Warning: Permanently added '18.212.171.36' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/10511662-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.8 PID: 12652 Logging PID: 12654 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 10511662, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'c4ee5bde86e083064e0808200326c8d585f8e890', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer8', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'freesurfer8', 'package_version': '8.2.0-5', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '10511662-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer8 /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/freesurfer8', '/var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8'... Running: git checkout c4ee5bde86e083064e0808200326c8d585f8e890 -- cmd: ['git', 'checkout', 'c4ee5bde86e083064e0808200326c8d585f8e890', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8 rc: 0 stdout: stderr: Note: switching to 'c4ee5bde86e083064e0808200326c8d585f8e890'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at c4ee5bd automatic import of freesurfer8 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading freesurfer-8.2.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o freesurfer-8.2.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/freesurfer8/freesurfer-8.2.0.tar.gz/md5/46be514b2e435f456fded3fde94e2aaa/freesurfer-8.2.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 389M 100 389M 0 0 16.8M 0 0:00:23 0:00:23 --:--:-- 16.0M INFO: Reading stdout from command: md5sum freesurfer-8.2.0.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8/freesurfer8.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1779760896.087886 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.7 starting (python version = 3.14.2, NVR = mock-6.7-1.fc43), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8/freesurfer8.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1779760896.087886 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8/freesurfer8.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.7 INFO: Mock Version: 6.7 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1779760896.087886/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-f92769bf-7e50-402c-be88-5dc04166b00c INFO: Checking that a4d51020bc9a7ee03d6f9a1f11ba4dbba7851721e031545f6cc3166aacefc03a image matches host's architecture INFO: Copy content of container a4d51020bc9a7ee03d6f9a1f11ba4dbba7851721e031545f6cc3166aacefc03a to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1779760896.087886/root INFO: mounting a4d51020bc9a7ee03d6f9a1f11ba4dbba7851721e031545f6cc3166aacefc03a with podman image mount INFO: image a4d51020bc9a7ee03d6f9a1f11ba4dbba7851721e031545f6cc3166aacefc03a as /var/lib/containers/storage/overlay/8f84abbe642adb317cf3fc7671e805559b48cc4bfa41704d52f602ebcb7b4625/merged INFO: umounting image a4d51020bc9a7ee03d6f9a1f11ba4dbba7851721e031545f6cc3166aacefc03a (/var/lib/containers/storage/overlay/8f84abbe642adb317cf3fc7671e805559b48cc4bfa41704d52f602ebcb7b4625/merged) with podman image umount INFO: Removing image mock-bootstrap-f92769bf-7e50-402c-be88-5dc04166b00c INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1779760896.087886/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-5.fc45.x86_64 rpm-sequoia-1.10.2-2.fc45.x86_64 dnf5-5.4.2.1-2.fc45.x86_64 dnf5-plugins-5.4.2.1-2.fc45.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 391.2 KiB/s | 155.3 KiB | 00m00s fedora 100% | 17.9 MiB/s | 21.8 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 0:5.3.9-3.fc44 fedora 8.5 MiB bzip2 x86_64 0:1.0.8-23.fc44 fedora 95.0 KiB coreutils x86_64 0:9.11-2.fc45 fedora 5.9 MiB cpio x86_64 0:2.15-9.fc44 fedora 1.1 MiB diffutils x86_64 0:3.12-5.fc44 fedora 1.6 MiB fedora-release-common noarch 0:45-0.8 fedora 4.2 KiB findutils x86_64 1:4.10.0-7.fc44 fedora 1.9 MiB gawk x86_64 0:5.4.0-3.fc45 fedora 2.2 MiB glibc-minimal-langpack x86_64 0:2.43.9000-16.fc45 fedora 0.0 B grep x86_64 0:3.12-3.fc44 fedora 1.0 MiB gzip x86_64 0:1.14-2.fc44 fedora 401.6 KiB info x86_64 0:7.3-1.fc45 fedora 372.4 KiB patch x86_64 0:2.8-4.fc44 fedora 226.6 KiB redhat-rpm-config noarch 0:344-2.fc45 fedora 183.7 KiB rpm-build x86_64 0:6.0.1-5.fc45 fedora 294.6 KiB sed x86_64 0:4.10-1.fc45 fedora 939.4 KiB shadow-utils x86_64 2:4.19.3-2.fc45 fedora 4.0 MiB tar x86_64 2:1.35-8.fc44 fedora 3.0 MiB unzip x86_64 0:6.0-69.fc44 fedora 445.8 KiB util-linux x86_64 0:2.42.1-4.fc45 fedora 3.7 MiB which x86_64 0:2.23-4.fc44 fedora 83.4 KiB xz x86_64 1:5.8.3-1.fc45 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-2.fc45 fedora 3.5 KiB add-determinism x86_64 0:0.7.3-2.fc45 fedora 2.2 MiB alternatives x86_64 0:1.33-5.fc44 fedora 62.1 KiB ansible-srpm-macros noarch 0:1-20.1.fc44 fedora 35.7 KiB audit-libs x86_64 0:4.1.4-1.fc45 fedora 390.5 KiB binutils x86_64 0:2.46.50-9.fc45 fedora 28.2 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-2.fc45 fedora 1.2 KiB bzip2-libs x86_64 0:1.0.8-23.fc44 fedora 80.5 KiB ca-certificates noarch 0:2025.2.80_v9.0.304-7.fc45 fedora 2.7 MiB cmake-srpm-macros noarch 0:4.3.0-1.fc45 fedora 524.0 B coreutils-common x86_64 0:9.11-2.fc45 fedora 10.9 MiB crypto-policies noarch 0:20251128-3.git19878fe.fc44 fedora 132.6 KiB curl x86_64 0:8.20.0-2.fc45 fedora 483.9 KiB cyrus-sasl-lib x86_64 0:2.1.28-35.fc44 fedora 2.3 MiB debugedit x86_64 0:5.3-2.fc45 fedora 220.8 KiB dwz x86_64 0:0.16-3.fc44 fedora 290.9 KiB ed x86_64 0:1.22.5-2.fc45 fedora 149.7 KiB efi-srpm-macros noarch 0:6-6.fc44 fedora 40.2 KiB elfutils x86_64 0:0.195-1.fc45 fedora 3.0 MiB elfutils-debuginfod-client x86_64 0:0.195-1.fc45 fedora 83.8 KiB elfutils-libelf x86_64 0:0.195-1.fc45 fedora 1.2 MiB elfutils-libs x86_64 0:0.195-1.fc45 fedora 715.3 KiB erlang-srpm-macros noarch 0:0.3.11-1.fc45 fedora 1.9 KiB fedora-gpg-keys noarch 0:45-0.1 fedora 133.4 KiB fedora-release noarch 0:45-0.8 fedora 0.0 B fedora-release-identity-basic noarch 0:45-0.8 fedora 664.0 B fedora-repos noarch 0:45-0.1 fedora 4.9 KiB fedora-repos-rawhide noarch 0:45-0.1 fedora 2.2 KiB file x86_64 0:5.47-2.fc45 fedora 101.2 KiB file-libs x86_64 0:5.47-2.fc45 fedora 12.2 MiB filesystem x86_64 0:3.18-56.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-56.fc45 fedora 38.2 KiB fonts-srpm-macros noarch 1:5.0.0-3.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-4.fc44 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-16.fc44 fedora 144.0 B gap-srpm-macros noarch 0:2-2.fc44 fedora 2.1 KiB gdb-minimal x86_64 0:17.1-5.fc45 fedora 14.2 MiB gdbm-libs x86_64 1:1.23-11.fc44 fedora 129.6 KiB ghc-srpm-macros noarch 0:1.10-1.fc44 fedora 792.0 B glibc x86_64 0:2.43.9000-16.fc45 fedora 7.0 MiB glibc-common x86_64 0:2.43.9000-16.fc45 fedora 1.0 MiB glibc-gconv-extra x86_64 0:2.43.9000-16.fc45 fedora 7.7 MiB gmp x86_64 1:6.3.0-5.fc44 fedora 815.2 KiB gnat-srpm-macros noarch 0:7-2.fc44 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-1.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-2.fc44 fedora 655.0 KiB gnupg2 x86_64 0:2.4.9-16.fc45 fedora 6.5 MiB gnupg2-dirmngr x86_64 0:2.4.9-16.fc45 fedora 634.0 KiB gnupg2-gpg-agent x86_64 0:2.4.9-16.fc45 fedora 686.6 KiB gnupg2-gpgconf x86_64 0:2.4.9-16.fc45 fedora 249.7 KiB gnupg2-keyboxd x86_64 0:2.4.9-16.fc45 fedora 201.2 KiB gnupg2-verify x86_64 0:2.4.9-16.fc45 fedora 360.3 KiB gnutls x86_64 0:3.8.13-1.fc45 fedora 3.8 MiB go-srpm-macros noarch 0:3.8.0-2.fc44 fedora 61.9 KiB gpgverify noarch 0:2.2-4.fc44 fedora 8.7 KiB ima-evm-utils-libs x86_64 0:1.6.2-10.fc45 fedora 60.6 KiB jansson x86_64 0:2.14-4.fc44 fedora 88.9 KiB java-srpm-macros noarch 0:1-8.fc44 fedora 870.0 B json-c x86_64 0:0.18-8.fc44 fedora 82.6 KiB kernel-srpm-macros noarch 0:1.0-29.fc45 fedora 1.9 KiB keyutils-libs x86_64 0:1.6.3-7.fc44 fedora 54.2 KiB krb5-libs x86_64 0:1.22.2-7.fc45 fedora 2.4 MiB libacl x86_64 0:2.3.2-6.fc44 fedora 35.8 KiB libarchive x86_64 0:3.8.7-1.fc45 fedora 1.0 MiB libassuan x86_64 0:2.5.7-5.fc44 fedora 163.8 KiB libattr x86_64 0:2.5.2-8.fc44 fedora 24.3 KiB libblkid x86_64 0:2.42.1-4.fc45 fedora 282.3 KiB libbrotli x86_64 0:1.2.0-3.fc44 fedora 865.0 KiB libcap x86_64 0:2.78-1.fc45 fedora 212.1 KiB libcap-ng x86_64 0:0.9.3-1.fc45 fedora 68.8 KiB libcbor x86_64 0:0.14.0-2.fc45 fedora 83.5 KiB libcom_err x86_64 0:1.47.4-1.fc45 fedora 63.0 KiB libcurl x86_64 0:8.20.0-2.fc45 fedora 1.0 MiB libeconf x86_64 0:0.7.9-3.fc44 fedora 64.8 KiB libevent x86_64 0:2.1.12-17.fc44 fedora 978.7 KiB libfdisk x86_64 0:2.42.1-4.fc45 fedora 392.2 KiB libffi x86_64 0:3.5.2-2.fc44 fedora 87.7 KiB libfido2 x86_64 0:1.17.0-2.fc45 fedora 260.5 KiB libfsverity x86_64 0:1.7-1.fc45 fedora 28.4 KiB libgcc x86_64 0:16.1.1-2.fc45 fedora 270.7 KiB libgcrypt x86_64 0:1.12.2-1.fc45 fedora 1.7 MiB libgomp x86_64 0:16.1.1-2.fc45 fedora 577.4 KiB libgpg-error x86_64 0:1.61-1.fc45 fedora 949.8 KiB libidn2 x86_64 0:2.3.8-3.fc44 fedora 556.4 KiB libksba x86_64 0:1.8.0-1.fc45 fedora 431.1 KiB liblastlog2 x86_64 0:2.42.1-4.fc45 fedora 37.6 KiB libmount x86_64 0:2.42.1-4.fc45 fedora 400.8 KiB libnghttp2 x86_64 0:1.69.0-1.fc45 fedora 166.1 KiB libnghttp3 x86_64 0:1.15.0-1.fc44 fedora 159.2 KiB libpkgconf x86_64 0:2.5.1-1.fc45 fedora 90.1 KiB libpsl x86_64 0:0.21.5-7.fc44 fedora 76.3 KiB libselinux x86_64 0:3.10-1.fc44 fedora 201.0 KiB libselinux-utils x86_64 0:3.10-1.fc44 fedora 305.7 KiB libsemanage x86_64 0:3.10-1.fc44 fedora 312.3 KiB libsepol x86_64 0:3.10-1.fc44 fedora 870.0 KiB libsmartcols x86_64 0:2.42.1-4.fc45 fedora 188.5 KiB libssh x86_64 0:0.12.0-1.fc45 fedora 719.1 KiB libssh-config noarch 0:0.12.0-1.fc45 fedora 277.0 B libstdc++ x86_64 0:16.1.1-2.fc45 fedora 3.1 MiB libtasn1 x86_64 0:4.21.0-1.fc45 fedora 180.6 KiB libtool-ltdl x86_64 0:2.5.4-10.fc44 fedora 70.0 KiB libunistring x86_64 0:1.1-11.fc44 fedora 1.7 MiB libusb1 x86_64 0:1.0.30-1.fc45 fedora 180.1 KiB libuuid x86_64 0:2.42.1-4.fc45 fedora 37.3 KiB libverto x86_64 0:0.3.2-12.fc44 fedora 25.3 KiB libxcrypt x86_64 0:4.5.2-3.fc44 fedora 293.2 KiB libxml2 x86_64 0:2.13.9-1.fc45 fedora 1.8 MiB libzstd x86_64 0:1.5.7-5.fc44 fedora 956.1 KiB linkdupes x86_64 0:0.7.3-2.fc45 fedora 780.9 KiB lua-libs x86_64 0:5.5.0-1.fc45 fedora 297.9 KiB lua-srpm-macros noarch 0:1-17.fc44 fedora 1.3 KiB lz4-libs x86_64 0:1.10.0-4.fc44 fedora 157.3 KiB mpfr x86_64 0:4.2.2-3.fc44 fedora 849.1 KiB ncurses-base noarch 0:6.6-2.fc45 fedora 329.7 KiB ncurses-libs x86_64 0:6.6-2.fc45 fedora 968.8 KiB nettle x86_64 0:3.10.1-3.fc44 fedora 794.3 KiB ngtcp2 x86_64 0:1.22.1-1.fc45 fedora 338.2 KiB ngtcp2-crypto-ossl x86_64 0:1.22.1-1.fc45 fedora 51.6 KiB npth x86_64 0:1.8-4.fc44 fedora 49.5 KiB ocaml-srpm-macros noarch 0:11-3.fc44 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-21.fc44 fedora 112.0 B openldap x86_64 0:2.6.13-1.fc45 fedora 669.9 KiB openssl-libs x86_64 1:3.5.6-1.fc45 fedora 9.2 MiB p11-kit x86_64 0:0.26.2-1.fc45 fedora 2.6 MiB p11-kit-trust x86_64 0:0.26.2-1.fc45 fedora 478.3 KiB package-notes-srpm-macros noarch 0:0.17-3.fc45 fedora 1.6 KiB pam-libs x86_64 0:1.7.2-1.fc44 fedora 130.5 KiB pcre2 x86_64 0:10.47-1.fc44.1 fedora 718.6 KiB pcre2-syntax noarch 0:10.47-1.fc44.1 fedora 281.9 KiB perl-srpm-macros noarch 0:1-61.fc44 fedora 861.0 B pkgconf x86_64 0:2.5.1-1.fc45 fedora 92.7 KiB pkgconf-m4 noarch 0:2.5.1-1.fc45 fedora 14.3 KiB pkgconf-pkg-config x86_64 0:2.5.1-1.fc45 fedora 989.0 B policycoreutils x86_64 0:3.10-3.fc45 fedora 884.5 KiB popt x86_64 0:1.19-10.fc44 fedora 132.6 KiB publicsuffix-list-dafsa noarch 0:20260116-1.fc44 fedora 70.4 KiB pyproject-srpm-macros noarch 0:1.22.2-1.fc45 fedora 3.2 KiB python-srpm-macros noarch 0:3.14-12.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-2.fc44 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.1-1.fc45 fedora 472.0 B readline x86_64 0:8.3-4.fc44 fedora 519.5 KiB redhat-systemd-presets noarch 0:102-1.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-1.fc45 fedora 16.6 KiB rpm x86_64 0:6.0.1-5.fc45 fedora 3.1 MiB rpm-build-libs x86_64 0:6.0.1-5.fc45 fedora 276.3 KiB rpm-libs x86_64 0:6.0.1-5.fc45 fedora 961.2 KiB rpm-plugin-selinux x86_64 0:6.0.1-5.fc45 fedora 11.9 KiB rpm-sequoia x86_64 0:1.10.2-2.fc45 fedora 2.4 MiB rpm-sign-libs x86_64 0:6.0.1-5.fc45 fedora 39.6 KiB rust-srpm-macros noarch 0:28.4-3.fc44 fedora 5.5 KiB selinux-policy noarch 0:45.3-1.fc45 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.3-1.fc45 fedora 18.9 MiB setup noarch 0:2.15.0-29.fc45 fedora 724.9 KiB sqlite-libs x86_64 0:3.53.1-1.fc45 fedora 1.6 MiB systemd-libs x86_64 0:261~rc1-1.fc45 fedora 2.7 MiB systemd-standalone-sysusers x86_64 0:261~rc1-1.fc45 fedora 940.4 KiB tpm2-tss x86_64 0:4.1.3-9.fc44 fedora 1.6 MiB tree-sitter-srpm-macros noarch 0:0.4.6-1.fc45 fedora 8.6 KiB util-linux-core x86_64 0:2.42.1-4.fc45 fedora 1.5 MiB xxhash-libs x86_64 0:0.8.3-4.fc44 fedora 94.0 KiB xz-libs x86_64 1:5.8.3-1.fc45 fedora 217.7 KiB zig-srpm-macros noarch 0:1-8.fc44 fedora 1.3 KiB zip x86_64 0:3.0-45.fc44 fedora 698.0 KiB zlib-ng-compat x86_64 0:2.3.3-5.fc45 fedora 165.6 KiB zstd x86_64 0:1.5.7-5.fc44 fedora 502.4 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 187 packages Total size of inbound packages is 70 MiB. Need to download 70 MiB. After this operation, 227 MiB extra will be used (install 227 MiB, remove 0 B). [ 1/187] bzip2-0:1.0.8-23.fc44.x86_64 100% | 12.7 MiB/s | 52.1 KiB | 00m00s [ 2/187] bash-0:5.3.9-3.fc44.x86_64 100% | 172.2 MiB/s | 1.9 MiB | 00m00s [ 3/187] cpio-0:2.15-9.fc44.x86_64 100% | 95.5 MiB/s | 293.4 KiB | 00m00s [ 4/187] diffutils-0:3.12-5.fc44.x86_6 100% | 193.0 MiB/s | 395.3 KiB | 00m00s [ 5/187] coreutils-0:9.11-2.fc45.x86_6 100% | 92.5 MiB/s | 1.2 MiB | 00m00s [ 6/187] fedora-release-common-0:45-0. 100% | 4.5 MiB/s | 18.6 KiB | 00m00s [ 7/187] findutils-1:4.10.0-7.fc44.x86 100% | 134.9 MiB/s | 552.5 KiB | 00m00s [ 8/187] glibc-minimal-langpack-0:2.43 100% | 33.2 MiB/s | 101.9 KiB | 00m00s [ 9/187] grep-0:3.12-3.fc44.x86_64 100% | 58.9 MiB/s | 301.6 KiB | 00m00s [ 10/187] gzip-0:1.14-2.fc44.x86_64 100% | 43.7 MiB/s | 179.1 KiB | 00m00s [ 11/187] info-0:7.3-1.fc45.x86_64 100% | 46.6 MiB/s | 190.8 KiB | 00m00s [ 12/187] patch-0:2.8-4.fc44.x86_64 100% | 56.3 MiB/s | 115.2 KiB | 00m00s [ 13/187] redhat-rpm-config-0:344-2.fc4 100% | 38.1 MiB/s | 78.0 KiB | 00m00s [ 14/187] rpm-build-0:6.0.1-5.fc45.x86_ 100% | 68.3 MiB/s | 139.9 KiB | 00m00s [ 15/187] sed-0:4.10-1.fc45.x86_64 100% | 87.7 MiB/s | 359.1 KiB | 00m00s [ 16/187] shadow-utils-2:4.19.3-2.fc45. 100% | 189.7 MiB/s | 1.3 MiB | 00m00s [ 17/187] tar-2:1.35-8.fc44.x86_64 100% | 106.0 MiB/s | 868.2 KiB | 00m00s [ 18/187] unzip-0:6.0-69.fc44.x86_64 100% | 27.8 MiB/s | 199.6 KiB | 00m00s [ 19/187] which-0:2.23-4.fc44.x86_64 100% | 20.6 MiB/s | 42.2 KiB | 00m00s [ 20/187] xz-1:5.8.3-1.fc45.x86_64 100% | 128.0 MiB/s | 655.2 KiB | 00m00s [ 21/187] gawk-0:5.4.0-3.fc45.x86_64 100% | 145.8 MiB/s | 1.2 MiB | 00m00s [ 22/187] util-linux-0:2.42.1-4.fc45.x8 100% | 114.8 MiB/s | 1.3 MiB | 00m00s [ 23/187] filesystem-0:3.18-56.fc45.x86 100% | 122.2 MiB/s | 1.8 MiB | 00m00s [ 24/187] glibc-0:2.43.9000-16.fc45.x86 100% | 134.3 MiB/s | 2.4 MiB | 00m00s [ 25/187] ncurses-libs-0:6.6-2.fc45.x86 100% | 20.9 MiB/s | 343.2 KiB | 00m00s [ 26/187] bzip2-libs-0:1.0.8-23.fc44.x8 100% | 5.3 MiB/s | 43.8 KiB | 00m00s [ 27/187] coreutils-common-0:9.11-2.fc4 100% | 216.7 MiB/s | 2.2 MiB | 00m00s [ 28/187] gmp-1:6.3.0-5.fc44.x86_64 100% | 31.5 MiB/s | 322.5 KiB | 00m00s [ 29/187] libacl-0:2.3.2-6.fc44.x86_64 100% | 2.4 MiB/s | 24.8 KiB | 00m00s [ 30/187] libattr-0:2.5.2-8.fc44.x86_64 100% | 17.5 MiB/s | 17.9 KiB | 00m00s [ 31/187] libcap-0:2.78-1.fc45.x86_64 100% | 43.7 MiB/s | 89.4 KiB | 00m00s [ 32/187] libselinux-0:3.10-1.fc44.x86_ 100% | 49.8 MiB/s | 102.0 KiB | 00m00s [ 33/187] openssl-libs-1:3.5.6-1.fc45.x 100% | 249.7 MiB/s | 2.7 MiB | 00m00s [ 34/187] systemd-libs-0:261~rc1-1.fc45 100% | 77.1 MiB/s | 947.8 KiB | 00m00s [ 35/187] fedora-repos-0:45-0.1.noarch 100% | 838.6 KiB/s | 9.2 KiB | 00m00s [ 36/187] redhat-systemd-presets-0:102- 100% | 4.1 MiB/s | 8.3 KiB | 00m00s [ 37/187] glibc-common-0:2.43.9000-16.f 100% | 128.3 MiB/s | 394.1 KiB | 00m00s [ 38/187] pcre2-0:10.47-1.fc44.1.x86_64 100% | 67.8 MiB/s | 277.7 KiB | 00m00s [ 39/187] ed-0:1.22.5-2.fc45.x86_64 100% | 13.9 MiB/s | 85.4 KiB | 00m00s [ 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openldap-0:2.6.13-1.fc45.x86_ 100% | 44.3 MiB/s | 272.0 KiB | 00m00s [143/187] libusb1-0:1.0.30-1.fc45.x86_6 100% | 40.9 MiB/s | 83.7 KiB | 00m00s [144/187] libidn2-0:2.3.8-3.fc44.x86_64 100% | 57.1 MiB/s | 175.5 KiB | 00m00s [145/187] libtasn1-0:4.21.0-1.fc45.x86_ 100% | 24.7 MiB/s | 76.0 KiB | 00m00s [146/187] libunistring-0:1.1-11.fc44.x8 100% | 133.7 MiB/s | 547.8 KiB | 00m00s [147/187] nettle-0:3.10.1-3.fc44.x86_64 100% | 104.5 MiB/s | 428.0 KiB | 00m00s [148/187] p11-kit-0:0.26.2-1.fc45.x86_6 100% | 108.6 MiB/s | 555.9 KiB | 00m00s [149/187] cyrus-sasl-lib-0:2.1.28-35.fc 100% | 156.4 MiB/s | 800.7 KiB | 00m00s [150/187] libevent-0:2.1.12-17.fc44.x86 100% | 70.2 MiB/s | 287.4 KiB | 00m00s [151/187] libtool-ltdl-0:2.5.4-10.fc44. 100% | 12.1 MiB/s | 37.0 KiB | 00m00s [152/187] libffi-0:3.5.2-2.fc44.x86_64 100% | 41.4 MiB/s | 42.4 KiB | 00m00s [153/187] gdbm-libs-1:1.23-11.fc44.x86_ 100% | 28.7 MiB/s | 58.8 KiB | 00m00s [154/187] alternatives-0:1.33-5.fc44.x8 100% | 3.3 MiB/s | 40.8 KiB | 00m00s [155/187] jansson-0:2.14-4.fc44.x86_64 100% | 3.1 MiB/s | 47.1 KiB | 00m00s [156/187] pkgconf-pkg-config-0:2.5.1-1. 100% | 1.2 MiB/s | 9.5 KiB | 00m00s [157/187] binutils-0:2.46.50-9.fc45.x86 100% | 220.9 MiB/s | 6.2 MiB | 00m00s [158/187] pkgconf-0:2.5.1-1.fc45.x86_64 100% | 4.3 MiB/s | 48.7 KiB | 00m00s [159/187] pkgconf-m4-0:2.5.1-1.fc45.noa 100% | 2.2 MiB/s | 13.8 KiB | 00m00s [160/187] libpkgconf-0:2.5.1-1.fc45.x86 100% | 41.7 MiB/s | 42.7 KiB | 00m00s [161/187] p11-kit-trust-0:0.26.2-1.fc45 100% | 71.5 MiB/s | 146.4 KiB | 00m00s [162/187] fedora-release-0:45-0.8.noarc 100% | 6.2 MiB/s | 12.7 KiB | 00m00s [163/187] systemd-standalone-sysusers-0 100% | 134.2 MiB/s | 412.4 KiB | 00m00s [164/187] xxhash-libs-0:0.8.3-4.fc44.x8 100% | 4.5 MiB/s | 41.2 KiB | 00m00s [165/187] fedora-release-identity-basic 100% | 789.7 KiB/s | 13.4 KiB | 00m00s [166/187] libcurl-0:8.20.0-2.fc45.x86_6 100% | 38.1 MiB/s | 467.6 KiB | 00m00s [167/187] gdb-minimal-0:17.1-5.fc45.x86 100% | 152.7 MiB/s | 4.7 MiB | 00m00s [168/187] krb5-libs-0:1.22.2-7.fc45.x86 100% | 60.3 MiB/s | 803.3 KiB | 00m00s [169/187] libbrotli-0:1.2.0-3.fc44.x86_ 100% | 30.9 MiB/s | 347.8 KiB | 00m00s [170/187] libnghttp2-0:1.69.0-1.fc45.x8 100% | 37.7 MiB/s | 77.2 KiB | 00m00s [171/187] libnghttp3-0:1.15.0-1.fc44.x8 100% | 36.1 MiB/s | 73.9 KiB | 00m00s [172/187] libpsl-0:0.21.5-7.fc44.x86_64 100% | 31.9 MiB/s | 65.3 KiB | 00m00s [173/187] libssh-0:0.12.0-1.fc45.x86_64 100% | 95.6 MiB/s | 293.7 KiB | 00m00s [174/187] ngtcp2-0:1.22.1-1.fc45.x86_64 100% | 51.2 MiB/s | 157.4 KiB | 00m00s [175/187] ngtcp2-crypto-ossl-0:1.22.1-1 100% | 13.5 MiB/s | 27.7 KiB | 00m00s [176/187] keyutils-libs-0:1.6.3-7.fc44. 100% | 30.8 MiB/s | 31.5 KiB | 00m00s [177/187] libcom_err-0:1.47.4-1.fc45.x8 100% | 26.0 MiB/s | 26.6 KiB | 00m00s [178/187] libverto-0:0.3.2-12.fc44.x86_ 100% | 20.6 MiB/s | 21.1 KiB | 00m00s [179/187] publicsuffix-list-dafsa-0:202 100% | 58.9 MiB/s | 60.3 KiB | 00m00s [180/187] libfido2-0:1.17.0-2.fc45.x86_ 100% | 52.2 MiB/s | 106.9 KiB | 00m00s [181/187] libssh-config-0:0.12.0-1.fc45 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [182/187] libcbor-0:0.14.0-2.fc45.x86_6 100% | 35.8 MiB/s | 36.6 KiB | 00m00s [183/187] policycoreutils-0:3.10-3.fc45 100% | 28.4 MiB/s | 261.7 KiB | 00m00s [184/187] selinux-policy-0:45.3-1.fc45. 100% | 5.6 MiB/s | 74.6 KiB | 00m00s [185/187] libselinux-utils-0:3.10-1.fc4 100% | 16.7 MiB/s | 119.6 KiB | 00m00s [186/187] selinux-policy-targeted-0:45. 100% | 263.0 MiB/s | 6.8 MiB | 00m00s [187/187] rpm-plugin-selinux-0:6.0.1-5. 100% | 1.7 MiB/s | 19.1 KiB | 00m00s -------------------------------------------------------------------------------- [187/187] Total 100% | 208.8 MiB/s | 70.4 MiB | 00m00s Running transaction Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x6D9F90A6: UserID : "Fedora (44) " Fingerprint: 36F612DCF27F7D1A48A835E4DBFCF71C6D9F90A6 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-44-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. [ 1/189] Verify package files 100% | 642.0 B/s | 187.0 B | 00m00s [ 2/189] Prepare transaction 100% | 3.0 KiB/s | 187.0 B | 00m00s [ 3/189] Installing libgcc-0:16.1.1-2. 100% | 266.0 MiB/s | 272.4 KiB | 00m00s [ 4/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/189] Installing redhat-systemd-pre 100% | 0.0 B/s | 17.8 KiB | 00m00s [ 6/189] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/189] Installing publicsuffix-list- 100% | 0.0 B/s | 71.1 KiB | 00m00s [ 8/189] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 9/189] Installing fedora-gpg-keys-0: 100% | 44.5 MiB/s | 182.1 KiB | 00m00s [ 10/189] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 11/189] Installing fedora-repos-0:45- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 12/189] Installing fedora-release-com 100% | 7.3 MiB/s | 7.4 KiB | 00m00s [ 13/189] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.0-29.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/189] Installing setup-0:2.15.0-29. 100% | 35.7 MiB/s | 730.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/189] Installing filesystem-0:3.18- 100% | 2.3 MiB/s | 289.4 KiB | 00m00s [ 16/189] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/189] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 18/189] Installing gnulib-l10n-0:2024 100% | 161.6 MiB/s | 661.9 KiB | 00m00s [ 19/189] Installing coreutils-common-0 100% | 353.5 MiB/s | 11.0 MiB | 00m00s [ 20/189] Installing ncurses-base-0:6.6 100% | 86.7 MiB/s | 355.3 KiB | 00m00s [ 21/189] Installing bash-0:5.3.9-3.fc4 100% | 184.4 MiB/s | 8.5 MiB | 00m00s [ 22/189] Installing glibc-common-0:2.4 100% | 36.8 MiB/s | 1.0 MiB | 00m00s [ 23/189] Installing glibc-gconv-extra- 100% | 267.6 MiB/s | 7.8 MiB | 00m00s [ 24/189] Installing glibc-0:2.43.9000- 100% | 137.5 MiB/s | 7.0 MiB | 00m00s [ 25/189] Installing ncurses-libs-0:6.6 100% | 238.0 MiB/s | 974.7 KiB | 00m00s [ 26/189] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/189] Installing zlib-ng-compat-0:2 100% | 162.5 MiB/s | 166.4 KiB | 00m00s [ 28/189] Installing bzip2-libs-0:1.0.8 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 29/189] Installing libgpg-error-0:1.6 100% | 34.6 MiB/s | 955.7 KiB | 00m00s [ 30/189] Installing libstdc++-0:16.1.1 100% | 343.3 MiB/s | 3.1 MiB | 00m00s [ 31/189] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB | 00m00s [ 32/189] Installing libgcrypt-0:1.12.2 100% | 331.7 MiB/s | 1.7 MiB | 00m00s [ 33/189] Installing readline-0:8.3-4.f 100% | 254.7 MiB/s | 521.6 KiB | 00m00s [ 34/189] Installing gmp-1:6.3.0-5.fc44 100% | 266.1 MiB/s | 817.5 KiB | 00m00s [ 35/189] Installing systemd-libs-0:261 100% | 303.0 MiB/s | 2.7 MiB | 00m00s [ 36/189] Installing xz-libs-1:5.8.3-1. 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [ 37/189] Installing libuuid-0:2.42.1-4 100% | 37.5 MiB/s | 38.4 KiB | 00m00s [ 38/189] Installing libzstd-0:1.5.7-5. 100% | 311.6 MiB/s | 957.4 KiB | 00m00s [ 39/189] Installing elfutils-libelf-0: 100% | 290.5 MiB/s | 1.2 MiB | 00m00s [ 40/189] Installing popt-0:1.19-10.fc4 100% | 68.0 MiB/s | 139.3 KiB | 00m00s [ 41/189] Installing npth-0:1.8-4.fc44. 100% | 49.4 MiB/s | 50.6 KiB | 00m00s [ 42/189] Installing elfutils-libs-0:0. 100% | 233.4 MiB/s | 717.1 KiB | 00m00s [ 43/189] Installing libblkid-0:2.42.1- 100% | 276.7 MiB/s | 283.4 KiB | 00m00s [ 44/189] Installing libattr-0:2.5.2-8. 100% | 0.0 B/s | 25.2 KiB | 00m00s [ 45/189] Installing libacl-0:2.3.2-6.f 100% | 0.0 B/s | 36.6 KiB | 00m00s [ 46/189] Installing libsepol-0:3.10-1. 100% | 283.5 MiB/s | 871.0 KiB | 00m00s [ 47/189] Installing sqlite-libs-0:3.53 100% | 268.5 MiB/s | 1.6 MiB | 00m00s [ 48/189] Installing gnupg2-gpgconf-0:2 100% | 9.8 MiB/s | 251.8 KiB | 00m00s [ 49/189] Installing pcre2-0:10.47-1.fc 100% | 351.6 MiB/s | 720.0 KiB | 00m00s [ 50/189] Installing libselinux-0:3.10- 100% | 197.5 MiB/s | 202.3 KiB | 00m00s [ 51/189] Installing grep-0:3.12-3.fc44 100% | 35.8 MiB/s | 1.0 MiB | 00m00s [ 52/189] Installing sed-0:4.10-1.fc45. 100% | 34.3 MiB/s | 947.8 KiB | 00m00s [ 53/189] Installing findutils-1:4.10.0 100% | 64.5 MiB/s | 1.9 MiB | 00m00s [ 54/189] Installing libxcrypt-0:4.5.2- 100% | 289.0 MiB/s | 295.9 KiB | 00m00s [ 55/189] Installing libtasn1-0:4.21.0- 100% | 178.2 MiB/s | 182.4 KiB | 00m00s [ 56/189] Installing libunistring-0:1.1 100% | 346.9 MiB/s | 1.7 MiB | 00m00s [ 57/189] Installing libidn2-0:2.3.8-3. 100% | 68.7 MiB/s | 562.6 KiB | 00m00s [ 58/189] Installing crypto-policies-0: 100% | 30.8 MiB/s | 157.7 KiB | 00m00s [ 59/189] Installing xz-1:5.8.3-1.fc45. 100% | 45.3 MiB/s | 1.4 MiB | 00m00s [ 60/189] Installing libmount-0:2.42.1- 100% | 196.2 MiB/s | 401.8 KiB | 00m00s [ 61/189] Installing gnupg2-verify-0:2. 100% | 14.1 MiB/s | 361.7 KiB | 00m00s [ 62/189] Installing dwz-0:0.16-3.fc44. 100% | 11.9 MiB/s | 292.3 KiB | 00m00s [ 63/189] Installing mpfr-0:4.2.2-3.fc4 100% | 276.9 MiB/s | 850.8 KiB | 00m00s [ 64/189] Installing gawk-0:5.4.0-3.fc4 100% | 71.8 MiB/s | 2.2 MiB | 00m00s [ 65/189] Installing libksba-0:1.8.0-1. 100% | 211.8 MiB/s | 433.7 KiB | 00m00s [ 66/189] Installing unzip-0:6.0-69.fc4 100% | 17.6 MiB/s | 449.3 KiB | 00m00s [ 67/189] Installing file-libs-0:5.47-2 100% | 580.5 MiB/s | 12.2 MiB | 00m00s [ 68/189] Installing file-0:5.47-2.fc45 100% | 4.2 MiB/s | 102.6 KiB | 00m00s [ 69/189] Installing diffutils-0:3.12-5 100% | 54.2 MiB/s | 1.6 MiB | 00m00s [ 70/189] Installing libeconf-0:0.7.9-3 100% | 64.9 MiB/s | 66.4 KiB | 00m00s [ 71/189] Installing libcap-ng-0:0.9.3- 100% | 69.0 MiB/s | 70.6 KiB | 00m00s [ 72/189] Installing audit-libs-0:4.1.4 100% | 191.9 MiB/s | 393.0 KiB | 00m00s [ 73/189] Installing pam-libs-0:1.7.2-1 100% | 129.8 MiB/s | 132.9 KiB | 00m00s [ 74/189] Installing libcap-0:2.78-1.fc 100% | 8.5 MiB/s | 217.2 KiB | 00m00s [ 75/189] Installing libsemanage-0:3.10 100% | 153.4 MiB/s | 314.1 KiB | 00m00s [ 76/189] Installing libsmartcols-0:2.4 100% | 185.2 MiB/s | 189.6 KiB | 00m00s [ 77/189] Installing lua-libs-0:5.5.0-1 100% | 292.4 MiB/s | 299.4 KiB | 00m00s [ 78/189] Installing json-c-0:0.18-8.fc 100% | 81.9 MiB/s | 83.9 KiB | 00m00s [ 79/189] Installing libffi-0:3.5.2-2.f 100% | 87.0 MiB/s | 89.1 KiB | 00m00s [ 80/189] Installing p11-kit-0:0.26.2-1 100% | 78.6 MiB/s | 2.6 MiB | 00m00s [ 81/189] Installing alternatives-0:1.3 100% | 2.6 MiB/s | 63.6 KiB | 00m00s [ 82/189] Installing p11-kit-trust-0:0. 100% | 15.6 MiB/s | 480.0 KiB | 00m00s [ 83/189] Installing ngtcp2-0:1.22.1-1. 100% | 165.9 MiB/s | 339.7 KiB | 00m00s [ 84/189] Installing openssl-libs-1:3.5 100% | 353.4 MiB/s | 9.2 MiB | 00m00s [ 85/189] Installing coreutils-0:9.11-2 100% | 128.2 MiB/s | 5.9 MiB | 00m00s [ 86/189] Installing ca-certificates-0: 100% | 1.9 MiB/s | 2.5 MiB | 00m01s [ 87/189] Installing gzip-0:1.14-2.fc44 100% | 15.3 MiB/s | 407.1 KiB | 00m00s [ 88/189] Installing rpm-sequoia-0:1.10 100% | 336.5 MiB/s | 2.4 MiB | 00m00s [ 89/189] Installing libfsverity-0:1.7- 100% | 0.0 B/s | 29.4 KiB | 00m00s [ 90/189] Installing libevent-0:2.1.12- 100% | 319.8 MiB/s | 982.4 KiB | 00m00s [ 91/189] Installing ngtcp2-crypto-ossl 100% | 51.3 MiB/s | 52.5 KiB | 00m00s [ 92/189] Installing util-linux-core-0: 100% | 48.3 MiB/s | 1.5 MiB | 00m00s [ 93/189] Installing liblastlog2-0:2.42 100% | 7.8 MiB/s | 39.8 KiB | 00m00s [ 94/189] Installing zip-0:3.0-45.fc44. 100% | 25.4 MiB/s | 701.9 KiB | 00m00s [ 95/189] Installing gnupg2-keyboxd-0:2 100% | 39.5 MiB/s | 202.5 KiB | 00m00s [ 96/189] Installing libpsl-0:0.21.5-7. 100% | 75.6 MiB/s | 77.4 KiB | 00m00s [ 97/189] Installing tar-2:1.35-8.fc44. 100% | 90.2 MiB/s | 3.0 MiB | 00m00s [ 98/189] Installing linkdupes-0:0.7.3- 100% | 29.4 MiB/s | 782.3 KiB | 00m00s [ 99/189] Installing libselinux-utils-0 100% | 12.0 MiB/s | 320.1 KiB | 00m00s [100/189] Installing libfdisk-0:2.42.1- 100% | 128.0 MiB/s | 393.2 KiB | 00m00s [101/189] Installing util-linux-0:2.42. 100% | 79.8 MiB/s | 3.7 MiB | 00m00s [102/189] Installing policycoreutils-0: 100% | 24.8 MiB/s | 912.9 KiB | 00m00s [103/189] Installing selinux-policy-0:4 100% | 2.0 MiB/s | 34.6 KiB | 00m00s [104/189] Installing selinux-policy-tar 100% | 191.0 MiB/s | 15.1 MiB | 00m00s [105/189] Installing zstd-0:1.5.7-5.fc4 100% | 18.3 MiB/s | 506.0 KiB | 00m00s [106/189] Installing libxml2-0:2.13.9-1 100% | 60.6 MiB/s | 1.8 MiB | 00m00s [107/189] Installing libusb1-0:1.0.30-1 100% | 25.4 MiB/s | 181.8 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.1.3-9.fc44.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [108/189] Installing tpm2-tss-0:4.1.3-9 100% | 272.2 MiB/s | 1.6 MiB | 00m00s [109/189] Installing ima-evm-utils-libs 100% | 60.5 MiB/s | 61.9 KiB | 00m00s [110/189] Installing gnupg2-gpg-agent-0 100% | 21.8 MiB/s | 690.6 KiB | 00m00s [111/189] Installing nettle-0:3.10.1-3. 100% | 259.6 MiB/s | 797.4 KiB | 00m00s [112/189] Installing gnutls-0:3.8.13-1. 100% | 320.8 MiB/s | 3.8 MiB | 00m00s [113/189] Installing bzip2-0:1.0.8-23.f 100% | 3.9 MiB/s | 99.5 KiB | 00m00s [114/189] Installing add-determinism-0: 100% | 72.7 MiB/s | 2.2 MiB | 00m00s [115/189] Installing build-reproducibil 100% | 0.0 B/s | 1.5 KiB | 00m00s [116/189] Installing cpio-0:2.15-9.fc44 100% | 40.9 MiB/s | 1.1 MiB | 00m00s [117/189] Installing ed-0:1.22.5-2.fc45 100% | 6.2 MiB/s | 152.0 KiB | 00m00s [118/189] Installing patch-0:2.8-4.fc44 100% | 9.3 MiB/s | 228.1 KiB | 00m00s [119/189] Installing lz4-libs-0:1.10.0- 100% | 154.6 MiB/s | 158.4 KiB | 00m00s [120/189] Installing libarchive-0:3.8.7 100% | 244.5 MiB/s | 1.0 MiB | 00m00s [121/189] Installing libgomp-0:16.1.1-2 100% | 282.6 MiB/s | 578.8 KiB | 00m00s [122/189] Installing libtool-ltdl-0:2.5 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [123/189] Installing gdbm-libs-1:1.23-1 100% | 128.3 MiB/s | 131.3 KiB | 00m00s [124/189] Installing cyrus-sasl-lib-0:2 100% | 74.5 MiB/s | 2.3 MiB | 00m00s [125/189] Installing openldap-0:2.6.13- 100% | 219.3 MiB/s | 673.7 KiB | 00m00s [126/189] Installing gnupg2-dirmngr-0:2 100% | 20.1 MiB/s | 636.7 KiB | 00m00s [127/189] Installing gnupg2-0:2.4.9-16. 100% | 151.3 MiB/s | 6.5 MiB | 00m00s [128/189] Installing gpgverify-0:2.2-4. 100% | 0.0 B/s | 9.4 KiB | 00m00s [129/189] Installing jansson-0:2.14-4.f 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [130/189] Installing libpkgconf-0:2.5.1 100% | 89.1 MiB/s | 91.3 KiB | 00m00s [131/189] Installing pkgconf-0:2.5.1-1. 100% | 3.9 MiB/s | 95.2 KiB | 00m00s [132/189] Installing pkgconf-pkg-config 100% | 77.1 KiB/s | 1.8 KiB | 00m00s [133/189] Installing systemd-standalone 100% | 35.3 MiB/s | 940.9 KiB | 00m00s [134/189] Installing rpm-libs-0:6.0.1-5 100% | 235.0 MiB/s | 962.8 KiB | 00m00s [135/189] Installing rpm-sign-libs-0:6. 100% | 39.4 MiB/s | 40.3 KiB | 00m00s [136/189] Installing rpm-build-libs-0:6 100% | 270.7 MiB/s | 277.2 KiB | 00m00s [137/189] Installing xxhash-libs-0:0.8. 100% | 93.2 MiB/s | 95.4 KiB | 00m00s [138/189] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [139/189] Installing libnghttp2-0:1.69. 100% | 163.3 MiB/s | 167.3 KiB | 00m00s [140/189] Installing libnghttp3-0:1.15. 100% | 156.8 MiB/s | 160.6 KiB | 00m00s [141/189] Installing keyutils-libs-0:1. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [142/189] Installing libcom_err-0:1.47. 100% | 62.5 MiB/s | 64.0 KiB | 00m00s [143/189] Installing libverto-0:0.3.2-1 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [144/189] Installing krb5-libs-0:1.22.2 100% | 266.1 MiB/s | 2.4 MiB | 00m00s [145/189] Installing libcbor-0:0.14.0-2 100% | 82.9 MiB/s | 84.9 KiB | 00m00s [146/189] Installing libfido2-0:1.17.0- 100% | 255.9 MiB/s | 262.0 KiB | 00m00s [147/189] Installing libssh-0:0.12.0-1. 100% | 234.8 MiB/s | 721.2 KiB | 00m00s [148/189] Installing libcurl-0:8.20.0-2 100% | 254.6 MiB/s | 1.0 MiB | 00m00s [149/189] Installing elfutils-debuginfo 100% | 3.5 MiB/s | 86.1 KiB | 00m00s [150/189] Installing elfutils-0:0.195-1 100% | 93.0 MiB/s | 3.0 MiB | 00m00s [151/189] Installing binutils-0:2.46.50 100% | 288.5 MiB/s | 28.3 MiB | 00m00s [152/189] Installing gdb-minimal-0:17.1 100% | 218.4 MiB/s | 14.2 MiB | 00m00s [153/189] Installing debugedit-0:5.3-2. 100% | 8.8 MiB/s | 224.1 KiB | 00m00s [154/189] Installing curl-0:8.20.0-2.fc 100% | 14.8 MiB/s | 486.5 KiB | 00m00s [155/189] Installing rpm-0:6.0.1-5.fc45 100% | 58.0 MiB/s | 2.6 MiB | 00m00s [156/189] Installing cmake-srpm-macros- 100% | 0.0 B/s | 804.0 B | 00m00s [157/189] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [158/189] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [159/189] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [160/189] Installing tree-sitter-srpm-m 100% | 1.9 MiB/s | 9.6 KiB | 00m00s [161/189] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/189] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [163/189] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [164/189] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [165/189] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [166/189] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [167/189] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [168/189] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [169/189] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/189] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [171/189] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [172/189] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [173/189] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [174/189] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [175/189] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [176/189] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [177/189] Installing redhat-rpm-config- 100% | 92.7 MiB/s | 189.9 KiB | 00m00s [178/189] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [179/189] Installing rpm-build-0:6.0.1- 100% | 11.0 MiB/s | 303.7 KiB | 00m00s [180/189] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.5 KiB | 00m00s [181/189] Installing pyproject-srpm-mac 100% | 0.0 B/s | 3.8 KiB | 00m00s [182/189] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [183/189] Installing go-srpm-macros-0:3 100% | 61.6 MiB/s | 63.0 KiB | 00m00s [184/189] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [185/189] Installing python-srpm-macros 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [186/189] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.9 KiB | 00m00s [187/189] Installing which-0:2.23-4.fc4 100% | 3.3 MiB/s | 85.6 KiB | 00m00s [188/189] Installing shadow-utils-2:4.1 100% | 95.9 MiB/s | 4.0 MiB | 00m00s [189/189] Installing info-0:7.3-1.fc45. 100% | 55.1 KiB/s | 372.8 KiB | 00m07s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-2.fc45.noarch add-determinism-0.7.3-2.fc45.x86_64 alternatives-1.33-5.fc44.x86_64 ansible-srpm-macros-1-20.1.fc44.noarch audit-libs-4.1.4-1.fc45.x86_64 bash-5.3.9-3.fc44.x86_64 binutils-2.46.50-9.fc45.x86_64 build-reproducibility-srpm-macros-0.7.3-2.fc45.noarch bzip2-1.0.8-23.fc44.x86_64 bzip2-libs-1.0.8-23.fc44.x86_64 ca-certificates-2025.2.80_v9.0.304-7.fc45.noarch cmake-srpm-macros-4.3.0-1.fc45.noarch coreutils-9.11-2.fc45.x86_64 coreutils-common-9.11-2.fc45.x86_64 cpio-2.15-9.fc44.x86_64 crypto-policies-20251128-3.git19878fe.fc44.noarch curl-8.20.0-2.fc45.x86_64 cyrus-sasl-lib-2.1.28-35.fc44.x86_64 debugedit-5.3-2.fc45.x86_64 diffutils-3.12-5.fc44.x86_64 dwz-0.16-3.fc44.x86_64 ed-1.22.5-2.fc45.x86_64 efi-srpm-macros-6-6.fc44.noarch elfutils-0.195-1.fc45.x86_64 elfutils-debuginfod-client-0.195-1.fc45.x86_64 elfutils-libelf-0.195-1.fc45.x86_64 elfutils-libs-0.195-1.fc45.x86_64 erlang-srpm-macros-0.3.11-1.fc45.noarch fedora-gpg-keys-45-0.1.noarch fedora-release-45-0.8.noarch fedora-release-common-45-0.8.noarch fedora-release-identity-basic-45-0.8.noarch fedora-repos-45-0.1.noarch fedora-repos-rawhide-45-0.1.noarch file-5.47-2.fc45.x86_64 file-libs-5.47-2.fc45.x86_64 filesystem-3.18-56.fc45.x86_64 filesystem-srpm-macros-3.18-56.fc45.noarch findutils-4.10.0-7.fc44.x86_64 fonts-srpm-macros-5.0.0-3.fc45.noarch forge-srpm-macros-0.4.0-4.fc44.noarch fpc-srpm-macros-1.3-16.fc44.noarch gap-srpm-macros-2-2.fc44.noarch gawk-5.4.0-3.fc45.x86_64 gdb-minimal-17.1-5.fc45.x86_64 gdbm-libs-1.23-11.fc44.x86_64 ghc-srpm-macros-1.10-1.fc44.noarch glibc-2.43.9000-16.fc45.x86_64 glibc-common-2.43.9000-16.fc45.x86_64 glibc-gconv-extra-2.43.9000-16.fc45.x86_64 glibc-minimal-langpack-2.43.9000-16.fc45.x86_64 gmp-6.3.0-5.fc44.x86_64 gnat-srpm-macros-7-2.fc44.noarch gnome-srpm-macros-1.0-1.fc45.noarch gnulib-l10n-20241231-2.fc44.noarch gnupg2-2.4.9-16.fc45.x86_64 gnupg2-dirmngr-2.4.9-16.fc45.x86_64 gnupg2-gpg-agent-2.4.9-16.fc45.x86_64 gnupg2-gpgconf-2.4.9-16.fc45.x86_64 gnupg2-keyboxd-2.4.9-16.fc45.x86_64 gnupg2-verify-2.4.9-16.fc45.x86_64 gnutls-3.8.13-1.fc45.x86_64 go-srpm-macros-3.8.0-2.fc44.noarch gpg-pubkey-36f612dcf27f7d1a48a835e4dbfcf71c6d9f90a6-6786af3b gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-4.fc44.noarch grep-3.12-3.fc44.x86_64 gzip-1.14-2.fc44.x86_64 ima-evm-utils-libs-1.6.2-10.fc45.x86_64 info-7.3-1.fc45.x86_64 jansson-2.14-4.fc44.x86_64 java-srpm-macros-1-8.fc44.noarch json-c-0.18-8.fc44.x86_64 kernel-srpm-macros-1.0-29.fc45.noarch keyutils-libs-1.6.3-7.fc44.x86_64 krb5-libs-1.22.2-7.fc45.x86_64 libacl-2.3.2-6.fc44.x86_64 libarchive-3.8.7-1.fc45.x86_64 libassuan-2.5.7-5.fc44.x86_64 libattr-2.5.2-8.fc44.x86_64 libblkid-2.42.1-4.fc45.x86_64 libbrotli-1.2.0-3.fc44.x86_64 libcap-2.78-1.fc45.x86_64 libcap-ng-0.9.3-1.fc45.x86_64 libcbor-0.14.0-2.fc45.x86_64 libcom_err-1.47.4-1.fc45.x86_64 libcurl-8.20.0-2.fc45.x86_64 libeconf-0.7.9-3.fc44.x86_64 libevent-2.1.12-17.fc44.x86_64 libfdisk-2.42.1-4.fc45.x86_64 libffi-3.5.2-2.fc44.x86_64 libfido2-1.17.0-2.fc45.x86_64 libfsverity-1.7-1.fc45.x86_64 libgcc-16.1.1-2.fc45.x86_64 libgcrypt-1.12.2-1.fc45.x86_64 libgomp-16.1.1-2.fc45.x86_64 libgpg-error-1.61-1.fc45.x86_64 libidn2-2.3.8-3.fc44.x86_64 libksba-1.8.0-1.fc45.x86_64 liblastlog2-2.42.1-4.fc45.x86_64 libmount-2.42.1-4.fc45.x86_64 libnghttp2-1.69.0-1.fc45.x86_64 libnghttp3-1.15.0-1.fc44.x86_64 libpkgconf-2.5.1-1.fc45.x86_64 libpsl-0.21.5-7.fc44.x86_64 libselinux-3.10-1.fc44.x86_64 libselinux-utils-3.10-1.fc44.x86_64 libsemanage-3.10-1.fc44.x86_64 libsepol-3.10-1.fc44.x86_64 libsmartcols-2.42.1-4.fc45.x86_64 libssh-0.12.0-1.fc45.x86_64 libssh-config-0.12.0-1.fc45.noarch libstdc++-16.1.1-2.fc45.x86_64 libtasn1-4.21.0-1.fc45.x86_64 libtool-ltdl-2.5.4-10.fc44.x86_64 libunistring-1.1-11.fc44.x86_64 libusb1-1.0.30-1.fc45.x86_64 libuuid-2.42.1-4.fc45.x86_64 libverto-0.3.2-12.fc44.x86_64 libxcrypt-4.5.2-3.fc44.x86_64 libxml2-2.13.9-1.fc45.x86_64 libzstd-1.5.7-5.fc44.x86_64 linkdupes-0.7.3-2.fc45.x86_64 lua-libs-5.5.0-1.fc45.x86_64 lua-srpm-macros-1-17.fc44.noarch lz4-libs-1.10.0-4.fc44.x86_64 mpfr-4.2.2-3.fc44.x86_64 ncurses-base-6.6-2.fc45.noarch ncurses-libs-6.6-2.fc45.x86_64 nettle-3.10.1-3.fc44.x86_64 ngtcp2-1.22.1-1.fc45.x86_64 ngtcp2-crypto-ossl-1.22.1-1.fc45.x86_64 npth-1.8-4.fc44.x86_64 ocaml-srpm-macros-11-3.fc44.noarch openblas-srpm-macros-2-21.fc44.noarch openldap-2.6.13-1.fc45.x86_64 openssl-libs-3.5.6-1.fc45.x86_64 p11-kit-0.26.2-1.fc45.x86_64 p11-kit-trust-0.26.2-1.fc45.x86_64 package-notes-srpm-macros-0.17-3.fc45.noarch pam-libs-1.7.2-1.fc44.x86_64 patch-2.8-4.fc44.x86_64 pcre2-10.47-1.fc44.1.x86_64 pcre2-syntax-10.47-1.fc44.1.noarch perl-srpm-macros-1-61.fc44.noarch pkgconf-2.5.1-1.fc45.x86_64 pkgconf-m4-2.5.1-1.fc45.noarch pkgconf-pkg-config-2.5.1-1.fc45.x86_64 policycoreutils-3.10-3.fc45.x86_64 popt-1.19-10.fc44.x86_64 publicsuffix-list-dafsa-20260116-1.fc44.noarch pyproject-srpm-macros-1.22.2-1.fc45.noarch python-srpm-macros-3.14-12.fc45.noarch qt5-srpm-macros-5.15.18-2.fc44.noarch qt6-srpm-macros-6.11.1-1.fc45.noarch readline-8.3-4.fc44.x86_64 redhat-rpm-config-344-2.fc45.noarch redhat-systemd-presets-102-1.fc45.noarch redhat-systemd-presets-common-102-1.fc45.noarch rpm-6.0.1-5.fc45.x86_64 rpm-build-6.0.1-5.fc45.x86_64 rpm-build-libs-6.0.1-5.fc45.x86_64 rpm-libs-6.0.1-5.fc45.x86_64 rpm-plugin-selinux-6.0.1-5.fc45.x86_64 rpm-sequoia-1.10.2-2.fc45.x86_64 rpm-sign-libs-6.0.1-5.fc45.x86_64 rust-srpm-macros-28.4-3.fc44.noarch sed-4.10-1.fc45.x86_64 selinux-policy-45.3-1.fc45.noarch selinux-policy-targeted-45.3-1.fc45.noarch setup-2.15.0-29.fc45.noarch shadow-utils-4.19.3-2.fc45.x86_64 sqlite-libs-3.53.1-1.fc45.x86_64 systemd-libs-261~rc1-1.fc45.x86_64 systemd-standalone-sysusers-261~rc1-1.fc45.x86_64 tar-1.35-8.fc44.x86_64 tpm2-tss-4.1.3-9.fc44.x86_64 tree-sitter-srpm-macros-0.4.6-1.fc45.noarch unzip-6.0-69.fc44.x86_64 util-linux-2.42.1-4.fc45.x86_64 util-linux-core-2.42.1-4.fc45.x86_64 which-2.23-4.fc44.x86_64 xxhash-libs-0.8.3-4.fc44.x86_64 xz-5.8.3-1.fc45.x86_64 xz-libs-5.8.3-1.fc45.x86_64 zig-srpm-macros-1-8.fc44.noarch zip-3.0-45.fc44.x86_64 zlib-ng-compat-2.3.3-5.fc45.x86_64 zstd-1.5.7-5.fc44.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1779667200 Wrote: /builddir/build/SRPMS/freesurfer8-8.2.0-5.fc45.src.rpm RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1779760896.087886/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-89dzqgvs/freesurfer8/freesurfer8.spec) Config(child) 0 minutes 39 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/freesurfer8-8.2.0-5.fc45.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1779760896.087886/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1779760896.087886/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1779760896.087886/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.0.1-5.fc45.x86_64 rpm-sequoia-1.10.2-2.fc45.x86_64 dnf5-5.4.2.1-2.fc45.x86_64 dnf5-plugins-5.4.2.1-2.fc45.x86_64 Finish: chroot init Start: build phase for freesurfer8-8.2.0-5.fc45.src.rpm Start: build setup for freesurfer8-8.2.0-5.fc45.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1779667200 Wrote: /builddir/build/SRPMS/freesurfer8-8.2.0-5.fc45.src.rpm RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Updating and loading repositories: fedora 100% | 16.0 KiB/s | 26.0 KiB | 00m02s Copr repository 100% | 998.0 B/s | 1.5 KiB | 00m02s Repositories loaded. Package Arch Version Repository Size Installing: InsightToolkit5-devel x86_64 0:5.4.6-2.fc45 copr_base 28.3 MiB blas-devel x86_64 0:3.12.0-11.fc44 fedora 131.9 KiB cmake x86_64 0:4.3.0-1.fc45 fedora 40.5 MiB eigen3-devel noarch 0:5.0.1-3.fc44 fedora 9.5 MiB expat-devel x86_64 0:2.8.1-1.fc45 fedora 234.5 KiB freeglut-devel x86_64 0:3.8.0-2.fc44 fedora 2.3 MiB gcc-c++ x86_64 0:16.1.1-2.fc45 fedora 46.4 MiB gcc-gfortran x86_64 0:16.1.1-2.fc45 fedora 44.8 MiB gifticlib-devel x86_64 0:1.0.9-30.fc44 fedora 22.2 KiB lapack-devel x86_64 0:3.12.0-11.fc44 fedora 1.6 MiB libX11-devel x86_64 0:1.8.13-1.fc45 fedora 1.0 MiB libXi-devel x86_64 0:1.8.3-1.fc45 fedora 132.2 KiB libXmu-devel x86_64 0:1.2.1-5.fc44 fedora 66.2 KiB libXt-devel x86_64 0:1.3.1-4.fc44 fedora 1.6 MiB libjpeg-turbo-devel x86_64 0:3.1.4.1-1.fc45 fedora 354.2 KiB libpng-devel x86_64 2:1.6.58-1.fc45 fedora 906.0 KiB libtiff-devel x86_64 0:4.7.1-2.fc44 fedora 805.2 KiB libxml2-devel x86_64 0:2.13.9-1.fc45 fedora 3.2 MiB mesa-libGL-devel x86_64 0:26.1.1-1.fc45 fedora 80.8 KiB ninja-build x86_64 0:1.13.2-2.fc44 fedora 496.5 KiB openssl-devel x86_64 1:3.5.6-1.fc45 fedora 4.5 MiB petsc-devel x86_64 0:3.25.1-1.fc45 fedora 12.7 MiB python3-devel x86_64 0:3.14.5-1.fc45 fedora 2.0 MiB qt6-qtbase-devel x86_64 0:6.11.1-1.fc45 fedora 22.9 MiB tetgen-devel x86_64 0:1.5.0-31.fc44 fedora 131.6 KiB vtk-devel x86_64 0:9.6.2-5.fc45 copr_base 31.4 MiB xxd x86_64 2:9.2.506-2.fc45 fedora 33.2 KiB zlib-ng-compat-devel x86_64 0:2.3.3-5.fc45 fedora 107.0 KiB Installing dependencies: CharLS x86_64 0:2.4.3-2.fc45 fedora 339.9 KiB InsightToolkit5 x86_64 0:5.4.6-2.fc45 copr_base 39.7 MiB InsightToolkit5-vtk x86_64 0:5.4.6-2.fc45 copr_base 1.1 MiB InsightToolkit5-vtk-devel x86_64 0:5.4.6-2.fc45 copr_base 22.4 KiB PEGTL-devel x86_64 0:2.8.3-15.fc44 fedora 678.1 KiB SDL3 x86_64 0:3.4.8-1.fc45 fedora 3.2 MiB SuperLU x86_64 0:7.0.1-4.fc44 fedora 490.1 KiB abattis-cantarell-vf-fonts noarch 0:0.301-17.fc44 fedora 192.7 KiB abseil-cpp x86_64 0:20260107.1-1.fc45 fedora 2.6 MiB adwaita-cursor-theme noarch 0:50.0-1.fc45 fedora 11.4 MiB adwaita-icon-theme noarch 0:50.0-1.fc45 fedora 1.1 MiB adwaita-icon-theme-legacy noarch 0:46.2-7.fc45 fedora 2.1 MiB annobin-docs noarch 0:13.17-1.fc45 fedora 99.3 KiB annobin-plugin-gcc x86_64 0:13.17-1.fc45 fedora 707.3 KiB armadillo x86_64 0:12.8.1-11.fc45 fedora 81.9 KiB arpack x86_64 0:3.9.1-9.fc44 fedora 629.6 KiB at-spi2-atk x86_64 0:2.60.3-1.fc45 fedora 284.1 KiB at-spi2-core x86_64 0:2.60.3-1.fc45 fedora 1.6 MiB atk x86_64 0:2.60.3-1.fc45 fedora 252.5 KiB autoconf noarch 0:2.73-1.fc45 fedora 2.9 MiB automake noarch 0:1.18.1-4.fc44 fedora 1.8 MiB avahi-glib x86_64 0:0.9~rc2-8.fc44 fedora 19.5 KiB avahi-libs x86_64 0:0.9~rc2-8.fc44 fedora 179.2 KiB blas x86_64 0:3.12.0-11.fc44 fedora 1.4 MiB blas64 x86_64 0:3.12.0-11.fc44 fedora 1.0 MiB blas64_ x86_64 0:3.12.0-11.fc44 fedora 1.0 MiB blosc x86_64 0:1.21.6-10.fc44 fedora 126.1 KiB boost x86_64 0:1.90.0-7.fc45 fedora 1.3 KiB boost-atomic x86_64 0:1.90.0-7.fc45 fedora 20.7 KiB boost-charconv x86_64 0:1.90.0-7.fc45 fedora 161.5 KiB boost-chrono x86_64 0:1.90.0-7.fc45 fedora 41.3 KiB boost-cobalt x86_64 0:1.90.0-7.fc45 fedora 634.3 KiB boost-container x86_64 0:1.90.0-7.fc45 fedora 69.3 KiB boost-context x86_64 0:1.90.0-7.fc45 fedora 12.3 KiB boost-contract x86_64 0:1.90.0-7.fc45 fedora 119.0 KiB boost-coroutine x86_64 0:1.90.0-7.fc45 fedora 24.9 KiB boost-date-time x86_64 0:1.90.0-7.fc45 fedora 12.1 KiB boost-devel x86_64 0:1.90.0-7.fc45 fedora 142.7 MiB boost-fiber x86_64 0:1.90.0-7.fc45 fedora 86.9 KiB boost-filesystem x86_64 0:1.90.0-7.fc45 fedora 159.7 KiB boost-graph x86_64 0:1.90.0-7.fc45 fedora 370.6 KiB boost-iostreams x86_64 0:1.90.0-7.fc45 fedora 90.4 KiB boost-json x86_64 0:1.90.0-7.fc45 fedora 372.9 KiB boost-locale x86_64 0:1.90.0-7.fc45 fedora 695.0 KiB boost-log x86_64 0:1.90.0-7.fc45 fedora 1.5 MiB boost-math x86_64 0:1.90.0-7.fc45 fedora 596.1 KiB boost-nowide x86_64 0:1.90.0-7.fc45 fedora 24.7 KiB boost-numpy3 x86_64 0:1.90.0-7.fc45 fedora 57.5 KiB boost-process x86_64 0:1.90.0-7.fc45 fedora 69.9 KiB boost-program-options x86_64 0:1.90.0-7.fc45 fedora 284.6 KiB boost-python3 x86_64 0:1.90.0-7.fc45 fedora 261.9 KiB boost-random x86_64 0:1.90.0-7.fc45 fedora 29.4 KiB boost-regex x86_64 0:1.90.0-7.fc45 fedora 298.7 KiB boost-serialization x86_64 0:1.90.0-7.fc45 fedora 453.1 KiB boost-stacktrace x86_64 0:1.90.0-7.fc45 fedora 103.0 KiB boost-test x86_64 0:1.90.0-7.fc45 fedora 647.6 KiB boost-thread x86_64 0:1.90.0-7.fc45 fedora 127.7 KiB boost-timer x86_64 0:1.90.0-7.fc45 fedora 24.8 KiB boost-type_erasure x86_64 0:1.90.0-7.fc45 fedora 62.0 KiB boost-url x86_64 0:1.90.0-7.fc45 fedora 335.2 KiB boost-wave x86_64 0:1.90.0-7.fc45 fedora 904.3 KiB brotli x86_64 0:1.2.0-3.fc44 fedora 33.4 KiB brotli-devel x86_64 0:1.2.0-3.fc44 fedora 65.9 KiB bubblewrap x86_64 0:0.11.0-4.fc44 fedora 134.8 KiB bzip2-devel x86_64 0:1.0.8-23.fc44 fedora 309.8 KiB cairo x86_64 0:1.18.4-6.fc44 fedora 1.8 MiB cairo-devel x86_64 0:1.18.4-6.fc44 fedora 2.3 MiB cairo-gobject x86_64 0:1.18.4-6.fc44 fedora 31.0 KiB cfitsio x86_64 0:4.6.4-1.fc45 fedora 1.9 MiB cgnslib x86_64 0:4.5.1-4.fc45 fedora 1.3 MiB cgnslib-common noarch 0:4.5.1-4.fc45 fedora 508.9 KiB cgnslib-devel x86_64 0:4.5.1-4.fc45 fedora 159.7 KiB cgnslib-libs x86_64 0:4.5.1-4.fc45 fedora 948.5 KiB cmake-data noarch 0:4.3.0-1.fc45 fedora 9.4 MiB cmake-filesystem x86_64 0:4.3.0-1.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-1.fc45 fedora 8.4 KiB colord-libs x86_64 0:1.4.8-4.fc44 fedora 830.4 KiB cpp x86_64 0:16.1.1-2.fc45 fedora 42.1 MiB cups-filesystem noarch 1:2.4.19-2.fc45 fedora 0.0 B cups-libs x86_64 1:2.4.19-2.fc45 fedora 638.7 KiB dbus x86_64 1:1.16.2-1.fc45 fedora 0.0 B dbus-libs x86_64 1:1.16.2-1.fc45 fedora 357.5 KiB dcmtk x86_64 0:3.7.0-1.fc45 copr_base 41.4 MiB dcmtk-devel x86_64 0:3.7.0-1.fc45 copr_base 14.7 MiB default-fonts-core-sans noarch 0:4.3-2.fc45 fedora 11.9 KiB double-conversion x86_64 0:3.4.0-3.fc44 fedora 101.8 KiB double-conversion-devel x86_64 0:3.4.0-3.fc44 fedora 103.7 KiB duktape x86_64 0:2.7.0-11.fc44 fedora 623.6 KiB emacs-filesystem x86_64 1:30.2-2.fc44 fedora 0.0 B expat x86_64 0:2.8.1-1.fc45 fedora 327.4 KiB fftw x86_64 0:3.3.10-17.fc44 fedora 181.4 KiB fftw-devel x86_64 0:3.3.10-17.fc44 fedora 283.1 KiB fftw-libs x86_64 0:3.3.10-17.fc44 fedora 0.0 B fftw-libs-double x86_64 0:3.3.10-17.fc44 fedora 3.4 MiB fftw-libs-long x86_64 0:3.3.10-17.fc44 fedora 1.5 MiB fftw-libs-quad x86_64 0:3.3.10-17.fc44 fedora 2.5 MiB fftw-libs-single x86_64 0:3.3.10-17.fc44 fedora 3.6 MiB flexiblas x86_64 0:3.5.0-2.fc44 fedora 38.0 KiB flexiblas-netlib x86_64 0:3.5.0-2.fc44 fedora 16.3 MiB flexiblas-netlib64 x86_64 0:3.5.0-2.fc44 fedora 16.5 MiB flexiblas-openblas-openmp x86_64 0:3.5.0-2.fc44 fedora 39.1 KiB flexiblas-openblas-openmp64 x86_64 0:3.5.0-2.fc44 fedora 39.1 KiB fmt x86_64 0:11.2.0-4.fc44 fedora 274.9 KiB fmt-devel x86_64 0:11.2.0-4.fc44 fedora 570.1 KiB fontconfig x86_64 0:2.17.0-4.fc44 fedora 776.4 KiB fontconfig-devel x86_64 0:2.17.0-4.fc44 fedora 123.6 KiB fonts-filesystem noarch 1:5.0.0-3.fc45 fedora 0.0 B freeglut x86_64 0:3.8.0-2.fc44 fedora 485.2 KiB freetype x86_64 0:2.14.3-1.fc45 fedora 918.3 KiB freetype-devel x86_64 0:2.14.3-1.fc45 fedora 8.6 MiB freexl x86_64 0:2.0.0-21.fc45 fedora 93.2 KiB fribidi x86_64 0:1.0.16-4.fc44 fedora 190.0 KiB gcc x86_64 0:16.1.1-2.fc45 fedora 120.8 MiB gcc-plugin-annobin x86_64 0:16.1.1-2.fc45 fedora 57.0 KiB gdal-devel x86_64 0:3.12.4-2.fc45 fedora 1.7 MiB gdal-libs x86_64 0:3.12.4-2.fc45 fedora 34.5 MiB gdcm x86_64 0:3.0.24-17.fc44 fedora 8.2 MiB gdcm-applications x86_64 0:3.0.24-17.fc44 fedora 1.1 MiB gdcm-devel x86_64 0:3.0.24-17.fc44 fedora 2.6 MiB gdk-pixbuf2 x86_64 0:2.44.6-1.fc45 fedora 2.6 MiB gdk-pixbuf2-devel x86_64 0:2.44.6-1.fc45 fedora 2.2 MiB geos x86_64 0:3.14.1-3.fc45 fedora 4.3 MiB gettext x86_64 0:1.0-1.fc45 fedora 17.8 MiB gettext-common-devel noarch 0:1.0-1.fc45 fedora 596.2 KiB gettext-devel x86_64 0:1.0-1.fc45 fedora 1.4 MiB gettext-envsubst x86_64 0:1.0-1.fc45 fedora 74.6 KiB gettext-libs x86_64 0:1.0-1.fc45 fedora 2.3 MiB gettext-runtime x86_64 0:1.0-1.fc45 fedora 716.0 KiB giflib x86_64 0:6.1.3-2.fc45 fedora 122.1 KiB gifticlib x86_64 0:1.0.9-30.fc44 fedora 228.8 KiB glew-devel x86_64 0:2.2.0-12.fc44 fedora 1.8 MiB glfw x86_64 1:3.4-7.fc45 fedora 386.0 KiB glib-networking x86_64 0:2.80.1-9.fc45 fedora 750.4 KiB glib2 x86_64 0:2.88.1-1.fc45 fedora 15.3 MiB glib2-devel x86_64 0:2.88.1-1.fc45 fedora 15.8 MiB glibc-devel x86_64 0:2.43.9000-16.fc45 fedora 2.3 MiB glx-utils x86_64 0:9.0.0-11.fc44 fedora 418.0 KiB glycin-devel x86_64 0:2.1.1-1.fc45 fedora 126.2 KiB glycin-libs x86_64 0:2.1.1-1.fc45 fedora 4.3 MiB glycin-loaders x86_64 0:2.1.1-1.fc45 fedora 14.0 MiB google-noto-fonts-common noarch 0:20260401-1.fc45 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260401-1.fc45 fedora 1.4 MiB gpgme x86_64 0:2.0.1-4.fc45 fedora 617.8 KiB gpgmepp x86_64 1:2.0.0-1.fc45 fedora 613.9 KiB graphite2 x86_64 0:1.3.14-20.fc44 fedora 191.5 KiB graphite2-devel x86_64 0:1.3.14-20.fc44 fedora 49.3 KiB groff-base x86_64 0:1.24.0-1.fc45 fedora 4.2 MiB gsettings-desktop-schemas x86_64 0:50.1-1.fc45 fedora 6.1 MiB gtk-update-icon-cache x86_64 0:3.24.52-3.fc45 fedora 62.0 KiB gtk3 x86_64 0:3.24.52-3.fc45 fedora 22.8 MiB harfbuzz x86_64 0:14.2.0-1.fc45 fedora 2.8 MiB harfbuzz-cairo x86_64 0:14.2.0-1.fc45 fedora 48.0 KiB harfbuzz-devel x86_64 0:14.2.0-1.fc45 fedora 6.4 MiB harfbuzz-gpu x86_64 0:14.2.0-1.fc45 fedora 176.3 KiB harfbuzz-icu x86_64 0:14.2.0-1.fc45 fedora 15.3 KiB harfbuzz-raster x86_64 0:14.2.0-1.fc45 fedora 104.3 KiB harfbuzz-vector x86_64 0:14.2.0-1.fc45 fedora 113.1 KiB hdf-libs x86_64 0:4.3.0-6.fc45 fedora 706.8 KiB hdf5 x86_64 0:2.1.1-2.fc45 fedora 7.4 MiB hdf5-devel x86_64 0:2.1.1-2.fc45 fedora 3.5 MiB hicolor-icon-theme noarch 0:0.18-3.fc44 fedora 72.4 KiB highway x86_64 0:1.3.0-2.fc44 fedora 5.5 MiB hwdata noarch 0:0.407-1.fc45 fedora 9.9 MiB imath x86_64 0:3.1.12-6.fc44 fedora 379.6 KiB jbigkit-libs x86_64 0:2.1-33.fc44 fedora 117.2 KiB json-devel x86_64 0:3.12.0-2.fc44 fedora 1.0 MiB json-glib x86_64 0:1.10.8-5.fc45 fedora 596.2 KiB jsoncpp x86_64 0:1.9.6-3.fc44 fedora 285.6 KiB jsoncpp-devel x86_64 0:1.9.6-3.fc44 fedora 82.2 KiB kernel-headers x86_64 0:7.1.0-0.rc3.6916d5703ddf.29.fc45 fedora 6.9 MiB keyutils-libs-devel x86_64 0:1.6.3-7.fc44 fedora 48.2 KiB krb5-devel x86_64 0:1.22.2-7.fc45 fedora 709.9 KiB lapack x86_64 0:3.12.0-11.fc44 fedora 16.4 MiB lapack64 x86_64 0:3.12.0-11.fc44 fedora 9.8 MiB lapack64_ x86_64 0:3.12.0-11.fc44 fedora 9.8 MiB lcms2 x86_64 0:2.16-7.fc44 fedora 445.7 KiB lcms2-devel x86_64 0:2.16-7.fc44 fedora 135.7 KiB libGLEW x86_64 0:2.2.0-12.fc44 fedora 760.2 KiB libICE x86_64 0:1.1.2-4.fc44 fedora 198.3 KiB libICE-devel x86_64 0:1.1.2-4.fc44 fedora 261.8 KiB libSM x86_64 0:1.2.5-4.fc44 fedora 100.9 KiB libSM-devel x86_64 0:1.2.5-4.fc44 fedora 18.8 KiB libX11 x86_64 0:1.8.13-1.fc45 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KiB libXtst x86_64 0:1.2.5-4.fc44 fedora 33.4 KiB libXxf86vm x86_64 0:1.1.6-4.fc44 fedora 25.1 KiB libaec x86_64 0:1.1.7-1.fc45 fedora 92.0 KiB libaec-devel x86_64 0:1.1.7-1.fc45 fedora 22.6 KiB libaom x86_64 0:3.13.3-2.fc45 fedora 5.1 MiB libarchive-devel x86_64 0:3.8.7-1.fc45 fedora 183.0 KiB libarrow x86_64 0:23.0.1-2.fc45 fedora 14.1 MiB libarrow-acero-libs x86_64 0:23.0.1-2.fc45 fedora 1.4 MiB libarrow-compute-libs x86_64 0:23.0.1-2.fc45 fedora 14.0 MiB libarrow-dataset-libs x86_64 0:23.0.1-2.fc45 fedora 1.5 MiB libarrow-doc noarch 0:23.0.1-2.fc45 fedora 119.1 KiB libatomic x86_64 0:16.1.1-2.fc45 fedora 45.6 KiB libb2 x86_64 0:0.98.1-15.fc44 fedora 41.9 KiB libblkid-devel x86_64 0:2.42.1-4.fc45 fedora 45.0 KiB libcloudproviders x86_64 0:0.4.0-1.fc45 fedora 124.4 KiB libcom_err-devel x86_64 0:1.47.4-1.fc45 fedora 16.7 KiB libcurl-devel x86_64 0:8.20.0-2.fc45 fedora 1.4 MiB libdatrie x86_64 0:0.2.14-2.fc44 fedora 61.7 KiB libdav1d x86_64 0:1.5.3-1.fc45 fedora 1.7 MiB libdecor x86_64 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fedora 606.8 KiB rhash x86_64 0:1.4.5-4.fc44 fedora 354.8 KiB sdl2-compat x86_64 0:2.32.68-1.fc45 fedora 412.3 KiB shared-mime-info x86_64 0:2.4-11.fc45 fedora 5.2 MiB snappy x86_64 0:1.2.2-4.fc44 fedora 79.9 KiB spirv-tools-libs x86_64 0:2026.1-1.fc45 fedora 6.1 MiB sqlite x86_64 0:3.53.1-1.fc45 fedora 2.0 MiB sqlite-devel x86_64 0:3.53.1-1.fc45 fedora 712.4 KiB svt-av1-libs x86_64 0:3.1.2-2.fc44 fedora 5.6 MiB sysprof-capture-devel x86_64 0:50.0-1.fc45 fedora 813.8 KiB tcl8 x86_64 1:8.6.18-1.fc45 fedora 4.2 MiB tetgen x86_64 0:1.5.0-31.fc44 fedora 648.1 KiB thrift x86_64 0:0.20.0-9.fc44 fedora 5.6 MiB tk8 x86_64 1:8.6.18-1.fc45 fedora 3.2 MiB tslib x86_64 0:1.24-2.fc44 fedora 402.7 KiB tzdata noarch 0:2026b-1.fc45 fedora 1.2 MiB unixODBC x86_64 0:2.3.14-6.fc45 fedora 1.0 MiB uriparser x86_64 0:1.0.2-1.fc45 fedora 188.4 KiB utf8cpp-devel noarch 0:4.1.1-1.fc45 fedora 138.8 KiB utf8proc x86_64 0:2.11.3-2.fc44 fedora 373.5 KiB vim-filesystem noarch 2:9.2.506-2.fc45 fedora 40.0 B vtk x86_64 0:9.6.2-5.fc45 copr_base 224.5 MiB vtk-qt x86_64 0:9.6.2-5.fc45 copr_base 1.4 MiB vulkan-headers noarch 0:1.4.341.0-1.fc45 fedora 36.1 MiB vulkan-loader x86_64 0:1.4.341.0-1.fc45 fedora 577.6 KiB vulkan-loader-devel x86_64 0:1.4.341.0-1.fc45 fedora 8.0 KiB wayland-devel x86_64 0:1.24.0-3.fc44 fedora 691.8 KiB xcb-util x86_64 0:0.4.1-9.fc44 fedora 26.1 KiB xcb-util-cursor x86_64 0:0.1.6-2.fc44 fedora 23.1 KiB xcb-util-image x86_64 0:0.4.1-9.fc44 fedora 22.0 KiB xcb-util-keysyms x86_64 0:0.4.1-9.fc44 fedora 16.6 KiB xcb-util-renderutil x86_64 0:0.3.10-9.fc44 fedora 24.2 KiB xcb-util-wm x86_64 0:0.4.2-9.fc44 fedora 81.0 KiB xerces-c x86_64 0:3.3.0-9.fc44 fedora 3.9 MiB xkeyboard-config noarch 0:2.47-1.fc45 fedora 6.4 MiB xml-common noarch 0:0.6.3-68.fc44 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-2.fc44 fedora 1.8 MiB xprop x86_64 0:1.2.8-5.fc44 fedora 54.5 KiB xz-devel x86_64 1:5.8.3-1.fc45 fedora 258.8 KiB Transaction Summary: Installing: 537 packages Total size of inbound packages is 543 MiB. Need to download 543 MiB. After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B). 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Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1779667200 Wrote: /builddir/build/SRPMS/freesurfer8-8.2.0-5.fc45.src.rpm RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 Updating and loading repositories: fedora 100% | 146.0 KiB/s | 26.0 KiB | 00m00s Copr repository 100% | 69.5 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "InsightToolkit5-devel-5.4.6-2.fc45.x86_64" is already installed. Package "blas-devel-3.12.0-11.fc44.x86_64" is already installed. Package "cmake-4.3.0-1.fc45.x86_64" is already installed. Package "eigen3-devel-5.0.1-3.fc44.noarch" is already installed. Package "expat-devel-2.8.1-1.fc45.x86_64" is already installed. Package "freeglut-devel-3.8.0-2.fc44.x86_64" is already installed. Package "gcc-c++-16.1.1-2.fc45.x86_64" is already installed. Package "gcc-gfortran-16.1.1-2.fc45.x86_64" is already installed. Package "gifticlib-devel-1.0.9-30.fc44.x86_64" is already installed. Package "lapack-devel-3.12.0-11.fc44.x86_64" is already installed. Package "libX11-devel-1.8.13-1.fc45.x86_64" is already installed. Package "libXi-devel-1.8.3-1.fc45.x86_64" is already installed. Package "libXmu-devel-1.2.1-5.fc44.x86_64" is already installed. Package "libXt-devel-1.3.1-4.fc44.x86_64" is already installed. Package "libjpeg-turbo-devel-3.1.4.1-1.fc45.x86_64" is already installed. Package "libpng-devel-2:1.6.58-1.fc45.x86_64" is already installed. Package "libtiff-devel-4.7.1-2.fc44.x86_64" is already installed. Package "libxml2-devel-2.13.9-1.fc45.x86_64" is already installed. Package "mesa-libGL-devel-26.1.1-1.fc45.x86_64" is already installed. Package "ninja-build-1.13.2-2.fc44.x86_64" is already installed. Package "openssl-devel-1:3.5.6-1.fc45.x86_64" is already installed. Package "petsc-devel-3.25.1-1.fc45.x86_64" is already installed. Package "python3-devel-3.14.5-1.fc45.x86_64" is already installed. Package "qt6-qtbase-devel-6.11.1-1.fc45.x86_64" is already installed. Package "tetgen-devel-1.5.0-31.fc44.x86_64" is already installed. Package "vtk-devel-9.6.2-5.fc45.x86_64" is already installed. Package "xxd-2:9.2.506-2.fc45.x86_64" is already installed. Package "zlib-ng-compat-devel-2.3.3-5.fc45.x86_64" is already installed. Nothing to do. Finish: build setup for freesurfer8-8.2.0-5.fc45.src.rpm Start: rpmbuild freesurfer8-8.2.0-5.fc45.