                      ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResampleMulti.o CAT_SurfResampleMulti.c
CAT_SurfResampleMulti.c: In function ‘concat_many’:
CAT_SurfResampleMulti.c:190:9: warning: variable ‘idx_off’ set but not used [-Wunused-but-set-variable=]
  190 |     int idx_off = 0;
      |         ^~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAngularDistortion.o CAT_SurfAngularDistortion.c
CAT_SurfAngularDistortion.c: In function ‘main’:
CAT_SurfAngularDistortion.c:105:28: warning: unused variable ‘p’ [-Wunused-variable]
  105 |     int          i, tp[3], p, size, poly;
      |                            ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfValuesAverage.o CAT_SurfValuesAverage.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAverage.o CAT_SurfAverage.c
CAT_SurfAverage.c: In function ‘main’:
CAT_SurfAverage.c:41:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable=]
   41 |     Status       status;
      |                  ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfMetricDistortion.o CAT_SurfMetricDistortion.c
CAT_SurfMetricDistortion.c: In function ‘dijkstra_dist’:
CAT_SurfMetricDistortion.c:92:33: warning: ‘cur_p’ may be used uninitialized [-Wmaybe-uninitialized]
   92 |     for (n = 0; n < n_neighbours[cur_p]; n++) {
      |                                 ^
CAT_SurfMetricDistortion.c:56:21: note: ‘cur_p’ was declared here
   56 |     int i, n, nidx, cur_p;
      |                     ^~~~~
CAT_SurfMetricDistortion.c:60:24: warning: ‘setidx’ may be used uninitialized [-Wmaybe-uninitialized]
   60 |     int *set, setsize, setidx;
      |                        ^~~~~~
CAT_SurfMetricDistortion.c: In function ‘main’:
CAT_SurfMetricDistortion.c:280:28: warning: ‘visited’ may be used uninitialized [-Wmaybe-uninitialized]
  280 |                 visited[n] = 0;
      |                 ~~~~~~~~~~~^~~
CAT_SurfMetricDistortion.c:166:20: note: ‘visited’ was declared here
  166 |     unsigned char *visited, *pointset;
      |                    ^~~~~~~
CAT_SurfMetricDistortion.c:270:29: warning: ‘geo_dist’ may be used uninitialized [-Wmaybe-uninitialized]
  270 |                 geo_dist[n] = geo_dist2[n] = PINF;
      |                             ^
CAT_SurfMetricDistortion.c:167:13: note: ‘geo_dist’ was declared here
  167 |     double *geo_dist, *geo_dist2;
      |             ^~~~~~~~
CAT_SurfMetricDistortion.c:270:44: warning: ‘geo_dist2’ may be used uninitialized [-Wmaybe-uninitialized]
  270 |                 geo_dist[n] = geo_dist2[n] = PINF;
      |                                            ^
CAT_SurfMetricDistortion.c:167:24: note: ‘geo_dist2’ was declared here
  167 |     double *geo_dist, *geo_dist2;
      |                        ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfFixTopology.o CAT_SurfFixTopology.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfIsometize.o CAT_SurfIsometize.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothAreal.o CAT_SurfSmoothAreal.c
CAT_SurfSmoothAreal.c: In function ‘main’:
CAT_SurfSmoothAreal.c:23:18: warning: unused variable ‘poly’ [-Wunused-variable]
   23 |     int          poly, n_objects, n_iters;
      |                  ^~~~
CAT_SurfSmoothAreal.c:21:19: warning: unused variable ‘file’ [-Wunused-variable]
   21 |     FILE         *file;
      |                   ^~~~
CAT_SurfSmoothAreal.c:20:37: warning: unused variable ‘object2_filename’ [-Wunused-variable]
   20 |     STRING         object_filename, object2_filename, output_filename;
      |                                     ^~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSphericalDemon.o CAT_SurfSphericalDemon.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfWarp.o CAT_SurfWarp.c
In file included from ../Include/CAT_SurfWarpDartel.h:12,
                 from CAT_SurfWarp.c:20:
../3rdparty/dartel/dartel.h:85:12: warning: ‘neumann’ declared ‘static’ but never defined [-Wunused-function]
   85 | static int neumann(int i, int m);
      |            ^~~~~~~
../3rdparty/dartel/dartel.h:117:13: warning: ‘zeros’ declared ‘static’ but never defined [-Wunused-function]
  117 | static void zeros(int n, double *a);
      |             ^~~~~
../3rdparty/dartel/dartel.h:118:13: warning: ‘copy’ declared ‘static’ but never defined [-Wunused-function]
  118 | static void copy(int n, double *a, double *b);
      |             ^~~~
../3rdparty/dartel/dartel.h:119:13: warning: ‘addto’ declared ‘static’ but never defined [-Wunused-function]
  119 | static void addto(int n, double *a, double *b);
      |             ^~~~~
CAT_SurfWarp.c: In function ‘main’:
CAT_SurfWarp.c:349:17: warning: ‘rsrc’ may be used uninitialized [-Wmaybe-uninitialized]
  349 |             if (CAT_SurfWarpSolveDartelFlow(rsrc, rs_sph, rtrg, rt_sph, prm,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  350 |                                             dm, n_steps, rot, flow2, loop, &opt) != OK)
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfWarp.c:128:23: note: ‘rsrc’ was declared here
  128 |     polygons_struct  *rsrc, *rs_sph, *rtrg, *rt_sph;
      |                       ^~~~
CAT_SurfWarp.c:349:17: warning: ‘rs_sph’ may be used uninitialized [-Wmaybe-uninitialized]
  349 |             if (CAT_SurfWarpSolveDartelFlow(rsrc, rs_sph, rtrg, rt_sph, prm,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  350 |                                             dm, n_steps, rot, flow2, loop, &opt) != OK)
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfWarp.c:128:30: note: ‘rs_sph’ was declared here
  128 |     polygons_struct  *rsrc, *rs_sph, *rtrg, *rt_sph;
      |                              ^~~~~~
CAT_SurfWarp.c:349:17: warning: ‘rtrg’ may be used uninitialized [-Wmaybe-uninitialized]
  349 |             if (CAT_SurfWarpSolveDartelFlow(rsrc, rs_sph, rtrg, rt_sph, prm,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  350 |                                             dm, n_steps, rot, flow2, loop, &opt) != OK)
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfWarp.c:128:39: note: ‘rtrg’ was declared here
  128 |     polygons_struct  *rsrc, *rs_sph, *rtrg, *rt_sph;
      |                                       ^~~~
CAT_SurfWarp.c:349:17: warning: ‘rt_sph’ may be used uninitialized [-Wmaybe-uninitialized]
  349 |             if (CAT_SurfWarpSolveDartelFlow(rsrc, rs_sph, rtrg, rt_sph, prm,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  350 |                                             dm, n_steps, rot, flow2, loop, &opt) != OK)
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfWarp.c:128:46: note: ‘rt_sph’ was declared here
  128 |     polygons_struct  *rsrc, *rs_sph, *rtrg, *rt_sph;
      |                                              ^~~~~~
CAT_SurfWarp.c:360:13: warning: ‘as_sph’ may be used uninitialized [-Wmaybe-uninitialized]
  360 |             copy_polygons(as_sph, src_sphere);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfWarp.c:129:23: note: ‘as_sph’ was declared here
  129 |     polygons_struct  *as_sph;
      |                       ^~~~~~
CAT_SurfWarp.c:349:17: warning: ‘flow2’ may be used uninitialized [-Wmaybe-uninitialized]
  349 |             if (CAT_SurfWarpSolveDartelFlow(rsrc, rs_sph, rtrg, rt_sph, prm,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  350 |                                             dm, n_steps, rot, flow2, loop, &opt) != OK)
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfWarp.c:132:26: note: ‘flow2’ was declared here
  132 |     double       *flow, *flow2, *data;
      |                          ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothLaplacian.o CAT_SurfSmoothLaplacian.c
CAT_SurfSmoothLaplacian.c: In function ‘main’:
CAT_SurfSmoothLaplacian.c:54:34: warning: unused variable ‘polygons_orig’ [-Wunused-variable]
   54 |     polygons_struct  *polygons, *polygons_orig;
      |                                  ^~~~~~~~~~~~~
CAT_SurfSmoothLaplacian.c:51:19: warning: unused variable ‘p’ [-Wunused-variable]
   51 |     int        i, p, n_objects;
      |                   ^
CAT_SurfSmoothLaplacian.c:51:16: warning: unused variable ‘i’ [-Wunused-variable]
   51 |     int        i, p, n_objects;
      |                ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothConvexity.o CAT_SurfSmoothConvexity.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothSharpness.o CAT_SurfSmoothSharpness.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSharpness.o CAT_SurfSharpness.c
CAT_SurfSharpness.c: In function ‘main’:
CAT_SurfSharpness.c:29:19: warning: unused variable ‘fp’ [-Wunused-variable]
   29 |     FILE         *fp;
      |                   ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfHausdorff.o CAT_SurfHausdorff.c
CAT_SurfHausdorff.c: In function ‘main’:
CAT_SurfHausdorff.c:39:20: warning: variable ‘max_hd’ set but not used [-Wunused-but-set-variable=]
   39 |     double         max_hd = 0, *hd;
      |                    ^~~~~~
CAT_SurfHausdorff.c:36:18: warning: unused variable ‘i’ [-Wunused-variable]
   36 |     int          i;
      |                  ^
CAT_SurfHausdorff.c:33:19: warning: unused variable ‘fp’ [-Wunused-variable]
   33 |     FILE         *fp;
      |                   ^~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSelfIntersect.o CAT_SurfSelfIntersect.c
CAT_SurfSelfIntersect.c: In function ‘main’:
CAT_SurfSelfIntersect.c:43:11: warning: unused variable ‘fp’ [-Wunused-variable]
   43 |     FILE *fp;
      |           ^~
CAT_SurfSelfIntersect.c:42:21: warning: unused variable ‘progress’ [-Wunused-variable]
   42 |     progress_struct progress;
      |                     ^~~~~~~~
CAT_SurfSelfIntersect.c:41:10: warning: unused variable ‘str’ [-Wunused-variable]
   41 |     char str[80];
      |          ^~~
CAT_SurfSelfIntersect.c:40:34: warning: unused variable ‘i’ [-Wunused-variable]
   40 |     int n_objects, n_intersects, i;
      |                                  ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfFixSelfIntersect.o CAT_SurfFixSelfIntersect.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfArtifacts.o CAT_SurfArtifacts.c
CAT_SurfArtifacts.c: In function ‘main’:
CAT_SurfArtifacts.c:50:18: warning: unused variable ‘str’ [-Wunused-variable]
   50 |     char         str[80];
      |                  ^~~
CAT_SurfArtifacts.c:47:18: warning: unused variable ‘p’ [-Wunused-variable]
   47 |     int          p, n_objects, n_artifacts, *artifacts;
      |                  ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfMarkDefects.o CAT_SurfMarkDefects.c
CAT_SurfMarkDefects.c: In function ‘main’:
CAT_SurfMarkDefects.c:56:44: warning: variable ‘patch’ set but not used [-Wunused-but-set-variable=]
   56 |     polygons_struct    *surface, *sphere, *patch;
      |                                            ^~~~~
CAT_SurfMarkDefects.c:54:54: warning: unused variable ‘polydefects’ [-Wunused-variable]
   54 |     int          p, n_objects, n_defects, *defects, *polydefects;
      |                                                      ^~~~~~~~~~~
CAT_SurfMarkDefects.c:139:18: warning: ‘defect_size’ may be used uninitialized [-Wmaybe-uninitialized]
  139 |     if(get_size) free(defect_size);
      |                  ^~~~~~~~~~~~~~~~~
CAT_SurfMarkDefects.c:55:21: note: ‘defect_size’ was declared here
   55 |     double         *defect_size;
      |                     ^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfFractalDimension.o CAT_SurfFractalDimension.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfRefine.o CAT_SurfRefine.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfConvexity.o CAT_SurfConvexity.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
CAT_SurfConvexity.c: In function ‘main’:
CAT_SurfConvexity.c:22:18: warning: unused variable ‘poly’ [-Wunused-variable]
   22 |     int          poly, n_objects, **neighbours, *n_neighbours;
      |                  ^~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfAddValues.o CAT_SurfAddValues.c
CAT_SurfAddValues.c: In function ‘main’:
CAT_SurfAddValues.c:42:21: warning: unused variable ‘p’ [-Wunused-variable]
   42 |     int          i, p, n_objects, n_pts, n_values;
      |                     ^
CAT_SurfAddValues.c:42:18: warning: unused variable ‘i’ [-Wunused-variable]
   42 |     int          i, p, n_objects, n_pts, n_values;
      |                  ^
CAT_SurfAddValues.c:39:20: warning: unused variable ‘value’ [-Wunused-variable]
   39 |     double         value, *values;
      |                    ^~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfDepthPotential.o CAT_SurfDepthPotential.c
CAT_SurfDepthPotential.c: In function ‘main’:
CAT_SurfDepthPotential.c:28:9: warning: unused variable ‘poly’ [-Wunused-variable]
   28 |     int poly, n_objects;
      |         ^~~~
In file included from CAT_SurfDepthPotential.c:20:
../Include/CAT_DepthPotential.h: At top level:
../Include/CAT_DepthPotential.h:37:14: warning: ‘gauss_seidel’ declared ‘static’ but never defined [-Wunused-function]
   37 | private void gauss_seidel( int, int *, int *, double *, double *,
      |              ^~~~~~~~~~~~
../Include/CAT_DepthPotential.h:39:14: warning: ‘init_csr_matrix’ declared ‘static’ but never defined [-Wunused-function]
   39 | private void init_csr_matrix( int, int *, int **, struct csr_matrix * );
      |              ^~~~~~~~~~~~~~~
../Include/CAT_DepthPotential.h:40:14: warning: ‘free_csr_matrix’ declared ‘static’ but never defined [-Wunused-function]
   40 | private void free_csr_matrix( struct csr_matrix * );
      |              ^~~~~~~~~~~~~~~
../Include/CAT_DepthPotential.h:41:14: warning: ‘assemble’ declared ‘static’ but never defined [-Wunused-function]
   41 | private void assemble( double, int, int, struct csr_matrix * );
      |              ^~~~~~~~
../Include/CAT_DepthPotential.h:42:14: warning: ‘stable_normals’ declared ‘static’ but never defined [-Wunused-function]
   42 | private void stable_normals( int, Point [], Vector [], int *, int ** );
      |              ^~~~~~~~~~~~~~
../Include/CAT_DepthPotential.h:43:18: warning: ‘compute_mean_curvature’ declared ‘static’ but never defined [-Wunused-function]
   43 | private double * compute_mean_curvature( int, Point [], double *,
      |                  ^~~~~~~~~~~~~~~~~~~~~~
../Include/CAT_DepthPotential.h:45:14: warning: ‘cot_laplacian_operator’ declared ‘static’ but never defined [-Wunused-function]
   45 | private void cot_laplacian_operator( int, Point [], struct csr_matrix *,
      |              ^~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSulcusDepth.o CAT_SurfSulcusDepth.c
CAT_SurfSulcusDepth.c: In function ‘main’:
CAT_SurfSulcusDepth.c:46:18: warning: unused variable ‘points’ [-Wunused-variable]
   46 |     Point        points[MAX_POINTS_PER_POLYGON];
      |                  ^~~~~~
CAT_SurfSulcusDepth.c:44:36: warning: variable ‘sphere’ set but not used [-Wunused-but-set-variable=]
   44 |     polygons_struct    *polygons, *sphere;
      |                                    ^~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2ConvexHull.o CAT_Surf2ConvexHull.c
CAT_Surf2ConvexHull.c: In function ‘main’:
CAT_Surf2ConvexHull.c:37:43: warning: variable ‘convex’ set but not used [-Wunused-but-set-variable=]
   37 |     polygons_struct  *polygons, *sphere, *convex;
      |                                           ^~~~~~
CAT_Surf2ConvexHull.c:34:27: warning: unused variable ‘i’ [-Wunused-variable]
   34 |     int        n_objects, i;
      |                           ^
In file included from CAT_Surf2ConvexHull.c:18:
../Include/CAT_ConvexHull.h: At top level:
../Include/CAT_ConvexHull.h:40:15: warning: ‘get_points_of_region’ declared ‘static’ but never defined [-Wunused-function]
   40 | private  int  get_points_of_region(polygons_struct  *, Point ** );
      |               ^~~~~~~~~~~~~~~~~~~~
../Include/CAT_ConvexHull.h:41:16: warning: ‘get_convex_hull’ declared ‘static’ but never defined [-Wunused-function]
   41 | private  void  get_convex_hull(int, Point *, polygons_struct * );
      |                ^~~~~~~~~~~~~~~
../Include/CAT_ConvexHull.h:42:15: warning: ‘get_convex_hull_2d’ declared ‘static’ but never defined [-Wunused-function]
   42 | private  int  get_convex_hull_2d(int, float *, float *, int *, int, int );
      |               ^~~~~~~~~~~~~~~~~~
../Include/CAT_ConvexHull.h:43:13: warning: ‘get_surface_point_normals’ declared ‘static’ but never defined [-Wunused-function]
   43 | private int get_surface_point_normals( polygons_struct *, int *, Point *[],
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
../Include/CAT_ConvexHull.h:45:13: warning: ‘get_surface_neighbours’ declared ‘static’ but never defined [-Wunused-function]