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 warning: bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 warning: bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 setting SOURCE_DATE_EPOCH=1779667200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.se9Fgi Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.cNj5p2 + umask 022 + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + rm -rf freesurfer-8.2.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/freesurfer-8.2.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd freesurfer-8.2.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/freesurfer-fedora-host-os.patch + /usr/bin/patch -p0 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i 's/COND_ExtractConditions(CTNBOOLEAN(\*callback) ())/COND_ExtractConditions(CTNBOOLEAN(*callback) (CONDITION, const char*))/' packages/dicom/condition.h + sed -i 's/COND_EstablishCallback(void (\*callback) ())/COND_EstablishCallback(void (*callback) (CONDITION, const char*))/' packages/dicom/condition.h + sed -i 's/LST_Sort(LST_HEAD \*\* list, size_t nodeSize, int (\*compare) ())/LST_Sort(LST_HEAD ** list, size_t nodeSize, int (*compare) (LST_NODE*, LST_NODE*))/' packages/dicom/lst.h + sed -i 's/add_compile_options(-w -fPIC)/add_compile_options(-w -fPIC -std=gnu89)/' packages/CMakeLists.txt + sed -i '/^ glut$/d;/^ gifti$/d;/^ tetgen$/d' packages/CMakeLists.txt + sed -i '/^ xml2$/d;/^ expat$/d' packages/CMakeLists.txt + sed -i 's|${CMAKE_SOURCE_DIR}/packages/xml2|/usr/include/libxml2|' utils/CMakeLists.txt + sed -i $'/target_link_libraries(utils/,/)/{\n s/\\bexpat\\b/-lexpat/\n}' utils/CMakeLists.txt + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i '/target_link_libraries/s/\bxml2\b/-lxml2/g' '{}' + + sed -i '1i #include ' utils/fsPrintHelp.cpp + sed -i s/Qt::WA_NoBackground/Qt::WA_NoSystemBackground/g freeview/GenericRenderView.cpp + sed -i 's/QVTKOpenGLWidget\.h/QVTKOpenGLNativeWidget.h/' freeview/main.cpp + sed -i s/QVTKOpenGLWidget::defaultFormat/QVTKOpenGLNativeWidget::defaultFormat/ freeview/main.cpp + sed -i /QVTK9/d freeview/CMakeLists.txt + sed -i $'/^public:/a\\\n /* VTK 9.5 compat: forward old method names to new camelCase names */\\\n vtkRenderWindow* GetRenderWindow() { return renderWindow(); }\\\n template void SetRenderWindow(T w) { setRenderWindow(w); }' freeview/GenericRenderView.h + sed -i 's/set(QT_LIBRARIES ${QT_LIBRARIES} Qt5::X11Extras)/if(Qt5_DIR)\n set(QT_LIBRARIES ${QT_LIBRARIES} Qt5::X11Extras)\n endif()/' freeview/CMakeLists.txt + find . -name CMakeLists.txt -exec sed -i /install_tarball/d '{}' + ++ grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/Annotation2D.cpp freeview/BinaryTreeEdge.cpp freeview/BinaryTreeNode.cpp freeview/BinaryTreeView.cpp freeview/BrushProperty.cpp freeview/BusyIndicator.cpp freeview/ColorTableItem.cpp freeview/CommandEdit.cpp freeview/Contour2D.cpp freeview/Cursor2D.cpp freeview/Cursor3D.cpp freeview/CursorFactory.cpp freeview/DialogAbout.cpp freeview/DialogAddPointSetStat.cpp freeview/DialogControlPointComment.cpp freeview/DialogCropVolume.cpp freeview/DialogCustomFill.cpp freeview/DialogGifMaker.cpp freeview/DialogGradientFilter.cpp freeview/DialogLabelStats.cpp freeview/DialogLabelStatsInRange.cpp freeview/DialogLineProfile.cpp freeview/DialogLoadConnectome.cpp freeview/DialogLoadDTI.cpp freeview/DialogLoadFCD.cpp freeview/DialogLoadODF.cpp freeview/DialogLoadPointSet.cpp freeview/DialogLoadSurface.cpp freeview/DialogLoadSurfaceOverlay.cpp freeview/DialogLoadTransform.cpp freeview/DialogLoadVolume.cpp freeview/DialogMovePoint.cpp freeview/DialogNewAnnotation.cpp freeview/DialogNewPointSet.cpp freeview/DialogNewROI.cpp freeview/DialogNewVolume.cpp freeview/DialogPreferences.cpp freeview/DialogReloadLayer.cpp freeview/DialogReplaceLabel.cpp freeview/DialogRepositionSurface.cpp freeview/DialogSaveAllVolumes.cpp freeview/DialogSavePointSet.cpp freeview/DialogSaveScreenshot.cpp freeview/DialogSaveVolume.cpp freeview/DialogScreenshotOverlay.cpp freeview/DialogSelectSplines.cpp freeview/DialogSetCamera.cpp freeview/DialogSmoothSurface.cpp freeview/DialogSurfaceLabelOperations.cpp freeview/DialogThresholdFilter.cpp freeview/DialogThresholdVolume.cpp freeview/DialogTransformSurface.cpp freeview/DialogTransformVolume.cpp freeview/DialogVolumeFilter.cpp freeview/DialogVolumeSegmentation.cpp freeview/DialogWayPointsAngle.cpp freeview/DialogWriteMovieFrames.cpp freeview/FSGroupDescriptor.cpp freeview/FSLabel.cpp freeview/FSPointSet.cpp freeview/FSSurface.cpp freeview/FSTrack.cpp freeview/FSVolume.cpp freeview/FloatingStatusBar.cpp freeview/FlowLayout.cpp freeview/GenericRenderView.cpp freeview/GeoSWorker.cpp freeview/GifWriterWrapper.cpp freeview/InfoTreeWidget.cpp freeview/Interactor.cpp freeview/Interactor2D.cpp freeview/Interactor2DMeasure.cpp freeview/Interactor2DNavigate.cpp freeview/Interactor2DPointSetEdit.cpp freeview/Interactor2DROIEdit.cpp freeview/Interactor2DVolumeCrop.cpp freeview/Interactor2DVolumeEdit.cpp freeview/Interactor2DVoxelEdit.cpp freeview/Interactor3D.cpp freeview/Interactor3DMeasure.cpp freeview/Interactor3DNavigate.cpp freeview/Interactor3DPathEdit.cpp freeview/Interactor3DPointSetEdit.cpp freeview/Interactor3DROIEdit.cpp freeview/Interactor3DVolumeCrop.cpp freeview/Json.cpp freeview/LUTDataHolder.cpp freeview/LabelTreeWidget.cpp freeview/Layer.cpp freeview/LayerCollection.cpp freeview/LayerConnectomeMatrix.cpp freeview/LayerDTI.cpp freeview/LayerEditRef.cpp freeview/LayerEditable.cpp freeview/LayerFCD.cpp freeview/LayerFCDWorkerThread.cpp freeview/LayerLandmarks.cpp freeview/LayerLineProfile.cpp freeview/LayerMRI.cpp freeview/LayerMRIWorkerThread.cpp freeview/LayerODF.cpp freeview/LayerPLabel.cpp freeview/LayerPointSet.cpp freeview/LayerProperty.cpp freeview/LayerPropertyConnectomeMatrix.cpp freeview/LayerPropertyDTI.cpp freeview/LayerPropertyFCD.cpp freeview/LayerPropertyLineProfile.cpp freeview/LayerPropertyMRI.cpp freeview/LayerPropertyODF.cpp freeview/LayerPropertyPointSet.cpp freeview/LayerPropertyROI.cpp freeview/LayerPropertySurface.cpp freeview/LayerPropertyTrack.cpp freeview/LayerROI.cpp freeview/LayerSurface.cpp freeview/LayerTrack.cpp freeview/LayerTreeWidget.cpp freeview/LayerVolumeBase.cpp freeview/LayerVolumeTrack.cpp freeview/LivewireTool.cpp freeview/MainApplication.cpp freeview/MainWindow.cpp freeview/MyCmdLineParser.cpp freeview/MyUtils.cpp freeview/MyVTKUtils.cpp freeview/PanelAllLayers.cpp freeview/PanelConnectomeMatrix.cpp freeview/PanelFCD.cpp freeview/PanelLayer.cpp freeview/PanelODF.cpp freeview/PanelPointSet.cpp freeview/PanelROI.cpp freeview/PanelSurface.cpp freeview/PanelTrack.cpp freeview/PanelVolume.cpp freeview/ProgressCallback.cpp freeview/Region2D.cpp freeview/Region2DLine.cpp freeview/Region2DPolyline.cpp freeview/Region2DRectangle.cpp freeview/Region3D.cpp freeview/RenderView.cpp freeview/RenderView2D.cpp freeview/RenderView3D.cpp freeview/ScribblePromptWorker.cpp freeview/SplineTreeWidget.cpp freeview/SurfaceAnnotation.cpp freeview/SurfaceLabel.cpp freeview/SurfaceOverlay.cpp freeview/SurfaceOverlayProperty.cpp freeview/SurfacePath.cpp freeview/SurfaceROI.cpp freeview/SurfaceRegion.cpp freeview/SurfaceRegionGroups.cpp freeview/SurfaceSpline.cpp freeview/TermWidget.cpp freeview/ThreadBuildContour.cpp freeview/ThreadIOWorker.cpp freeview/ToolWindowEdit.cpp freeview/ToolWindowLesionPopup.cpp freeview/ToolWindowMeasure.cpp freeview/ToolWindowROIEdit.cpp freeview/TorchScriptModule.cpp freeview/Track.cpp freeview/TrackData.cpp freeview/TrackGroup.cpp freeview/UIUpdateHelper.cpp freeview/VolumeCropper.cpp freeview/VolumeFilter.cpp freeview/VolumeFilterBoundary.cpp freeview/VolumeFilterClose.cpp freeview/VolumeFilterConvolve.cpp freeview/VolumeFilterDilate.cpp freeview/VolumeFilterErode.cpp freeview/VolumeFilterGradient.cpp freeview/VolumeFilterMean.cpp freeview/VolumeFilterMedian.cpp freeview/VolumeFilterOpen.cpp freeview/VolumeFilterOptimal.cpp freeview/VolumeFilterSobel.cpp freeview/VolumeFilterThreshold.cpp freeview/VolumeFilterWorkerThread.cpp freeview/WidgetGroupPlot.cpp freeview/WidgetHistogram.cpp freeview/WidgetTimeCoursePlot.cpp freeview/WindowConfigureOverlay.cpp freeview/WindowEditAnnotation.cpp freeview/WindowGroupPlot.cpp freeview/WindowLayerInfo.cpp freeview/WindowQuickReference.cpp freeview/WindowTimeCourse.cpp freeview/main.cpp freeview/qtcolorpicker.cpp freeview/vtkSimpleLabelEdgeFilter.cpp freeview/vtkSimpleLabelEdgeFilter3D.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/FSGroupDescriptor.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/FSGroupDescriptor.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/FSLabel.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/FSLabel.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/FSPointSet.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/FSPointSet.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/FSSurface.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/FSSurface.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/FSTrack.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/FSTrack.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/FSVolume.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/FSVolume.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/GenericRenderView.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/GenericRenderView.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerConnectomeMatrix.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerConnectomeMatrix.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerFCD.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerFCD.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerLineProfile.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerLineProfile.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerMRI.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerMRI.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerODF.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerODF.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerPLabel.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerPLabel.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerPointSet.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerPointSet.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerPropertyPointSet.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerPropertyPointSet.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerSurface.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerSurface.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerTrack.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerTrack.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerVolumeBase.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerVolumeBase.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LayerVolumeTrack.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LayerVolumeTrack.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/LivewireTool.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/LivewireTool.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/MainWindow.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/MainWindow.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/MyCmdLineParser.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/MyCmdLineParser.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/MyUtils.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/MyUtils.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/MyVTKUtils.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/MyVTKUtils.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/PanelPointSet.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/PanelPointSet.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/PanelSurface.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/PanelSurface.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/PanelVolume.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/PanelVolume.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/SurfaceAnnotation.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/SurfaceAnnotation.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/SurfaceLabel.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/SurfaceLabel.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/SurfaceOverlay.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/SurfaceOverlay.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/SurfacePath.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/SurfacePath.cpp + for src in $(grep -lP '(^|[^:a-zA-Z_])(cerr|cout|endl)\b' freeview/*.cpp 2> /dev/null) + '[' -f freeview/VolumeFilter.cpp ']' + sed -i '1i #include \nusing std::cerr;\nusing std::cout;\nusing std::endl;' freeview/VolumeFilter.cpp + sed -i '/add_subdirectories(/,/)/{/anatomicuts/d;/resurf/d}' CMakeLists.txt + sed -i 's|#if (__GNUC__ > 3) \&\& !defined(HAVE_MCHECK) \&\& !defined(ARM64)|#if (__GNUC__ > 3) \&\& !defined(HAVE_MCHECK) \&\& !defined(ARM64) \&\& defined(__x86_64__)|' include/affine.h + sed -i 's|#include |#ifdef __x86_64__\n#include \n#endif|' include/affine.hpp + sed -i -z 's|//! Specialise matrix-vector for float and use SSE|#ifdef __x86_64__\n\n//! Specialise matrix-vector for float and use SSE|' include/affine.hpp + sed -i -z 's|}\n\n}\n\n\n#endif|}\n\n#endif // __x86_64__\n\n}\n\n\n#endif|' include/affine.hpp + cat + cat + sed -i '\|/packages/gifti|d' utils/CMakeLists.txt + sed -i $'/target_link_libraries(utils/,/)/{\n s/\\bgifti\\b/giftiio/\n}' utils/CMakeLists.txt + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i 's|${CMAKE_SOURCE_DIR}/packages/tetgen|/usr/include|g' '{}' + + find . -name CMakeLists.txt -not -path './packages/*' -exec sed -i '/target_link_libraries/s/\btetgen\b/tet/g' '{}' + + sed -i 's/target_link_libraries(vtkutils tiff)/target_link_libraries(vtkutils tiff VTK::CommonCore VTK::CommonDataModel VTK::RenderingCore VTK::RenderingOpenGL2 VTK::FiltersCore VTK::FiltersSources VTK::ImagingCore)/' vtkutils/CMakeLists.txt + sed -i 's/VTK_LEGACY(void SetColorSpaceToHSVNoWrap())/\/\/ VTK_LEGACY removed/' vtkutils/vtkRGBATransferFunction.h + sed -i '/^void vtkRGBATransferFunction::SetColorSpaceToHSVNoWrap/,/^}/s/^/\/\//' vtkutils/vtkRGBATransferFunction.cxx + sed -i /build-stamp/d CMakeLists.txt + sed -i '/symlink(.*python.*bin.*python3)/d' CMakeLists.txt + echo '# Disabled for RPM build — no fspython' + sed -i 's|\${CMAKE_INSTALL_PREFIX}/\${INSTALL_DESTINATION}|$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/\${INSTALL_DESTINATION}|g' cmake/functions.cmake + sed -i $'/^function(install_append_help/,/^endfunction()/c\\\nfunction(install_append_help SCRIPT HELPTEXT DESTINATION)\\\n install_configured(${SCRIPT} DESTINATION ${DESTINATION})\\\n install(FILES ${HELPTEXT} DESTINATION docs/xml)\\\n add_test(${SCRIPT}_help_test bash -c "xmllint --noout ${CMAKE_CURRENT_SOURCE_DIR}/${HELPTEXT}")\\\nendfunction()' cmake/functions.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.1MWIde + umask 022 + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17' + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive' + export 'FFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -G Ninja -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -GNinja -DCMAKE_POLICY_VERSION_MINIMUM=3.5 -DMINIMAL=OFF -DBUILD_GUIS=ON -DFREEVIEW_LINEPROF=OFF -DDISTRIBUTE_FSPYTHON=OFF -DINSTALL_PYTHON_DEPENDENCIES=OFF -DTIFF_SYSLIBS=ON -DGLUT_SYSLIBS=ON -DMARTINOS_BUILD=OFF -DWARNING_AS_ERROR=OFF -DBUILD_FORTRAN=ON -DINTEGRATE_SAMSEG=ON -DLINK_SHARED_AS_NEEDED=ON -DVTK_DIR=/usr/lib64/cmake/vtk -DITK_DIR=/usr/lib64/cmake/ITK-5.4 -DQt6_DIR=/usr/lib64/cmake/Qt6 -DCMAKE_INSTALL_PREFIX=/usr/lib/freesurfer-8.2.0 CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 16.1.1 -- The CXX compiler identification is GNU 16.1.1 -- The Fortran compiler identification is GNU 16.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/bin/gfortran - skipped CMake Warning at CMakeLists.txt:74 (message): FS_PACKAGES_DIR is NOT defined - build will be limited -- For HOST_OS=Fedora FSPYTHON_INSTALL_PREFIX=/usr/lib/freesurfer-8.2.0 -- For HOST_OS=Fedora lineprof disabled -- For HOST_OS=Fedora TIFF_SYSLIBS=ON -- For HOST_OS=Fedora INTEGRATE_SAMSEG=ON -- No build type selected - defaulting to Release -- For HOST_OS=Fedora QT_SYSLIBS=ON -- For HOST_OS=Fedora VTK_SYSLIBS=ON -- For HOST_OS=Fedora ITK_SYSLIBS=ON -- For HOST_OS=Fedora GLUT_SYSLIBS=ON -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- For HOST_OS=Fedora C/C++ standard set to 17 for gcc/g++ version 16 -- Could NOT find PETSC (missing: PETSC_INCLUDE_DIR) -- Could NOT find ANN (missing: ANN_INCLUDE_DIR ANN_LIBRARIES) -- Found OpenMP_C: -fopenmp (found version "5.2") -- Found OpenMP_CXX: -fopenmp (found version "5.2") -- Found OpenMP_Fortran: -fopenmp (found version "5.2") -- Found OpenMP: TRUE (found version "5.2") -- Could NOT find OpenCV (missing: OpenCV_INCLUDE_DIR OpenCV_LIBRARIES) -- OpenSSL_INCLUDE_DIR=/usr/include -- OpenSSL_LIB_DIR=/lib64 -- Found X11: /usr/include -- For HOST_OS=Fedora X11_LIBRARIES=/usr/lib64/libX11.so;/usr/lib64/libXmu.so;/usr/lib64/libXt.so -- For HOST_OS=Fedora X11_INCLUDE_DIR=/usr/include -- Found OpenGL: /usr/lib64/libOpenGL.so -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test HAVE_STDATOMIC -- Performing Test HAVE_STDATOMIC - Success -- Found WrapAtomic: TRUE -- Found WrapOpenGL: TRUE -- Found WrapVulkanHeaders: /usr/include -- Could NOT find Qt6X11Extras (missing: Qt6X11Extras_DIR) CMake Warning at cmake/FindQT.cmake:21 (find_package): Found package configuration file: /usr/lib64/cmake/Qt6/Qt6Config.cmake but it set Qt6_FOUND to FALSE so package "Qt6" is considered to be NOT FOUND. Reason given by package: Failed to find required Qt component "X11Extras". Expected Config file at "/usr/lib64/cmake/Qt6X11Extras/Qt6X11ExtrasConfig.cmake" does NOT exist Configuring with --debug-find-pkg=Qt6X11Extras might reveal details why the package was not found. Configuring with -DQT_DEBUG_FIND_PACKAGE=ON will print the values of some of the path variables that find_package uses to try and find the package. Call Stack (most recent call first): CMakeLists.txt:577 (find_package) -- For HOST_OS=Fedora Qt6_DIR=/usr/lib64/cmake/Qt6 -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.12.0") -- Found utf8cpp: /usr/include/utf8cpp -- Found JsonCpp: /usr/lib64/libjsoncpp.so (found suitable version "1.9.6", minimum required is "0.7.0") -- Found PEGTL: /usr/include/tao (found suitable version "2.8.3", minimum required is "2.0.0") -- Found PNG: /usr/lib64/libpng.so (found version "1.6.58") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found EXPAT: /usr/lib64/libexpat.so (found suitable version "2.8.1", minimum required is "2.2.1") -- Found JPEG: /usr/lib64/libjpeg.so (found version "62") -- Found TIFF: /usr/lib64/libtiff.so (found version "4.7.1") -- Found LZ4: /usr/lib64/liblz4.so (found version "1.10.0") -- Found LZMA: /usr/lib64/liblzma.so (found version "5.8.3") -- Could NOT find freetype (missing: freetype_DIR) -- Found Freetype: /usr/lib64/libfreetype.so (found version "2.14.3") -- For HOST_OS=Fedora VTK_DIR=/usr/lib64/cmake/vtk -- Found libaec: /usr/lib64/cmake/libaec/libaec-config.cmake (found version "1.1.7") missing components: shared -- Found Python3: /usr/bin/python3.14 (found suitable version "3.14.5", minimum required is "3.14") found components: Interpreter Development.Module Development.Embed -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.13.9") -- Found HDF5: hdf5-shared (found version "2.1.1") found components: C HL -- Found NetCDF: /usr/include (found version "4.10.0") -- Found THEORA: /usr/lib64/libtheora.so -- Found OGG: /usr/lib64/libogg.so -- Found LibHaru: /usr/lib64/libhpdf.so (found suitable version "2.4.5", minimum required is "2.3.0") -- Found LibPROJ: /usr/lib64/libproj.so (found version "9.8.1") -- Found SQLite3: /usr/lib64/libsqlite3.so (found version "3.53.1") -- Could NOT find freetype (missing: freetype_DIR) -- For HOST_OS=Fedora ITK_DIR=/usr/lib/cmake/ITK-5.4 -- Compiling source under build tree /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build CMake Deprecation Warning at packages/dcm2niix/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at packages/dcm2niix/ucm.cmake:13 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): packages/dcm2niix/CMakeLists.txt:6 (include) -- Performing Test ARM_CRC -- Performing Test ARM_CRC - Failed -- Performing Test HAS_SSE2 -- Performing Test HAS_SSE2 - Failed -- Build with JNIFTI support, USE_JNIFTI is ON -- For HOST_OS=Fedora dcm2niix ZLIB_IMPLEMENTATION=Miniz ZLIB_ROOT= CMake Deprecation Warning at packages/pybind11/CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- pybind11 v2.10.0 dev1 -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- For HOST_OS=Fedora CMAKE_CXX_COMPILER_ID=GNU -- For HOST_OS=Fedora CMAKE_CXX_FLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -- CMAKE_CXX_COMPILER_ID=GNU CMake Warning at talairach_avi/CMakeLists.txt:82 (message): Not linking FORTRAN executables with static libgfortran -- For HOST_OS Fedora CMAKE_EXE_LINKER_FLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle CMake Deprecation Warning at /usr/lib64/cmake/vtk/vtk-use-file-deprecated.cmake:1 (message): The `VTK_USE_FILE` is no longer used starting with 8.90. Call Stack (most recent call first): freeview/CMakeLists.txt:22 (include) -- For HOST_OS=Fedora Build of freeview with ScribblePrompt disabled CMake Deprecation Warning at mris_smooth_intracortical/CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (6.4s) -- Generating done (0.8s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j8 --verbose Change Dir: '/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 8 [1/1580] /usr/bin/gcc -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/jpeg -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -w -fPIC -std=gnu89 -MD -MT packages/jpeg/CMakeFiles/jpeg.dir/jdatadst.c.o -MF packages/jpeg/CMakeFiles/jpeg.dir/jdatadst.c.o.d -o packages/jpeg/CMakeFiles/jpeg.dir/jdatadst.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg/jdatadst.c [2/1580] /usr/bin/gcc -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/jpeg 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/bfileio.cpp.o -MF utils/CMakeFiles/utils.dir/bfileio.cpp.o.d -o utils/CMakeFiles/utils.dir/bfileio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/bfileio.cpp [155/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DmyDisableOpenJPEG -DmyEnableJNIFTI -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -static-libstdc++ -static-libgcc -DNDEBUG -static-libstdc++ -static-libgcc -std=c++17 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -w -fPIC -std=gnu89 -MD -MT packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom.cpp.o -MF packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom.cpp.o.d -o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix/nii_dicom.cpp [156/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/chklc.cpp.o -MF utils/CMakeFiles/utils.dir/chklc.cpp.o.d -o utils/CMakeFiles/utils.dir/chklc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/chklc.cpp [157/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/argparse.cpp.o -MF utils/CMakeFiles/utils.dir/argparse.cpp.o.d -o utils/CMakeFiles/utils.dir/argparse.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/argparse.cpp [158/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/annotation.cpp.o -MF utils/CMakeFiles/utils.dir/annotation.cpp.o.d -o utils/CMakeFiles/utils.dir/annotation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [159/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/autoencoder.cpp.o -MF utils/CMakeFiles/utils.dir/autoencoder.cpp.o.d -o utils/CMakeFiles/utils.dir/autoencoder.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [160/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/Bruker.cpp.o -MF utils/CMakeFiles/utils.dir/Bruker.cpp.o.d -o utils/CMakeFiles/utils.dir/Bruker.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/Bruker.cpp [163/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/corio.cpp.o -MF utils/CMakeFiles/utils.dir/corio.cpp.o.d -o utils/CMakeFiles/utils.dir/corio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/corio.cpp [164/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cmat.cpp.o -MF utils/CMakeFiles/utils.dir/cmat.cpp.o.d -o utils/CMakeFiles/utils.dir/cmat.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cmat.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cmat.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cmat.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [165/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ctrpoints.cpp.o -MF utils/CMakeFiles/utils.dir/ctrpoints.cpp.o.d -o utils/CMakeFiles/utils.dir/ctrpoints.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ctrpoints.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/ctrpoints.h:23, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ctrpoints.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [166/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/connectcomp.cpp.o -MF utils/CMakeFiles/utils.dir/connectcomp.cpp.o.d -o utils/CMakeFiles/utils.dir/connectcomp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/connectcomp.cpp [167/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/class_array.cpp.o -MF utils/CMakeFiles/utils.dir/class_array.cpp.o.d -o utils/CMakeFiles/utils.dir/class_array.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/class_array.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/class_array.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/class_array.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [168/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/diag.cpp.o -MF utils/CMakeFiles/utils.dir/diag.cpp.o.d -o utils/CMakeFiles/utils.dir/diag.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/diag.cpp [169/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dct.cpp.o -MF utils/CMakeFiles/utils.dir/dct.cpp.o.d -o utils/CMakeFiles/utils.dir/dct.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dct.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/dct.h:35, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dct.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [170/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DmyDisableOpenJPEG -DmyEnableJNIFTI -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -static-libstdc++ -static-libgcc -DNDEBUG -static-libstdc++ -static-libgcc -std=c++17 -Wno-format-overflow -Wno-unused-result -fno-diagnostics-show-caret -w -fPIC -std=gnu89 -MD -MT packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o -MF packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o.d -o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix/nii_dicom_batch.cpp [171/1580] : && /usr/bin/cmake -E rm -f packages/dcm2niix/libdcm2niixfs.a && /usr/bin/ar qc packages/dcm2niix/libdcm2niixfs.a packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/dcm2niix_fswrapper.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/jpg_0XC3.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/ujpeg.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nifti1_io_core.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_foreign.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_ortho.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/nii_dicom_batch.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/cJSON.cpp.o packages/dcm2niix/CMakeFiles/dcm2niixfs.dir/base64.cpp.o && /usr/bin/ranlib packages/dcm2niix/libdcm2niixfs.a && : [172/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cvector.cpp.o -MF utils/CMakeFiles/utils.dir/cvector.cpp.o.d -o utils/CMakeFiles/utils.dir/cvector.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cvector.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cvector.h:19, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cvector.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [175/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dmatrix.cpp.o -MF utils/CMakeFiles/utils.dir/dmatrix.cpp.o.d -o 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/colortab.cpp.o -MF utils/CMakeFiles/utils.dir/colortab.cpp.o.d -o utils/CMakeFiles/utils.dir/colortab.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/colortab.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/colortab.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [177/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix 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-DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/evschutils.cpp.o -MF utils/CMakeFiles/utils.dir/evschutils.cpp.o.d -o utils/CMakeFiles/utils.dir/evschutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/evschutils.cpp [179/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fftutils.cpp.o -MF utils/CMakeFiles/utils.dir/fftutils.cpp.o.d -o utils/CMakeFiles/utils.dir/fftutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fftutils.cpp [180/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/cma.cpp.o -MF utils/CMakeFiles/utils.dir/cma.cpp.o.d -o utils/CMakeFiles/utils.dir/cma.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:34:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 34 | { | ^ | GTMSEG /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:53:9: note: type is not C-compatible because ‘GTMSEG::mergesegfile’ has default member initializer 53 | char *mergesegfile=NULL; | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp: In function ‘MRI* MRIaqueductSeg(MRI*, MRI*, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:2311:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2311 | for(int n=0; n < aqcrs.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/cma.cpp:2312:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2312 | for(int m=0; m < v3crs.size(); m++){ | ~~^~~~~~~~~~~~~~ [181/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dtk.fs.cpp.o -MF utils/CMakeFiles/utils.dir/dtk.fs.cpp.o.d -o utils/CMakeFiles/utils.dir/dtk.fs.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dtk.fs.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dtk.fs.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [182/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/flash.cpp.o -MF utils/CMakeFiles/utils.dir/flash.cpp.o.d -o utils/CMakeFiles/utils.dir/flash.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/flash.cpp [183/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fio.cpp.o -MF utils/CMakeFiles/utils.dir/fio.cpp.o.d -o utils/CMakeFiles/utils.dir/fio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In function ‘int makelocallink(char*, char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1005:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1005 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1030:8: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1030 | chdir(cwd); | ~~~~~^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In member function ‘int TSV::read(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:1047:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1047 | fgets(line,5000,fp); | ~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp: In function ‘fio_dirname(char const*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:636:26: warning: pointer ‘pname_27’ may be used after ‘free’ [-Wuse-after-free] 636 | if (l == 0 || pname[0] == '/') | ~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fio.cpp:634:9: note: call to ‘free’ here 634 | free(pname); | ~~~~^~~~~~~ [184/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/dti.cpp.o -MF utils/CMakeFiles/utils.dir/dti.cpp.o.d -o utils/CMakeFiles/utils.dir/dti.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp: In function ‘MATRIX* DTIloadBVectors(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:907:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 907 | fscanf(fp,"%lf %lf %lf",&gx,&gy,&gz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:912:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 912 | fscanf(fp,"%lf %lf %lf",&gx,&gy,&gz); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:918:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 918 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][1])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:920:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 920 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][2])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/dti.cpp:922:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 922 | fscanf(fp,"%f",&(bvecs->rptr[nbvecs+1][3])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [185/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fs_lbfgs.cpp.o -MF utils/CMakeFiles/utils.dir/fs_lbfgs.cpp.o.d -o utils/CMakeFiles/utils.dir/fs_lbfgs.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fs_lbfgs.cpp [191/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/DICOMRead.cpp.o -MF utils/CMakeFiles/utils.dir/DICOMRead.cpp.o.d -o utils/CMakeFiles/utils.dir/DICOMRead.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp: In function ‘int DumpSiemensAsciiAlt(const char*, FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:2824:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2824 | for(nthchar=0; nthchar < strlen(tmpstr); nthchar++){ | ~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : In function ‘sprintf’, inlined from ‘DICOMRead3(char const*, bool, std::vector >, std::allocator > > >**)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/DICOMRead.cpp:6123:12: /usr/include/bits/stdio2.h:30:34: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘prephitmp_180’ [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [192/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fcd.cpp.o -MF utils/CMakeFiles/utils.dir/fcd.cpp.o.d -o utils/CMakeFiles/utils.dir/fcd.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fcd.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fcd.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fcd.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [193/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o -MF utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o.d -o utils/CMakeFiles/utils.dir/fsPrintHelp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsPrintHelp.cpp [196/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fscnpy.cpp.o -MF utils/CMakeFiles/utils.dir/fscnpy.cpp.o.d -o utils/CMakeFiles/utils.dir/fscnpy.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp: In member function ‘void fscnpy::__parse_header_dictionary(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:330:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 330 | for (int i = 0; i < __shape.size(); i++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:356:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 356 | for (int n = 0; n < __shape.size(); n++) | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:219:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 219 | fread(magic_string, 1, __magic_string_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:228:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fread(&__major_version, 1, 1, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:229:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fread(&__minor_version, 1, 1, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:234:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 234 | fread(&__header_len, 1, __header_len_bytes[__major_version-1], __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:238:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fread(dict, 1, __header_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fscnpy.cpp:245:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fread(restheader, 1, restheader_len, __npyfp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [197/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsglm.cpp.o -MF utils/CMakeFiles/utils.dir/fsglm.cpp.o.d -o utils/CMakeFiles/utils.dir/fsglm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsglm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsglm.cpp:135: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ [198/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fmriutils.cpp.o -MF utils/CMakeFiles/utils.dir/fmriutils.cpp.o.d -o utils/CMakeFiles/utils.dir/fmriutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp: In function ‘MRI* MRIframeMean(MRI*, MRI*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:1687:49: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1687 | if(FrameWeight.size()!=0 && FrameWeight.size()!=vol->nframes){ | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp: In function ‘MRI* fMRIextractFrames(MRI*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:2418:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2418 | for(int n=0; n < framelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fmriutils.cpp:2435:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2435 | for(int n=0; n < framelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ [199/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fstagsio.cpp.o -MF utils/CMakeFiles/utils.dir/fstagsio.cpp.o.d -o utils/CMakeFiles/utils.dir/fstagsio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fstagsio.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fstagsio.cpp:8: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [200/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o -MF utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o.d -o utils/CMakeFiles/utils.dir/gcalinearprior.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcalinearprior.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcalinearprior.hpp:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcalinearprior.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [201/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o -MF utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o.d -o utils/CMakeFiles/utils.dir/gcalinearnode.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcalinearnode.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcalinearnode.hpp:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcalinearnode.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [202/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/fsgdf.cpp.o -MF utils/CMakeFiles/utils.dir/fsgdf.cpp.o.d -o utils/CMakeFiles/utils.dir/fsgdf.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:68: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘FSGD* gdfRead(const char*, const char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:291:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 291 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:299:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | fscanf(fp,"%d",&version); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘FSGD* gdfReadV1(const char*, const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:428:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 428 | fscanf(fp,"%s",tag); | ~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:436:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 436 | fscanf(fp,"%d",&version); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:535:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 535 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:560:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:581:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 581 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:611:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 611 | fscanf(fp,"%s",gd->varlabel[m]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:633:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 633 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:635:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 635 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:637:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 637 | fscanf(fp,"%d %d",&gd->fieldcol[m],&gd->datacol[m]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:644:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 644 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:687:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 687 | fscanf(fp,"%s",tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:715:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 715 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp: In function ‘int gdfCountItemsOnLine(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsgdf.cpp:961:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 961 | fgets(tmpstr,10000,fp); | ~~~~~^~~~~~~~~~~~~~~~~ [203/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gclass.cpp.o -MF utils/CMakeFiles/utils.dir/gclass.cpp.o.d -o utils/CMakeFiles/utils.dir/gclass.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gclass.cpp [204/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcaboundary.cpp.o -MF utils/CMakeFiles/utils.dir/gcaboundary.cpp.o.d -o utils/CMakeFiles/utils.dir/gcaboundary.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcaboundary.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcaboundary.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcaboundary.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [205/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/getdelim.cpp.o -MF utils/CMakeFiles/utils.dir/getdelim.cpp.o.d -o utils/CMakeFiles/utils.dir/getdelim.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/getdelim.cpp [206/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcautils.cpp.o -MF utils/CMakeFiles/utils.dir/gcautils.cpp.o.d -o utils/CMakeFiles/utils.dir/gcautils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcautils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcautils.hpp:23, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcautils.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [207/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/getline.cpp.o -MF utils/CMakeFiles/utils.dir/getline.cpp.o.d -o utils/CMakeFiles/utils.dir/getline.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/getline.cpp [208/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o -MF utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamcomputeLabelsLinearCPU.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcamcomputeLabelsLinearCPU.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcamcomputeLabelsLinearCPU.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [209/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/geos.cpp.o -MF utils/CMakeFiles/utils.dir/geos.cpp.o.d -o utils/CMakeFiles/utils.dir/geos.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/geos.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/geos.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/geos.cpp:1: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [210/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcsa.cpp.o -MF utils/CMakeFiles/utils.dir/gcsa.cpp.o.d -o utils/CMakeFiles/utils.dir/gcsa.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ [211/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o -MF utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o.d -o utils/CMakeFiles/utils.dir/gw_ic2562.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gw_ic2562.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gw_ic2562.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [212/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gw_utils.cpp.o -MF utils/CMakeFiles/utils.dir/gw_utils.cpp.o.d -o utils/CMakeFiles/utils.dir/gw_utils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gw_utils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gw_utils.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gw_utils.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [213/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/hips.cpp.o -MF utils/CMakeFiles/utils.dir/hips.cpp.o.d -o utils/CMakeFiles/utils.dir/hips.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/hips.cpp [214/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o -MF utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamorphtestutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcamorphtestutils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorphtestutils.hpp:34, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcamorphtestutils.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [215/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gifti.cpp.o -MF utils/CMakeFiles/utils.dir/gifti.cpp.o.d -o utils/CMakeFiles/utils.dir/gifti.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gifti.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gifti.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gifti.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [216/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gtm.cpp.o -MF utils/CMakeFiles/utils.dir/gtm.cpp.o.d -o utils/CMakeFiles/utils.dir/gtm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:34:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 34 | { | ^ | GTMSEG /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:53:9: note: type is not C-compatible because ‘GTMSEG::mergesegfile’ has default member initializer 53 | char *mergesegfile=NULL; | ^~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp: In function ‘int MRIgtmSeg(GTMSEG*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 111 | for(int n=0; n < gtmseg->mergesegids.size(); n++) printf("%d ",gtmseg->mergesegids[n]); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gtm.cpp:120:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 120 | for(int n=0; n < gtmseg->mergesegids.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [217/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/hippo.cpp.o -MF utils/CMakeFiles/utils.dir/hippo.cpp.o.d -o utils/CMakeFiles/utils.dir/hippo.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/hippo.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/hippo.cpp:5: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [218/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic12.cpp.o -MF utils/CMakeFiles/utils.dir/ic12.cpp.o.d -o utils/CMakeFiles/utils.dir/ic12.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic12.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic12.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [219/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/histo.cpp.o -MF utils/CMakeFiles/utils.dir/histo.cpp.o.d -o utils/CMakeFiles/utils.dir/histo.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/histo.cpp [220/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic163842.cpp.o -MF utils/CMakeFiles/utils.dir/ic163842.cpp.o.d -o utils/CMakeFiles/utils.dir/ic163842.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic163842.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic163842.cpp:18: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [221/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic2562.cpp.o -MF utils/CMakeFiles/utils.dir/ic2562.cpp.o.d -o utils/CMakeFiles/utils.dir/ic2562.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic2562.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic2562.cpp:18: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [222/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic42.cpp.o -MF utils/CMakeFiles/utils.dir/ic42.cpp.o.d -o utils/CMakeFiles/utils.dir/ic42.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic42.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic42.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [223/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP 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-DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ic642.cpp.o -MF utils/CMakeFiles/utils.dir/ic642.cpp.o.d -o utils/CMakeFiles/utils.dir/ic642.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic642.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ic642.cpp:18: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [228/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER 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-fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/icosahedron.cpp.o -MF utils/CMakeFiles/utils.dir/icosahedron.cpp.o.d -o utils/CMakeFiles/utils.dir/icosahedron.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/icosahedron.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/icosahedron.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [232/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER 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/usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mideface.cpp.o -MF utils/CMakeFiles/utils.dir/mideface.cpp.o.d -o utils/CMakeFiles/utils.dir/mideface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp: In member function ‘MRI* MiDeface::EmbedCode(MRI*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 585 | for(int n=0; n < strlen(embedded_code); n++) | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:588:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 588 | for(int n=0; n < strlen(version); n++) | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp: In member function ‘int MiDeface::EmbedCodeCheck(const MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mideface.cpp:610:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 610 | for(int n=0; n < strlen(embedded_code); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~ [244/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gca.cpp.o -MF utils/CMakeFiles/utils.dir/gca.cpp.o.d -o utils/CMakeFiles/utils.dir/gca.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp: In function ‘GCA_SAMPLE* GCAfindStableSamples(GCA*, int*, int, float, int*, int, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:30: warning: comparison between two arrays [-Warray-compare] 4960 | if (((means[0] <= min_unknown) || (means[0] >= max_unknown))) /* disabled check */ | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:30: note: use unary ‘+’ which decays operands to pointers or ‘&(means[0])[0] <= &min_unknown[0]’ to compare the addresses /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:59: warning: comparison between two arrays [-Warray-compare] 4960 | if (((means[0] <= min_unknown) || (means[0] >= max_unknown))) /* disabled check */ | ~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:4960:59: note: use unary ‘+’ which decays operands to pointers or ‘&(means[0])[0] >= &max_unknown[0]’ to compare the addresses In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [245/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/label.cpp.o -MF utils/CMakeFiles/utils.dir/label.cpp.o.d -o utils/CMakeFiles/utils.dir/label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/label.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [246/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/matrix.cpp.o -MF utils/CMakeFiles/utils.dir/matrix.cpp.o.d -o utils/CMakeFiles/utils.dir/matrix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/matrix.cpp [247/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/gcamorph.cpp.o -MF utils/CMakeFiles/utils.dir/gcamorph.cpp.o.d -o utils/CMakeFiles/utils.dir/gcamorph.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcamorph.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcamorph.cpp:48: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [248/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_level_set.cpp.o -MF utils/CMakeFiles/utils.dir/mri_level_set.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_level_set.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_level_set.cpp [249/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_identify.cpp.o -MF utils/CMakeFiles/utils.dir/mri_identify.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_identify.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_identify.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_identify.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [250/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o -MF utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_fastmarching.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_fastmarching.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_fastmarching.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [251/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriBSpline.cpp.o -MF utils/CMakeFiles/utils.dir/mriBSpline.cpp.o.d -o utils/CMakeFiles/utils.dir/mriBSpline.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriBSpline.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriBSpline.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [252/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_tess.cpp.o -MF utils/CMakeFiles/utils.dir/mri_tess.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_tess.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_tess.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_tess.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [253/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriclass.cpp.o -MF utils/CMakeFiles/utils.dir/mriclass.cpp.o.d -o utils/CMakeFiles/utils.dir/mriclass.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriclass.cpp [254/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mricurv.cpp.o -MF utils/CMakeFiles/utils.dir/mricurv.cpp.o.d -o utils/CMakeFiles/utils.dir/mricurv.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mricurv.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri_topology.h:17, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mricurv.h:17, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mricurv.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [255/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRIio_old.cpp.o -MF utils/CMakeFiles/utils.dir/MRIio_old.cpp.o.d -o utils/CMakeFiles/utils.dir/MRIio_old.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRIio_old.cpp [256/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri2.cpp.o -MF utils/CMakeFiles/utils.dir/mri2.cpp.o.d -o utils/CMakeFiles/utils.dir/mri2.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIrescaleBySeg(MRI*, MRI*, std::vector, double, MRI*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:275:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | for(int n=0; n < ids.size(); n++){ | ~~^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRImax(MRI*, MRI*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1821:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1821 | for (unsigned int f = 0; f < frames; f++) { | ~~^~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1822:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1822 | for (unsigned int c = 0; c < cols; c++) { | ~~^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1823:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1823 | for (unsigned int r = 0; r < rows; r++) { | ~~^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:1824:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1824 | for (unsigned int s = 0; s < slices; s++) { | ~~^~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIvolTopoFix(MRI*, int, MRI*, int, int, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:5838:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5838 | for(int k=1; k < crs.size(); k++) | ~~^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int BinarizeMRI::dump(MRI*, const MRI*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:6627:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6627 | for(int n=0; n < matchlist.size(); n++) fprintf(m_debugfp,"%d ",matchlist[n]); | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int BinarizeMRI::qualifies(const MRI*, const MRI*, int, int, int, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:6679:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6679 | for(int n=0; n < matchlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRItpfpfnSeg(MRI*, MRI*, std::vector, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7568:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7568 | for(int n=0; n < segids.size(); n++) printf("%d ",segids[n]); | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In function ‘MRI* MRIcropAroundCRS(MRI*, double*, int*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7662:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7662 | for(int n=0; n < iKeep.size(); n++) printf("%d ",iKeep[n]); | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:7734:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 7734 | for(int n=0; n < iKeep.size(); n++) if(val == iKeep[n]) hit = 1; | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp: In member function ‘int SpatialCor::read(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8032:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8032 | fscanf(fp,"%*s %d",&this->nmask); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8033:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8033 | fscanf(fp,"%*s %lf",&this->xsum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8034:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8034 | fscanf(fp,"%*s %lf",&this->x2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8035:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8035 | fscanf(fp,"%*s %lf",&this->dx2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8036:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8036 | fscanf(fp,"%*s %lf",&this->xmn); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8037:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8037 | fscanf(fp,"%*s %lf",&this->ysum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8038:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8038 | fscanf(fp,"%*s %lf",&this->y2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8039:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8039 | fscanf(fp,"%*s %lf",&this->dy2sum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8040:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8040 | fscanf(fp,"%*s %lf",&this->ymn); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8041:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8041 | fscanf(fp,"%*s %lf",&this->xysum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8042:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8042 | fscanf(fp,"%*s %lf",&this->num); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8043:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8043 | fscanf(fp,"%*s %lf",&this->den); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri2.cpp:8044:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8044 | fscanf(fp,"%*s %lf",&this->pcc); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [257/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrihisto.cpp.o -MF utils/CMakeFiles/utils.dir/mrihisto.cpp.o.d -o utils/CMakeFiles/utils.dir/mrihisto.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp: In function ‘MRIhistoEqualizeRegion(MRI*, MRI*, int, MRI_REGION*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:461:28: warning: dangling pointer ‘region_2’ to ‘tmp’ may be used [-Wdangling-pointer=] 461 | MRIgetEqualizeHistoRegion(mri_src, histo_eq, low, region, 1); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:453:16: note: ‘tmp’ declared here 453 | MRI_REGION tmp; | ^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:462:38: warning: dangling pointer ‘region_2’ to ‘tmp’ may be used [-Wdangling-pointer=] 462 | mri_dst = MRIapplyHistogramToRegion(mri_src, mri_dst, histo_eq, region); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrihisto.cpp:453:16: note: ‘tmp’ declared here 453 | MRI_REGION tmp; | ^~~ [258/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri_topology.cpp.o -MF utils/CMakeFiles/utils.dir/mri_topology.cpp.o.d -o utils/CMakeFiles/utils.dir/mri_topology.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri_topology.h:17, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [259/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriflood.cpp.o -MF utils/CMakeFiles/utils.dir/mriflood.cpp.o.d -o utils/CMakeFiles/utils.dir/mriflood.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriflood.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriflood.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [260/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriprob.cpp.o -MF utils/CMakeFiles/utils.dir/mriprob.cpp.o.d -o utils/CMakeFiles/utils.dir/mriprob.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriprob.cpp [261/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o -MF utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_compVolFrac.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mris_compVolFrac.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mris_compVolFrac.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mris_compVolFrac.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [262/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrinorm.cpp.o -MF utils/CMakeFiles/utils.dir/mrinorm.cpp.o.d -o utils/CMakeFiles/utils.dir/mrinorm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrinorm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/ctrpoints.h:23, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrinorm.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [263/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrifilter.cpp.o -MF utils/CMakeFiles/utils.dir/mrifilter.cpp.o.d -o utils/CMakeFiles/utils.dir/mrifilter.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrifilter.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrifilter.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [264/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o -MF utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_fastmarching.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mris_fastmarching.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mris_fastmarching.cpp:1: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [265/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisegment.cpp.o -MF utils/CMakeFiles/utils.dir/mrisegment.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisegment.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisegment.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisegment.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [266/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mripolv.cpp.o -MF utils/CMakeFiles/utils.dir/mripolv.cpp.o.d -o utils/CMakeFiles/utils.dir/mripolv.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mripolv.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mripolv.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [267/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrimorph.cpp.o -MF utils/CMakeFiles/utils.dir/mrimorph.cpp.o.d -o utils/CMakeFiles/utils.dir/mrimorph.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrimorph.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrimorph.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [268/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mri.cpp.o -MF utils/CMakeFiles/utils.dir/mri.cpp.o.d -o utils/CMakeFiles/utils.dir/mri.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp: In member function ‘void MRI::loadITKImage(itk::Image::Pointer, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:15: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:41: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:17836:68: warning: comparison of integer expressions of different signedness: ‘const itk::Size<3>::value_type’ {aka ‘const long unsigned int’} and ‘int’ [-Wsign-compare] 17836 | if (size[0] != this->width || size[1] != this->height || size[2] != this->depth) { In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [269/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o -MF utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o.d -o utils/CMakeFiles/utils.dir/mris_sphshapepvf.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mris_sphshapepvf.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mris_sphshapepvf.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mris_sphshapepvf.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mris_sphshapepvf.h:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [270/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o -MF utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o.d -o utils/CMakeFiles/utils.dir/MRISrigidBodyAlignGlobal.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/MRISrigidBodyAlignGlobal.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:19: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp: In function ‘MRISrigidBodyAlignGlobal_findMinSSE(double*, double*, double*, double*, MRIS*, INTEGRATION_PARMS*, float, float, double, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:530:52: warning: array subscript 1 is above array bounds of ‘struct Center[1]’ [-Warray-bounds=] 530 | if (outCenters[oci].center_sse > outCenters[i].center_sse) oci = i; | ~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:154:11: note: while referencing ‘outCenters’ 154 | Centers outCenters; | ^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:475:62: warning: array subscript 1 is above array bounds of ‘struct Center[1]’ [-Warray-bounds=] 475 | if (outCenters[oci].center_sse < outCenters[i].center_sse) oci = i; | ~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISrigidBodyAlignGlobal.cpp:154:11: note: while referencing ‘outCenters’ 154 | Centers outCenters; | ^~~~~~~~~~ [271/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriio.cpp.o -MF utils/CMakeFiles/utils.dir/mriio.cpp.o.d -o utils/CMakeFiles/utils.dir/mriio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/autoencoder.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:51: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:46: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/error.h:6, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrishash.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:54: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp: In function ‘ReadAnalyzeHeader(char const*, int*, int*, int*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:4934:28: warning: pointer ‘hdr_25’ used after ‘free’ [-Wuse-after-free] 4934 | hdr->dime.datatype)); | ~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:4928:9: note: call to ‘free’ here 4928 | free(hdr); | ~~~~^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp: In function ‘MRIwrite(MRI*, char const*, std::vector >*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:1353:30: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 1353 | sprintf(tmp, "%s%s.%s", fname_copy, ((*mriVector)[n])->fnamePostFixes, ext); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : In function ‘sprintf’, inlined from ‘MRIwrite(MRI*, char const*, std::vector >*, int)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriio.cpp:1353:16: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [272/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriset.cpp.o -MF utils/CMakeFiles/utils.dir/mriset.cpp.o.d -o utils/CMakeFiles/utils.dir/mriset.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp: In function ‘MRI* MRIerodeAndReplaceLabel(MRI*, int, int, int, int, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:720:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 720 | for(int n = 0; n < edgecrs.size(); n++){ | ~~^~~~~~~~~~~~~~~~ [273/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrishash.cpp.o -MF utils/CMakeFiles/utils.dir/mrishash.cpp.o.d -o utils/CMakeFiles/utils.dir/mrishash.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrishash.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrishash.cpp:41: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [274/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o -MF utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o.d -o utils/CMakeFiles/utils.dir/GradUnwarp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:8: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp: In member function ‘void GradUnwarp::printCoeff()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:334:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 334 | for (; i < strlen(arrs); i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp: In member function ‘void GradUnwarp::read_siemens_coeff(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:106:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:112:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 112 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:121:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 121 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:130:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 130 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/GradUnwarp.cpp:137:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 137 | fgets(coeffline, sizeof(coeffline), fgrad); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [275/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisp.cpp.o -MF utils/CMakeFiles/utils.dir/mrisp.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisp.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisp.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [276/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_base.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_base.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:61, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_base.cpp:19: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:60: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [277/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:61, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf.cpp:19: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_base.h:60: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [278/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_integrate.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_integrate.cpp:18: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [279/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_compute_dxyz.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_compute_dxyz.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_compute_dxyz.h:23, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_compute_dxyz.cpp:15: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [280/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_io_stl.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io_stl.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io_stl.cpp:1: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [281/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_deform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [282/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_metricProperties_faster.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties_faster.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties_faster.cpp:3: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [283/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_io.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.h:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int mrisReadGeoFilePositions(MRI_SURFACE*, const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3506:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3506 | fscanf(fp, "%e %e %e", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3509:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3509 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int mrisReadTriangleFilePositions(MRI_SURFACE*, const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5452:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5452 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5453:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5453 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* MRISreadVTK(MRI_SURFACE*, const char*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:2961:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2961 | fscanf(fp, "%f %f %f", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3017:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3017 | fscanf(fp, "%d ", &facepoints); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3025:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3025 | fscanf(fp, "%d", &vno); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRIS* MRISreadOverAlloc_old(const char*, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:4052:18: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4052 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadAsciiFile(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3361:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3361 | fscanf(fp, "%f %f %f %d\n", &x, &y, &z, &rip); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3372:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3372 | fscanf(fp, "%d ", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3383:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3383 | fscanf(fp, "%d\n", &rip); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadGeoFile(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3436:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3436 | fscanf(fp, "%e %e %e", &x, &y, &z); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3439:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3439 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3446:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3446 | fscanf(fp, "%d ", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:3454:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3454 | fscanf(fp, "-%d\n", &face->v[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRI_SURFACE* mrisReadTriangleFile(const char*, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5510:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5510 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5511:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5511 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5599:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5599 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘MRIS* __MRISreadQuadrangleFile(const char*, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:6474:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6474 | fread(mris->cmdlines[mris->ncmds], sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘SMALL_SURFACE* mrisReadTriangleFileVertexPositionsOnly(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5399 | fgets(line, 200, fp); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5400:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5400 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp: In function ‘int MRISreadDecimation(MRI_SURFACE*, char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5746:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5746 | fscanf(fptr, "%*s"); | ~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5747:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5747 | fscanf(fptr, "%d", &d); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_io.cpp:5751:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5751 | fscanf(fptr, "%d", &d); | ~~~~~~^~~~~~~~~~~~~~~~ [284/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_project.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_project.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_project.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_project.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [285/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_sphere_interp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sphere_interp.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_sphere_interp.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sphere_interp.cpp:1: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [286/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_defect.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [287/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_timeStep.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_deform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_timeStep.cpp:19: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [288/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_topology.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp: In function ‘int MRISfindNeighborsAtVertex_new(MRIS*, int, int, size_t, int*, int*, bool)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:1405:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1405 | if (neighborCount > listCapacity) { | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp: In function ‘int MRISisNextSpatOrderedNeighbor(MRIS*, int, int, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:3399:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3399 | for(int n=0; n < vnolist.size(); n++) if(vnotest == vnolist[n]) return(0); | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/const.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:24: In member function ‘FixedSizeArray::operator[](unsigned long)’, inlined from ‘MRISgetSpatOrderedNeighbors(MRIS*, int)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_topology.cpp:3369:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/base.h:145:55: warning: array subscript 4 is above array bounds of ‘int[3]’ [-Warray-bounds=] 145 | T& operator[](size_t i) { return v[i]; } | ~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/base.h: In function ‘MRISgetSpatOrderedNeighbors(MRIS*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/base.h:155:7: note: while referencing ‘v’ 155 | T v[SIZE]; | ^ [289/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mriTransform.cpp.o -MF utils/CMakeFiles/utils.dir/mriTransform.cpp.o.d -o utils/CMakeFiles/utils.dir/mriTransform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriTransform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriTransform.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [290/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_vals.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_vals.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_vals.cpp:19: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [291/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisutils.cpp.o -MF utils/CMakeFiles/utils.dir/mrisutils.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRIS* MRISaverageSurfaces(std::vector, MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:4182:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4182 | for(int n=1; n < surfs.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRIS* MRISupsampleSplit(MRIS*, int, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:3872:10: warning: ignoring return value of ‘int mkstemp(char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3872 | mkstemp(tmpfile); | ~~~~~~~^~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRISfindPath(int*, int, int, int*, int*, MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1881:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 1881 | check[closest_vno] = FALSE; /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1841:25: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ 1841 | check = (char *)calloc(mris->nvertices, sizeof(char)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [292/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrivoxel.cpp.o -MF utils/CMakeFiles/utils.dir/mrivoxel.cpp.o.d -o utils/CMakeFiles/utils.dir/mrivoxel.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrivoxel.cpp [293/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_sseTerms.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_sseTerms.h:23, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp:15: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp: In function ‘double MRISpointSetLocationError(MRIS*, double, json*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_sseTerms.cpp:1939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1939 | for(int i = 0; i < PointSet["points"].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [294/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_mri.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_vals.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp: In member function ‘int AutoDetGWStats::ReadStream(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8057:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8057 | fscanf(fp,"%*s %d",&hemicode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8058:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8058 | fscanf(fp,"%*s %lf",&white_border_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8059:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8059 | fscanf(fp,"%*s %lf",&white_border_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8060:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8060 | fscanf(fp,"%*s %lf",&white_outside_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8061:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8061 | fscanf(fp,"%*s %lf",&white_inside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8062:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8062 | fscanf(fp,"%*s %lf",&white_outside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8063:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8063 | fscanf(fp,"%*s %lf",&pial_border_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8064:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8064 | fscanf(fp,"%*s %lf",&pial_border_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8065:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8065 | fscanf(fp,"%*s %lf",&pial_outside_low); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8066:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8066 | fscanf(fp,"%*s %lf",&pial_inside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8067:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8067 | fscanf(fp,"%*s %lf",&pial_outside_hi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8068:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8068 | fscanf(fp,"%*s %d\n",&use_mode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8069:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8069 | fscanf(fp,"%*s %f",&variablesigma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8070:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8070 | fscanf(fp,"%*s %lf",&std_scale); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8071:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8071 | fscanf(fp,"%*s %f",&adWHITE_MATTER_MEAN); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8072:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8072 | fscanf(fp,"%*s %f",&MAX_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8073:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8073 | fscanf(fp,"%*s %f",&MIN_BORDER_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8074:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8074 | fscanf(fp,"%*s %f",&MAX_BORDER_WHITE); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8075:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8075 | fscanf(fp,"%*s %f",&MAX_GRAY); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8076:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8076 | fscanf(fp,"%*s %f",&MID_GRAY); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8077:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8077 | fscanf(fp,"%*s %f",&MIN_GRAY_AT_CSF_BORDER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8078:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8078 | fscanf(fp,"%*s %f",&MAX_GRAY_AT_CSF_BORDER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8079:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8079 | fscanf(fp,"%*s %f",&MIN_CSF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8080:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8080 | fscanf(fp,"%*s %f",&adMAX_CSF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8081:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8081 | fscanf(fp,"%*s %f",&white_mean); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8082:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8082 | fscanf(fp,"%*s %f",&white_mode); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8083:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8083 | fscanf(fp,"%*s %f",&white_std); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8084:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8084 | fscanf(fp,"%*s %f",&gray_mean); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8085:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8085 | fscanf(fp,"%*s %f",&gray_mode ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8086:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8086 | fscanf(fp,"%*s %f",&gray_std); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8087:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8087 | fscanf(fp,"%*s %f",&min_border_white); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8088:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8088 | fscanf(fp,"%*s %f",&max_border_white); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8089:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8089 | fscanf(fp,"%*s %f",&min_gray_at_white_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8090:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8090 | fscanf(fp,"%*s %f",&max_gray); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8091:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8091 | fscanf(fp,"%*s %f",&min_gray_at_csf_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8092:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8092 | fscanf(fp,"%*s %f",&max_gray_at_csf_border); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8093:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8093 | fscanf(fp,"%*s %f",&min_csf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8094:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8094 | fscanf(fp,"%*s %f",&max_csf); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8095:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8095 | fscanf(fp,"%*s %lf",&max_gray_scale); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_mri.cpp:8096:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 8096 | fscanf(fp,"%*s %lf",&max_scale_down); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [295/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pgmstubs.cpp.o -MF utils/CMakeFiles/utils.dir/pgmstubs.cpp.o.d -o utils/CMakeFiles/utils.dir/pgmstubs.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/pgmstubs.cpp [296/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o -MF utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o.d -o utils/CMakeFiles/utils.dir/MRISurfOverlay.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISurfOverlay.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/MRISurfOverlay.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/MRISurfOverlay.cpp:1: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [297/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g 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-DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/Progname.cpp.o -MF utils/CMakeFiles/utils.dir/Progname.cpp.o.d -o utils/CMakeFiles/utils.dir/Progname.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/Progname.cpp [300/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/offset.cpp.o -MF utils/CMakeFiles/utils.dir/offset.cpp.o.d -o utils/CMakeFiles/utils.dir/offset.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/offset.cpp [301/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/prime.cpp.o -MF utils/CMakeFiles/utils.dir/prime.cpp.o.d -o utils/CMakeFiles/utils.dir/prime.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/prime.cpp [302/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/path.cpp.o -MF utils/CMakeFiles/utils.dir/path.cpp.o.d -o utils/CMakeFiles/utils.dir/path.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/path.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp: In function ‘PathReadMany(char*, int*, PATH***)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:165:29: warning: pointer ‘path_171’ may be used after ‘free’ [-Wuse-after-free] 165 | if (path) free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:163:19: note: call to ‘free’ here 163 | free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:183:29: warning: pointer ‘path_171’ may be used after ‘free’ [-Wuse-after-free] 183 | if (path) free(path); | ~~~~^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/path.cpp:181:19: note: call to ‘free’ here 181 | free(path); | ~~~~^~~~~~ [303/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o -MF utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o.d -o utils/CMakeFiles/utils.dir/mrisurf_metricProperties.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp:17: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [304/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rbf.cpp.o -MF utils/CMakeFiles/utils.dir/rbf.cpp.o.d -o utils/CMakeFiles/utils.dir/rbf.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rbf.cpp [305/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/warpfield.cpp.o -MF utils/CMakeFiles/utils.dir/warpfield.cpp.o.d -o utils/CMakeFiles/utils.dir/warpfield.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/warpfield.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/warpfield.cpp:6: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [306/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/region.cpp.o -MF utils/CMakeFiles/utils.dir/region.cpp.o.d -o utils/CMakeFiles/utils.dir/region.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/region.cpp [307/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/randomfields.cpp.o -MF utils/CMakeFiles/utils.dir/randomfields.cpp.o.d -o utils/CMakeFiles/utils.dir/randomfields.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/randomfields.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [308/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/registerio.cpp.o -MF utils/CMakeFiles/utils.dir/registerio.cpp.o.d -o utils/CMakeFiles/utils.dir/registerio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/registerio.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/registerio.cpp:15: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [309/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/realm.cpp.o -MF utils/CMakeFiles/utils.dir/realm.cpp.o.d -o utils/CMakeFiles/utils.dir/realm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/realm.h:54, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [310/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/retinotopy.cpp.o -MF utils/CMakeFiles/utils.dir/retinotopy.cpp.o.d -o utils/CMakeFiles/utils.dir/retinotopy.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/retinotopy.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [311/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rbm.cpp.o -MF utils/CMakeFiles/utils.dir/rbm.cpp.o.d -o utils/CMakeFiles/utils.dir/rbm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rbm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/voxlist.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/rbm.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rbm.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [312/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rforest.cpp.o -MF utils/CMakeFiles/utils.dir/rforest.cpp.o.d -o utils/CMakeFiles/utils.dir/rforest.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rforest.cpp [313/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rgb.cpp.o -MF utils/CMakeFiles/utils.dir/rgb.cpp.o.d -o utils/CMakeFiles/utils.dir/rgb.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rgb.cpp [314/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/romp_support.cpp.o -MF utils/CMakeFiles/utils.dir/romp_support.cpp.o.d -o utils/CMakeFiles/utils.dir/romp_support.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/romp_support.cpp [315/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/selxavgio.cpp.o -MF utils/CMakeFiles/utils.dir/selxavgio.cpp.o.d -o utils/CMakeFiles/utils.dir/selxavgio.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp: In function ‘SXADAT* ld_sxadat(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:142:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 142 | fscanf(fp, "%*s %f", &sxa->TR); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:143:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 143 | fscanf(fp, "%*s %f", &sxa->TimeWindow); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:144:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 144 | fscanf(fp, "%*s %f", &sxa->TPreStim); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:145:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fscanf(fp, "%*s %d", &sxa->Nc); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:146:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | fscanf(fp, "%*s %d", &sxa->Nh); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:153:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | fscanf(fp, "%*s %f", &sxa->TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:154:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 154 | fscanf(fp, "%*s %f", &sxa->DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:156:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 156 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:158:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | for (n = 0; n < sxa->Nc; n++) fscanf(fp, "%d", &sxa->npercond[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:159:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 159 | fscanf(fp, "%*s %d", &sxa->nruns); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:160:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 160 | fscanf(fp, "%*s %d", &sxa->ntp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:161:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 161 | fscanf(fp, "%*s %d", &sxa->nrows); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:162:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 162 | fscanf(fp, "%*s %d", &sxa->ncols); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:163:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 163 | fscanf(fp, "%*s %d", &sxa->nskip); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:164:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 164 | fscanf(fp, "%*s %d", &sxa->DTOrder); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:165:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 165 | fscanf(fp, "%*s %f", &sxa->RescaleFactor); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:166:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 166 | fscanf(fp, "%*s %f", &sxa->HanningRadius); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:167:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | fscanf(fp, "%*s %d", &sxa->nNoiseAC); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:168:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | fscanf(fp, "%*s %d", &sxa->BrainAirSeg); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:169:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 169 | fscanf(fp, "%*s %d", &sxa->GammaFit); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:171:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 171 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:172:47: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 172 | for (n = 0; n < sxa->GammaFit; n++) fscanf(fp, "%f", &sxa->gfDelta[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:173:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 173 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:174:47: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | for (n = 0; n < sxa->GammaFit; n++) fscanf(fp, "%f", &sxa->gfTau[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:176:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 176 | fscanf(fp, "%*s %d", &sxa->NullCondId); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:180:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:185:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | fscanf(fp, "%f", &sxa->SumXtX[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:192:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 192 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:197:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 197 | fscanf(fp, "%f", &sxa->hCovMtx[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:202:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fscanf(fp, "%*s"); | ~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/selxavgio.cpp:204:39: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | for (n = 0; n < sxa->Nc; n++) fscanf(fp, "%d", &sxa->CondIdMap[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [316/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/sig.cpp.o -MF utils/CMakeFiles/utils.dir/sig.cpp.o.d -o utils/CMakeFiles/utils.dir/sig.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/sig.cpp [317/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rfa.cpp.o -MF utils/CMakeFiles/utils.dir/rfa.cpp.o.d -o utils/CMakeFiles/utils.dir/rfa.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rfa.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rfa.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [318/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/resample.cpp.o -MF utils/CMakeFiles/utils.dir/resample.cpp.o.d -o utils/CMakeFiles/utils.dir/resample.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/resample.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/resample.cpp:67: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [319/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/rfutils.cpp.o -MF utils/CMakeFiles/utils.dir/rfutils.cpp.o.d -o utils/CMakeFiles/utils.dir/rfutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rfutils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/rfutils.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [320/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/signa.cpp.o -MF utils/CMakeFiles/utils.dir/signa.cpp.o.d -o utils/CMakeFiles/utils.dir/signa.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp: In function ‘MRI* signaRead(char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp:300:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 300 | fread(&MRISseq_vox(mri, 0, 0, slice, frame), sizeof(short), mri->width * mri->height, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/signa.cpp:305:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 305 | fread(&MRISvox(mri, 0, 0, slice), sizeof(short), mri->width * mri->height, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [321/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/pointset.cpp.o -MF utils/CMakeFiles/utils.dir/pointset.cpp.o.d -o utils/CMakeFiles/utils.dir/pointset.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/pointset.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/pointset.cpp:10: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [322/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/svm.cpp.o -MF utils/CMakeFiles/utils.dir/svm.cpp.o.d -o utils/CMakeFiles/utils.dir/svm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/svm.cpp [323/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tags.cpp.o -MF utils/CMakeFiles/utils.dir/tags.cpp.o.d -o utils/CMakeFiles/utils.dir/tags.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp: In function ‘int TAGread(FILE*, void*, long long int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:77:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 77 | fread(buf, sizeof(char), len, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp: In function ‘MATRIX* TAGreadMatrix(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:186:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 186 | fscanf(fp, "%s", buf); // get past "AutoAlign"/"Matrix" string | ~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tags.cpp:189:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 189 | fscanf(fp, "%f", &(M->rptr[r][c])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [324/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/timer.cpp.o -MF utils/CMakeFiles/utils.dir/timer.cpp.o.d -o utils/CMakeFiles/utils.dir/timer.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/timer.cpp [325/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/talairachex.cpp.o -MF utils/CMakeFiles/utils.dir/talairachex.cpp.o.d -o utils/CMakeFiles/utils.dir/talairachex.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/talairachex.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/talairachex.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/talairachex.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/talairachex.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [326/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tritri.cpp.o -MF utils/CMakeFiles/utils.dir/tritri.cpp.o.d -o utils/CMakeFiles/utils.dir/tritri.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tritri.cpp [327/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/surfcluster.cpp.o -MF utils/CMakeFiles/utils.dir/surfcluster.cpp.o.d -o utils/CMakeFiles/utils.dir/surfcluster.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/resample.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [328/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tukey.cpp.o -MF utils/CMakeFiles/utils.dir/tukey.cpp.o.d -o utils/CMakeFiles/utils.dir/tukey.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tukey.cpp [329/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/tfce.cpp.o -MF utils/CMakeFiles/utils.dir/tfce.cpp.o.d -o utils/CMakeFiles/utils.dir/tfce.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/surfcluster.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp: In member function ‘MRI* TFCE::voxcor(MRI*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:53:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 53 | for(n=0; n < maxstatlist.size(); n++) if(v < maxstatlist[n]) break; | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:55:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 55 | if(n!=maxstatlist.size()){ | ~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp: In member function ‘int TFCE::write_vector_double(char*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:81:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 81 | for(int n=0; n TFCE::read_vector_double(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:101:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 101 | fscanf(fp,"%lf",&v); | ~~~~~~^~~~~~~~~~~~~ [330/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/surfgrad.cpp.o -MF utils/CMakeFiles/utils.dir/surfgrad.cpp.o.d -o utils/CMakeFiles/utils.dir/surfgrad.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRISedgeLengthCost(MRIS*, double, double, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1523:19: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 1523 | tx[e->vtxno[0]] += gradv0->rptr[1][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:11: note: ‘tx’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1527:19: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 1527 | ty[e->vtxno[1]] += gradv1->rptr[2][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:15: note: ‘ty’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1528:19: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 1528 | tz[e->vtxno[1]] += gradv1->rptr[3][1]; | ~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1496:19: note: ‘tz’ was declared here 1496 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRISedgeAngleCost(MRIS*, double, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1743:28: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 1743 | tx[e->vtxno[wrtvtxno]] += gradv->rptr[1][1]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:11: note: ‘tx’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1744:28: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 1744 | ty[e->vtxno[wrtvtxno]] += gradv->rptr[1][2]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:15: note: ‘ty’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1745:28: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 1745 | tz[e->vtxno[wrtvtxno]] += gradv->rptr[1][3]; | ~~~~~~~~~~~~~~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:1710:19: note: ‘tz’ was declared here 1710 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp: In function ‘MRIScornerDotCost(MRIS*, double, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2533:17: warning: ‘tx’ may be used uninitialized [-Wmaybe-uninitialized] 2533 | tx[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][1]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:11: note: ‘tx’ was declared here 2495 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2534:17: warning: ‘ty’ may be used uninitialized [-Wmaybe-uninitialized] 2534 | ty[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][2]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:15: note: ‘ty’ was declared here 2495 | double *tx,*ty,*tz; | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2535:17: warning: ‘tz’ may be used uninitialized [-Wmaybe-uninitialized] 2535 | tz[vtxno] += (2*A*c->gradDot[wrtvtxno]->rptr[1][3]); | ~~~~~~~~^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfgrad.cpp:2495:19: note: ‘tz’ was declared here 2495 | double *tx,*ty,*tz; | ^~ [331/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/stats.cpp.o -MF utils/CMakeFiles/utils.dir/stats.cpp.o.d -o utils/CMakeFiles/utils.dir/stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘STAT_TABLE* LoadStatTableFS(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:70:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | fgets(tmpstr, 100000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:91:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 91 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:96:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:106:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 106 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘STAT_TABLE* InitStatTableFromMRI(MRI*, const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:371:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 371 | fgets(tmpstr, 100000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:396:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 396 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:401:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 401 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:407:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | fscanf(fp, "%s", tmpstr); | ~~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:409:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 409 | fgets(tmpstr, 100000, fp); // skip till end of line | ~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘SV* StatReadVolume(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:508:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 508 | fscanf(fp, "%*s %f", &TER); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:509:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 509 | fscanf(fp, "%*s %d", &DOF); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:579:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 579 | fscanf(fp, "%d %d %d", &width, &height, &nframes); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:605:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 605 | fscanf(fp, "%d %d %d", &width, &height, &nframes); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp: In function ‘SV* StatReadVolume2(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/stats.cpp:772:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/utils.cpp.o -MF utils/CMakeFiles/utils.dir/utils.cpp.o.d -o utils/CMakeFiles/utils.dir/utils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp: In function ‘char* GetNthItemFromString(const char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1323:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1323 | if (nth >= tokens.size()) { | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp: In function ‘int* GetMemUsage(int*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1623:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1623 | if (!strcasecmp(tag, "VmSize:")) fscanf(fp, "%d", &u[0]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1624:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1624 | if (!strcasecmp(tag, "VmPeak:")) fscanf(fp, "%d", &u[1]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1625:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1625 | if (!strcasecmp(tag, "VmRSS:")) fscanf(fp, "%d", &u[2]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1626:44: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1626 | if (!strcasecmp(tag, "VmData:")) fscanf(fp, "%d", &u[3]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1627:43: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1627 | if (!strcasecmp(tag, "VmStk:")) fscanf(fp, "%d", &u[4]); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1628:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1628 | fgets(tag, 499, fp); | ~~~~~^~~~~~~~~~~~~~ [338/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/ventfix.cpp.o -MF utils/CMakeFiles/utils.dir/ventfix.cpp.o.d -o utils/CMakeFiles/utils.dir/ventfix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/volcluster.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/ventfix.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp:8: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp: In static member function ‘static MRI* VentFix::ExpandSegIndices(MRI*, int, MRI*, int, int, int, int*, fsPointSet&, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/ventfix.cpp:164:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 164 | for(int n=0; n < idx.size(); n++){ | ~~^~~~~~~~~~~~ [339/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/xVoxel.cpp.o -MF utils/CMakeFiles/utils.dir/xVoxel.cpp.o.d -o utils/CMakeFiles/utils.dir/xVoxel.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/xVoxel.cpp [340/1580] /usr/bin/g++ -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/targetpointset.cpp.o -MF utils/CMakeFiles/utils.dir/targetpointset.cpp.o.d -o utils/CMakeFiles/utils.dir/targetpointset.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::PruneByAngle()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::PruneByDistance()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:62:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 62 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::WriteAsPatch(const char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:138:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for(int n=0; n < vtxlist.size(); n++) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘MRI* SurfacePointSet::MakeMask()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:166:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘double SurfacePointSet::CostAndGrad(double, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:183:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 183 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::Print(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:207:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 207 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘fsPointSet SurfacePointSet::VerticesToPointSet()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:224:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 224 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘fsPointSet SurfacePointSet::ConvertToPointSet()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:245:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In member function ‘int SurfacePointSet::MapPointSet()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:292:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 292 | for(int i = 0; i < PointSet["points"].size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:334:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 334 | for(int n=0; n < m_shl.size(); n++){ | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 348 | for(int n=0; n < psvtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 354 | for(int k=0; k < psvtxlist.size(); k++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:387:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 387 | for(int n=psvtxlist.size(); n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:398:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 398 | for(int n=0; n < vtxlist.size(); n++) surf->vertices[vtxlist[n]].val = 0; | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:410:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 410 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:430:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 430 | for(int n=0; n < vtxlist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp: In destructor ‘SurfacePointSet::~SurfacePointSet()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/targetpointset.cpp:462:18: warning: comparison of integer expressions of different 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/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f && /usr/bin/cmake -E cmake_ninja_depends --tdi=talairach_avi/CMakeFiles/gauss_4dfp.dir/FortranDependInfo.json --lang=Fortran --src=talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f --out=talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f --dep=talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f.d --obj=talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o --ddi=talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o.ddi --src-orig=/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f [346/1580] /usr/bin/gfortran -cpp -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/transform.cpp.o -MF utils/CMakeFiles/utils.dir/transform.cpp.o.d -o utils/CMakeFiles/utils.dir/transform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In function ‘double* SegRegCost(MRI*, MRI*, double*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4692:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4692 | for (unsigned int c = 0; c < f->width; c++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4693:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4693 | for (unsigned int r = 0; r < f->height; r++) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:4694:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 4694 | for (unsigned int s = 0; s < f->depth; s++) { | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In member function ‘int RegLandmarks::WriteCoords(const char*, const LTA*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:5630:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5630 | for(int n=0; n < sxyz.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In member function ‘fsPointSet RegLandmarks::Coords2PointSet(const LTA*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:5649:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5649 | for(int n=0; n < sxyz.size(); n++){ | ~~^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp: In function ‘LTA* ltaReadFileEx(const char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/transform.cpp:3138:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3138 | fscanf(fp, "mean = %f %f %f\n", <->x0, <->y0, <->z0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -E /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f && /usr/bin/cmake -E cmake_ninja_depends --tdi=talairach_avi/CMakeFiles/compute_vox2vox.dir/FortranDependInfo.json --lang=Fortran --src=talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f --out=talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f --dep=talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f.d --obj=talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o --ddi=talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o.ddi --src-orig=/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f [390/1580] /usr/bin/gfortran -cpp -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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/usr/bin/g++ -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkRGBATransferFunction.cxx [392/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/voxlist.cpp.o -MF utils/CMakeFiles/utils.dir/voxlist.cpp.o.d -o utils/CMakeFiles/utils.dir/voxlist.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [393/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/fiducials_correction_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/fiducials_correction_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/93d02c66a9c9424218bc4e43b9ad71ea186f849befb9c8a111bc24ce86cddc6e.d [394/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/fiducials_calibration_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_calibration /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/fiducials_calibration_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/460a14901e45198c9af1e283cec205832dd599f654e5107b9e3dc6e89d54b039.d [395/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/gauss_4dfp.