   45 | private int get_surface_neighbours( polygons_struct *, int *[],
      |             ^~~~~~~~~~~~~~~~~~~~~~
../Include/CAT_ConvexHull.h:28:12: warning: ‘KeyFactor’ defined but not used [-Wunused-variable]
   28 | static int KeyFactor = 100000;
      |            ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfCentral2Pial.o CAT_SurfCentral2Pial.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
CAT_SurfCentral2Pial.c: In function ‘main’:
CAT_SurfCentral2Pial.c:59:18: warning: unused variable ‘nii_ptr’ [-Wunused-variable]
   59 |     nifti_image *nii_ptr;
      |                  ^~~~~~~
CAT_SurfCentral2Pial.c:54:19: warning: variable ‘surface_area’ set but not used [-Wunused-but-set-variable=]
   54 |     double value, surface_area, pos;
      |                   ^~~~~~~~~~~~
CAT_SurfCentral2Pial.c:54:12: warning: unused variable ‘value’ [-Wunused-variable]
   54 |     double value, surface_area, pos;
      |            ^~~~~
CAT_SurfCentral2Pial.c:142:19: warning: ‘status’ may be used uninitialized [-Wmaybe-uninitialized]
  142 |     return(status != OK);
      |           ~~~~~~~~^~~~~~
CAT_SurfCentral2Pial.c:56:12: note: ‘status’ was declared here
   56 |     Status status;
      |            ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfDistance.o CAT_SurfDistance.c
CAT_SurfDistance.c: In function ‘main’:
CAT_SurfDistance.c:65:11: warning: unused variable ‘fp’ [-Wunused-variable]
   65 |     FILE *fp;
      |           ^~
CAT_SurfDistance.c:62:19: warning: variable ‘max_distance’ set but not used [-Wunused-but-set-variable=]
   62 |     double shift, max_distance = 0;
      |                   ^~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSmoothDiffusion.o CAT_SurfSmoothDiffusion.c
CAT_SurfSmoothDiffusion.c: In function ‘main’:
CAT_SurfSmoothDiffusion.c:64:18: warning: unused variable ‘distance’ [-Wunused-variable]
   64 |     double       distance, *values, *mask;
      |                  ^~~~~~~~
CAT_SurfSmoothDiffusion.c:60:19: warning: unused variable ‘p’ [-Wunused-variable]
   60 |     int        i, p, n_objects, n_values, n_mask;
      |                   ^
CAT_SurfSmoothDiffusion.c:147:9: warning: ‘polygons_orig’ may be used uninitialized [-Wmaybe-uninitialized]
  147 |         free(polygons_orig);
      |         ^~~~~~~~~~~~~~~~~~~
CAT_SurfSmoothDiffusion.c:63:34: note: ‘polygons_orig’ was declared here
   63 |     polygons_struct  *polygons, *polygons_orig;
      |                                  ^~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolAmap.o CAT_VolAmap.c
CAT_VolAmap.c: In function ‘main’:
CAT_VolAmap.c:167:49: warning: unused variable ‘var’ [-Wunused-variable]
  167 |     double mean[n_classes], mu[n_pure_classes], var[n_pure_classes];
      |                                                 ^~~
CAT_VolAmap.c:167:29: warning: variable ‘mu’ set but not used [-Wunused-but-set-variable=]
  167 |     double mean[n_classes], mu[n_pure_classes], var[n_pure_classes];
      |                             ^~
CAT_VolAmap.c:166:19: warning: unused variable ‘val’ [-Wunused-variable]
  166 |     double slope, val, voxelsize[3];
      |                   ^~~
CAT_VolAmap.c:164:11: warning: unused variable ‘arg_string’ [-Wunused-variable]
  164 |     char *arg_string, buffer[1024];
      |           ^~~~~~~~~~
CAT_VolAmap.c:163:26: warning: unused variable ‘y_dims’ [-Wunused-variable]
  163 |     int x, y, z, z_area, y_dims;
      |                          ^~~~~~
CAT_VolAmap.c:163:18: warning: unused variable ‘z_area’ [-Wunused-variable]
  163 |     int x, y, z, z_area, y_dims;
      |                  ^~~~~~
CAT_VolAmap.c:163:15: warning: unused variable ‘z’ [-Wunused-variable]
  163 |     int x, y, z, z_area, y_dims;
      |               ^
CAT_VolAmap.c:163:12: warning: unused variable ‘y’ [-Wunused-variable]
  163 |     int x, y, z, z_area, y_dims;
      |            ^
CAT_VolAmap.c:163:9: warning: unused variable ‘x’ [-Wunused-variable]
  163 |     int x, y, z, z_area, y_dims;
      |         ^
CAT_VolAmap.c:167:5: warning: ‘n_classes’ is used uninitialized [-Wuninitialized]
  167 |     double mean[n_classes], mu[n_pure_classes], var[n_pure_classes];
      |     ^~~~~~
CAT_VolAmap.c:160:9: note: ‘n_classes’ was declared here
  160 |     int n_classes;
      |         ^~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolSmooth.o CAT_VolSmooth.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_GlmEstimate.o CAT_GlmEstimate.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolAverage.o CAT_VolAverage.c
CAT_VolAverage.c: In function ‘main’:
CAT_VolAverage.c:157:27: warning: ‘zscore’ may be used uninitialized [-Wmaybe-uninitialized]
  157 |                 zscore[i] = 0.0;
      |                 ~~~~~~~~~~^~~~~
CAT_VolAverage.c:44:55: note: ‘zscore’ was declared here
   44 |     double *avg, *sum_squares, *input, voxelsize[3], *zscore;
      |                                                       ^~~~~~
CAT_VolAverage.c:120:28: warning: ‘sum_squares’ may be used uninitialized [-Wmaybe-uninitialized]
  120 |                 sum_squares[j] += input[j]*input[j];
      |                 ~~~~~~~~~~~^~~
CAT_VolAverage.c:44:19: note: ‘sum_squares’ was declared here
   44 |     double *avg, *sum_squares, *input, voxelsize[3], *zscore;
      |                   ^~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolSanlm.o CAT_VolSanlm.c
CAT_VolSanlm.c: In function ‘main’:
CAT_VolSanlm.c:73:12: warning: unused variable ‘j’ [-Wunused-variable]
   73 |     int i, j, dims[3];
      |            ^
CAT_VolSanlm.c:73:9: warning: unused variable ‘i’ [-Wunused-variable]
   73 |     int i, j, dims[3];
      |         ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolOrnlm.o CAT_VolOrnlm.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolLocalStat.o CAT_VolLocalStat.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolThicknessPbt.o CAT_VolThicknessPbt.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolSheetness.o CAT_VolSheetness.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolCalc.o CAT_VolCalc.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_VolLayerSmooth.o CAT_VolLayerSmooth.c
CAT_VolLayerSmooth.c: In function ‘main’:
CAT_VolLayerSmooth.c:191:61: warning: ‘depth_’ directive output may be truncated writing 6 bytes into a region of size between 1 and 1024 [-Wformat-truncation=]
  191 |         snprintf(debug_filename, sizeof(debug_filename), "%sdepth_%s", dir_part, base);
      |                                                             ^~~~~~
In file included from /usr/include/stdio.h:974,
                 from ../3rdparty/volume_io/Include/volume_io/basic.h:34,
                 from ../3rdparty/volume_io/Include/volume_io.h:40,
                 from ../3rdparty/bicpl-surface/Include/bicpl/objects.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl/data_structures.h:19,
                 from ../3rdparty/bicpl-surface/Include/bicpl.h:33,
                 from CAT_VolLayerSmooth.c:18:
In function ‘snprintf’,
    inlined from ‘main’ at CAT_VolLayerSmooth.c:191:9:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output 7 or more bytes (assuming 1030) into a destination of size 1024
   68 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   70 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
CAT_VolLayerSmooth.c: In function ‘main’:
CAT_VolLayerSmooth.c:198:61: warning: ‘distWM_’ directive output may be truncated writing 7 bytes into a region of size between 1 and 1024 [-Wformat-truncation=]
  198 |         snprintf(debug_filename, sizeof(debug_filename), "%sdistWM_%s", dir_part, base);
      |                                                             ^~~~~~~
In function ‘snprintf’,
    inlined from ‘main’ at CAT_VolLayerSmooth.c:198:9:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output 8 or more bytes (assuming 1031) into a destination of size 1024
   68 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   70 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
CAT_VolLayerSmooth.c: In function ‘main’:
CAT_VolLayerSmooth.c:205:61: warning: ‘distCSF_’ directive output may be truncated writing 8 bytes into a region of size between 1 and 1024 [-Wformat-truncation=]
  205 |         snprintf(debug_filename, sizeof(debug_filename), "%sdistCSF_%s", dir_part, base);
      |                                                             ^~~~~~~~
In function ‘snprintf’,
    inlined from ‘main’ at CAT_VolLayerSmooth.c:205:9:
/usr/include/bits/stdio2.h:68:10: note: ‘__snprintf_chk’ output 9 or more bytes (assuming 1032) into a destination of size 1024
   68 |   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |                                    __glibc_objsize (__s), __fmt,
      |                                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   70 |                                    __va_arg_pack ());
      |                                    ~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2SPH.o CAT_Surf2SPH.c
CAT_Surf2SPH.c: In function ‘main’:
CAT_Surf2SPH.c:41:29: warning: unused variable ‘n_dims’ [-Wunused-variable]
   41 |     int          n_objects, n_dims = 3;
      |                             ^~~~~~
CAT_Surf2SPH.c:37:18: warning: unused variable ‘n_items’ [-Wunused-variable]
   37 |     int          n_items, bandwidth, bandwidth2;
      |                  ^~~~~~~
CAT_Surf2SPH.c:36:24: warning: unused variable ‘k’ [-Wunused-variable]
   36 |     int          i, j, k;
      |                        ^
CAT_Surf2SPH.c:36:21: warning: unused variable ‘j’ [-Wunused-variable]
   36 |     int          i, j, k;
      |                     ^
CAT_Surf2SPH.c:36:18: warning: unused variable ‘i’ [-Wunused-variable]
   36 |     int          i, j, k;
      |                  ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfResampleSphericalSPH.o CAT_SurfResampleSphericalSPH.c
CAT_SurfResampleSphericalSPH.c: In function ‘main’:
CAT_SurfResampleSphericalSPH.c:57:23: warning: unused variable ‘value’ [-Wunused-variable]
   57 |     double         r, value;
      |                       ^~~~~
CAT_SurfResampleSphericalSPH.c:57:20: warning: unused variable ‘r’ [-Wunused-variable]
   57 |     double         r, value;
      |                    ^
CAT_SurfResampleSphericalSPH.c:54:21: warning: unused variable ‘j’ [-Wunused-variable]
   54 |     int          i, j, bandwidth2, n_objects;
      |                     ^
CAT_SurfResampleSphericalSPH.c:54:18: warning: unused variable ‘i’ [-Wunused-variable]
   54 |     int          i, j, bandwidth2, n_objects;
      |                  ^
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfDeform.o CAT_SurfDeform.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfCorrectThicknessFolding.o CAT_SurfCorrectThicknessFolding.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2PialWhite.o CAT_Surf2PialWhite.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfReduce.o CAT_SurfReduce.c
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfSPH2Surf.o CAT_SurfSPH2Surf.c
CAT_SurfSPH2Surf.c: In function ‘main’:
CAT_SurfSPH2Surf.c:86:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   86 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:91:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   91 |     fgets(line, 256, fp);
      |     ^~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:113:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  113 |         fgets(line, 256, fp);
      |         ^~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:164:9: warning: ‘polygons_full’ may be used uninitialized [-Wmaybe-uninitialized]
  164 |         correct_bounds_to_target_with_scaling(polygons_bw, polygons_full);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
CAT_SurfSPH2Surf.c:65:39: note: ‘polygons_full’ was declared here
   65 |     polygons_struct    *polygons_bw, *polygons_full;
      |                                       ^~~~~~~~~~~~~
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_Surf2ROIMulti.o CAT_Surf2ROIMulti.c
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gcc -DHAVE_CONFIG_H -I. -I..  -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -I/usr/include/nifti -I/usr/include/gifti -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o CAT_SurfBBReg.o CAT_SurfBBReg.c
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSheet2Surf CAT_SurfSheet2Surf.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSheet2Surf CAT_SurfSheet2Surf.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfCurvature CAT_SurfCurvature.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfCurvature CAT_SurfCurvature.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2Sheet CAT_Surf2Sheet.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2Sheet CAT_Surf2Sheet.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Vol2Surf CAT_Vol2Surf.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Vol2Surf CAT_Vol2Surf.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfApplyWarp CAT_SurfApplyWarp.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfApplyWarp CAT_SurfApplyWarp.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfApplyWarpValues CAT_SurfApplyWarpValues.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfApplyWarpValues CAT_SurfApplyWarpValues.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfArea CAT_SurfArea.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfArea CAT_SurfArea.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfInfo CAT_SurfInfo.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfInfo CAT_SurfInfo.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfPlotValuesAtMaximum CAT_SurfPlotValuesAtMaximum.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfPlotValuesAtMaximum CAT_SurfPlotValuesAtMaximum.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfMeasure2Txt CAT_SurfMeasure2Txt.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfMeasure2Txt CAT_SurfMeasure2Txt.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfRatio CAT_SurfRatio.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfRatio CAT_SurfRatio.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfPlotValuesAtPoint CAT_SurfPlotValuesAtPoint.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfPlotValuesAtPoint CAT_SurfPlotValuesAtPoint.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmooth CAT_SurfSmooth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmooth CAT_SurfSmooth.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfConvert CAT_SurfConvert.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfConvert CAT_SurfConvert.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSeparateClusters CAT_SurfSeparateClusters.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSeparateClusters CAT_SurfSeparateClusters.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2Sphere CAT_Surf2Sphere.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2Sphere CAT_Surf2Sphere.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSeparatePolygons CAT_SurfSeparatePolygons.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSeparatePolygons CAT_SurfSeparatePolygons.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAreaDistortion CAT_SurfAreaDistortion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAreaDistortion CAT_SurfAreaDistortion.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResampleSpherical CAT_SurfResampleSpherical.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResampleSpherical CAT_SurfResampleSpherical.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResample CAT_SurfResample.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResample CAT_SurfResample.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResampleMulti CAT_SurfResampleMulti.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResampleMulti CAT_SurfResampleMulti.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAngularDistortion CAT_SurfAngularDistortion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAngularDistortion CAT_SurfAngularDistortion.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfValuesAverage CAT_SurfValuesAverage.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfValuesAverage CAT_SurfValuesAverage.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfMetricDistortion CAT_SurfMetricDistortion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfMetricDistortion CAT_SurfMetricDistortion.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAverage CAT_SurfAverage.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAverage CAT_SurfAverage.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfFixTopology CAT_SurfFixTopology.