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/gauss_4dfp.dir/Fortran.dd @talairach_avi/CMakeFiles/gauss_4dfp.dir/Fortran.dd.rsp [396/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/77dea275df47f28b10ec67cd3219e6bd0c4f86b1dcc453e3ee0dc33b3ac1c3dd.d [397/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/imgreg_4dfp.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/imgreg_4dfp.dir/Fortran.dd @talairach_avi/CMakeFiles/imgreg_4dfp.dir/Fortran.dd.rsp [398/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/CMakeFiles/connected_components_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/connected_components_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/connected_components /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/connected_components_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/8531ee3c6ac2d450659ab53b43bf214831bf9294d0655e7c8bab6c1f2b4e799e.d [399/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Fortran.dd @talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Fortran.dd.rsp [400/1580] /usr/bin/cmake -E cmake_ninja_dyndep --tdi=talairach_avi/CMakeFiles/compute_vox2vox.dir/FortranDependInfo.json --lang=Fortran --dd=talairach_avi/CMakeFiles/compute_vox2vox.dir/Fortran.dd @talairach_avi/CMakeFiles/compute_vox2vox.dir/Fortran.dd.rsp [401/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components/CMakeFiles/connected_components_autogen.dir/AutoRcc_connected_components_EWIEGA46WW_Info.json Release [402/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration_autogen.dir/AutoRcc_fiducials_calibration_EWIEGA46WW_Info.json Release [403/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction_autogen.dir/AutoRcc_retrospective_correction_EWIEGA46WW_Info.json Release [404/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction_autogen.dir/AutoRcc_fiducials_correction_EWIEGA46WW_Info.json Release [405/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/CMakeFiles/mask_extraction_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/ffefeb56eb3a130bcf7b69fc237a6799083317e5bc76cb0c7c0a1edd10fc0bf7.d [406/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/CMakeFiles/mask_extraction_autogen.dir/AutoRcc_mask_extraction_EWIEGA46WW_Info.json Release [407/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/CMakeFiles/dissection_photo_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/dffae2b8dc4bcd0a8d9ad28bb46f08d07d2dbc7c7d6197678871ac2ef8298190.d [408/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/CMakeFiles/dissection_photo_autogen.dir/AutoRcc_dissection_photo_EWIEGA46WW_Info.json Release [409/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool/CMakeFiles/diffusion_tool_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool/diffusion_tool_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/diffusion_tool /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/diffusion_tool/diffusion_tool_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/8bc9197bbe35ba0b5a6ac2c15563e10bdd2e68fd1341cc0569a89feee42b49b8.d [410/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/CMakeFiles/nmovie_qt_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/nmovie_qt /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/b2a9f6717b9320b5705c551db5226e1b66ade89ee1d70f9464f90777dcbc47d4.d [411/1580] /usr/bin/g++ -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkInflatePolyData.cxx [412/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecContrast.cxx [413/1580] /usr/bin/g++ -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-inconsistent-missing-override -MD -MT vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o -MF vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o.d -o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils/vtkRGBAColorTransferFunction.cxx [414/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecFactor.cxx [415/1580] : && /usr/bin/cmake -E rm -f vtkutils/libvtkutils.a && /usr/bin/ar qc vtkutils/libvtkutils.a vtkutils/CMakeFiles/vtkutils.dir/vtkFreesurferLookupTable.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkArrowPipeline.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBATransferFunction.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkRGBAColorTransferFunction.cxx.o vtkutils/CMakeFiles/vtkutils.dir/vtkInflatePolyData.cxx.o && /usr/bin/ranlib vtkutils/libvtkutils.a && : [416/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecGlmFitResults.cxx [417/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/utils -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/jpeg -I/usr/include/libxml2 -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -fopenmp -MD -MT utils/CMakeFiles/utils.dir/volcluster.cpp.o -MF utils/CMakeFiles/utils.dir/volcluster.cpp.o.d -o utils/CMakeFiles/utils.dir/volcluster.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::GrowOne(std::vector, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2351:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2351 | for(int n=0; n < nbrs.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::Clusterize()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2371:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2371 | if(pointno >= this->voxlist.size()) break; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2379 | if(pointno >= this->voxlist.size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::ClusterSummarize(MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2408:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2408 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::PrintClusterSum(FILE*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2456:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2456 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::WritePointSet(char*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2468:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2468 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::SortClusters(MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2490:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2490 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::PruneClusters(double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2513:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2513 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘int SpatTempCluster::MaxClusterSize()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2546:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2546 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In member function ‘std::vector SpatTempCluster::GetClusterSizes()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:2556:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2556 | for(int n=0; n < this->ClusterList.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In function ‘CHT* CHTread(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1078:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1078 | fgets(tmpstr, 1000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1092:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1092 | fgets(tmpstr, 1000, fp); | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1141:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1141 | fscanf(fp, "%lf ", &dummy); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1142:45: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1142 | for (v = 0; v < cht->n_sthr; v++) fscanf(fp, "%d ", &(cht->hits[i][v])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp: In function ‘CLUSTER_SIM_DATA* CSDread(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1320:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1320 | fscanf(fp, "%s", tag); | ~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1322:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1322 | fscanf(fp, "%s", csd->simtype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1324:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1324 | fscanf(fp, "%s", csd->anattype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1326:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1326 | fscanf(fp, "%s", csd->subject); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1327:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1327 | fscanf(fp, "%s", csd->hemi); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1331:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1331 | fscanf(fp, "%lf", &(csd->thresh)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1333:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | fscanf(fp, "%lf", &(csd->threshsign)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1335:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1335 | fscanf(fp, "%ld", &(csd->seed)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1337:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1337 | fscanf(fp, "%s", csd->contrast); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1339:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1339 | fscanf(fp, "%lf", &csd->nullfwhm); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1341:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1341 | fscanf(fp, "%lf", &csd->varfwhm); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1343:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1343 | fscanf(fp, "%lf", &csd->searchspace); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1345:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1345 | fscanf(fp, "%d", &(nrepstmp)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1359:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1359 | fscanf(fp, "%d", &(csd->nreps)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1363:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1363 | fscanf(fp, "%d", &(csd->FixGroupSubjectArea)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1365:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1365 | fgets(tmpstr, 1000, fp); // not an interesting line, so get past it | ~~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1370:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1370 | fscanf(fp, "%d", &(csd->nClusters[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1371:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1371 | fscanf(fp, "%lf", &(csd->MaxClusterSize[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1372:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1372 | fscanf(fp, "%lf", &(csd->MaxSig[nthrep])); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/volcluster.cpp:1378:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1378 | fscanf(fp, "%lf", &d); | ~~~~~~^~~~~~~~~~~~~~~ [418/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/packages/svm -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/svm -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 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/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.help.xml.h [426/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/lta_convert && xxd -i lta_convert.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert/lta_convert.help.xml.h [427/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/io && xxd -i fs_temp_file.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io/fs_temp_file.help.xml.h [428/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/io && xxd -i fs_temp_dir.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/io/fs_temp_dir.help.xml.h [429/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_add_xform_to_header && xxd -i mri_add_xform_to_header.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header/mri_add_xform_to_header.help.xml.h [430/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg && xxd -i mri_aparc2aseg.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg/mri_aparc2aseg.help.xml.h [431/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg && xxd -i mri_surf2volseg.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg/mri_surf2volseg.help.xml.h [432/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label && xxd -i mri_ca_label.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label/mri_ca_label.help.xml.h [433/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize && xxd -i mri_ca_normalize.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize/mri_ca_normalize.help.xml.h [434/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_register && xxd -i mri_ca_register.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register/mri_ca_register.help.xml.h [435/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cc && xxd -i mri_cc.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc/mri_cc.help.xml.h [436/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap && xxd -i mri_compute_seg_overlap.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap/mri_compute_seg_overlap.help.xml.h [437/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert && xxd -i mri_convert.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert/mri_convert.help.xml.h [438/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg && xxd -i mri_edit_wm_with_aseg.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.help.xml.h [439/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register && xxd -i mri_em_register.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register/mri_em_register.help.xml.h [440/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill && xxd -i mri_fill.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill/mri_fill.help.xml.h [441/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations && xxd -i mri_fuse_segmentations.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations/mri_fuse_segmentations.help.xml.h [442/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gcut && xxd -i mri_gcut.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut/mri_gcut.help.xml.h [443/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mask && xxd -i mri_mask.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask/mri_mask.help.xml.h [444/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc && xxd -i mri_pretess.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc/mri_pretess.help.xml.h [445/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc && xxd -i mris_extract_main_component.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc/mris_extract_main_component.help.xml.h [446/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize && xxd -i mri_normalize.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize/mri_normalize.help.xml.h [447/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize && xxd -i mri_long_normalize.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize/mri_long_normalize.help.xml.h [448/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_refine_seg && xxd -i mri_refine_seg.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg/mri_refine_seg.help.xml.h [449/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_remove_neck && xxd -i mri_remove_neck.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck/mri_remove_neck.help.xml.h [450/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i mri_robust_register.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/mri_robust_register.help.xml.h [451/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i mri_robust_template.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/mri_robust_template.help.xml.h [452/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register && xxd -i lta_diff.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register/lta_diff.help.xml.h [453/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap && xxd -i mri_seg_overlap.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap/mri_seg_overlap.help.xml.h [454/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segment && xxd -i mri_segment.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment/mri_segment.help.xml.h [455/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats && xxd -i mri_segstats.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats/mri_segstats.help.xml.h [456/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_si_prep && xxd -i mri_si_prep.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_si_prep/mri_si_prep.help.xml.h [457/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate && xxd -i mri_tessellate.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate/mri_tessellate.help.xml.h [458/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed && xxd -i mri_watershed.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed/mri_watershed.help.xml.h [459/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats && xxd -i mris_anatomical_stats.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats/mris_anatomical_stats.help.xml.h [460/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_annot_diff && xxd -i mris_annot_diff.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff/mris_annot_diff.help.xml.h [461/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_label && xxd -i mris_ca_label.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label/mris_ca_label.help.xml.h [462/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc && xxd -i mris_calc.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc/mris_calc.help.xml.h [463/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_convert && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_convert && xxd -i mris_convert.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_convert/mris_convert.help.xml.h [464/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature && xxd -i mris_curvature.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature/mris_curvature.help.xml.h [465/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset && xxd -i mris_defects_pointset.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset/mris_defects_pointset.help.xml.h [466/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_euler_number && xxd -i mris_euler_number.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number/mris_euler_number.help.xml.h [467/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fix_topology && xxd -i mris_fix_topology.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology/mris_fix_topology.help.xml.h [468/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fix_topology && xxd -i mris_remove_intersection.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology/mris_remove_intersection.help.xml.h [469/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_inflate && xxd -i mris_inflate.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate/mris_inflate.help.xml.h [470/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_jacobian && xxd -i mris_jacobian.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian/mris_jacobian.help.xml.h [471/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mris_make_surfaces.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mris_make_surfaces.help.xml.h [472/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mris_place_surface.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mris_place_surface.help.xml.h [473/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces && xxd -i mri_stopmask.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces/mri_stopmask.help.xml.h [474/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register && xxd -i mris_register.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register/mris_register.help.xml.h [475/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize && xxd -i mris_skeletonize.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize/mris_skeletonize.help.xml.h [476/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_smooth && xxd -i mris_smooth.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth/mris_smooth.help.xml.h [477/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sphere && xxd -i mris_sphere.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere/mris_sphere.help.xml.h [478/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask && xxd -i mris_volmask.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask/mris_volmask.help.xml.h [479/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mrisp_paint && xxd -i mrisp_paint.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint/mrisp_paint.help.xml.h [480/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd && xxd -i talairach_afd.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd/talairach_afd.help.xml.h [481/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cal_renormalize_gca && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cal_renormalize_gca && xxd -i mri_cal_renormalize_gca.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cal_renormalize_gca/mri_cal_renormalize_gca.help.xml.h [482/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_concatenate_gcam && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concatenate_gcam && xxd -i mri_concatenate_gcam.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_concatenate_gcam/mri_concatenate_gcam.help.xml.h [483/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ms_fitparms && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ms_fitparms && xxd -i mri_ms_fitparms.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ms_fitparms/mri_ms_fitparms.help.xml.h [484/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_rf_label && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_label && xxd -i mri_rf_label.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_rf_label/mri_rf_label.help.xml.h [485/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segcentroids && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segcentroids && xxd -i mri_segcentroids.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segcentroids/mri_segcentroids.help.xml.h [486/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_warp_convert && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_warp_convert && xxd -i mri_warp_convert.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_warp_convert/mri_warp_convert.help.xml.h [487/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_apply_reg && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_apply_reg && xxd -i mris_apply_reg.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_apply_reg/mris_apply_reg.help.xml.h [488/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_find_flat_regions && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions && xxd -i mris_find_flat_regions.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_find_flat_regions/mris_find_flat_regions.help.xml.h [489/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake && xxd -i mris_pmake.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake/mris_pmake.help.xml.h [490/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh && xxd -i mris_remesh.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh/mris_remesh.help.xml.h [491/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_reposition_surface && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface && xxd -i mris_reposition_surface.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_reposition_surface/mris_reposition_surface.help.xml.h [492/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_transform && cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_transform && xxd -i mris_transform.help.xml /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_transform/mris_transform.help.xml.h [493/1580] cd 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-grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -DNDEBUG -std=c++17 -w -fPIC -std=gnu89 -MD -MT packages/svm/CMakeFiles/svm.dir/svm-param.cpp.o -MF packages/svm/CMakeFiles/svm.dir/svm-param.cpp.o.d -o packages/svm/CMakeFiles/svm.dir/svm-param.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/svm/svm-param.cpp [496/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nrrdio -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/cephes -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNO_FIPS_SUPPORT -DNDEBUG -std=c++17 -MD -MT utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -MF utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o.d -o utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/fsPrintHelp.cpp [500/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecDataTable.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecDataTable.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecDataTable.cxx.o -c 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecProject.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecProject.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecProject.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecProject.cxx /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecProject.cxx: In member function ‘int QdecProject::RunMonteCarloSimulation(const char*, const char*, const char*, const char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecProject.cxx:1359:11: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1359 | system( ssCat.str().c_str() ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [505/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_add_xform_to_header -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -MF mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o.d -o mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_add_xform_to_header/mri_add_xform_to_header.cpp [508/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o -MF qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o.d -o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/qdecproject/QdecGlmDesign.cxx [509/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/lta_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -MF lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o.d -o lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/lta_convert/lta_convert.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [510/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -MF mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o.d -o mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [511/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -MF mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o.d -o mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2wmseg/mri_aparc2wmseg.cpp:84:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 84 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [512/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -MF mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o.d -o mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_aparc2aseg.cpp:40: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [513/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -MF mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o.d -o mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:181: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:182: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:192: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_binarize/mri_binarize.cpp:299:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [514/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_aparc2aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -MF mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o.d -o mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_aparc2aseg/mri_surf2volseg.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [515/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -MF mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o.d -o mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_brainvol_stats/mri_brainvol_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_brainvol_stats/mri_brainvol_stats.cpp:10: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [516/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -MF mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o.d -o mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:225:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 225 | for (i = 0 ; i < NSTRUCTURES ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_normalize/mri_ca_normalize.cpp:591:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 591 | for (norm_samples = i = 0 ; i < NSTRUCTURES ; i++) | ^ [517/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -MF mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o.d -o mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_register/mri_ca_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_register/mri_ca_register.cpp:54: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [518/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsDenoiseImageFs -isystem /usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign-field -fopenmp -MD -MT AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -MF AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o.d -o AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/AntsDenoiseImageFs/AntsDenoiseImageFs.cpp [519/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -MF mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o.d -o mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cc/mri_cc.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 311 | for (i = 0 ; i < NLABELS ; i++) | ^ [520/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ca_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -MF mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o.d -o mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘MRI* insert_wm_segmentation(MRI*, MRI*, int, int, GCA*, TRANSFORM*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:2170:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2170 | for (n = 0 ; n < NEDITABLE_LABELS ; n++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int preprocess(MRI*, MRI*, GCA*, TRANSFORM*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:2349:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2349 | for (i = 0 ; i < NEXPANDABLE_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int MRIinsertFromSeg(MRI*, MRI*, std::vector, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:5494:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5494 | for(int n=0; n < InsertFromSegIndices.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:5500:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5500 | for(int n=0; n < InsertFromSegIndices.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_label/mri_ca_label.cpp:276:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 276 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [521/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -MF mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o.d -o mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_overlap/mri_compute_overlap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_overlap/mri_compute_overlap.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [522/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -MF mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o.d -o mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concatenate_lta/mri_concatenate_lta.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [523/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_compute_seg_overlap -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -MF mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o.d -o mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap/mri_compute_seg_overlap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_seg_overlap/mri_compute_seg_overlap.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [524/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -MF mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o.d -o mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concat/mri_concat.cpp:44: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ [525/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign -fopenmp -MD -MT mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -MF mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o.d -o mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_make_uchar.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_make_uchar.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics [526/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -MF mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o.d -o mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_deface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_deface.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [527/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -MF mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o.d -o mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:79:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 79 | typedef struct { | ^ | CMDARGS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:89:9: note: type is not C-compatible because ‘CMDARGS::moviditherfile’ has default member initializer 89 | char *moviditherfile=NULL; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:135:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 135 | typedef struct { | ^ | COREG /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:163:8: note: type is not C-compatible because ‘COREG::movidither’ has default member initializer 163 | MRI *movidither=NULL; | ^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_coreg/mri_coreg.cpp:235:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [528/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign -fopenmp -MD -MT mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -MF mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o.d -o mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_convert/mri_convert.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics [529/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -MF mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o.d -o mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_deface/mri_defacer.cpp:168:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 168 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [530/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -MF mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o.d -o mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:144: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:145: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:155: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_diff/mri_diff.cpp:231:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [531/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/AntsN4BiasFieldCorrectionFs -isystem /usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-self-assign-field -fopenmp -MD -MT AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -MF AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o.d -o AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:74:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 74 | for(int n = 2; n < rescaleopts.size(); n++) rescaleids.push_back(atoi(rescaleopts[n].c_str())); | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs.cpp:76:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 76 | for(int n = 0; n < rescaleids.size(); n++) printf("%d ",rescaleids[n]); | ~~^~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-self-assign-field’ may have been intended to silence earlier diagnostics [532/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -MF mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o.d -o mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:46: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:51: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:54: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:339:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 339 | for(int n=0; n < psno.size(); n++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘std::vector ReadFrameList(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:788:14: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 788 | if(nread == -1) break; | ~~~~~~^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘double GetPVal(double, std::vector, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:946:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 946 | for(int n=0; n < vallist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘std::vector > GetPStackNos(int, int, int, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1003:41: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1003 | while(ntries < nperm*2 && psno.size() < nperm){ | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1011:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1011 | for(int k=0; k < psno.size(); k++){ | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:142:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 142 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In member function ‘int DualPerm::mergedirs(const char*, const char**, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:1037:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1037 | fscanf(fp,"%lu\n",&seedlist[n]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:282:24: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 282 | sprintf(cdir,"%s/%s",glmdir,dpm->glm->Cname[0]); | ^ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:282:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 1001) into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:287:22: warning: ‘/Xg.dat’ directive writing 7 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 287 | sprintf(fname,"%s/Xg.dat",glmdir); | ^~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:287:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 1007 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:289:22: warning: ‘/C.dat’ directive writing 6 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 289 | sprintf(fname,"%s/C.dat",glmdir); | ^~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:289:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 7 and 1006 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:291:22: warning: ‘/mask.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 291 | sprintf(fname,"%s/mask.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:291:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:294:22: warning: ‘/beta.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 294 | sprintf(fname,"%s/beta.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:294:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:296:22: warning: ‘/rvar.nii.gz’ directive writing 12 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 296 | sprintf(fname,"%s/rvar.nii.gz",glmdir); | ^~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:296:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 1012 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:298:22: warning: ‘/gamma.nii.gz’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 298 | sprintf(fname,"%s/gamma.nii.gz",cdir); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:298:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:302:22: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 302 | sprintf(fname,"%s/sig.nii.gz",cdir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dualperm/mri_dualperm.cpp:302:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [533/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/findtranslation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/findtranslation.cpp:76: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [534/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -MF mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o.d -o mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [535/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -MF mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o.d -o mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation/mri_edit_segmentation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_segmentation/mri_edit_segmentation.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [536/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/mri_em_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/mri_em_register.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [537/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_em_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -MF mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o.d -o mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_em_register/emregisterutils.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [538/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -MF mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o.d -o mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract_largest_CC/mri_extract_largest_CC.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract_largest_CC/mri_extract_largest_CC.cpp:40: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [539/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_edit_wm_with_aseg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -MF mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o.d -o mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_edit_wm_with_aseg/mri_edit_wm_with_aseg.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [540/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fuse_segmentations -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -MF mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o.d -o mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations/mri_fuse_segmentations.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fuse_segmentations/mri_fuse_segmentations.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [541/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -MF mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o.d -o mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:220: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:221: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:225: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fwhm/mri_fwhm.cpp:348:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 348 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [542/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_gcut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -MF mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o.d -o mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gcut/mri_gcut.cpp [543/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -MF mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o.d -o mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_info/mri_info.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_info/mri_info.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [544/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -MF mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o.d -o mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp:58: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label2label/mri_label2label.cpp:65: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [545/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -MF mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o.d -o mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label2vol/mri_label2vol.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label2vol/mri_label2vol.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [546/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -MF mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o.d -o mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp: In function ‘int read_mat(int, char**, int, MATRIX*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:198:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 198 | fscanf(fin, "%s", subject_name); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:199:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 199 | fscanf(fin, "%f", &ipr); | ~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:200:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 200 | fscanf(fin, "%f", &st); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:201:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | fscanf(fin, "%f", &brightness); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:202:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 202 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 | MATRIX_RELT(in_mat, 1, 2), MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:204:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 204 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 | MATRIX_RELT(in_mat, 2, 2), MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:206:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 206 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:208:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 208 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 4, 1), MATRIX_RELT(in_mat, 4, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 | MATRIX_RELT(in_mat, 4, 3), MATRIX_RELT(in_mat, 4, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:229:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 229 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), MATRIX_RELT(in_mat, 1, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 | MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:231:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 231 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), MATRIX_RELT(in_mat, 2, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:233:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 233 | fscanf(fin, "%f %f %f %f;", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:244:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 244 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 1, 1), MATRIX_RELT(in_mat, 1, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 | MATRIX_RELT(in_mat, 1, 3), MATRIX_RELT(in_mat, 1, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:246:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 246 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 2, 1), MATRIX_RELT(in_mat, 2, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 | MATRIX_RELT(in_mat, 2, 3), MATRIX_RELT(in_mat, 2, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:248:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 248 | fscanf(fin, "%f %f %f %f;", MATRIX_RELT(in_mat, 3, 1), MATRIX_RELT(in_mat, 3, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 | MATRIX_RELT(in_mat, 3, 3), MATRIX_RELT(in_mat, 3, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_matrix_multiply/mri_matrix_multiply.cpp:250:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 250 | fscanf(fin, "%f %f %f %f", MATRIX_RELT(in_mat, 4, 1), MATRIX_RELT(in_mat, 4, 2), | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | MATRIX_RELT(in_mat, 4, 3), MATRIX_RELT(in_mat, 4, 4)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [547/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_fill -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -MF mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o.d -o mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:2084:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2084 | for (i = 0 ; i < NLABELS ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:2764:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 2764 | for (i = 0 ; i < NLABELS ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:3034:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 3034 | for (i = 0 ; i < NLABELS ; i++) | ^ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fill/mri_fill.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [548/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -MF mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o.d -o mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_log_likelihood/mri_log_likelihood.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_log_likelihood/mri_log_likelihood.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [549/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -MF mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o.d -o mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mask/mri_mask.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mask/mri_mask.cpp:44: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [550/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -MF mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o.d -o mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc/mris_extract_main_component.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc/mris_extract_main_component.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [551/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -MF mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o.d -o mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize_tp2/mri_normalize_tp2.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [552/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -MF mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o.d -o mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_mc.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_mc.cpp:41: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [553/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -MF mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o.d -o mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_long_normalize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_long_normalize.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [554/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_mc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -MF mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o.d -o mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_pretess.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mc/mri_pretess.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [555/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_normalize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -MF mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o.d -o mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_normalize/mri_normalize.cpp:743:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 743 | for (i = 0 ; i < NWM_LABELS ; i++) | ^ [556/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/CMakeFiles/freeview_autogen.dir/AutogenInfo.json Release && /usr/bin/cmake -E touch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/timestamp && /usr/bin/cmake -E cmake_transform_depfile Ninja gccdepfile /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0 /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/deps /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/CMakeFiles/d/d0587130dd750f5f6eaa5ef912ff766041237476e46437fdc7199a16c3b86e6c.d [557/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -MF mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o.d -o mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_relabel_hypointensities/mri_relabel_hypointensities.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_relabel_hypointensities/mri_relabel_hypointensities.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [558/1580] cd /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview && /usr/bin/cmake -E cmake_autorcc /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/CMakeFiles/freeview_autogen.dir/AutoRcc_freeview_EWIEGA46WW_Info.json Release [559/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/glut -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -MF mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o.d -o mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_probedicom/mri_probedicom.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_probedicom/mri_probedicom.cpp:57: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [560/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -MF mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o.d -o mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos.cpp:88:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 88 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [561/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_remove_neck -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -MF mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o.d -o mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_remove_neck/mri_remove_neck.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_remove_neck/mri_remove_neck.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [562/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [563/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/JointHisto.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [564/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_refine_seg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -MF mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o.d -o mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_refine_seg/mri_refine_seg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_refine_seg/mri_refine_seg.cpp:9: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [565/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp:34: /usr/include/ITK-5.4/vcl_iostream.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_register.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [566/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.h:34, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegPowell.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [567/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [568/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [569/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/16/bits/stl_uninitialized.h:661:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/16/bits/stl_vector.h:1979:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/16/bits/stl_vector.h:1964:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/16/bits/stl_vector.h:741:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/16/bits/stl_uninitialized.h:294:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 294 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [570/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_template.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.h:35, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_robust_template.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [571/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [572/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [573/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [574/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [575/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [576/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [577/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [578/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/16/bits/stl_uninitialized.h:661:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/16/bits/stl_vector.h:1979:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/16/bits/stl_vector.h:1964:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/16/bits/stl_vector.h:741:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/16/bits/stl_uninitialized.h:294:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 294 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [579/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [580/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp:30: /usr/include/ITK-5.4/vcl_iostream.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp] 11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/lta_diff.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [581/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [582/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -MF mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o.d -o mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/RegRobust.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.h:35, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MultiRegistration.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [583/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.h:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Registration.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [584/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/Quaternion.cpp [585/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_create_tests.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_create_tests.cpp:47: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [586/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [587/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/CostFunctions.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [588/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/16/bits/stl_uninitialized.h:661:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/16/bits/stl_vector.h:1979:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/16/bits/stl_vector.h:1964:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/16/bits/stl_vector.h:741:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/16/bits/stl_uninitialized.h:294:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 294 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [589/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -MF mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o.d -o mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_gradient_info.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/mri_gradient_info.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [590/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMRI.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [591/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -MF mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o.d -o mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:72: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:73: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:83: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_diff/mri_seg_diff.cpp:128:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [592/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_robust_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o -MF mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o.d -o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.hxx:9, from /usr/include/ITK-5.4/itkMatrix.h:25, from /usr/include/ITK-5.4/itkImageBase.h:34, from /usr/include/ITK-5.4/itkNeighborhoodAccessorFunctor.h:22, from /usr/include/ITK-5.4/itkImage.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.h:30: /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h: In instantiation of ‘vnl_matrix_fixed::signed_t, num_rows, num_cols> vnl_matrix_fixed::operator-() const [with T = double; unsigned int num_rows = 3; unsigned int num_cols = 3; typename vnl_numeric_traits::signed_t = double]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:176:37: required from here 176 | vnl_vector_fixed Ti = -Ri * T; | ^~ /usr/include/ITK-5.4/vnl/vnl_matrix_fixed.h:374:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 374 | for(int i=0; i(double*, double*, double*)double*’, inlined from ‘std::__uninitialized_copy_a(double*, double*, double*, std::allocator&)double*’ at /usr/include/c++/16/bits/stl_uninitialized.h:661:37, inlined from ‘std::vector >::_M_range_initialize_n(double*, double*, unsigned long)void’ at /usr/include/c++/16/bits/stl_vector.h:1979:37, inlined from ‘std::vector >::_M_range_initialize(double*, double*, std::forward_iterator_tag)void’ at /usr/include/c++/16/bits/stl_vector.h:1964:25, inlined from ‘std::vector >::vector(double*, double*, std::allocator const&)’ at /usr/include/c++/16/bits/stl_vector.h:741:23, inlined from ‘MyMatrix::getPadeCoefficients(unsigned int)’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:403:40: /usr/include/c++/16/bits/stl_uninitialized.h:294:31: warning: dangling pointer ‘c_5’ to ‘d’ may be used [-Wdangling-pointer=] 294 | __builtin_memcpy(std::__niter_base(__result), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 | std::__niter_base(__first), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 | __n * sizeof(_ValT)); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp: In function ‘MyMatrix::getPadeCoefficients(unsigned int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_robust_register/MyMatrix.cpp:366:12: note: ‘d’ declared here 366 | double d[] = | ^ [593/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segment -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -MF mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o.d -o mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segment/mri_segment.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segment/mri_segment.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [594/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -MF mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o.d -o mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp:165: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segreg/mri_segreg.cpp:176: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ [595/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -MF mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o.d -o mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:49: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:50: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:60: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp: In function ‘int LoadDavidsTable(char*, int**, double**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_stats2seg/mri_stats2seg.cpp:388:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 388 | for (n=strlen(segname)-4;n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_si_prep/mri_si_prep.cpp:80:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 80 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [597/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_tessellate/CMakeFiles/ico_supersample.dir/ico_supersample.cpp.o -MF mri_tessellate/CMakeFiles/ico_supersample.dir/ico_supersample.cpp.o.d -o mri_tessellate/CMakeFiles/ico_supersample.dir/ico_supersample.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp: In function ‘void icosa()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp:73:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 73 | fgets(line,3,stdin); | ~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp:140:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 140 | fgets(line, 50, stdin); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp:145:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 145 | fgets(line,50,stdin); | ~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/ico_supersample.cpp:174:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 174 | fgets(name,2000,stdin); | ~~~~~^~~~~~~~~~~~~~~~~ [598/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -MF mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o.d -o mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mris_sphshapepvf.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2vol/mri_surf2vol.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [599/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segstats -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segstats/CMakeFiles/mri_segstats.dir/mri_segstats.cpp.o -MF mri_segstats/CMakeFiles/mri_segstats.dir/mri_segstats.cpp.o.d -o mri_segstats/CMakeFiles/mri_segstats.dir/mri_segstats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:62: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:63: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:79: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:34:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 34 | { | ^ | GTMSEG /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:53:9: note: type is not C-compatible because ‘GTMSEG::mergesegfile’ has default member initializer 53 | char *mergesegfile=NULL; | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp: In function ‘MRI* MRIrescaleBySeg(MRI*, MRI*, std::vector, double, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:2669:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2669 | for(int k=0; k < segids.size(); k++) printf("%2d ",segids[k]); | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:2679:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2679 | for(int k=0; k < segids.size(); k++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segstats/mri_segstats.cpp:1589:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1589 | fscanf(fptmp,"%lf",&stiv); | ~~~~~~^~~~~~~~~~~~~~~~~~~ [600/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -MF mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o.d -o mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:310: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:318: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surf2surf/mri_surf2surf.cpp:515:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 515 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [601/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -MF mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o.d -o mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:190:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 190 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfcluster/mri_surfcluster.cpp:1060:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1060 | fscanf(fp,"%lf",&fwhm); | ~~~~~~^~~~~~~~~~~~~~~~ [602/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_tessellate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -MF mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o.d -o mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/mri_tessellate.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_tessellate/mri_tessellate.cpp:82: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [603/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_seg_overlap -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -MF mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o.d -o mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap/mri_seg_overlap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seg_overlap/mri_seg_overlap.cpp:16: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [604/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -MF mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o.d -o mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_voldiff/mri_voldiff.cpp:90:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [605/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -MF mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o.d -o mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/icosahedron.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp:46: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp:51: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_vol2surf/mri_vol2surf.cpp:61: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ [606/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -MF mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o.d -o mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp:9: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_validate_skull_stripped.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ [607/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -MF mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o.d -o mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_vol2vol/mri_vol2vol.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_vol2vol/mri_vol2vol.cpp:469: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [608/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_anatomical_stats -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -MF mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o.d -o mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_anatomical_stats/mris_anatomical_stats.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [609/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_annot_diff -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -MF mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o.d -o mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_annot_diff/mris_annot_diff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_annot_diff/mris_annot_diff.cpp:4: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [610/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_ca_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -MF mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o.d -o mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_label/mris_ca_label.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ [611/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_calc -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -MF mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o.d -o mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:24:9: warning: ‘_ISOC99_SOURCE’ redefined 24 | #define _ISOC99_SOURCE | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/16/x86_64-redhat-linux/bits/os_defines.h:39, from /usr/include/c++/16/x86_64-redhat-linux/bits/c++config.h:2677, from /usr/include/c++/16/cstdint:40, from : /usr/include/features.h:222:10: note: this is the location of the previous definition 222 | # define _ISOC99_SOURCE 1 | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp: In function ‘short int CURV_copy(float*, float*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:1128:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 1128 | for(i=0; in_points; n++) | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp: In function ‘e_FILEACCESS CURV_fileRead(char*, long unsigned int*, float**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_calc/mris_calc.cpp:2006:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2006 | for(i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_convert/mris_convert.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [613/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -MF mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o.d -o mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [614/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_curvature -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -MF mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o.d -o mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp: In function ‘int MRIScomputeNeighbors(MRI_SURFACE*, float)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:674:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 674 | for (n = 0 ; n < nbrs ; n++) | ~~^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature/mris_curvature.cpp:717:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 717 | for (n = 0 ; n < nbrs ; n++) | ~~^~~~~~ [615/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -MF mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o.d -o mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcautils.hpp:23, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [616/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -MF mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o.d -o mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_divide_parcellation/mris_divide_parcellation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_divide_parcellation/mris_divide_parcellation.cpp:119: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [617/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_euler_number -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -MF mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o.d -o mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_euler_number/mris_euler_number.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_euler_number/mris_euler_number.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [618/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -MF mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o.d -o mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature_stats/mris_curvature_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_curvature_stats/mris_curvature_stats.cpp:41: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [619/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -MF mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o.d -o mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_fix_topology.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_fix_topology.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [620/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_defects_pointset -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -MF mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o.d -o mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset/mris_defects_pointset.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_defects_pointset/mris_defects_pointset.cpp:7: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [621/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_fix_topology -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -MF mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o.d -o mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_remove_intersection.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fix_topology/mris_remove_intersection.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [622/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -MF mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o.d -o mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:92: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:94: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_diff/mris_diff.cpp:383:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [623/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_inflate -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -MF mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o.d -o mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_inflate/mris_inflate.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_inflate/mris_inflate.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [624/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_jacobian -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -MF mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o.d -o mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_jacobian/mris_jacobian.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_jacobian/mris_jacobian.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [625/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -MF mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o.d -o mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:55, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_info/mris_info.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [626/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -MF mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o.d -o mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:140: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:141: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:151: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:214:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 214 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘label2annotationV2()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:30: warning: ‘%s’ directive writing between 1 and 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 966 | sprintf(report, "%s%s%d", report, (mapped_count) ? ", " : " ", labelmapped); | ^~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:27: note: directive argument in the range [0, 2147483647] 966 | sprintf(report, "%s%s%d", report, (mapped_count) ? ", " : " ", labelmapped); | ^~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : In function ‘sprintf’, inlined from ‘label2annotationV2()’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:966:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 3 and 1036 bytes into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/include/bits/stdio2.h:30:34: warning: ‘__sprintf_chk’ argument 5 overlaps destination object ‘report’ [-Wrestrict] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp: In function ‘label2annotationV2()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label2annot/mris_label2annot.cpp:957:12: note: destination object referenced by ‘restrict’-qualified argument 1 was declared here 957 | char report[1024] = {'\0'}; | ^~~~~~ [627/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -MF mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o.d -o mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_left_right_register/mris_left_right_register.cpp:265:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 265 | for (sno = 0; sno < SURFACES ; sno++) | ^ [628/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_target_pos.cpp:435:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 435 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [629/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -MF mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o.d -o mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mri_stopmask.cpp:68:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 68 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [630/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_autodet_gwstats.cpp:86:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 86 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [631/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_refine_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_refine_surfaces.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [632/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_register -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -MF mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o.d -o mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:47: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:391:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 391 | for (sno = 0; sno < SURFACES ; sno++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register/mris_register.cpp:158:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 158 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [633/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_mef_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_mef_surfaces.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [634/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_smooth -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -MF mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o.d -o mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_smooth/mris_smooth.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_smooth/mris_smooth.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [635/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_make_surfaces.cpp:54: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTarget(MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] > (1.0/pow(10,this->minPGrey)) && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:202:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 202 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > (1.0/pow(10,this->minPGrey)) && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:248:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 248 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:280:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 280 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:291:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:303:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 303 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTargetO(MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:350:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 350 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:362:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 362 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] >1.0e-20 && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:461:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > 1e-15 && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:507:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 507 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:539:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 539 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:550:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 550 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:562:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 562 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘std::vector > MRIS_MultimodalRefinement::GetMeanAndVariance(MRIS*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:629:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 629 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 641 | for(int n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(int i = 0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [637/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_skeletonize -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -MF mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o.d -o mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::nmasknbrs(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:117:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 117 | for(int n=0; n < nbrlist.size(); n++) if(MRIgetVoxVal(m_mask,nbrlist[n],0,0,0)>0) nnbrs++; | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘void SurfSkeleton::get_termbranch()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:124:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::get_branches()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:138:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for(int n=0; n < terminals.size(); n++){ | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:156:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | for(int k=0; k < nbrlist.size(); k++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::erodeable(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:188:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int n = 0; n < nbrlist.size(); n++) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:193:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | if(n==nbrlist.size()-1 && m==0) last0=1; | ~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::write_pointset(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:275:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 275 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::write_label(char*, char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 299 | for(int n=0; n < edgelist.size(); n++){ | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In member function ‘int SurfSkeleton::skeletonize()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:355:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 355 | for(int eno=0; eno < edgelist.size(); eno++){ | ~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_skeletonize/mris_skeletonize.cpp:393:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [638/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -MF mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o.d -o mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_sphere.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_sphere.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [639/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_sphere -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -MF mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o.d -o mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_remove_negative_vertices.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_metricProperties.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_project.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sphere/mris_remove_negative_vertices.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [640/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/face.cpp [641/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -MF mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o.d -o mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_surface_stats/mris_surface_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_surface_stats/mris_surface_stats.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [642/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/globals.cpp [643/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/loop.cpp [644/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -MF mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o.d -o mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_thickness.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_thickness.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [645/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -MF mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o.d -o mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_gradient.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_gradient.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [646/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.cpp:16: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:76:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [647/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/patchdisk.cpp [648/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/segment.cpp [649/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -MF mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o.d -o mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness_diff/mris_thickness_diff.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness_diff/mris_thickness_diff.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [650/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -MF mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o.d -o mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness/mris_intensity_profile.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [651/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/vertex.cpp [652/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_make_surfaces -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-unused-variable -Wno-unused-local-typedefs -Wno-reorder -fopenmp -MD -MT mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -MF mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o.d -o mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:113: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:114: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:127: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTarget(MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:106:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 106 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 186 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] > (1.0/pow(10,this->minPGrey)) && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:202:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 202 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 246 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > (1.0/pow(10,this->minPGrey)) && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:248:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 248 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:280:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 280 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:291:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 291 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:303:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 303 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘void MRIS_MultimodalRefinement::getTargetO(MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:350:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 350 | for(int i=0;invertices;j++) | ~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:362:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 362 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 443 | for(int t=-this->numberOfSteps; (t<=this->numberOfSteps || (ps[t+numberOfSteps-1] >1.0e-20 && t +numberOfSteps< ps.size()));t++) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:461:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 461 | for(int k=0;k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 505 | for(int i=1;(i< numberOfSteps+1 || ( ps[i-1] > 1e-15 && i < ps.size() -1));i++) | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:507:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 507 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:539:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 539 | if (vertexDebug ==j) | ~~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:550:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 550 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:562:63: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 562 | if(vertexDebug==j) | ~~~~~~~~~~~^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h: In member function ‘std::vector > MRIS_MultimodalRefinement::GetMeanAndVariance(MRIS*, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/resurf/Code/mris_multimodal_refinement.h:629:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 629 | for(int i=0;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 641 | for(int n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 789 | for(int i = 0; i >, int, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:2101:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2101 | for(int n=0; n < crslist.size(); n++){ | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_surfaces/mris_place_surface.cpp:339:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 339 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [653/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topo_fixer.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topo_fixer.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [654/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/surface.cpp:21: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/fastloop.h:76:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 76 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [655/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o -MF mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o.d -o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_topo_fixer/mris_topology.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [656/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [657/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [658/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:165:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 165 | for (i = 0; i < 4; i++) printf ("%10d", hdr.dime.dim[i + 1]); printf ("\n"); | ^~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:165:71: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 165 | for (i = 0; i < 4; i++) printf ("%10d", hdr.dime.dim[i + 1]); printf ("\n"); | ^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:114:30: warning: ‘.hdr’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 114 | sprintf (imgfile, "%s.hdr", imgroot); | ^~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:114:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 260 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:182:30: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 182 | sprintf (imgfile, "%s.img", imgroot); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/analyzeto4dfp.c:182:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 5 and 260 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [659/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [660/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [661/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [662/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -MF 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_vtk.dir/cmd_line_interface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/cmd_line_interface.cpp [664/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:138:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 138 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:23: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:138:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:141:32: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 141 | sprintf (outfile, "%s%s.img", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:141:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:217:32: warning: ‘.hdr’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 217 | sprintf (outfile, "%s%s.hdr", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:217:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:225:34: warning: ‘.img’ directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 225 | sprintf (outfile, "%s%s.img", imgroot, trailer); | ^~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/4dfptoanalyze.c:225:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 5 or more bytes (assuming 260) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [665/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [666/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c: In function ‘Inithdr’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:83:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 244 [-Wstringop-truncation] 83 | strncpy (phdr->hist.exp_time, string + 11, 9); | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:84:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 235 [-Wstringop-truncation] 84 | strncpy (phdr->hist.generated, string + 20, 9); | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:92:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 255 [-Wstringop-truncation] 92 | strncpy (phdr->hist.originator, string, 9); | ^ [667/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [668/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [669/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:90:38: warning: ‘_flip’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 90 | sprintf (outroot, "%s_flip", imgroot); | ^~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:90:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:99:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 99 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/flip_4dfp.c:99:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [670/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [671/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -MF talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [672/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_paint -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -MF mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o.d -o mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mrisp_paint/mrisp_paint.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mrisp_paint/mrisp_paint.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [673/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [674/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [675/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:94:30: warning: ‘.4dfp.img’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 94 | sprintf (imgfile, "%s.4dfp.img", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:18: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:94:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:98:54: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 98 | if (!strlen (outroot)) sprintf (outroot, "%sz", imgroot); | ^ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/zero_lt_4dfp.c:98:25: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 2 and 257 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [676/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/talairach_afd -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -MF talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o.d -o talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘VECTOR* ReadMeanVect(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:383:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘MATRIX* ReadCovMat(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:437:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 437 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp: In function ‘double* LoadProbas(char*, int*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:561:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 561 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_afd/talairach_afd.cpp:596:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 596 | fgets(tmpstr,1000,fp); | ~~~~~^~~~~~~~~~~~~~~~ [677/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [678/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [679/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [680/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c: In function ‘Inithdr’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:83:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 244 [-Wstringop-truncation] 83 | strncpy (phdr->hist.exp_time, string + 11, 9); | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:84:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 235 [-Wstringop-truncation] 84 | strncpy (phdr->hist.generated, string + 20, 9); | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Inithdr.c:92:9: warning: ‘strncpy’ output may be truncated copying 9 bytes from a string of length 255 [-Wstringop-truncation] 92 | strncpy (phdr->hist.originator, string, 9); | ^ [681/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:62:25: warning: variable ‘verbose’ set but not used [-Wunused-but-set-variable=] 62 | int verbose = 0; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:94:30: warning: ‘.4dfp.ifh’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 94 | sprintf (filespc, "%s.4dfp.ifh", imgroot); | ^~~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:19: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:94:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:112:30: warning: ‘.4dfp.hdr’ directive writing 9 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 112 | sprintf (filespc, "%s.4dfp.hdr", imgroot); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ifh2hdr.c:112:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 265 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [682/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_novtk.dir/mris_volmask_old.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:48: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [683/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [684/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [685/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [686/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:148:64: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 148 | if (!strlen (outroot)) sprintf (outroot, "%s_%s", imgroot, trailer); | ^ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:23: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/gauss_4dfp.c:148:26: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [687/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3dd.c [688/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -MF talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [689/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_open_quiet’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:69:42: warning: ‘.conc’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 69 | sprintf (conc_block->lstfile, "%s.conc", conc_block->lstroot); | ^~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:19: In function ‘sprintf’, inlined from ‘conc_open_quiet’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:69:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_open’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:129:42: warning: ‘.conc’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 129 | sprintf (conc_block->lstfile, "%s.conc", conc_block->lstroot); | ^~~~~ In function ‘sprintf’, inlined from ‘conc_open’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:129:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 6 and 261 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c: In function ‘conc_new’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:253:45: warning: ‘.conc’ directive writing 5 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 253 | sprintf (conc_block->outfile, "%s_%s.conc", conc_block->lstroot, trailer); | ^~~~~ In function ‘sprintf’, inlined from ‘conc_new’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/conc.c:253:2: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 7 or more bytes (assuming 262) into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [690/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [691/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [692/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [693/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [694/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [695/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [696/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [697/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [698/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [699/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:582:20: 582 | 999 format(44h0array bounds exceeded within subroutine fft) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:626:21: 626 | 9999 FORMAT (33H ERROR - ZERO IN REALS PARAMETERS, 2I10) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:743:21: 743 | 9999 FORMAT (33H ERROR - ZERO IN REALT PARAMETERS, 3I10, I9) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [700/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [701/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_VTK -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/MRISOBBTree.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:244:19: warning: ‘void omp_set_nested(int)’ is deprecated [-Wdeprecated-declarations] 244 | omp_set_nested(1); // Enable nested parallelism | ~~~~~~~~~~~~~~^~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/romp_support.h:34, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:50: /usr/lib/gcc/x86_64-redhat-linux/16/include/omp.h:265:13: note: declared here 265 | extern void omp_set_nested (int) __GOMP_NOTHROW __GOMP_DEPRECATED_5_0; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘void Cleanup(std::vector&, std::vector&)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:958:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 958 | for (int n = 0; n < surfDistVector.size(); n++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp: In function ‘void SaveSurfaceDistances(std::vector&, std::string, std::string)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask.cpp:970:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 970 | for (int n = 0; n < surfDistVector.size(); n++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ [702/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:127:36: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 127 | sprintf (filespc, "%s.4dfp.img", imgroot[j]); | ^~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:22: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:127:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:164:36: warning: ‘%s’ directive writing up to 511 bytes into a region of size 256 [-Wformat-overflow=] 164 | sprintf (filespc, "%s.4dfp.img", imgroot[j]); | ^~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:164:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 10 and 521 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [703/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [704/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [705/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [706/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [707/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [708/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [709/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [710/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [711/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [712/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [713/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [714/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:582:20: 582 | 999 format(44h0array bounds exceeded within subroutine fft) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:626:21: 626 | 9999 FORMAT (33H ERROR - ZERO IN REALS PARAMETERS, 2I10) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:743:21: 743 | 9999 FORMAT (33H ERROR - ZERO IN REALT PARAMETERS, 3I10, I9) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [715/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [716/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [717/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DNO_GUI -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -MF tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o.d -o tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:108: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:117: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void make_backup(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:3958:11: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3958 | system(command); | ~~~~~~^~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void goto_point(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4040:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4040 | fscanf(fp,"%f %f %f",&xpt,&ypt,&zpt); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_images(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4455:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4455 | fscanf(fptr,"%*s %d",&imnr0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4456:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4456 | fscanf(fptr,"%*s %d",&imnr1); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4457:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4457 | fscanf(fptr,"%*s %d",&ptype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4458:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4458 | fscanf(fptr,"%*s %d",&xnum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4459:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4459 | fscanf(fptr,"%*s %d",&ynum); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4460:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4460 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4461:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4461 | fscanf(fptr,"%*s %f",&ps); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4462:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4462 | fscanf(fptr,"%*s %f",&st); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4463:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4463 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4464:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4464 | fscanf(fptr,"%*s %f",&xx0); /* strtx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4465:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4465 | fscanf(fptr,"%*s %f",&xx1); /* endx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4466:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4466 | fscanf(fptr,"%*s %f",&yy0); /* strty */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4467:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4467 | fscanf(fptr,"%*s %f",&yy1); /* endy */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4468:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4468 | fscanf(fptr,"%*s %f",&zz0); /* strtz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4469:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4469 | fscanf(fptr,"%*s %f",&zz1); /* endz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4512:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4512 | fread(buf,sizeof(char),bufsize,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_second_images(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4553:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4553 | fscanf(fptr,"%*s %d",&imnr0_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4554:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4554 | fscanf(fptr,"%*s %d",&imnr1_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4555:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4555 | fscanf(fptr,"%*s %d",&ptype); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4556:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4556 | fscanf(fptr,"%*s %d",&xnum_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4557:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4557 | fscanf(fptr,"%*s %d",&ynum_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4558:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4558 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4559:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4559 | fscanf(fptr,"%*s %lf",&ps_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4560:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4560 | fscanf(fptr,"%*s %lf",&st_2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4561:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4561 | fscanf(fptr,"%*s %*f"); | ~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4562:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4562 | fscanf(fptr,"%*s %f",&xx0_2); /* strtx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4563:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4563 | fscanf(fptr,"%*s %f",&xx1_2); /* endx */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4564:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4564 | fscanf(fptr,"%*s %f",&yy0_2); /* strty */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4565:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4565 | fscanf(fptr,"%*s %f",&yy1_2); /* endy */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4566:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4566 | fscanf(fptr,"%*s %f",&zz0_2); /* strtz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4567:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4567 | fscanf(fptr,"%*s %f",&zz1_2); /* endz */ | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4612:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4612 | fread(buf_2,sizeof(float),bufsize_2,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘void read_float_images(float***, char*, int, int, int, int, short int**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4780:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4780 | fread(*buf,sizeof(char),HEADERSIZE,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:4805:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4805 | fread(*buf,sizeof(short),bufsize,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp: In function ‘MATRIX* Load4x4(char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tkregister2/tkregister2.cpp:5346:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5346 | fgets(s,1000,fp); | ~~~~~^~~~~~~~~~~ [718/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [719/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [720/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:165:132: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 165 | raram(j,jndex)=1. | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: note: ‘jndex’ was declared here 124 | jndex=3 | ^~~~~ [721/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [722/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_volmask -I/usr/include/ITK-5.4 -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o -MF mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o.d -o mris_volmask/CMakeFiles/mris_volmask_vtk.dir/mris_volmask_old.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:48: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp: In function ‘void ComputeSurfaceDistanceFunction(MRIS*, float, MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:664:18: warning: ‘vtkTypeBool vtkCellArray::Allocate(vtkIdType, vtkIdType)’ is deprecated: Use AllocateEstimate or AllocateExact instead. [-Wdeprecated-declarations] 664 | faces->Allocate( mris->nfaces ); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volmask/mris_volmask_old.cpp:36: /usr/include/vtk/vtkCellArray.h:228:15: note: declared here 228 | vtkTypeBool Allocate(vtkIdType sz, vtkIdType vtkNotUsed(ext) = 1000) | ^~~~~~~~ [723/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [724/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [725/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c:112:51: warning: variable ‘vdim’ set but not used [-Wunused-but-set-variable=] 112 | int xdim, ydim, zdim, vdim, idim, isbig, isbigm, orientm; | ^~~~ [726/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [727/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [728/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [729/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [730/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [731/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [732/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o -MF talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [733/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [734/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:25:38: 25 | real*4 flips(3,3)/-1.,+1.,-1., ! transverse | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:26:38: 26 | & -1.,+1.,+1., ! coronal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:27:38: 27 | & +1.,+1.,+1./ ! sagittal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:29:16: 29 | k=iori-1 ! ifh.orientation | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:53:132: 53 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:55:132: 55 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:44:21: 44 | character*256 rcsid/'$Id: ft4imgo.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [735/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f.o [736/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [737/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:10: 3 | a=x'7fffffff' | 1 Warning: Hexadecimal constant at (1) uses nonstandard X instead of Z /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:8: 3 | a=x'7fffffff' | 1 Warning: BOZ literal constant at (1) is neither a DATA statement value nor an actual argument of INT/REAL/DBLE/CMPLX intrinsic subprogram [738/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:28:132: 28 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:30:132: 30 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:68:132: 68 | 1 ldefined=ldefined.and.ix(k).gt.0.and.ix(k).le.mx(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgn.f:19:21: 19 | character*256 rcsid/'$Id: ft4imgn.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [739/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [740/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/compute_vox2vox.c [741/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c: In function ‘catrec’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:49: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=] 99 | sprintf (command, "cat -s %s >> %s", filerec, recfile); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:974, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:19: In function ‘sprintf’, inlined from ‘catrec’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/rec.c:99:3: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output 12 or more bytes (assuming 1035) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [742/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:18:27: 18 | integer*4 imgdim(3) ! assumed positive | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:19:27: 19 | real*4 voxdim(3) ! assumed positive | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:26:47: 26 | 1 centere(k)=voxdim(k)*float(imgdim(k)/2) ! as in cross_realign3d_4dfp | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:26:132: 26 | 1 centere(k)=voxdim(k)*float(imgdim(k)/2) ! as in cross_realign3d_4dfp | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:28:38: 28 | call img2vrt(voxdim,centere,e) ! as in cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:29:38: 29 | call vrt2img(voxdim,centere,f) ! as in cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:30:39: 30 | call img2vrt(mmppixo,centero,o) ! as in t4imgs_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:31:39: 31 | call vrt2img(mmppixt,centert,t) ! as in t4imgs_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:33:36: 33 | call matmul(t4atl,o,temp1,4) ! target (atlas) FORTRAN index to virtual | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:34:36: 34 | call matmul(t,temp1,temp2,4) ! to source FORTRAN index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:35:38: 35 | call matmul(f2c,temp2,temp1,4) ! to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:36:36: 36 | call matmul(e,temp1,temp2,4) ! to virtual | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:37:40: 37 | call matmul(t4mat,temp2,temp1,4) ! frame align as computed by cross_realign3d_4dfp | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:38:33: 38 | call matmul(f,temp1,t4,4) ! to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:43:22: 43 | real*4 t4(4,4) ! target FORTRAN index to source C index | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:44:34: 44 | real*4 imgt(nxt,nyt,nzt,4) ! source image and spline coefficients | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:45:32: 45 | real*4 imgo(nxo,nyo,nzo) ! target | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:55:132: 55 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:57:132: 57 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4ixyz.f:48:17: 48 | logical*4 ldebug/.false./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] [743/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cgauss3d.c [744/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [745/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:33:132: 33 | 1 write (*, "(2i10,f10.4)")n,np,float(np)/float(n) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:45:132: 45 | 4 if(i.ne.7.and.npad.ge.n+2*margin)return | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:46:132: 46 | 2 m=m*2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:60:21: 60 | l=nzp-nz-2*mz ! 