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfFixTopology CAT_SurfFixTopology.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfIsometize CAT_SurfIsometize.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfIsometize CAT_SurfIsometize.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfWarp CAT_SurfWarp.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfWarp CAT_SurfWarp.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothAreal CAT_SurfSmoothAreal.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothAreal CAT_SurfSmoothAreal.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSphericalDemon CAT_SurfSphericalDemon.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSphericalDemon CAT_SurfSphericalDemon.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothLaplacian CAT_SurfSmoothLaplacian.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothLaplacian CAT_SurfSmoothLaplacian.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothConvexity CAT_SurfSmoothConvexity.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothConvexity CAT_SurfSmoothConvexity.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothSharpness CAT_SurfSmoothSharpness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothSharpness CAT_SurfSmoothSharpness.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfHausdorff CAT_SurfHausdorff.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfHausdorff CAT_SurfHausdorff.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSharpness CAT_SurfSharpness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSharpness CAT_SurfSharpness.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSelfIntersect CAT_SurfSelfIntersect.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSelfIntersect CAT_SurfSelfIntersect.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfFixSelfIntersect CAT_SurfFixSelfIntersect.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfFixSelfIntersect CAT_SurfFixSelfIntersect.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfArtifacts CAT_SurfArtifacts.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfArtifacts CAT_SurfArtifacts.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfMarkDefects CAT_SurfMarkDefects.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfMarkDefects CAT_SurfMarkDefects.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfFractalDimension CAT_SurfFractalDimension.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfFractalDimension CAT_SurfFractalDimension.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfConvexity CAT_SurfConvexity.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfConvexity CAT_SurfConvexity.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfRefine CAT_SurfRefine.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfRefine CAT_SurfRefine.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfAddValues CAT_SurfAddValues.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfAddValues CAT_SurfAddValues.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSulcusDepth CAT_SurfSulcusDepth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSulcusDepth CAT_SurfSulcusDepth.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfDepthPotential CAT_SurfDepthPotential.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfDepthPotential CAT_SurfDepthPotential.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfCentral2Pial CAT_SurfCentral2Pial.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfCentral2Pial CAT_SurfCentral2Pial.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2ConvexHull CAT_Surf2ConvexHull.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2ConvexHull CAT_Surf2ConvexHull.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfDistance CAT_SurfDistance.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfDistance CAT_SurfDistance.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolAverage CAT_VolAverage.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolAverage CAT_VolAverage.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSmoothDiffusion CAT_SurfSmoothDiffusion.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSmoothDiffusion CAT_SurfSmoothDiffusion.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolSmooth CAT_VolSmooth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolSmooth CAT_VolSmooth.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolAmap CAT_VolAmap.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolAmap CAT_VolAmap.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolSanlm CAT_VolSanlm.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolSanlm CAT_VolSanlm.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_GlmEstimate CAT_GlmEstimate.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_GlmEstimate CAT_GlmEstimate.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolOrnlm CAT_VolOrnlm.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolOrnlm CAT_VolOrnlm.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolCalc CAT_VolCalc.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolLocalStat CAT_VolLocalStat.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolLocalStat CAT_VolLocalStat.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolSheetness CAT_VolSheetness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolSheetness CAT_VolSheetness.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolLayerSmooth CAT_VolLayerSmooth.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolLayerSmooth CAT_VolLayerSmooth.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_VolThicknessPbt CAT_VolThicknessPbt.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_VolThicknessPbt CAT_VolThicknessPbt.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfResampleSphericalSPH CAT_SurfResampleSphericalSPH.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfResampleSphericalSPH CAT_SurfResampleSphericalSPH.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2SPH CAT_Surf2SPH.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2SPH CAT_Surf2SPH.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfDeform CAT_SurfDeform.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfDeform CAT_SurfDeform.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfReduce CAT_SurfReduce.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfReduce CAT_SurfReduce.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2PialWhite CAT_Surf2PialWhite.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2PialWhite CAT_Surf2PialWhite.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfCorrectThicknessFolding CAT_SurfCorrectThicknessFolding.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfCorrectThicknessFolding CAT_SurfCorrectThicknessFolding.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
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/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_Surf2ROIMulti CAT_Surf2ROIMulti.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_Surf2ROIMulti CAT_Surf2ROIMulti.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfSPH2Surf CAT_SurfSPH2Surf.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfSPH2Surf CAT_SurfSPH2Surf.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
/bin/sh ../libtool  --tag=CC   --mode=link gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o CAT_SurfBBReg CAT_SurfBBReg.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -DHAVE_ZLIB -I../Include -I../3rdparty/dartel -I../3rdparty/genus0 -I../3rdparty/nifti -I../3rdparty/nifti -I../3rdparty/s2kit10 -I../3rdparty/gifticlib -I../3rdparty/expat/lib -I../3rdparty/zlib -I../3rdparty/volume_io/Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/nii2mesh -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o CAT_SurfBBReg CAT_SurfBBReg.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
Making all in tests
make[2]: Nothing to be done for 'all'.
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.YA49z8
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ '[' /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT
++ dirname /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/cat-surface-1.0.28-build
+ mkdir /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd CAT-Surface-1.0.28
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
Making install in .