0 or 1 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:74:132: 74 | do 1 jp=1,nyp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:76:132: 76 | do 1 ip=1,nxp | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:97:132: 97 | do 1 j=1,ny | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:99:132: 99 | do 1 i=1,nx | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgpad.f:101:132: 101 | 1 imag(i,j,k)=imagp(ip,jp,kp) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) [746/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/endianio.c [747/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/Getifh.c [748/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:582:20: 582 | 999 format(44h0array bounds exceeded within subroutine fft) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:626:21: 626 | 9999 FORMAT (33H ERROR - ZERO IN REALS PARAMETERS, 2I10) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:743:21: 743 | 9999 FORMAT (33H ERROR - ZERO IN REALT PARAMETERS, 3I10, I9) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [749/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:17:132: 17 | 13 SUMX(N)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 13 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:19:132: 19 | 15 SUMY(J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 15 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:25:132: 25 | 44 XTERM=XTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 44 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:29:132: 29 | 48 YTERM=YTERM*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:33:132: 33 | DO 54 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:34:132: 34 | 54 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 54 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:39:132: 39 | do 61 J=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:40:132: 40 | 61 A(L)=A(L)+ARRAY(L,J)*SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 61 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:46:132: 46 | 65 ARRAY(J,K)=SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 65 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:47:132: 47 | 66 ARRAY(J,L)=SUMY(J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 66 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:48:132: 48 | 70 A(L)=DETERM(ARRAY,NTERM)/DELTA | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 70 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:52:132: 52 | DO 75 K=1,NTERM | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:53:132: 53 | 75 CHISQR=CHISQR+A(J)*A(K)*SUMX(J+K-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:70:132: 70 | 34 ARRAY(I,K)=SAVE | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 34 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:75:132: 75 | DO 46 J=K+1,NORDER | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:76:132: 76 | 46 ARRAY(I,J)=ARRAY(I,J)-ARRAY(I,K)*ARRAY(K,J)/ARRAY(K,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 46 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:96:132: 96 | 2 T=T*X(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:100:132: 100 | 10 write(*,101)N,C(N),A(N) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 10 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/polfit.f:10:21: 10 | character*256 rcsid /'$Header: /space/repo/1/dev/dev/talairach_avi/polfit.f,v 1.1 2007/05/04 22:34:03 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [750/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4scale.c [751/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:165:132: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 165 | raram(j,jndex)=1. | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: note: ‘jndex’ was declared here 124 | jndex=3 | ^~~~~ [752/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:29:132: 29 | 1 param0(i)=-2.*param0(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:77:132: 77 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:79:132: 79 | do 1 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:80:132: 80 | 1 rot3(i,j)=rot3(i,j)+rot2(i,k)*rot1(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:83:132: 83 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:84:132: 84 | 2 param3(i)=param3(i)+rot2(i,j)*param1(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:96:132: 96 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:97:132: 97 | 1 param1(i)=param1(i)-rot(j,i)*param0(j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:106:132: 106 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:107:132: 107 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:110:132: 110 | 2 C(I,4)=-CENTER(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:117:132: 117 | DO 1 J=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:118:132: 118 | 1 C(I,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:121:132: 121 | 2 C(I,4)=CENTER(I)/MMPPIX(I) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:148:132: 148 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:163:132: 163 | 7 TROT(4,J)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 7 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:173:132: 173 | 2 b(i,j)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:174:132: 174 | 1 b(i,i)=exp(stretch(i)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:176:132: 176 | do 3 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:178:132: 178 | do 3 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:179:132: 179 | 3 c(i,j)=c(i,j)+a(k,i)*b(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:183:132: 183 | do 5 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:184:132: 184 | 5 t(i,j)=t(i,j)+c(i,k)*a(k,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/param6opr.f:186:132: 186 | 4 t(4,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) [753/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:23:132: 23 | do 1 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:24:132: 24 | 1 t(i,j)=rand(0) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:26:132: 26 | do 2 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:28:132: 28 | do 2 k=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:29:132: 29 | 2 q(i,j)=q(i,j)+t(i,k)*t(j,k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:31:132: 31 | do 4 j=1,3 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:32:132: 32 | 4 r(i,j)=q(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:35:132: 35 | 3 write(*,101)(r(i,k),k=1,3),(q(i,k),k=1,3),(w(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:42:132: 42 | 5 write(*,101)(q(i,k),k=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 5 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:50:132: 50 | 40 P(L,L)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 40 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:52:132: 52 | DO 41 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:54:132: 54 | 41 P(M,L)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:57:132: 57 | DO 30 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:58:132: 58 | 30 THR=THR+A(L,M)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:99:132: 99 | DO 48 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:100:132: 100 | 48 OFFD=OFFD+ABS(A(L,M)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 48 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:103:132: 103 | DO 185 M=L+1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 185 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/eigen.f:111:132: 111 | 180 P(I,M)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 180 at (1) [754/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:25:132: 25 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:27:132: 27 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:28:132: 28 | 2 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:34:132: 34 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:37:132: 37 | 1 X=X+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:38:132: 38 | 2 C(I,J)=X | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:44:132: 44 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:46:132: 46 | DO 1 K=1,M | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:47:132: 47 | 1 C(I,J)=C(I,J)+A(I,K)*B(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:53:132: 53 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:54:132: 54 | 1 B(I,J)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:60:132: 60 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:61:132: 61 | 1 B(J,I)=A(I,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:67:132: 67 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:68:132: 68 | 1 B(J,I)=CONJG(A(I,J)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:82:132: 82 | DO 30 J=K,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 30 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:95:132: 95 | 50 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 50 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:103:132: 103 | 60 A(I,J)=-T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 60 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:108:132: 108 | DO 80 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 80 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:115:132: 115 | 100 D=D*AMAX | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 100 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:124:132: 124 | 110 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 110 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:131:132: 131 | 120 A(I,J)=T | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 120 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:140:132: 140 | DO 2 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:142:132: 142 | DO 2 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:143:132: 143 | 2 G(I,J)=G(I,J)+A(K,I)*A(K,J) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:146:132: 146 | DO 1 J=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:148:132: 148 | DO 1 K=1,N | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:149:132: 149 | 1 B(I,J)=B(I,J)+G(I,K)*A(J,K) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:128:5: 128 | 113 DO 120 J=1,N | 1 Warning: Label 113 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:121:5: 121 | 105 DO 110 I=1,N | 1 Warning: Label 105 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:111:5: 111 | 81 DO 90 J=1,N | 1 Warning: Label 81 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:107:5: 107 | 71 DO 80 I=1,N | 1 Warning: Label 71 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:100:5: 100 | 53 DO 60 I=1,N | 1 Warning: Label 53 at (1) defined but not used [-Wunused-label] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/matopr.f:92:5: 92 | 43 DO 50 J=1,N | 1 Warning: Label 43 at (1) defined but not used [-Wunused-label] [755/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:20:26: 20 | parameter (dd=7.5) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:26:42: 26 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:47:132: 47 | do 81 j=-nj,nj | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:49:132: 49 | do 81 i=-ni,ni | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:24:17: 24 | logical*4 ldebug/.true./ | 1~~~~~ Warning: Unused variable ‘ldebug’ declared at (1) [-Wunused-variable] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f: In function ‘ffind_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[0]’ may be used uninitialized [-Wmaybe-uninitialized] 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: warning: ‘garam[1]’ may be used uninitialized [-Wmaybe-uninitialized] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:63:132: warning: ‘garam[2]’ may be used uninitialized [-Wmaybe-uninitialized] 63 | param(jj)=garam(jj) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ffind.f:22:27: note: ‘garam[2]’ was declared here 22 | real*4 taram(nterm),garam(nterm) | ^~~~~~~~~~~~ [756/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:113:18: 113 | real*4 eps ! +/- interval over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:126:132: 126 | 2 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:138:132: 138 | 1 xe(k)=x(k) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalm.f:21:21: 21 | character*256 rcshdr | 1~~~~~ Warning: Unused variable ‘rcshdr’ declared at (1) [-Wunused-variable] [757/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:10: 3 | a=x'7fffffff' | 1 Warning: Hexadecimal constant at (1) uses nonstandard X instead of Z /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:3:8: 3 | a=x'7fffffff' | 1 Warning: BOZ literal constant at (1) is neither a DATA statement value nor an actual argument of INT/REAL/DBLE/CMPLX intrinsic subprogram [758/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:25:38: 25 | real*4 flips(3,3)/-1.,+1.,-1., ! transverse | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:26:38: 26 | & -1.,+1.,+1., ! coronal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:27:38: 27 | & +1.,+1.,+1./ ! sagittal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:29:16: 29 | k=iori-1 ! ifh.orientation | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:53:132: 53 | do 41 ky=1,nyo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:55:132: 55 | do 41 kx=1,nxo | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:44:21: 44 | character*256 rcsid/'$Id: ft4imgo.f,v 1.1 2007/05/04 22:33:59 nicks Exp $'/ | 1~~~~ Warning: Unused variable ‘rcsid’ declared at (1) [-Wunused-variable] [759/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:54:132: 54 | 1 ldefined=ldefined.and.((mx(k).eq.1).or.(ix(k).gt.0).and.(ix(k).lt.mx(k))) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:135:132: 135 | 84 y(i)=-sense*v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:173:30: 173 | real*4 n1(3)/0.,0.,1./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:174:30: 174 | real*4 n2(3)/0.,1.,0./ ! for initial t, n guess | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:184:32: 184 | a=sqrt(dot(param,param)) ! compute binormal unit vector | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:230:25: 230 | do 9 k=-nk-1,nk+1 ! sample image along normal | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:238:21: 238 | do 8 k=-nk,nk ! differentiate | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:240:132: 240 | 8 dv(k)=v(k+1)-v(k-1) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 8 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:245:28: 245 | q=.5*coef(1)/coef(2) ! find gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:251:16: 251 | do i=1,3 ! move current edge point onto gradient extremum | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:259:19: 259 | do j=1,np-2 ! edge closed? | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgvalx.f:270:16: 270 | do i=1,3 ! advance trace | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [760/1580] /usr/bin/gcc -DHAVE_GFORTRAN -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -MD -MT talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o -MF talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o.d -o talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/cflip.c [761/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:144:132: 144 | do 1 j=1,6 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:145:132: 145 | 1 b6(j,i)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:209:52: 209 | lreflect=.not.lstretch.and.iand(mode,'40000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:210:52: 210 | lsag= .not.lstretch.and.iand(mode,'80000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:212:16: 212 | do l=1,4 ! initialize a(4,4) to I | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:220:24: 220 | if(lstretch)then ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:243:12: 243 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:244:21: 244 | if(l3d)then ! 3d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:261:27: 261 | if(lvoxsiz)then ! 3d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:262:23: 262 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:274:14: 274 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:281:27: 281 | if(lvoxsiz)then ! 2d voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:282:23: 282 | mskbit=16 ! object image voxel size adjust dis-enable bits | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:295:13: 295 | endif ! end .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:315:132: 315 | do 1 j=1,4 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:316:132: 316 | 1 a(i,j)=t4(i,j) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:340:25: 340 | if(lvoxsiz)then ! start voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:343:23: 343 | if(l3d)then ! process 3d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:351:16: 351 | else ! process 2d voxsiz | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:360:15: 360 | endif ! end voxsiz processing | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:35: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:372:33: 372 | mode=ior(mode,'40000'x) ! set negative determinant bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:35: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:382:33: 382 | mode=ior(mode,'80000'x) ! set sagittal bit | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:384:21: 384 | if(l3d)then ! 3d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:386:14: 386 | else ! 2d rot->ang | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:391:12: 391 | else ! stretch mode | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:411:38: 411 | real*4 tcenter(3)/0.,-23.5,5./ ! Talairach space approximate geometric center | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:412:30: 412 | real*4 pntn(3),pntc(3) ! domain normalized input coordinates | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] [762/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:148:33: 148 | 99 if (.false.) write(*,"('m='i2,' nfac ',13i2)")m,nfac | 1 Warning: Legacy Extension: Missing comma in FORMAT string at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:582:20: 582 | 999 format(44h0array bounds exceeded within subroutine fft) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:626:21: 626 | 9999 FORMAT (33H ERROR - ZERO IN REALS PARAMETERS, 2I10) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:743:21: 743 | 9999 FORMAT (33H ERROR - ZERO IN REALT PARAMETERS, 3I10, I9) | 1 Warning: The H format specifier at (1) is a Fortran 95 deleted feature /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:163:12: 163 | a(k2)=a(kk)-ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:164:12: 164 | b(k2)=b(kk)-bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:165:12: 165 | a(kk)=a(kk)+ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:166:12: 166 | b(kk)=b(kk)+bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:179:12: 179 | a(k2)=c1*ak-s1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:180:12: 180 | b(k2)=s1*ak+c1*bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:205:12: 205 | a(kk)=ak+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:206:12: 206 | b(kk)=bk+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:211:12: 211 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:212:12: 212 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:213:12: 213 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:214:12: 214 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:233:12: 233 | a(kk)=akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:239:12: 239 | b(kk)=bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:247:12: 247 | 430 a(k1)=akp*c1-bkp*s1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:248:12: 248 | b(k1)=akp*s1+bkp*c1 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:249:12: 249 | a(k2)=ajp*c2-bjp*s2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:250:12: 250 | b(k2)=ajp*s2+bjp*c2 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:251:12: 251 | a(k3)=akm*c3-bkm*s3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:252:12: 252 | b(k3)=akm*s3+bkm*c3 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:275:12: 275 | 460 a(k1)=akp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:276:12: 276 | b(k1)=bkp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:277:12: 277 | a(k2)=ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:278:12: 278 | b(k2)=bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:279:12: 279 | a(k3)=akm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:280:12: 280 | b(k3)=bkm | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:301:12: 301 | a(kk)=aa+akp+ajp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:302:12: 302 | b(kk)=bb+bkp+bjp | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:307:12: 307 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:308:12: 308 | a(k4)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:309:12: 309 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:310:12: 310 | b(k4)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:315:12: 315 | a(k2)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:316:12: 316 | a(k3)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:317:12: 317 | b(k2)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:318:12: 318 | b(k3)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:365:12: 365 | a(kk)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:366:12: 366 | b(kk)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:388:12: 388 | a(k1)=ak-bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:389:12: 389 | b(k1)=bk+aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:390:12: 390 | a(k2)=ak+bj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:391:12: 391 | b(k2)=bk-aj | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:407:12: 407 | a(kk)=c2*ak-s2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:408:12: 408 | b(kk)=s2*ak+c2*b(kk) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:448:12: 448 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:451:12: 451 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:471:12: 471 | a(k2)=ak | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:474:12: 474 | b(k2)=bk | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:566:12: 566 | a(k1)=at(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:567:12: 567 | b(k1)=bt(k2) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:654:15: 654 | B(K) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:655:15: 655 | B(J) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:656:15: 656 | A(K) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:657:15: 657 | A(J) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:769:14: 769 | A(KK) = AA + BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:770:14: 770 | A(NT) = AA - BA | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:801:14: 801 | B(K2) = (EM-BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:802:14: 802 | B(KK) = (EM+BB)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:803:14: 803 | A(K2) = (AA-RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:804:14: 804 | A(KK) = (AA+RE)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:820:14: 820 | A(KK) = (AA+BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:821:14: 821 | B(KK) = (AA-BA)*0.5 | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f: In function ‘fft2_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fftsol.f:228:7: warning: ‘k3’ may be used uninitialized [-Wmaybe-uninitialized] 228 | k3=k2+kspan | ^~ [763/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f-pp.f -o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f.o /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:64:23: 64 | real*4 d(-nx/2:nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:65:45: 65 | real*4 g(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:66:45: 66 | real*4 h(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:70:12: 70 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:71:12: 71 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:72:12: 72 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:74:132: 74 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:75:132: 75 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:76:132: 76 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:83:22: 83 | do 3 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:84:132: 84 | do 3 iy=-ny/2,ny/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:85:132: 85 | do 3 ix=-nx/2,nx/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:89:132: 89 | 3 call splint3dvl(f,nx,ny,nz,d2xf,d2yf,d2zf,x,y,z,g(ix,iy,iz),h(ix,iy,iz)) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:91:22: 91 | do 4 ix=-nx/2,nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:92:132: 92 | 4 d(ix)=float(ix0)+del*float(ix) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:95:23: 95 | do 51 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:99:20: 99 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:100:86: 100 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(g(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:105:23: 105 | do 61 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:109:20: 109 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:110:86: 110 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(h(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:125:45: 125 | real*4 g(-nx/2:nx/2,-ny/2:ny/2,-nz/2:nz/2) | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:126:23: 126 | real*4 d(-nx/2:nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:130:12: 130 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:131:12: 131 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:132:12: 132 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:134:132: 134 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:135:132: 135 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:136:132: 136 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:143:22: 143 | do 3 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:144:132: 144 | do 3 iy=-ny/2,ny/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:145:132: 145 | do 3 ix=-nx/2,nx/2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:150:132: 150 | 3 g(ix,iy,iz)=v | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 3 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:152:22: 152 | do 4 ix=-nx/2,nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:153:132: 153 | 4 d(ix)=float(ix0)+del*float(ix) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 4 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:156:23: 156 | do 51 iz=-nz/2,nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:160:20: 160 | do iy=-ny/2,ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:161:86: 161 | write (*,"(f5.2,'|',17f5.2)")float(iy0)+del*float(iy),(g(ix,iy,iz),ix=-nx/2,nx/2) | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:210:132: 210 | do 21 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 21 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:254:132: 254 | do 31 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 31 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:301:132: 301 | do 31 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 31 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:351:132: 351 | 1 a(iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 1 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:355:132: 355 | 2 a(iz+nz*(iz+1))=1./6. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:359:132: 359 | do 11 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 11 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:446:12: 446 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:447:12: 447 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:448:12: 448 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:450:132: 450 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:451:132: 451 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:452:132: 452 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:487:132: 487 | 11 write (*,"()") | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:504:12: 504 | ix0=nx/2 | 1 Warning: Integer division truncated to constant ‘7’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:505:12: 505 | iy0=ny/2 | 1 Warning: Integer division truncated to constant ‘4’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:506:12: 506 | iz0=nz/2 | 1 Warning: Integer division truncated to constant ‘2’ at (1) [-Winteger-division] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:508:132: 508 | do 2 iy=0,ny-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:509:132: 509 | do 2 ix=0,nx-1 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:510:132: 510 | 2 f(ix,iy,iz)=0. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 2 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/spline3dvgh.f:534:132: 534 | 11 write (*,"(10f10.4)")x,v,grad,(grad(i)-test(i),i=1,3) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 11 at (1) [764/1580] /usr/bin/gfortran -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG -Jtalairach_avi -fpreprocessed -c talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f-pp.f -o talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f.o f951: Warning: Nonconforming tab character in column 1 of line 332 [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:75:26: 75 | parameter (dd=5.0) ! linear distance search increment in units of mmppix | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:76:32: 76 | parameter (da=0.0872665) ! angle in radians = +/- 5 deg search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:77:27: 77 | parameter (ds=0.06) ! stretch increment | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:78:63: 78 | real*4 raram(12,3)/dd,dd,dd,da,da,da,ds,ds,ds,0.,0.,0., ! range | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:81:31: 81 | parameter (sr=57.29578) ! degrees/radian | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:82:27: 82 | parameter (ss=100.) ! converts stretch to percent | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:83:63: 83 | real*4 saram(12,3)/1.,1.,1.,sr,sr,sr,ss,ss,ss,0.,0.,0., ! scale | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:86:24: 86 | real*4 qaram(12) ! search range | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:87:24: 87 | real*4 garam(12) ! computed gradient | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:88:24: 88 | real*4 baram(12) ! best parameters | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:107:42: 107 | if(nz2.lt.2)mode=iand(mode,not(2)) ! prevent attempt to 3d align | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:130:14: 130 | else ! .not.lstretch | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:141:16: 141 | else ! 2d | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:159:27: 159 | if(lhessian)goto 70 ! hessian branch point | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:160:15: 160 | del=5.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:174:132: 174 | 82 qaram(j)=1. | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 82 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:178:18: 178 | del=12.0 ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:181:29: 181 | del=4.+float(niter) ! 3d grid sampling interval in mm | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:31: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:184:29: 184 | mod1=ior(mode,'20000'x) ! tell imgrege to set index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:31: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:192:29: 192 | mod1=ior(mode,'10000'x) ! tell imgrege to use index in mask memory | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:202:132: 202 | 84 report(i,j)=y(i) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 84 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:215:132: 215 | 81 param(j)=taram(j)-rscale*qaram(j)*raram(j,jndex)*t | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 81 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:241:132: 241 | 88 write(*,"(12f8.4)")(report(i,j),j=1,jmax) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 88 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:294:132: 294 | 72 h=h+(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 72 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:296:132: 296 | 71 call array_w(hessian,jmax,j,j,h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 71 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:299:132: 299 | do 73 jj=j+1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 73 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:305:132: 305 | do 75 ii=-1,1,2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:310:132: 310 | 75 h=h+float(ii*i)*(1.-eta) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 75 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:312:132: 312 | 73 call array_w(hessian,jmax,jj,j,0.25*h*escale) | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 73 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:341:132: 341 | do 77 i=1,jmax | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 77 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:343:132: 343 | 77 param(j)=param(j)-h*garam(i)*qaram(j)*rscale | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 77 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:416:22: 416 | real*4 eps/1./ ! +/- interval (mm) over which to evaluate grad | 1~~~~~~~ Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:417:32: 417 | parameter (kmax=2097152) ! index in mask memory | 1 Warning: Nonconforming tab character at (1) [-Wtabs] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:425:32: 425 | lfind= iand(mode,'1000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:426:33: 426 | lsetk= iand(mode,'20000'x).ne.0 | 1 Warning: BOZ constant at (1) uses nonstandard postfix syntax /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:465:132: 465 | do 41 ky=ky1,ky2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:467:132: 467 | do 41 kx=kx1,kx2 | 1 Warning: Fortran 2018 deleted feature: Shared DO termination label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:503:132: 503 | 41 k=k+1 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 41 at (1) /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f: In function ‘fimgreg_’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:165:132: warning: ‘jndex’ may be used uninitialized [-Wmaybe-uninitialized] 165 | raram(j,jndex)=1. | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/fimgreg.f:124:11: note: ‘jndex’ was declared here 124 | jndex=3 | ^~~~~ [765/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction/retrospective_correction_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/__/MyUtils.cpp.o -MF dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/__/MyUtils.cpp.o.d -o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/__/MyUtils.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/MyUtils.cpp [766/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/retrospective_correction 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/usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:488:14: warning: comparison of constant ‘0’ with boolean expression is always true [-Wbool-compare] 488 | return t >= 0 ? t : -t; | ~~^~~~ [774/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/MainWindow.cpp.o -MF dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/MainWindow.cpp.o.d -o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/MainWindow.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction/MainWindow.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction/MainWindow.cpp: In member function ‘void MainWindow::SetupScriptPath()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction/MainWindow.cpp:102:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 102 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qfileinfo.h:9, from /usr/include/qt6/QtCore/QFileInfoList:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction/MainWindow.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/retrospective_correction/MainWindow.cpp:1: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ [781/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/connected_components -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/connected_components 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dissection_photo/connected_components/CMakeFiles/connected_components.dir/__/WidgetImageView.cpp.o.d -o dissection_photo/connected_components/CMakeFiles/connected_components.dir/__/WidgetImageView.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp In file included from /usr/include/qt6/QtCore/qglobal.h:61, from /usr/include/qt6/QtGui/qtguiglobal.h:7, from /usr/include/qt6/QtWidgets/qtwidgetsglobal.h:8, from /usr/include/qt6/QtWidgets/qwidget.h:8, from /usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | 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dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/__/WidgetImageView.cpp.o -MF dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/__/WidgetImageView.cpp.o.d -o dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/__/WidgetImageView.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp In file included from /usr/include/qt6/QtCore/qglobal.h:61, from /usr/include/qt6/QtGui/qtguiglobal.h:7, from /usr/include/qt6/QtWidgets/qtwidgetsglobal.h:8, from /usr/include/qt6/QtWidgets/qwidget.h:8, from /usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:488:14: warning: comparison of constant ‘0’ with boolean expression is always true [-Wbool-compare] 488 | return t >= 0 ? t : -t; | ~~^~~~ [807/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/fiducials_correction/fiducials_correction_autogen/include 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-Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/MainWindow.cpp.o -MF dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/MainWindow.cpp.o.d -o dissection_photo/fiducials_correction/CMakeFiles/fiducials_correction.dir/MainWindow.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp: In member function ‘void MainWindow::SetupScriptPath()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp:89:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 89 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qdir.h:11, from /usr/include/qt6/QtCore/qtemporarydir.h:9, from /usr/include/qt6/QtCore/QTemporaryDir:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/fiducials_correction/MainWindow.cpp:4: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ [808/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo 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dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/EWIEGA46WW/qrc_mask_extraction.cpp.o -MF dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/EWIEGA46WW/qrc_mask_extraction.cpp.o.d -o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/EWIEGA46WW/qrc_mask_extraction.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/EWIEGA46WW/qrc_mask_extraction.cpp [809/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogSelectFolder.cpp.o -MF dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogSelectFolder.cpp.o.d -o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogSelectFolder.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction/DialogSelectFolder.cpp [812/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/mask_extraction -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction/mask_extraction_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o -MF dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o.d -o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp In file included from /usr/include/qt6/QtCore/qglobal.h:61, from /usr/include/qt6/QtGui/qtguiglobal.h:7, from /usr/include/qt6/QtWidgets/qtwidgetsglobal.h:8, from /usr/include/qt6/QtWidgets/qwidget.h:8, from /usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:488:14: warning: comparison of constant ‘0’ with boolean expression is always true [-Wbool-compare] 488 | return t >= 0 ? t : -t; | ~~^~~~ [813/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/mask_extraction 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-std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT dummy/CMakeFiles/dummy.dir/dummy.cpp.o -MF dummy/CMakeFiles/dummy.dir/dummy.cpp.o.d -o dummy/CMakeFiles/dummy.dir/dummy.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dummy/dummy.cpp [821/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-deprecated-declarations -MD -MT dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/WidgetImageView.cpp.o -MF dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/WidgetImageView.cpp.o.d -o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/WidgetImageView.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp In file included from /usr/include/qt6/QtCore/qglobal.h:61, from /usr/include/qt6/QtGui/qtguiglobal.h:7, from /usr/include/qt6/QtWidgets/qtwidgetsglobal.h:8, from /usr/include/qt6/QtWidgets/qwidget.h:8, from /usr/include/qt6/QtWidgets/QWidget:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:1: /usr/include/qt6/QtCore/qnumeric.h: In instantiation of ‘constexpr T qAbs(const T&) [with T = bool]’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/WidgetImageView.cpp:416:72: required from here 416 | else if (m_nEditMode == EM_SELECT_MASK && qAbs(dpt.x()) < 3 && qAbs(dpt.y() < 3)) | ~~~~^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qnumeric.h:488:14: warning: comparison of constant ‘0’ with boolean expression is always true [-Wbool-compare] 488 | return t >= 0 ? t : -t; | ~~^~~~ [823/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/dissection_photo/dissection_photo/dissection_photo_autogen/include 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[-Wunused-result] 324 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qfileinfo.h:9, from /usr/include/qt6/QtCore/QFileInfoList:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp:1: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/dissection_photo/dissection_photo/MainWindow.cpp:352:14: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 352 | file.open(QFile::ReadOnly | QFile::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 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/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSLabel.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSLabel.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSLabel.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [849/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/DialogPreferences.cpp.o -MF freeview/CMakeFiles/freeview.dir/DialogPreferences.cpp.o.d -o freeview/CMakeFiles/freeview.dir/DialogPreferences.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/DialogPreferences.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_DialogPreferences.h:30, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/DialogPreferences.cpp:16: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/Interactor.cpp.o -MF freeview/CMakeFiles/freeview.dir/Interactor.cpp.o.d -o freeview/CMakeFiles/freeview.dir/Interactor.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Interactor.cpp [853/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/DialogTransformVolume.cpp.o -MF freeview/CMakeFiles/freeview.dir/DialogTransformVolume.cpp.o.d -o freeview/CMakeFiles/freeview.dir/DialogTransformVolume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/DialogTransformVolume.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_DialogTransformVolume.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/DialogTransformVolume.cpp:16: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [854/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/FSVolume.cpp.o -MF freeview/CMakeFiles/freeview.dir/FSVolume.cpp.o.d -o freeview/CMakeFiles/freeview.dir/FSVolume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSVolume.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSVolume.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSVolume.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [855/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/FSSurface.cpp.o -MF freeview/CMakeFiles/freeview.dir/FSSurface.cpp.o.d -o freeview/CMakeFiles/freeview.dir/FSSurface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp: In member function ‘FSSurface::FindPath(int*, int, int*, int*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2067:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 2067 | check[closest_vno] = FALSE; /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2020:26: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ 2020 | check = (char*) calloc (mris->nvertices, sizeof(char)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: 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-I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/Interactor2DVoxelEdit.cpp.o -MF freeview/CMakeFiles/freeview.dir/Interactor2DVoxelEdit.cpp.o.d -o freeview/CMakeFiles/freeview.dir/Interactor2DVoxelEdit.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Interactor2DVoxelEdit.cpp [864/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/freeview_autogen/mocs_compilation.cpp.o -MF freeview/CMakeFiles/freeview.dir/freeview_autogen/mocs_compilation.cpp.o.d -o freeview/CMakeFiles/freeview.dir/freeview_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp In file included from /usr/include/qt6/QtCore/qvariant.h:13, from /usr/include/qt6/QtGui/qaction.h:13, from /usr/include/qt6/QtWidgets/qwidget.h:13, from /usr/include/qt6/QtWidgets/qframe.h:9, from /usr/include/qt6/QtWidgets/qabstractscrollarea.h:9, from /usr/include/qt6/QtWidgets/qscrollarea.h:9, from /usr/include/qt6/QtWidgets/qgraphicsview.h:11, from /usr/include/qt6/QtWidgets/QGraphicsView:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/BinaryTreeView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_BinaryTreeView.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:3: /usr/include/qt6/QtCore/qdebug.h:49:31: warning: defining ‘QDebug’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 49 | class QT6_ONLY(Q_CORE_EXPORT) QDebug : public QIODeviceBase | ^~~~~~ In file included from /usr/include/qt6/QtCore/qforeach.h:12, from /usr/include/qt6/QtCore/qglobal.h:56, from /usr/include/qt6/QtCore/qnamespace.h:13, from /usr/include/qt6/QtCore/qobjectdefs.h:13, from /usr/include/qt6/QtCore/qobject.h:11, from /usr/include/qt6/QtCore/QObject:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/Annotation2D.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_Annotation2D.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:2: /usr/include/qt6/QtCore/qttypetraits.h:297:89: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 297 | struct has_ostream_operator() << detail::const_reference())>> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/FSLabel.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_FSLabel.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:54: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_Layer.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:71: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/Layer.h:36:7: warning: defining ‘Layer’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 36 | class Layer : public QObject | ^~~~~ In file included from /usr/include/qt6/QtCore/qobject.h:19: /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/LayerDTI.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_LayerDTI.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:74: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/LayerVolumeBase.h:36:7: warning: defining ‘LayerVolumeBase’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 36 | class LayerVolumeBase : public LayerEditable | ^~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/LayerMRI.h:69:7: warning: defining ‘LayerMRI’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 69 | class LayerMRI : public LayerVolumeBase | ^~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_LayerPointSet.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:84: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/LayerPointSet.h:38:7: warning: defining ‘LayerPointSet’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 38 | class LayerPointSet : public LayerEditable | ^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_LayerSurface.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:97: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/LayerSurface.h:60:7: warning: defining ‘LayerSurface’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 60 | class LayerSurface : public LayerEditable | ^~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/PanelConnectomeMatrix.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_PanelConnectomeMatrix.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:105: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/PanelLayer.h:34:7: warning: defining ‘PanelLayer’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 34 | class PanelLayer : public QScrollArea, public UIUpdateHelper | ^~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_SurfaceAnnotation.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:123: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/SurfaceAnnotation.h:74:7: warning: defining ‘SurfaceAnnotation’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 74 | class SurfaceAnnotation : public QObject | ^~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_SurfaceLabel.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:124: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/SurfaceLabel.h:40:7: warning: defining ‘SurfaceLabel’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 40 | class SurfaceLabel : public QObject | ^~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_SurfaceOverlay.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:125: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/SurfaceOverlay.h:39:7: warning: defining ‘SurfaceOverlay’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 39 | class SurfaceOverlay : public QObject | ^~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_SurfacePath.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:127: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/SurfacePath.h:20:7: warning: defining ‘SurfacePath’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 20 | class SurfacePath : public QObject | ^~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_SurfaceRegion.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:129: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/SurfaceRegion.h:41:7: warning: defining ‘SurfaceRegion’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 41 | class SurfaceRegion : public QObject | ^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_SurfaceSpline.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:131: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/SurfaceSpline.h:19:7: warning: defining ‘SurfaceSpline’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 19 | class SurfaceSpline : public QObject | ^~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_VolumeFilter.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:142: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/VolumeFilter.h:35:7: warning: defining ‘VolumeFilter’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 35 | class VolumeFilter : public QObject | ^~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/../../../../freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/EWIEGA46WW/moc_qtcolorpicker.cpp:9, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/mocs_compilation.cpp:154: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ In file included from /usr/include/qt6/QtWidgets/QtWidgets:6: /usr/include/qt6/QtWidgets/qabstractbutton.h:23:24: warning: defining ‘QAbstractButton’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 23 | class Q_WIDGETS_EXPORT QAbstractButton : public QWidget | ^~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ In file included from /usr/include/qt6/QtWidgets/QtWidgets:168: /usr/include/qt6/QtWidgets/qlistwidget.h:23:24: warning: defining ‘QListWidgetItem’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 23 | class Q_WIDGETS_EXPORT QListWidgetItem | ^~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qmetatype.h:344:64: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 344 | static auto check(U *) -> std::integral_constant; | ^~~~~~~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [865/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double 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freeview/CMakeFiles/freeview.dir/SplineTreeWidget.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SplineTreeWidget.cpp [891/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/LayerMRI.cpp.o -MF freeview/CMakeFiles/freeview.dir/LayerMRI.cpp.o.d -o freeview/CMakeFiles/freeview.dir/LayerMRI.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp: In member function ‘bool LayerMRI::LoadSurfaceRegions(const QString&)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp:3385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3385 | fscanf( fp, "VOLUME_PATH %s\nVOLUME_THRESHOLD %f %f\nSURFACE_REGIONS %d", ch, &dTh_low, &dTh_high, &nNum ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp: In member function ‘bool LayerMRI::Load3DRegions(const QString&)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.cpp:4623:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4623 | fscanf( fp, "VOLUME_PATH %s\nVOLUME_THRESHOLD %f %f\nNUM_OF_REGIONS %d", ch, &dTh_low, &dTh_high, &nNum ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [892/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/LUTDataHolder.cpp.o -MF freeview/CMakeFiles/freeview.dir/LUTDataHolder.cpp.o.d -o freeview/CMakeFiles/freeview.dir/LUTDataHolder.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp: In constructor ‘LUTDataHolder::LUTDataHolder()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp:60:17: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 60 | file_in.open(QIODevice::ReadOnly | QIODevice::Text); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qfileinfo.h:9, from /usr/include/qt6/QtCore/QFileInfo:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp:22: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LUTDataHolder.cpp:66:18: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 66 | file_out.open(QIODevice::WriteOnly | QIODevice::Text); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [893/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/main.cpp.o -MF freeview/CMakeFiles/freeview.dir/main.cpp.o.d -o freeview/CMakeFiles/freeview.dir/main.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/main.cpp [894/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 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/usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [903/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/Region2DRectangle.cpp.o -MF freeview/CMakeFiles/freeview.dir/Region2DRectangle.cpp.o.d -o freeview/CMakeFiles/freeview.dir/Region2DRectangle.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region2DRectangle.cpp [904/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/qtcolorpicker.cpp.o -MF freeview/CMakeFiles/freeview.dir/qtcolorpicker.cpp.o.d -o freeview/CMakeFiles/freeview.dir/qtcolorpicker.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.cpp:48: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [905/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/PanelPointSet.cpp.o -MF freeview/CMakeFiles/freeview.dir/PanelPointSet.cpp.o.d -o freeview/CMakeFiles/freeview.dir/PanelPointSet.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelPointSet.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_PanelPointSet.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelPointSet.cpp:20: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [906/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/RenderView.cpp.o -MF freeview/CMakeFiles/freeview.dir/RenderView.cpp.o.d -o freeview/CMakeFiles/freeview.dir/RenderView.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/RenderView.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/RenderView.cpp: In member function ‘virtual void RenderView::enterEvent(QEvent*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/RenderView.cpp:273:36: warning: invalid conversion from ‘QEvent*’ to ‘QEnterEvent*’ [-fpermissive] 273 | GenericRenderView::enterEvent( event ); | ^~~~~ | | | QEvent* In file included from /usr/include/qt6/QtWidgets/QWidget:1, from /usr/include/qt6/QtOpenGLWidgets/qopenglwidget.h:9, from /usr/include/qt6/QtOpenGLWidgets/QOpenGLWidget:1, from /usr/include/vtk/QVTKOpenGLNativeWidget.h:94, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/GenericRenderView.