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
 /usr/bin/mkdir -p '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64'
 /bin/sh ./libtool   --mode=install /usr/bin/install -p   libCAT.la '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64'
libtool: install: /usr/bin/install -p .libs/libCAT.lai /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64/libCAT.la
libtool: install: /usr/bin/install -p .libs/libCAT.a /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64/libCAT.a
libtool: install: chmod 644 /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64/libCAT.a
libtool: install: ranlib /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64/libCAT.a
libtool: warning: remember to run 'libtool --finish /usr/lib64'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Making install in Progs
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
 /usr/bin/mkdir -p '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -p CAT_Surf2Sheet CAT_SurfSheet2Surf CAT_Vol2Surf CAT_SurfCurvature CAT_SurfApplyWarp CAT_SurfApplyWarpValues CAT_SurfArea CAT_SurfInfo CAT_SurfRatio CAT_SurfSmooth CAT_SurfPlotValuesAtPoint CAT_SurfPlotValuesAtMaximum CAT_SurfMeasure2Txt CAT_SurfConvert CAT_Surf2Sphere CAT_SurfSeparateClusters CAT_SurfSeparatePolygons CAT_SurfResampleSpherical CAT_SurfResample CAT_SurfResampleMulti CAT_SurfAreaDistortion CAT_SurfAngularDistortion CAT_SurfMetricDistortion CAT_SurfAverage CAT_SurfValuesAverage CAT_SurfFixTopology CAT_SurfIsometize CAT_SurfWarp CAT_SurfSphericalDemon CAT_SurfSmoothAreal CAT_SurfSmoothLaplacian CAT_SurfSmoothConvexity CAT_SurfSmoothSharpness CAT_SurfHausdorff CAT_SurfSharpness CAT_SurfSelfIntersect CAT_SurfFixSelfIntersect CAT_SurfMarkDefects CAT_SurfArtifacts CAT_SurfFractalDimension CAT_SurfRefine CAT_SurfConvexity CAT_SurfAddValues CAT_SurfSulcusDepth CAT_SurfDepthPotential CAT_SurfCentral2Pial CAT_Surf2ConvexHull CAT_SurfDistance CAT_GlmEstimate CAT_SurfSmoothDiffusion CAT_VolAmap CAT_VolAverage CAT_VolSmooth CAT_VolSanlm CAT_VolOrnlm CAT_VolLocalStat CAT_VolThicknessPbt CAT_VolSheetness CAT_VolCalc CAT_VolLayerSmooth CAT_SurfResampleSphericalSPH CAT_Surf2SPH CAT_SurfDeform CAT_Surf2PialWhite CAT_SurfCorrectThicknessFolding CAT_SurfReduce CAT_Surf2ROIMulti CAT_SurfSPH2Surf CAT_SurfBBReg '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin'
libtool: install: /usr/bin/install -p CAT_Surf2Sheet /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Surf2Sheet
libtool: install: /usr/bin/install -p CAT_SurfSheet2Surf /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSheet2Surf
libtool: install: /usr/bin/install -p CAT_Vol2Surf /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Vol2Surf
libtool: install: /usr/bin/install -p CAT_SurfCurvature /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfCurvature
libtool: install: /usr/bin/install -p CAT_SurfApplyWarp /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfApplyWarp
libtool: install: /usr/bin/install -p CAT_SurfApplyWarpValues /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfApplyWarpValues
libtool: install: /usr/bin/install -p CAT_SurfArea /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfArea
libtool: install: /usr/bin/install -p CAT_SurfInfo /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfInfo
libtool: install: /usr/bin/install -p CAT_SurfRatio /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfRatio
libtool: install: /usr/bin/install -p CAT_SurfSmooth /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSmooth
libtool: install: /usr/bin/install -p CAT_SurfPlotValuesAtPoint /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfPlotValuesAtPoint
libtool: install: /usr/bin/install -p CAT_SurfPlotValuesAtMaximum /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfPlotValuesAtMaximum
libtool: install: /usr/bin/install -p CAT_SurfMeasure2Txt /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfMeasure2Txt
libtool: install: /usr/bin/install -p CAT_SurfConvert /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfConvert
libtool: install: /usr/bin/install -p CAT_Surf2Sphere /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Surf2Sphere
libtool: install: /usr/bin/install -p CAT_SurfSeparateClusters /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSeparateClusters
libtool: install: /usr/bin/install -p CAT_SurfSeparatePolygons /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSeparatePolygons
libtool: install: /usr/bin/install -p CAT_SurfResampleSpherical /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfResampleSpherical
libtool: install: /usr/bin/install -p CAT_SurfResample /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfResample
libtool: install: /usr/bin/install -p CAT_SurfResampleMulti /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfResampleMulti
libtool: install: /usr/bin/install -p CAT_SurfAreaDistortion /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfAreaDistortion
libtool: install: /usr/bin/install -p CAT_SurfAngularDistortion /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfAngularDistortion
libtool: install: /usr/bin/install -p CAT_SurfMetricDistortion /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfMetricDistortion
libtool: install: /usr/bin/install -p CAT_SurfAverage /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfAverage
libtool: install: /usr/bin/install -p CAT_SurfValuesAverage /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfValuesAverage
libtool: install: /usr/bin/install -p CAT_SurfFixTopology /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfFixTopology
libtool: install: /usr/bin/install -p CAT_SurfIsometize /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfIsometize
libtool: install: /usr/bin/install -p CAT_SurfWarp /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfWarp
libtool: install: /usr/bin/install -p CAT_SurfSphericalDemon /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSphericalDemon
libtool: install: /usr/bin/install -p CAT_SurfSmoothAreal /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSmoothAreal
libtool: install: /usr/bin/install -p CAT_SurfSmoothLaplacian /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSmoothLaplacian
libtool: install: /usr/bin/install -p CAT_SurfSmoothConvexity /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSmoothConvexity
libtool: install: /usr/bin/install -p CAT_SurfSmoothSharpness /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSmoothSharpness
libtool: install: /usr/bin/install -p CAT_SurfHausdorff /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfHausdorff
libtool: install: /usr/bin/install -p CAT_SurfSharpness /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSharpness
libtool: install: /usr/bin/install -p CAT_SurfSelfIntersect /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSelfIntersect
libtool: install: /usr/bin/install -p CAT_SurfFixSelfIntersect /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfFixSelfIntersect
libtool: install: /usr/bin/install -p CAT_SurfMarkDefects /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfMarkDefects
libtool: install: /usr/bin/install -p CAT_SurfArtifacts /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfArtifacts
libtool: install: /usr/bin/install -p CAT_SurfFractalDimension /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfFractalDimension
libtool: install: /usr/bin/install -p CAT_SurfRefine /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfRefine
libtool: install: /usr/bin/install -p CAT_SurfConvexity /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfConvexity
libtool: install: /usr/bin/install -p CAT_SurfAddValues /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfAddValues
libtool: install: /usr/bin/install -p CAT_SurfSulcusDepth /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSulcusDepth
libtool: install: /usr/bin/install -p CAT_SurfDepthPotential /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfDepthPotential
libtool: install: /usr/bin/install -p CAT_SurfCentral2Pial /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfCentral2Pial
libtool: install: /usr/bin/install -p CAT_Surf2ConvexHull /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Surf2ConvexHull
libtool: install: /usr/bin/install -p CAT_SurfDistance /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfDistance