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/RenderView.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/RenderView.cpp:19: /usr/include/qt6/QtWidgets/qwidget.h:677:42: note: initializing argument 1 of ‘virtual void QWidget::enterEvent(QEnterEvent*)’ 677 | virtual void enterEvent(QEnterEvent *event); | ~~~~~~~~~~~~~^~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics 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/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelSurface.cpp:21: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/PanelVolume.cpp.o -MF freeview/CMakeFiles/freeview.dir/PanelVolume.cpp.o.d -o freeview/CMakeFiles/freeview.dir/PanelVolume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelVolume.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_PanelVolume.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelVolume.cpp:20: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/SurfaceRegion.cpp.o -MF freeview/CMakeFiles/freeview.dir/SurfaceRegion.cpp.o.d -o freeview/CMakeFiles/freeview.dir/SurfaceRegion.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp: In static member function ‘static bool SurfaceRegion::WriteHeader(FILE*, LayerMRI*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:301:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 301 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerVolumeBase.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:42: /usr/include/qt6/QtCore/qfile.h:266:32: note: declared here 266 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp: In member function ‘bool SurfaceRegion::WriteBody(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:349:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 349 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:266:32: note: declared here 266 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp: In member function ‘bool SurfaceRegion::Load(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:379:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 379 | fscanf( fp, "%d\nPOINTS %d", &nGroup, &nPts ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:383:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 383 | fscanf( fp, "%d", &nPts ); | ~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:398:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 398 | fscanf( fp, "%f %f %f", &x, &y, &z ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceRegion.cpp:417:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( fp, "%d %d %d %d", &nIds, nInts, nInts+1, nInts+2 ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [916/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/ThreadBuildContour.cpp.o -MF freeview/CMakeFiles/freeview.dir/ThreadBuildContour.cpp.o.d -o freeview/CMakeFiles/freeview.dir/ThreadBuildContour.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/ThreadBuildContour.cpp [917/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/SurfaceOverlayProperty.cpp.o -MF freeview/CMakeFiles/freeview.dir/SurfaceOverlayProperty.cpp.o.d -o freeview/CMakeFiles/freeview.dir/SurfaceOverlayProperty.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceOverlayProperty.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceOverlayProperty.cpp: In member function ‘bool SurfaceOverlayProperty::LoadCustomColorScale(const QString&)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceOverlayProperty.cpp:844:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 844 | file.open(QIODevice::ReadOnly); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfaceOverlayProperty.cpp:36: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [918/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao 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-DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/track_io/TrackIO.cpp.o -MF freeview/CMakeFiles/freeview.dir/track_io/TrackIO.cpp.o.d -o freeview/CMakeFiles/freeview.dir/track_io/TrackIO.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/track_io/TrackIO.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/track_io/TrackIO.cpp: In member function ‘bool CTrackReader::Open(const char*, TRACK_HEADER*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/track_io/TrackIO.cpp:179:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 179 | fread(dim, sizeof(int)*3, 1, m_pFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/track_io/TrackIO.cpp:196:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 196 | fread(m_header.voxel_size, sizeof(float)*3, 1, m_pFile); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [937/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/ToolWindowEdit.cpp.o -MF freeview/CMakeFiles/freeview.dir/ToolWindowEdit.cpp.o.d -o freeview/CMakeFiles/freeview.dir/ToolWindowEdit.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/ToolWindowEdit.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_ToolWindowEdit.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/ToolWindowEdit.cpp:16: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [938/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/VolumeFilterBoundary.cpp.o -MF freeview/CMakeFiles/freeview.dir/VolumeFilterBoundary.cpp.o.d -o freeview/CMakeFiles/freeview.dir/VolumeFilterBoundary.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/VolumeFilterBoundary.cpp [939/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf 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-Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/WindowConfigureOverlay.cpp.o -MF freeview/CMakeFiles/freeview.dir/WindowConfigureOverlay.cpp.o.d -o freeview/CMakeFiles/freeview.dir/WindowConfigureOverlay.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/WindowConfigureOverlay.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_WindowConfigureOverlay.h:30, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/WindowConfigureOverlay.cpp:16: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [953/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/MainApplication.cpp.o -MF freeview/CMakeFiles/freeview.dir/MainApplication.cpp.o.d -o freeview/CMakeFiles/freeview.dir/MainApplication.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainApplication.cpp [954/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/PanelTrack.cpp.o -MF freeview/CMakeFiles/freeview.dir/PanelTrack.cpp.o.d -o freeview/CMakeFiles/freeview.dir/PanelTrack.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelTrack.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_PanelTrack.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelTrack.cpp:16: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [955/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/ProgressCallback.cpp.o -MF freeview/CMakeFiles/freeview.dir/ProgressCallback.cpp.o.d -o freeview/CMakeFiles/freeview.dir/ProgressCallback.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/ProgressCallback.cpp [956/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive 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/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_PanelConnectomeMatrix.h:29, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelConnectomeMatrix.cpp:2: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. 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[994/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/BinaryTreeView.cpp.o -MF freeview/CMakeFiles/freeview.dir/BinaryTreeView.cpp.o.d -o freeview/CMakeFiles/freeview.dir/BinaryTreeView.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/BinaryTreeView.cpp In file included from /usr/include/qt6/QtCore/qdatastream.h:9, from /usr/include/qt6/QtCore/qmetatype.h:14, from /usr/include/qt6/QtWidgets/qgraphicsview.h:9, from /usr/include/qt6/QtWidgets/QGraphicsView:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/BinaryTreeView.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/BinaryTreeView.cpp:1: /usr/include/qt6/QtCore/qchar.h:48:31: warning: defining ‘QChar’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 48 | class QT6_ONLY(Q_CORE_EXPORT) QChar { | ^~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. 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-I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive 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-DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/LayerPropertyODF.cpp.o -MF freeview/CMakeFiles/freeview.dir/LayerPropertyODF.cpp.o.d -o freeview/CMakeFiles/freeview.dir/LayerPropertyODF.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerPropertyODF.cpp [1002/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/LayerODF.cpp.o -MF freeview/CMakeFiles/freeview.dir/LayerODF.cpp.o.d -o freeview/CMakeFiles/freeview.dir/LayerODF.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp: In constructor ‘LayerODF::LayerODF(LayerMRI*, QObject*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp:47:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 47 | file.open(QIODevice::ReadOnly); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerVolumeBase.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.h:4, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp:5: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerODF.cpp:56:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 56 | file.open(QIODevice::ReadOnly); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1003/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/MainWindow.cpp.o -MF freeview/CMakeFiles/freeview.dir/MainWindow.cpp.o.d -o freeview/CMakeFiles/freeview.dir/MainWindow.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp:22: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp: In member function ‘void MainWindow::OnGoToPoint()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp:8158:14: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 8158 | file.open(QIODevice::ReadOnly | QIODevice::Text); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/qdir.h:11, from /usr/include/qt6/QtCore/QtCore:92: /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp: In static member function ‘static void MainWindow::WriteLog(const QString&, const QString&, bool)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/MainWindow.cpp:9865:12: warning: ignoring return value of ‘virtual bool QFile::open(QIODeviceBase::OpenMode)’, declared with attribute ‘nodiscard’ [-Wunused-result] 9865 | file.open(bOverwrite?QFile::WriteOnly:QFile::Append); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:264:32: note: declared here 264 | QFILE_MAYBE_NODISCARD bool open(OpenMode flags) override; | ^~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1004/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/FlowLayout.cpp.o -MF freeview/CMakeFiles/freeview.dir/FlowLayout.cpp.o.d -o freeview/CMakeFiles/freeview.dir/FlowLayout.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FlowLayout.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FlowLayout.cpp:52: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1005/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/PanelODF.cpp.o -MF freeview/CMakeFiles/freeview.dir/PanelODF.cpp.o.d -o freeview/CMakeFiles/freeview.dir/PanelODF.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/PanelODF.cpp [1006/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/DialogTransformSurface.cpp.o -MF freeview/CMakeFiles/freeview.dir/DialogTransformSurface.cpp.o.d -o freeview/CMakeFiles/freeview.dir/DialogTransformSurface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/DialogTransformSurface.cpp [1007/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/WindowEditAnnotation.cpp.o -MF freeview/CMakeFiles/freeview.dir/WindowEditAnnotation.cpp.o.d -o freeview/CMakeFiles/freeview.dir/WindowEditAnnotation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/WindowEditAnnotation.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_WindowEditAnnotation.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/WindowEditAnnotation.cpp:2: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1008/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/DialogMovePoint.cpp.o -MF freeview/CMakeFiles/freeview.dir/DialogMovePoint.cpp.o.d -o freeview/CMakeFiles/freeview.dir/DialogMovePoint.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/DialogMovePoint.cpp [1009/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/Region3D.cpp.o -MF freeview/CMakeFiles/freeview.dir/Region3D.cpp.o.d -o freeview/CMakeFiles/freeview.dir/Region3D.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp: In static member function ‘static bool Region3D::WriteHeader(FILE*, LayerMRI*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:173:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 173 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt6/QtCore/QFile:1, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerVolumeBase.h:28, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerMRI.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:16: /usr/include/qt6/QtCore/qfile.h:266:32: note: declared here 266 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp: In member function ‘bool Region3D::WriteBody(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:192:12: warning: ignoring return value of ‘bool QFile::open(FILE*, QIODeviceBase::OpenMode, QFileDevice::FileHandleFlags)’, declared with attribute ‘nodiscard’ [-Wunused-result] 192 | file.open( fp, QIODevice::Append ); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt6/QtCore/qfile.h:266:32: note: declared here 266 | QFILE_MAYBE_NODISCARD bool open(FILE *f, OpenMode ioFlags, FileHandleFlags handleFlags=DontCloseHandle); | ^~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp: In member function ‘bool Region3D::Load(FILE*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:213:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 213 | fscanf( fp, "POINTS %d", &nPts ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/Region3D.cpp:217:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 217 | fscanf( fp, "%f %f %f", &x, &y, &z ); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ At top level: cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1010/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/histo_compute_joint_density.cpp.o -MF histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/histo_compute_joint_density.cpp.o.d -o histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/histo_compute_joint_density.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/histo_compute_joint_density/histo_compute_joint_density.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/histo_compute_joint_density/histo_compute_joint_density.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1022/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o -MF hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o.d -o hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp:137:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 137 | for (sno = 0; sno < SURFACES ; sno++) { | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_template/hiam_make_template.cpp:247:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 247 | for (sno = 0; sno < SURFACES ; sno++) { | ^ [1023/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o -MF hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o.d -o hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_surfaces/hiam_make_surfaces.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_make_surfaces/hiam_make_surfaces.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1024/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o -MF hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o.d -o hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp: In function ‘int mrisRegister(MRI_SURFACE*, MRI_SP*, INTEGRATION_PARMS*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp:504:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 504 | for (sno = 0 ; sno < SURFACES ; sno++) { | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/hiam_register/hiam_register.cpp:558:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 558 | for (i = 0 ; i < NSIGMAS ; i++) /* for each spatial scale (blurring) */ | ^ [1025/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/vtkutils -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/ITK-5.4 -isystem /usr/include/gdcm -isystem /usr/include/libminc -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DDISABLE_LINEPROF -DNDEBUG -std=c++17 -Wno-deprecated -Wno-reorder -Wno-uninitialized -Wno-unused-variable -Wno-sign-compare -Wno-overloaded-virtual -Wno-inconsistent-missing-override -Wno-deprecated-declarations -nostartfiles -fopenmp -MD -MT freeview/CMakeFiles/freeview.dir/ToolWindowLesionPopup.cpp.o -MF freeview/CMakeFiles/freeview.dir/ToolWindowLesionPopup.cpp.o.d -o freeview/CMakeFiles/freeview.dir/ToolWindowLesionPopup.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/ToolWindowLesionPopup.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/qtcolorpicker.h:51, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/freeview/freeview_autogen/include/ui_ToolWindowLesionPopup.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/ToolWindowLesionPopup.cpp:2: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ cc1plus: note: unrecognized command-line option ‘-Wno-inconsistent-missing-override’ may have been intended to silence earlier diagnostics [1026/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o -MF label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o.d -o label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/label2flat/label2flat.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/label2flat/label2flat.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1027/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o -MF histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o.d -o histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/histo_register_block/histo_register_block.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/histo_register_block/histo_register_block.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1028/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o -MF label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o.d -o label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/label2patch/label2patch.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/label2patch/label2patch.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1029/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o -MF histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o.d -o histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/histo_synthesize/histo_synthesize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/histo_synthesize/histo_synthesize.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1030/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o -MF mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o.d -o mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mkxsubjreg/mkxsubjreg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mkxsubjreg/mkxsubjreg.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1031/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o -MF mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o.d -o mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_apply_bias.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_apply_bias.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1032/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o -MF mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o.d -o mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_compute_bias.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_bias/mri_compute_bias.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1033/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o -MF mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o.d -o mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_tissue_parms/mri_ca_tissue_parms.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_tissue_parms/mri_ca_tissue_parms.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1034/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o -MF mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o.d -o mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_average/mri_average.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_average/mri_average.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1035/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o -MF mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o.d -o mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compile_edits/mri_compile_edits.cpp [1036/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_cal_renormalize_gca -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o -MF mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o.d -o mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cal_renormalize_gca/mri_cal_renormalize_gca.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cal_renormalize_gca/mri_cal_renormalize_gca.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1037/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o -MF mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o.d -o mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cnr/mri_cnr.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cnr/mri_cnr.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1038/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o -MF mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o.d -o mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_change_map/mri_compute_change_map.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_change_map/mri_compute_change_map.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1039/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o -MF mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o.d -o mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp:40: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp: In function ‘int replaceLabels(MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp:1474:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1474 | for (i = 0 ; i < sizeof(output_labels)/sizeof(output_labels[0]) ; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ca_train/mri_ca_train.cpp:143:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 143 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1040/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_fractions.cpp:95:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 95 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1041/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_intensities.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_volume_intensities.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1042/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o -MF mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o.d -o mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_copy_values/mri_copy_values.cpp [1043/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_layer_fractions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mri_compute_layer_fractions.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1044/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o -MF mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o.d -o mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mris_compute_layer_intensities.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_compute_volume_fractions/mris_compute_layer_intensities.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1045/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o -MF mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o.d -o mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ctab_fix/mri_ctab_fix.cpp [1046/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_concatenate_gcam -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o -MF mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o.d -o mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concatenate_gcam/mri_concatenate_gcam.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_concatenate_gcam/mri_concatenate_gcam.cpp:11: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1047/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o -MF mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o.d -o mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cor2label/mri_cor2label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_cor2label/mri_cor2label.cpp:104: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1048/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o -MF mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o.d -o mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp:16: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_correct_segmentations/mri_correct_segmentations.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [1049/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o -MF mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o.d -o mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_evaluate_morph/mri_evaluate_morph.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_evaluate_morph/mri_evaluate_morph.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1050/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o -MF mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o.d -o mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract/mri_extract.cpp [1051/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o -MF mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o.d -o mri_dct_align/CMakeFiles/mri_dct_align.dir/mri_dct_align.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp:44: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align.cpp:51: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [1052/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o -MF mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o.d -o mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:40: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:318:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 318 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp: In function ‘double compute_global_dct_optimum(DCT*, MRI*, MRI*, VOXEL_LIST*, VOXEL_LIST*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dct_align/mri_dct_align_binary.cpp:1026:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 1026 | for (i = 0 ; i < NSCALES ; i++) | ^ [1053/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o -MF mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o.d -o mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_distance_transform/mri_distance_transform.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [1054/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o -MF mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o.d -o mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dist_surf_label/mri_dist_surf_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_dist_surf_label/mri_dist_surf_label.cpp:15: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1055/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o -MF mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o.d -o mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fslmat_to_lta/mri_fslmat_to_lta.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fslmat_to_lta/mri_fslmat_to_lta.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fslmat_to_lta/mri_fslmat_to_lta.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1056/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o -MF mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o.d -o mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract_label/mri_extract_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract_label/mri_extract_label.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1057/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o -MF mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o.d -o mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract_fcd_features/mri_extract_fcd_features.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_extract_fcd_features/mri_extract_fcd_features.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1058/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o -MF mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o.d -o mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp:49: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fdr/mri_fdr.cpp:131:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1059/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o -MF mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o.d -o mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp:57: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp:58: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp:66: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fieldsign/mri_fieldsign.cpp:128:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 128 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1060/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o -MF mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o.d -o mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fuse_intensity_images/mri_fuse_intensity_images.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fuse_intensity_images/mri_fuse_intensity_images.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1061/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o -MF mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o.d -o mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp:62:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 62 | typedef struct { | ^ | MRI_BIAS_FIELD /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp:85:10: note: type is not C-compatible because ‘MRI_BIAS_FIELD::thresh’ has default member initializer 85 | double thresh = 0; | ^~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_fit_bias/mri_fit_bias.cpp:146:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 146 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1062/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o -MF mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o.d -o mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gca_ambiguous/mri_gca_ambiguous.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gca_ambiguous/mri_gca_ambiguous.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1063/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o -MF mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o.d -o mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriBSpline.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp:15: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp:56:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 56 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gradunwarp/mri_gradunwarp.cpp:13: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1064/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o -MF mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o.d -o mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_head/mri_head.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_head/mri_head.cpp: In function ‘void dummy_read()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_head/mri_head.cpp:167:10: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 167 | freopen("/dev/null", "w", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [1065/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o -MF mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o.d -o mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hausdorff_dist/mri_hausdorff_dist.cpp:131:21: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 131 | fscanf(fp,"%s",in_fname); | ~~~~~~^~~~~~~~~~~~~~~~~~ [1066/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o -MF mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o.d -o mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:63: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:66: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:68: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:174:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | for(int n=0; n < yflist.size(); n++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:502:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 502 | for(int cno=0; cno < csizelist.size(); cno++){ | ~~~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:141:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 141 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:307:22: warning: ‘/gamma.nii.gz’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 307 | sprintf(fname,"%s/gamma.nii.gz",condir); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:307:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:321:22: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 321 | sprintf(fname,"%s/sig.nii.gz",condir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:321:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:341:22: warning: ‘/ocn.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 341 | sprintf(fname,"%s/ocn.nii.gz",condir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:341:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:343:22: warning: ‘/ctab.ocn’ directive writing 9 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 343 | sprintf(fname,"%s/ctab.ocn",condir); | ^~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:343:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 10 and 1009 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:345:22: warning: ‘/clusters.dat’ directive writing 13 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 345 | sprintf(fname,"%s/clusters.dat",condir); | ^~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:345:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 14 and 1013 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:347:22: warning: ‘/clusters.json’ directive writing 14 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 347 | sprintf(fname,"%s/clusters.json",condir); | ^~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:347:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 1014 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:350:22: warning: ‘/max.cluster.dat’ directive writing 16 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 350 | sprintf(fname,"%s/max.cluster.dat",condir); | ^~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:350:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 17 and 1016 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:490:24: warning: ‘/sig.nii.gz’ directive writing 11 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 490 | sprintf(fname,"%s/sig.nii.gz",condir); | ^~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:490:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 12 and 1011 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:498:24: warning: ‘/cluster.pval.dat’ directive writing 17 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 498 | sprintf(fname,"%s/cluster.pval.dat",condir); | ^~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:498:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 18 and 1017 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:518:24: warning: ‘/ocn.thresh.nii.gz’ directive writing 18 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 518 | sprintf(fname,"%s/ocn.thresh.nii.gz",condir); | ^~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:518:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 19 and 1018 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:520:24: warning: ‘/cluster.pval.min.dat’ directive writing 21 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 520 | sprintf(fname,"%s/cluster.pval.min.dat",condir); | ^~~~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:520:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 22 and 1021 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:524:24: warning: ‘/clusters.perm.dat’ directive writing 18 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 524 | sprintf(fname,"%s/clusters.perm.dat",condir); | ^~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:524:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 19 and 1018 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:527:24: warning: ‘/clusters.perm.json’ directive writing 19 bytes into a region of size between 1 and 1000 [-Wformat-overflow=] 527 | sprintf(fname,"%s/clusters.perm.json",condir); | ^~~~~~~~~~~~~~~~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_mvglmfit.cpp:527:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 1019 bytes into a destination of size 1000 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [1067/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o -MF mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o.d -o mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp:49: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:34:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 34 | { | ^ | GTMSEG /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:53:9: note: type is not C-compatible because ‘GTMSEG::mergesegfile’ has default member initializer 53 | char *mergesegfile=NULL; | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmseg/mri_gtmseg.cpp:89:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 89 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1068/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o -MF mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o.d -o mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:60: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:62: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:71: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:74: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:34:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 34 | { | ^ | GTMSEG /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gtm.h:53:9: note: type is not C-compatible because ‘GTMSEG::mergesegfile’ has default member initializer 53 | char *mergesegfile=NULL; | ^~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:98:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 98 | { | ^ | GTMOPT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:110:11: note: type is not C-compatible because ‘GTMOPT::betaIdeal’ has default member initializer 110 | MATRIX *betaIdeal=NULL; | ^~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_gtmpvc/mri_gtmpvc.cpp:209:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1069/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o -MF mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o.d -o mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 229 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:238:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 238 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:595:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 595 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_hires_register.cpp:601:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 601 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) { | ^ [1070/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o -MF mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o.d -o mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:530: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:531: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:541: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:800:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 800 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:3011:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3011 | fscanf(fp,"%d",&mriglm->ffxdof); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_glmfit/mri_glmfit.cpp:3133:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3133 | fscanf(fptmp,"%lf",&MRTM2_k2p); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ [1071/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o -MF mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o.d -o mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:40: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:364:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 364 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:470:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 470 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align_binary.cpp:477:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 477 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) | ^ [1072/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o -MF mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o.d -o mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_compute_distances.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_compute_distances.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1073/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o -MF mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o.d -o mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:45: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:245:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 245 | for (i = 0 ; i < NUM_NON_ARTERY_LABELS ; i++) { | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align_binary.cpp:249:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 249 | for (i = 0 ; i < NUM_NON_HIPPO_LABELS ; i++) { | ^ [1074/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o -MF mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o.d -o mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_histo_eq/mri_histo_eq.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_histo_eq/mri_histo_eq.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1075/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o -MF mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o.d -o mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_joint_density/mri_joint_density.cpp [1076/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o -MF mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o.d -o mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_linear_align.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [1077/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o -MF mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o.d -o mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_hires_register/mri_nl_align.cpp:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [1078/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o -MF mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o.d -o mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_jacobian/mri_jacobian.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_jacobian/mri_jacobian.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1079/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o -MF mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o.d -o mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label_histo/mri_label_histo.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label_histo/mri_label_histo.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1080/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o -MF mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o.d -o mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_map_cpdat/mri_map_cpdat.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_map_cpdat/mri_map_cpdat.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1081/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o -MF mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o.d -o mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label_vals/mri_label_vals.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label_vals/mri_label_vals.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1082/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o -MF mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o.d -o mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label_volume/mri_label_volume.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_label_volume/mri_label_volume.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1083/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o -MF mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o.d -o mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_linear_register/mri_linear_register.cpp:155:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | fscanf(fp, "nsubjects=%d", &nsubjects) ; | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1084/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o -MF mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o.d -o mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mark_temporal_lobe/mri_mark_temporal_lobe.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mark_temporal_lobe/mri_mark_temporal_lobe.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1085/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o -MF mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o.d -o mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:83: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:84: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:94: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:180:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 180 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1086/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o -MF mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o.d -o mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_modify.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_modify.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_modify.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1087/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o -MF mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o.d -o mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_copy_params.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_modify/mri_copy_params.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1088/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o -MF mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o.d -o mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:99:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 99 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1089/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o -MF mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o.d -o mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mi/mri_mi.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mi/mri_mi.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1090/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o -MF mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o.d -o mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_nlfilter/mri_nlfilter.cpp [1091/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o -MF mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o.d -o mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_morphology/mri_morphology.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_morphology/mri_morphology.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1092/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o -MF mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o.d -o mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_parse_sdcmdir/mri_parse_sdcmdir.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_parse_sdcmdir/mri_parse_sdcmdir.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_parse_sdcmdir/mri_parse_sdcmdir.cpp:107:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 107 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1093/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o -MF mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o.d -o mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_polv/mri_polv.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrinorm.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_polv/mri_polv.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1094/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o -MF mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o.d -o mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_otl/list_otl_labels.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_otl/list_otl_labels.cpp:9: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_otl/list_otl_labels.cpp:10: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ [1095/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o -MF mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o.d -o mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_paint/mri_paint.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_paint/mri_paint.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1096/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o -MF mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o.d -o mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_reduce/mri_reduce.cpp [1097/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_ms_fitparms -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o -MF mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o.d -o mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ms_fitparms/mri_ms_fitparms.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ms_fitparms/mri_ms_fitparms.cpp:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1098/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o -MF mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o.d -o mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp:41: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp: In function ‘int guess_file_type(char*, int*, int*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_path2label/mri_path2label.cpp:407:13: warning: ignoring return value of ‘ssize_t getline(char**, size_t*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 407 | getline (&line, &size, fp); | ~~~~~~~~^~~~~~~~~~~~~~~~~~ [1099/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o -MF mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o.d -o mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_probe_ima/mri_probe_ima.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_probe_ima/mri_probe_ima.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1100/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_rf_label -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o -MF mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o.d -o mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp: In function ‘int postprocess_segmentation_with_aseg(MRI*, MRI*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_label/mri_rf_label.cpp:867:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 867 | for (l = 0 ; l < NCLOSE_LABELS ; l++) | ^ [1101/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o -MF mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o.d -o mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ribbon/mri_ribbon.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_ribbon/mri_ribbon.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1102/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o -MF mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o.d -o mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp: In function ‘int replaceLabels(MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp:809:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 809 | for (i = 0 ; i < sizeof(output_labels)/sizeof(output_labels[0]) ; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp: In function ‘RANDOM_FOREST* train_rforest(MRI* (*)[20], MRI* (*)[20], TRANSFORM* (*)[20], int, GCA*, RFA_PARMS*, float, int, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_long_train/mri_rf_long_train.cpp:1585:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1585 | write(fd, line, (strlen(line))*sizeof(char)) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1103/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o -MF mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o.d -o mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rigid_register/mri_rigid_register.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rigid_register/mri_rigid_register.cpp:83: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1104/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o -MF mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o.d -o mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp: In function ‘int replaceLabels(MRI*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:908:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 908 | for (i = 0 ; i < sizeof(output_labels)/sizeof(output_labels[0]) ; i++) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp: In function ‘RANDOM_FOREST* train_rforest_with_wmsa_nbrs(MRI**, MRI**, TRANSFORM**, int, GCA*, RFA_PARMS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:1859:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1859 | write(fd, line, (strlen(line))*sizeof(char)) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp: In function ‘RANDOM_FOREST* train_rforest(MRI**, MRI**, TRANSFORM**, int, GCA*, RFA_PARMS*, float, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_rf_train/mri_rf_train.cpp:1646:12: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1646 | write(fd, line, (strlen(line))*sizeof(char)) ; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1105/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o -MF mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o.d -o mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp: In function ‘int fix_genesis(char*, char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:121:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 121 | if (fread(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:155:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 155 | if (fwrite(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp: In function ‘int fix_siemens(char*, char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 190 | if (fread(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_subject_info/mri_strip_subject_info.cpp:252:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 252 | if (fwrite(buf, 1, file_length, fp) != file_length) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ [1106/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o -MF mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o.d -o mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp:59: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_sbbr/mri_sbbr.cpp:179:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 179 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1107/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o -MF mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o.d -o mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seghead/mri_seghead.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_seghead/mri_seghead.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1108/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_segcentroids -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o -MF mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o.d -o mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segcentroids/mri_segcentroids.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_segcentroids/mri_segcentroids.cpp:10: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1109/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o -MF mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o.d -o mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_nonwhite/mri_strip_nonwhite.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_strip_nonwhite/mri_strip_nonwhite.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1110/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o -MF mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o.d -o mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_threshold/mri_threshold.cpp [1111/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o -MF mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o.d -o mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp: In function ‘int transform_T1_values_using_joint_pdf(MRI*, char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_synthesize/mri_synthesize.cpp:675:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 675 | fscanf(fp, " ;\n") ; | ~~~~~~^~~~~~~~~~~~ [1112/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o -MF mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o.d -o mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfacemask/mri_surfacemask.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_surfacemask/mri_surfacemask.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1113/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o -MF mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o.d -o mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_topologycorrection/mri_topologycorrection.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_topologycorrection/mri_topologycorrection.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_topologycorrection/mri_topologycorrection.cpp:50: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [1114/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o -MF mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o.d -o mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_train/mri_train.cpp:174:56: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (write(fd, line, (strlen(line))*sizeof(char)) < (strlen(line))*sizeof(char)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1115/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o -MF mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o.d -o mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_transform/mri_transform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_transform/mri_transform.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1116/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o -MF mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o.d -o mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_twoclass/mri_twoclass.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_twoclass/mri_twoclass.