libtool: install: /usr/bin/install -p CAT_GlmEstimate /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_GlmEstimate
libtool: install: /usr/bin/install -p CAT_SurfSmoothDiffusion /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSmoothDiffusion
libtool: install: /usr/bin/install -p CAT_VolAmap /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolAmap
libtool: install: /usr/bin/install -p CAT_VolAverage /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolAverage
libtool: install: /usr/bin/install -p CAT_VolSmooth /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolSmooth
libtool: install: /usr/bin/install -p CAT_VolSanlm /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolSanlm
libtool: install: /usr/bin/install -p CAT_VolOrnlm /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolOrnlm
libtool: install: /usr/bin/install -p CAT_VolLocalStat /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolLocalStat
libtool: install: /usr/bin/install -p CAT_VolThicknessPbt /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolThicknessPbt
libtool: install: /usr/bin/install -p CAT_VolSheetness /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolSheetness
libtool: install: /usr/bin/install -p CAT_VolCalc /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolCalc
libtool: install: /usr/bin/install -p CAT_VolLayerSmooth /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_VolLayerSmooth
libtool: install: /usr/bin/install -p CAT_SurfResampleSphericalSPH /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfResampleSphericalSPH
libtool: install: /usr/bin/install -p CAT_Surf2SPH /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Surf2SPH
libtool: install: /usr/bin/install -p CAT_SurfDeform /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfDeform
libtool: install: /usr/bin/install -p CAT_Surf2PialWhite /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Surf2PialWhite
libtool: install: /usr/bin/install -p CAT_SurfCorrectThicknessFolding /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfCorrectThicknessFolding
libtool: install: /usr/bin/install -p CAT_SurfReduce /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfReduce
libtool: install: /usr/bin/install -p CAT_Surf2ROIMulti /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_Surf2ROIMulti
libtool: install: /usr/bin/install -p CAT_SurfSPH2Surf /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfSPH2Surf
libtool: install: /usr/bin/install -p CAT_SurfBBReg /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_SurfBBReg
 /usr/bin/mkdir -p '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin'
 /usr/bin/install -p CAT_ResampleFS_ui CAT_Resample_ui '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
Making install in tests
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
+ ln -s CAT_SurfWarp /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/bin/CAT_WarpSurf
+ rm -f /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64/libCAT.a /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/lib64/libCAT.la
+ rm -rf '/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/include/CAT*'
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.0.28-1.fc46 --unique-debug-suffix -1.0.28-1.fc46.aarch64 --unique-debug-src-base cat-surface-1.0.28-1.fc46.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28
find-debuginfo: starting
Extracting debug info from 69 files
DWARF-compressing 69 files
sepdebugcrcfix: Updated 69 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/cat-surface-1.0.28-1.fc46.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/cat-surface-1.0.28-1.fc46.aarch64/3rdparty/bicpl-surface/Geometry/tetrahedrons.c is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/cat-surface-1.0.28-1.fc46.aarch64/3rdparty/bicpl-surface/Geometry/platonics.c is executable but has no shebang, removing executable bit
mangling shebang in /usr/bin/CAT_Resample_ui from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/CAT_ResampleFS_ui from /bin/sh to #!/usr/bin/sh
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j4 /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT
Scanned 34 directories and 459 files,
    processed 0 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr
Scanned 33 directories and 459 files,
    considered 458 files, read 22 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/cat-surface-1.0.28-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.EqRsah
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd CAT-Surface-1.0.28
+ make check
Making check in .
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28'
Making check in Progs
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/Progs'
Making check in tests
make[1]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make  test_math test_glmformula test_sheetness test_calc test_surfinfo test_pialprofile test_deform test_folding test_intersect
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_math.o test_math.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_math test_math.o -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_math test_math.o  -Wl,--as-needed -lm -lgiftiio -lniftiio -lznz
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_glmformula.o test_glmformula.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_glmformula test_glmformula.o -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_glmformula test_glmformula.o  -Wl,--as-needed -lm -lgiftiio -lniftiio -lznz
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_sheetness.o test_sheetness.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_sheetness test_sheetness.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_sheetness test_sheetness.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_calc.o test_calc.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_calc test_calc.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_calc test_calc.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_surfinfo.o test_surfinfo.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_surfinfo test_surfinfo.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_surfinfo test_surfinfo.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_pialprofile.o test_pialprofile.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_pialprofile test_pialprofile.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_pialprofile test_pialprofile.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_deform.o test_deform.c
test_deform.c: In function ‘test_deform_orientation_invariant’:
test_deform.c:40:14: warning: unused variable ‘i’ [-Wunused-variable]
   40 |     int sgn, i, n_points = 0;
      |              ^
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_deform test_deform.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_deform test_deform.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_folding.o test_folding.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_folding test_folding.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_folding test_folding.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
gcc -DHAVE_CONFIG_H -I. -I..  -I../Include -I../3rdparty/bicpl-surface/Include -I../3rdparty/bicpl-surface/Include/bicpl -I../3rdparty/volume_io/Include -I../3rdparty/gifticlib -I../3rdparty/nii2mesh -I../3rdparty/nifti -I/usr/include/nifti -I/usr/include/gifti  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o test_intersect.o test_intersect.c
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o test_intersect test_intersect.o ../libCAT.la -lm -lgiftiio -lniftiio -lznz 
libtool: link: gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z -Wl,relro -Wl,-z -Wl,pack-relative-relocs -Wl,-z -Wl,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o test_intersect test_intersect.o  -Wl,--as-needed ../.libs/libCAT.a -lfftw3 -lm -lgiftiio -lniftiio -lznz -pthread
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make  check-TESTS
make[2]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make[3]: Entering directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
PASS: test_math
PASS: test_glmformula
PASS: test_sheetness
PASS: test_calc
PASS: test_surfinfo
PASS: test_pialprofile
PASS: test_deform
PASS: test_folding
PASS: test_intersect
============================================================================
Testsuite summary for Cortex Analysis Tools 1.0