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1117/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o -MF mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o.d -o mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp:51: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp:56: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_cluster.cpp:314:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 314 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1118/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o -MF mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o.d -o mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_xvolavg/mri_xvolavg.cpp [1119/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o -MF mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o.d -o mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volsynth/mri_volsynth.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volsynth/mri_volsynth.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volsynth/mri_volsynth.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ [1120/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o -MF mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o.d -o mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/registerio.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp:46: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp:211:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 211 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp: In function ‘int parse_commandline(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_volcluster/mri_volcluster.cpp:1085:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1085 | fscanf(fp,"%lf",&fwhm); | ~~~~~~^~~~~~~~~~~~~~~~ [1121/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/glut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o -MF mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o.d -o mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/texfont.cpp [1122/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mri_warp_convert -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o -MF mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o.d -o mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_warp_convert/mri_warp_convert.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gca.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcamorph.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_warp_convert/mri_warp_convert.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1123/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o -MF mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o.d -o mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp:47: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_z2p/mri_z2p.cpp:94:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 94 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1124/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o -MF mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o.d -o mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp:48: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_wbc/mri_wbc.cpp:153:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1125/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o -MF mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o.d -o mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_annot_to_segmentation/mris_annot_to_segmentation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_annot_to_segmentation/mris_annot_to_segmentation.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1126/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/glut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris2rgb/CMakeFiles/mris2rgb.dir/oglutil.cpp.o -MF mris2rgb/CMakeFiles/mris2rgb.dir/oglutil.cpp.o.d -o mris2rgb/CMakeFiles/mris2rgb.dir/oglutil.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/oglutil.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/oglutil.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1127/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/glut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o -MF mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o.d -o mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:46: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘void grabPixelsTIFF(unsigned int, unsigned int, unsigned char*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:1135:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1135 | for (i=0;i: In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:259:14: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 7 or more bytes (assuming 106) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:484:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 484 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "lateral", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:484:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 15 or more bytes (assuming 114) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:479:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 479 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "lateral", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:479:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 14 or more bytes (assuming 113) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:518:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 518 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "ventral", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:518:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 15 or more bytes (assuming 114) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:513:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 513 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "ventral", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:513:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 14 or more bytes (assuming 113) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:552:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 92 [-Wformat-overflow=] 552 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "dorsal", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:552:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 14 or more bytes (assuming 113) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:547:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 92 [-Wformat-overflow=] 547 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "dorsal", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:547:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 13 or more bytes (assuming 112) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:586:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 92 [-Wformat-overflow=] 586 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "medial", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:586:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 14 or more bytes (assuming 113) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:581:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 92 [-Wformat-overflow=] 581 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "medial", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:581:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 13 or more bytes (assuming 112) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:616:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 89 [-Wformat-overflow=] 616 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "posterior", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:616:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 17 or more bytes (assuming 116) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:611:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 89 [-Wformat-overflow=] 611 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "posterior", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:611:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 16 or more bytes (assuming 115) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:646:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 646 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "frontal", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:646:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 15 or more bytes (assuming 114) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:641:37: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 641 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "frontal", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:641:18: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 14 or more bytes (assuming 113) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:455:35: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 455 | sprintf(out_fname, "%s/%s.%s.tiff", out_prefix, "lateral", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:455:16: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 15 or more bytes (assuming 114) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:450:35: warning: ‘%s’ directive writing up to 99 bytes into a region of size 91 [-Wformat-overflow=] 450 | sprintf(out_fname, "%s/%s.%s.rgb", out_prefix, "lateral", name) ; | ^~ ~~~~ In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris2rgb/mris2rgb.cpp:450:16: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 14 or more bytes (assuming 113) into a destination of size 100 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [1128/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_apply_reg -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o -MF mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o.d -o mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp:56: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp:60: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_apply_reg/mris_apply_reg.cpp:124:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1129/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o -MF mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o.d -o mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_average_curvature/mris_average_curvature.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_average_curvature/mris_average_curvature.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1130/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o -MF mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o.d -o mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_BA_segment/mris_BA_segment.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_BA_segment/mris_BA_segment.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1131/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o -MF mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o.d -o mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_train/mris_ca_train.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_train/mris_ca_train.cpp:44: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ca_train/mris_ca_train.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ [1132/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o -MF mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o.d -o mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_overlap/mris_compute_overlap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_overlap/mris_compute_overlap.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1133/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o -MF mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o.d -o mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_volume_fractions/mris_compute_volume_fractions.cpp:69:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1134/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o -MF mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o.d -o mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_acorr/mris_compute_acorr.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_acorr/mris_compute_acorr.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1135/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o -MF mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o.d -o mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:49: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp: In function ‘void calcMeanMinLabelDistances()’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:930:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 930 | surf1BoundaryLabels[cti].annotation != 0xFFFFFFFF) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:1032:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1032 | surf2BoundaryLabels[cti].annotation != 0xFFFFFFFF) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:1127:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1127 | surf1BoundaryLabels[cti].annotation != 0xFFFFFFFF) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp: In function ‘void padWhite(char*, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_compute_parc_overlap/mris_compute_parc_overlap.cpp:1496:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1496 | while (strlen(str) < maxLen) | ~~~~~~~~~~~~^~~~~~~~ [1136/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o -MF mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o.d -o mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_copy_header/mris_copy_header.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_copy_header/mris_copy_header.cpp:10: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_copy_header/mris_copy_header.cpp:9: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1137/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o -MF mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o.d -o mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_congeal/mris_congeal.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_congeal/mris_congeal.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_congeal/mris_congeal.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:71:1: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 71 | { | ^ | GCSA_INPUT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/gcsa.h:77:10: note: type is not C-compatible because ‘GCSA_INPUT::m_debug’ has default member initializer 77 | int m_debug=0; | ^~~~~~~ [1138/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o -MF mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o.d -o mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_nudge.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_nudge.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1139/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o -MF mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o.d -o mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_ca_deform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_ca_deform.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1140/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o -MF mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o.d -o mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_map/mris_distance_map.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_map/mris_distance_map.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_map/mris_distance_map.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [1141/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o -MF mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o.d -o mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_to_label/mris_distance_to_label.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ [1142/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o -MF mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o.d -o mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_entropy/mris_entropy.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_entropy/mris_entropy.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1143/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o -MF mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o.d -o mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_transform/mris_distance_transform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_distance_transform/mris_distance_transform.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1144/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o -MF mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o.d -o mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_errors/mris_errors.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_errors/mris_errors.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1145/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o -MF mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o.d -o mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_deform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_deform.cpp:38: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri.h:36, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_deform/mris_deform.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h: In function ‘void AffineMatrixAlloc(AffineMatrix**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/affine.h:136:17: warning: ignoring return value of ‘int posix_memalign(void**, size_t, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 136 | posix_memalign(&tmp, 16, sizeof(AffineMatrix)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [1146/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o -MF mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o.d -o mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_extract_patches/mris_extract_patches.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_extract_patches/mris_extract_patches.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1147/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o -MF mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o.d -o mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fill/mris_fill.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fill/mris_fill.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1148/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o -MF mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o.d -o mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_expand/mris_expand.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_expand/mris_expand.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1149/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_find_flat_regions -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o -MF mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o.d -o mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1150/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o -MF mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o.d -o mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:126, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/cma.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fastmarching.h:84:26: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 84 | class HeapCompare : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp: In function ‘int get_option(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_flatten/mris_flatten.cpp:777:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 777 | for(n=0; n < segidlist.size(); n++) printf("%d ",segidlist[n]); | ~~^~~~~~~~~~~~~~~~~~ [1151/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o -MF mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o.d -o mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_hausdorff_dist/mris_hausdorff_dist.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_hausdorff_dist/mris_hausdorff_dist.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1152/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o -MF mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o.d -o mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp:120: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp:121: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp:125: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_fwhm/mris_fwhm.cpp:224:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 224 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1153/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o -MF mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o.d -o mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_interpolate_warp/mris_interpolate_warp.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_interpolate_warp/mris_interpolate_warp.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1154/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o -MF mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o.d -o mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label_area/mris_label_area.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label_area/mris_label_area.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1155/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o -MF mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o.d -o mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_init_global_tractography/mris_init_global_tractography.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_init_global_tractography/mris_init_global_tractography.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1156/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o -MF mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o.d -o mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label_calc/mris_label_calc.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label_calc/mris_label_calc.cpp:33: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1157/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o -MF mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o.d -o mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label_mode/mris_label_mode.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_label_mode/mris_label_mode.cpp:29: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1158/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o -MF mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o.d -o mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_average_surface/mris_make_average_surface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_average_surface/mris_make_average_surface.cpp:102: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_average_surface/mris_make_average_surface.cpp:103: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [1159/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o -MF mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o.d -o mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_template/mris_make_template.cpp:408:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 408 | for (sno = 0; sno < SURFACES ; sno++) | ^ [1160/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o -MF mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o.d -o mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_map_cuts/mris_map_cuts.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_map_cuts/mris_map_cuts.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1161/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o -MF mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o.d -o mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_face_parcellation/mris_make_face_parcellation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_make_face_parcellation/mris_make_face_parcellation.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1162/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o -MF mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o.d -o mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_morph_stats/mris_morph_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_morph_stats/mris_morph_stats.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1163/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o -MF mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o.d -o mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_merge_parcellations/mris_merge_parcellations.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_merge_parcellations/mris_merge_parcellations.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1164/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/abs2rel.cpp [1165/1580] /usr/bin/g++ -DDIY_HAS_MPI=0 -DDIY_NO_THREADS -DFMT_SHARED -DGLAD_API_CALL_EXPORT -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGLWIDGETS_LIB -DQT_OPENGL_LIB -DQT_QMLINTEGRATION_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_SQL_LIB -DQT_WIDGETS_LIB -DSCN_DISABLE_FAST_FLOAT=0 -DSCN_DISABLE_REGEX=0 -DSCN_REGEX_BACKEND=0 -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -DVTK_HAS_OGGTHEORA_SUPPORT -Dkiss_fft_scalar=double -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -I/usr/include/vtk/vtkscn/include -I/usr/include/vtk/vtkscn -I/usr/include/vtk/token -I/usr/include/vtk/vtkkissfft -I/usr/include/vtk/vtkglad -I/usr/include/qt6/QtOpenGL -I/usr/include/qt6 -I/usr/include/qt6/QtCore -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtGui -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtOpenGLWidgets -I/usr/include/python3.14 -I/usr/include/vtk/vtkloguru -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/vtk/vtkxdmf2/libsrc -I/usr/include/vtk/vtkvpic -I/usr/include/utf8cpp -I/usr/include/vtk/vtkexodusII -I/usr/include/tao -I/usr/include/vtk/vtkioss -I/usr/include/vtk/vtkh5hut/src/include -I/usr/include/vtk/vtkh5hut -I/usr/include/vtk/vtkgl2ps -I/usr/include/qt6/QtSql -I/usr/include/qt6/QtQuick -I/usr/include/qt6/QtQml -I/usr/include/qt6/QtQmlIntegration -I/usr/include/qt6/QtNetwork -I/usr/include/vtk/vtkmetaio -I/usr/include/vtk/vtkverdict -isystem /usr/include/vtk -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -Wno-deprecated -fopenmp -MD -MT mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o -MF mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o.d -o mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:104:7: warning: declaration of ‘char* basename(char*)’ has a different exception specifier 104 | char *basename (char* path) | ^~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/macros.h:97, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:28: /usr/include/string.h:567:20: note: from previous declaration ‘char* basename(char*) noexcept’ 567 | extern "C++" char *basename (char *__filename) | ^~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx: In function ‘int mris_mesh_subdivide__convert_mris_VTK(MRI_SURFACE*, vtkPolyData*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:349:18: warning: ‘vtkTypeBool vtkCellArray::Allocate(vtkIdType, vtkIdType)’ is deprecated: Use AllocateEstimate or AllocateExact instead. [-Wdeprecated-declarations] 349 | faces->Allocate( mris->nfaces ); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_mesh_subdivide/mris_mesh_subdivide.cxx:52: /usr/include/vtk/vtkCellArray.h:228:15: note: declared here 228 | vtkTypeBool Allocate(vtkIdType sz, vtkIdType vtkNotUsed(ext) = 1000) | ^~~~~~~~ [1166/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o -MF mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o.d -o mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1167/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o -MF mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o.d -o mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp:35: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp:39: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_niters2fwhm/mris_niters2fwhm.cpp:93:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 93 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1168/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o -MF mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o.d -o mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_parcellate_connectivity/mris_parcellate_connectivity.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_parcellate_connectivity/mris_parcellate_connectivity.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1169/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o -MF mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o.d -o mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_multiscale_stats/mris_multiscale_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_multiscale_stats/mris_multiscale_stats.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1170/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_SSocket.cpp [1171/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_label.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_label.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1172/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_SMessage.cpp [1173/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmOverlay.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmOverlay.h:33, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmOverlay.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1174/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_vertex.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_vertex.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_vertex.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1175/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmProg.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmProg.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/C_mpmProg.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1176/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_surface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_surface.h:26, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/c_surface.cpp:23: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1177/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/oclDijkstraKernel.cpp [1178/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/asynch.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/asynch.cpp:24: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1179/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/dijkstra.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/dijkstra.h:31, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/dijkstra.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1180/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp: In function ‘char* rel2abs(const char*, const char*, char*, size_t)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp:68:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 68 | if (length >= size) | ~~~~~~~^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/rel2abs.cpp:119:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 119 | if (length >= size) | ~~~~~~~^~~~~~~ [1181/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1182/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/legacy.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1183/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.cpp:20: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1184/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/surface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/surface.h:20, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/surface.cpp:16: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1185/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/scanopt.cpp [1186/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/mris_pmake.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/general.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/help.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/mris_pmake.cpp:50: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1187/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_pmake -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o -MF mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o.d -o mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.h:38, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_pmake/env.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1188/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o -MF mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o.d -o mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare] 334 | for (n = 0 ; n < SUBCORTICAL_LABEL_COUNT ; n++) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_label_map/mris_register_label_map.cpp:185:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1189/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o -MF mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o.d -o mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remove_variance/mris_remove_variance.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remove_variance/mris_remove_variance.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1190/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o -MF mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o.d -o mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_volume.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_volume.cpp:105: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1191/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o -MF mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o.d -o mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_register_to_volume/mris_register_to_label.cpp:98: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1192/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o -MF mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o.d -o mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rescale/mris_rescale.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rescale/mris_rescale.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1193/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o -MF mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o.d -o mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reverse/mris_reverse.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reverse/mris_reverse.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1194/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o -MF mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o.d -o mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/mris_remesh.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/mris_remesh.cpp:2: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1195/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o -MF mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o.d -o mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rotate/mris_rotate.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rotate/mris_rotate.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1196/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o -MF mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o.d -o mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rf_label/mris_rf_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rf_label/mris_rf_label.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1197/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o -MF mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o.d -o mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rf_train/mris_rf_train.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_rf_train/mris_rf_train.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1198/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o -MF mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o.d -o mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sample_label/mris_sample_label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sample_label/mris_sample_label.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1199/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o -MF mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o.d -o mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp:80: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp:81: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fmriutils.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp:91: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:26:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 26 | typedef struct { | ^ | GLMMAT /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/fsglm.h:90:7: note: type is not C-compatible because ‘GLMMAT::debug’ has default member initializer 90 | int debug=0; | ^~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_seg2annot/mris_seg2annot.cpp:140:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 140 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1200/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o -MF mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o.d -o mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sample_parc/mris_sample_parc.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_sample_parc/mris_sample_parc.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1201/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o -MF mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o.d -o mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_segment_vals/mris_segment_vals.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_segment_vals/mris_segment_vals.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1202/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o -MF mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o.d -o mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_segmentation_stats/mris_segmentation_stats.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_segmentation_stats/mris_segmentation_stats.cpp:31: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1203/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_remesh -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o -MF mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o.d -o mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.h:8, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp:9: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp: In constructor ‘Remesher::Remesher(const MRIS*)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp:19:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 19 | for (unsigned int i = 0; i < surf->nvertices; i++) { | ~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_remesh/remesher.cpp:27:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 27 | for (unsigned int i = 0; i < surf->nfaces; i++) { | ~~^~~~~~~~~~~~~~ [1204/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o -MF mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o.d -o mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_segment/mris_segment.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_segment/mris_segment.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1205/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o -MF mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o.d -o mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_shrinkwrap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_shrinkwrap.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1206/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_reposition_surface -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o -MF mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o.d -o mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp:7: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_reposition_surface/mris_reposition_surface.cpp:63:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘nlohmann::basic_json<>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | for (int i = 0; i < js_pts.size(); i++) { | ~~^~~~~~~~~~~~~~~ [1207/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o -MF mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o.d -o mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_AA_shrinkwrap.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisegment.h:74, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_shrinkwrap/mris_AA_shrinkwrap.cpp:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1208/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o -MF mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o.d -o mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:137:24: warning: ‘/label/’ directive writing 7 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 137 | sprintf(fname, "%s/%s/label/%s.%s", sdir, subject, hemi, argv[3]) ; | ^~~~~~~ In file included from /usr/include/stdio.h:974, from /usr/include/c++/16/cstdio:47, from /usr/include/c++/16/ext/string_conversions.h:47, from /usr/include/c++/16/bits/basic_string.h:4499, from /usr/include/c++/16/string:58, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : In function ‘sprintf’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_simulate_atrophy/mris_simulate_atrophy.cpp:137:10: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 10 or more bytes (assuming 1033) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [1209/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o -MF mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o.d -o mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_smooth_intracortical/mris_smooth_intracortical.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_smooth_intracortical/mris_smooth_intracortical.cpp:57: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1210/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o -MF mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o.d -o mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_talairach/mris_talairach.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_talairach/mris_talairach.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1211/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o -MF mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o.d -o mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_surface_to_vol_distances/mris_surface_to_vol_distances.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_surface_to_vol_distances/mris_surface_to_vol_distances.cpp:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1212/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o -MF mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o.d -o mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spherical_average/mris_spherical_average.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spherical_average/mris_spherical_average.cpp:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1213/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o -MF mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o.d -o mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness_comparison/mris_thickness_comparison.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_thickness_comparison/mris_thickness_comparison.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1214/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o -MF mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o.d -o mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mriTransform.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mri2.h:24, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:52: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:57: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘std::vector > MRISspinTest::SpinPerm(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:475:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 475 | for(int k=0; k < cc.size(); k++) ccperm[n][3+k] = cc[k]; | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘std::vector MRISspinTest::PermTest(std::vector, std::vector >, int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:489:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 489 | for(int n=0; n < ccperm.size(); n++){ | ~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:490:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 490 | for(int k=0; k < cc.size();k++){ | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:500:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 500 | for(int k=0; k < cc.size();k++) { | ~~^~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘int MRISspinTest::PrintMatrix(FILE*, std::vector >)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:554:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 554 | for(int n=0; n < m.size(); n++){ | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘int MRISspinTest::PrintVector(FILE*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:562:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 562 | for(int k=0; k < mrow.size(); k++) fprintf(fp,"%8.4f ",mrow[k]); | ~~^~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In member function ‘int MRISspinTest::PrintVectorGlmFit(FILE*, std::vector)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:570:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 570 | for(int c=0; c < m.size(); c++) fprintf(fp,"%2d %8.4lf\n",c,m[c]); | ~~^~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_spintest/mris_spintest.cpp:124:9: warning: ignoring return value of ‘char* getcwd(char*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 124 | getcwd(cwd,2000); | ~~~~~~^~~~~~~~~~ [1215/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_transform -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o -MF mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o.d -o mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_transform/mris_transform.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_transform/mris_transform.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1216/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o -MF mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o.d -o mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_translate_annotation/mris_translate_annotation.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_translate_annotation/mris_translate_annotation.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1217/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o -MF mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o.d -o mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_transmantle_dysplasia_paths/mris_transmantle_dysplasia_paths.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_transmantle_dysplasia_paths/mris_transmantle_dysplasia_paths.cpp:37: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1218/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o -MF mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o.d -o mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_volume.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_volume.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_volume.cpp:47: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:49:16: warning: anonymous non-C-compatible type given name for linkage purposes by ‘typedef’ declaration [-Wnon-c-typedef-for-linkage] 49 | typedef struct { | ^ | AVERAGE_SURFACE_PARAMS /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisutils.h:61:8: note: type is not C-compatible because ‘AVERAGE_SURFACE_PARAMS::DestLTA’ has default member initializer 61 | LTA *DestLTA=NULL; | ^~~~~~~ [1219/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o -MF mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o.d -o mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_wm_volume.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_volume/mris_wm_volume.cpp:28: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1220/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o -MF mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o.d -o mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp: At global scope: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp:81:7: warning: declaration of ‘char* basename(char*)’ has a different exception specifier 81 | char *basename (char* path) | ^~~~~~~~ In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/macros.h:97, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_warp/mris_warp.cpp:29: /usr/include/string.h:567:20: note: from previous declaration ‘char* basename(char*) noexcept’ 567 | extern "C++" char *basename (char *__filename) | ^~~~~~~~ [1221/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mris_watershed -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o -MF mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o.d -o mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_watershed/mris_watershed.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_watershed/mris_watershed.cpp:27: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1222/1580] : && /usr/bin/cmake -E rm -f qdecproject/libqdecproject.a && /usr/bin/ar qc qdecproject/libqdecproject.a qdecproject/CMakeFiles/qdecproject.dir/QdecContrast.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecDataTable.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecFactor.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmDesign.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFit.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecGlmFitResults.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecProject.cxx.o qdecproject/CMakeFiles/qdecproject.dir/QdecSubject.cxx.o && /usr/bin/ranlib qdecproject/libqdecproject.a && : [1223/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/mrisp_write -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o -MF mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o.d -o mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mrisp_write/mrisp_write.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mrisp_write/mrisp_write.cpp:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1224/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/nmovie_qt -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -MD -MT nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o -MF nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o.d -o nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o -c 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o -MF oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o.d -o oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/oct_register_mosaic/oct_register_mosaic.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrimorph.h:22, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/oct_register_mosaic/oct_register_mosaic.cpp:36: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1229/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/glut -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive 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-I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/nmovie_qt -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT template/CMakeFiles/template.dir/template.cpp.o -MF template/CMakeFiles/template.dir/template.cpp.o.d -o template/CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/template/template.cpp [1233/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o -MF stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o.d -o stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/stat_normalize/stat_normalize.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf.h:25, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/stat_normalize/stat_normalize.cpp:26: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1234/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dicom -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/dcm2niix -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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-DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT tridec/CMakeFiles/tridec.dir/tridec.cpp.o -MF tridec/CMakeFiles/tridec.dir/tridec.cpp.o.d -o tridec/CMakeFiles/tridec.dir/tridec.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp: In function ‘int main(int, char**)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:90:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 90 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 92 | fgets(line,STRLEN,fp1); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:97:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets(line,STRLEN,fp1); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:102:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 102 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:105:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 105 | fgets(line,STRLEN,fp2); | ~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/tridec/tridec.cpp:110:10: 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-Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=utils/CMakeFiles/fsPrintHelp.dir/link.d utils/CMakeFiles/fsPrintHelp.dir/fsPrintHelp.cpp.o -o utils/fsPrintHelp -lxml2 /usr/lib64/libz.so && : [1243/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o -MF ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o.d -o ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/ventfix/ventfix_main.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/volcluster.h:21, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/ventfix.h:5, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/ventfix/ventfix_main.cpp:4: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1244/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/nmovie_qt/nmovie_qt_autogen/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/nmovie_qt -I/usr/include/qt6/QtCore -I/usr/include/qt6 -I/usr/lib64/qt6/mkspecs/linux-g++ -I/usr/include/qt6/QtWidgets -I/usr/include/qt6/QtGui -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -MD -MT nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o -MF nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o.d -o nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/nmovie_qt/main.cpp In file included from /usr/include/qt6/QtCore/QtCore:46, from /usr/include/qt6/QtWidgets/QtWidgetsDepends:3, from /usr/include/qt6/QtWidgets/QtWidgets:3, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/nmovie_qt/main.cpp:3: /usr/include/qt6/QtCore/qbitarray.h:13:21: warning: defining ‘QBitArray’, which previously failed to be complete in a SFINAE context [-Wsfinae-incomplete=] 13 | class Q_CORE_EXPORT QBitArray | ^~~~~~~~~ In file included from /usr/include/c++/16/string:56, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/bits/ostream.h:43, from /usr/include/c++/16/ostream:42, from /usr/include/c++/16/iostream:43, from : /usr/include/c++/16/bits/range_access.h:325:24: note: here. Use ‘-Wsfinae-incomplete=2’ for a diagnostic at that point 325 | -> decltype(__cont.data()) | ~~~~~~~^~~~ [1245/1580] /usr/bin/g++ -DHAVE_OPENGL -DHAVE_OPENMP -DHAVE_ZLIB -DITK_USE_SYSTEM_ZLIB -DLinux -DUSING_DCM2NIIXFSWRAPPER -DUSING_MGH_NIFTI_IO -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/redhat-linux-build/include -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/minc -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/netcdf -I/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/packages/nifti -I/usr/include/ITK-5.4 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -std=c++17 -fopenmp -MD -MT pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o -MF pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o.d -o pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o -c /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/pointset2label/pointset2label.cpp In file included from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/transform.h:27, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/mrisurf_aaa.h:209, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/label.h:32, from /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/pointset2label/pointset2label.cpp:4: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, double, double, double, double)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:48:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 48 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘int fsPointSet::set(int, Point)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:56:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 56 | if(i < 0 || i >= points.size()) return(1); | ~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h: In member function ‘fsPointSet::Point fsPointSet::get(int)’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/pointset.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | if(i < 0 || i >= points.size()) { | ~~^~~~~~~~~~~~~~~~ [1246/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=io/CMakeFiles/fs_temp_file.dir/link.d io/CMakeFiles/fs_temp_file.dir/fs_temp_file.cpp.o -o io/fs_temp_file utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1247/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=io/CMakeFiles/fs_temp_dir.dir/link.d io/CMakeFiles/fs_temp_dir.dir/fs_temp_dir.cpp.o -o io/fs_temp_dir utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1248/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=lta_convert/CMakeFiles/lta_convert.dir/link.d lta_convert/CMakeFiles/lta_convert.dir/lta_convert.cpp.o -o lta_convert/lta_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1249/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_and/CMakeFiles/mri_and.dir/link.d mri_and/CMakeFiles/mri_and.dir/mri_and.cpp.o -o mri_and/mri_and utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1250/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_and/CMakeFiles/mri_or.dir/link.d mri_and/CMakeFiles/mri_or.dir/mri_or.cpp.o -o mri_and/mri_or utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1251/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/link.d mri_add_xform_to_header/CMakeFiles/mri_add_xform_to_header.dir/mri_add_xform_to_header.cpp.o -o mri_add_xform_to_header/mri_add_xform_to_header utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1252/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/link.d AntsDenoiseImageFs/CMakeFiles/AntsDenoiseImageFs.dir/AntsDenoiseImageFs.cpp.o -o AntsDenoiseImageFs/AntsDenoiseImageFs utils/libutils.a /usr/lib64/libITKCommon-5.4.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm -lm -ldl -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1253/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/link.d AntsN4BiasFieldCorrectionFs/CMakeFiles/AntsN4BiasFieldCorrectionFs.dir/AntsN4BiasFieldCorrectionFs.cpp.o -o AntsN4BiasFieldCorrectionFs/AntsN4BiasFieldCorrectionFs utils/libutils.a /usr/lib64/libITKCommon-5.4.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm -lm -ldl -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1254/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_annotation2label/CMakeFiles/mri_annotation2label.dir/link.d mri_annotation2label/CMakeFiles/mri_annotation2label.dir/mri_annotation2label.cpp.o -o mri_annotation2label/mri_annotation2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘MRISaparc2lobes’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp:1070:23, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:