============================================================================
# TOTAL: 9
# PASS:  9
# SKIP:  0
# XFAIL: 0
# FAIL:  0
# XPASS: 0
# ERROR: 0
============================================================================
make[3]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make[2]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
make[1]: Leaving directory '/builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/tests'
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: cat-surface-1.0.28-1.fc46.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.T6lwmd
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ cd CAT-Surface-1.0.28
+ DOCDIR=/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/doc/cat-surface
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/doc/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/README.md /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/doc/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/AUTHORS /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/doc/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/ChangeLog /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/doc/cat-surface
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5Lxtqy
+ umask 022
+ cd /builddir/build/BUILD/cat-surface-1.0.28-build
+ cd CAT-Surface-1.0.28
+ LICENSEDIR=/builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/licenses/cat-surface
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/licenses/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/LICENSE /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/licenses/cat-surface
+ cp -pr /builddir/build/BUILD/cat-surface-1.0.28-build/CAT-Surface-1.0.28/COPYING /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT/usr/share/licenses/cat-surface
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(bicpl) = 1.4.6 bundled(dartel) bundled(nii2mesh) bundled(s2kit) = 1.0 bundled(volume_io) = 1.5.1 cat-surface = 1:1.0.28-1.fc46 cat-surface(aarch-64) = 1:1.0.28-1.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfftw3.so.3()(64bit) libgiftiio.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libniftiio.so.2()(64bit) rtld(GNU_HASH)
Processing files: cat-surface-debugsource-1.0.28-1.fc46.aarch64
Provides: cat-surface-debugsource = 1:1.0.28-1.fc46 cat-surface-debugsource(aarch-64) = 1:1.0.28-1.fc46
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: cat-surface-debuginfo-1.0.28-1.fc46.aarch64
Provides: cat-surface-debuginfo = 1:1.0.28-1.fc46 cat-surface-debuginfo(aarch-64) = 1:1.0.28-1.fc46 debuginfo(build-id) = 01afa52b172292b839a99f2dfb9e7fb005e4e818 debuginfo(build-id) = 027588d5445a13f0272e522230b0c873396ae81e debuginfo(build-id) = 05fc5a7120648e1baeb913881409e67c8a7e3b43 debuginfo(build-id) = 06c2af318f03e725814f21ec5143ed0e06f1f04f debuginfo(build-id) = 0e62724ff10753cc5fa0efa85c4b7137fad0fba5 debuginfo(build-id) = 114c183507f80c6791ad00f8f82cd34b9e37a91d debuginfo(build-id) = 11c32f6cdc5530459f692a44ecc1edc7cec05795 debuginfo(build-id) = 145da6cc165e033c9fb11b820fd995737387e61a debuginfo(build-id) = 175f16ff5cb40556bb4f31e827c84f0f37a4be15 debuginfo(build-id) = 1836556b49565ee762bc192a8f5a68a37d9b0731 debuginfo(build-id) = 29aaf35ae0bbbdb13b203d48d8e1245281811e7b debuginfo(build-id) = 2b42d3f7e8189c149bdc6eada21c88d80e9e2411 debuginfo(build-id) = 2d15193b0d06db2a9b7067f68cb8351268dff489 debuginfo(build-id) = 330fabee14f8e72aed3ee25da5c5722a4cb35ba4 debuginfo(build-id) = 37aac8dd75de44baec8e5ac0236d08d6b527eb44 debuginfo(build-id) = 389a81c81e8e65e43f075dbc3e9f02e851bad32e debuginfo(build-id) = 38c95ea351aa2a3acb5b0b7c2b3f3b7cfcc1edb5 debuginfo(build-id) = 3b207862482701901ce57667e6406e6612d01bc3 debuginfo(build-id) = 3e975308a09572863483d0b8c4872e82666ff234 debuginfo(build-id) = 3f26f62fc260898f4cfd1a20815fb7184920d523 debuginfo(build-id) = 42301c11637b2e4a7e96e244f133c74089e813c9 debuginfo(build-id) = 44782cbcf0acf7f62b8aba4286abea815a4d8f15 debuginfo(build-id) = 467dd12be8243ea673dda7b6c7374b79b89f53c8 debuginfo(build-id) = 4986922ada009c8814a4d800edc8f8bda74d586b debuginfo(build-id) = 4aa1c62c6ca721ab2ab3a9927f2a55dfb9c3f6ee debuginfo(build-id) = 4c7ef9ef1146f3a5a0f029e1d22af88057636368 debuginfo(build-id) = 4d435ce78ea33c9ced3412c420b2847c308d67de debuginfo(build-id) = 576b498eebadcc07fec6b52ff4d2afb15519ed3b debuginfo(build-id) = 5add89c0cbfb3a20dcfc43135e795544babb0310 debuginfo(build-id) = 5d904132d0cd9cd555101cf3eae949c14c11b57c debuginfo(build-id) = 65211cb0ea5e24113203e375c4e617a7990b2133 debuginfo(build-id) = 6acba09ce7927de6b4840e6f53ce21726238938f debuginfo(build-id) = 6b034c373d992feba1487673a1740697037540b7 debuginfo(build-id) = 6c291708c4ef71da5d900227f717519dd9432c38 debuginfo(build-id) = 6cc3fe00d0a2cb52a9de23257c0a7c831b96eec7 debuginfo(build-id) = 70d7298240668b04efc6474b3e41fb101db4d254 debuginfo(build-id) = 760977774887be7b10f2f87f9a0ba7d0d2ead64b debuginfo(build-id) = 784604992b4c91ec14bbc8be026d44cfb62334bc debuginfo(build-id) = 7a55a0ae5cbe75c38efe9a02c0e30bfba4401c7e debuginfo(build-id) = 8214cff4e210d1ad13d86ebd9571fb293091e536 debuginfo(build-id) = 8a9ec58488af8314e37c065a37b2c74eb0dc9f21 debuginfo(build-id) = 8c719773bfa504214cbe03480172da14234a19ef debuginfo(build-id) = 97dee09d0ef1162f47215c1433c2e681a3e935ba debuginfo(build-id) = a30f832e3808e47b667a2c6907c7a1d961d525ac debuginfo(build-id) = ac14df2bb508b07ea5b9e36ee8b18b1485198e22 debuginfo(build-id) = adc62ad0212294d10dc390f7eb727f4c3ca84280 debuginfo(build-id) = aedd0a605ff349ef470adf3a8d9133be8bd87bf1 debuginfo(build-id) = b112407bc1027d95510bd2c0172d666c6c83b223 debuginfo(build-id) = b875565c1ed4000fae9478d0766d9893d6cf5d17 debuginfo(build-id) = bba8272e2120001101436537e2f3776f65b12437 debuginfo(build-id) = be344eeb0ca0053c2272410221c95c82a3d0465f debuginfo(build-id) = c83ceb5b164dfb3d077e250707e7ad9e4b194e08 debuginfo(build-id) = c960dacb1832801f2b72d7f0d32f48e2781d40c6 debuginfo(build-id) = cba6e0ed08f7068a2d02cedf216623045b855f17 debuginfo(build-id) = cd785a61b8475104703c61afb35dc1ee2e842385 debuginfo(build-id) = cdebc3fd6011691835fb707ac1e891568dd4fdb3 debuginfo(build-id) = cf0f592f6bffbe254510173f73c9f2e5ca0322af debuginfo(build-id) = d94d7612c6a767daf6b1c3b03303f037ceee31a8 debuginfo(build-id) = da940b1b369e0e1748b508762c530d047a5ca52a debuginfo(build-id) = e335d318ec29c331336ff4aeb07dc6d7df230703 debuginfo(build-id) = e3d03879dbf1c03daf7b657702689a872b1f1743 debuginfo(build-id) = e3e0ea1296e3557186f2127783267af032f12a3b debuginfo(build-id) = e95568ccaaefba778a211c0d4aa6ef21f7c904f4 debuginfo(build-id) = ee81fa4146b036f9763cece22eaf4371f6ee8328 debuginfo(build-id) = ef1110c37cb7be642c776b56a5a44db9defa4388 debuginfo(build-id) = f08f61a1b8eced59b63763d2c3b25a8246174cee debuginfo(build-id) = f1662220bac9eda376193b6b25712abcd833f4d6 debuginfo(build-id) = f7e0e90983c2dcc048c198de25be44b247237a6d debuginfo(build-id) = fc774a42cbc123068fe7fabd101082242e2986b9
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: cat-surface-debugsource(aarch-64) = 1:1.0.28-1.fc46
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/cat-surface-1.0.28-build/BUILDROOT
Wrote: /builddir/build/RPMS/cat-surface-debugsource-1.0.28-1.fc46.aarch64.rpm
Wrote: /builddir/build/RPMS/cat-surface-1.0.28-1.fc46.aarch64.rpm
Wrote: /builddir/build/RPMS/cat-surface-debuginfo-1.0.28-1.fc46.aarch64.rpm
Finish: rpmbuild cat-surface-1.0.28-1.fc46.src.rpm
Finish: build phase for cat-surface-1.0.28-1.fc46.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-aarch64-1791479665.296469/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/cat-surface-1.0.28-1.fc46.src.rpm) Config(child) 1 minutes 55 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "cat-surface",
            "epoch": 1,
            "version": "1.0.28",
            "release": "1.fc46",
            "arch": "aarch64"
        },
        {
            "name": "cat-surface",
            "epoch": 1,
            "version": "1.0.28",
            "release": "1.fc46",
            "arch": "src"
        },
        {
            "name": "cat-surface-debuginfo",
            "epoch": 1,
            "version": "1.0.28",
            "release": "1.fc46",
            "arch": "aarch64"
        },
        {
            "name": "cat-surface-debugsource",
            "epoch": 1,
            "version": "1.0.28",
            "release": "1.fc46",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished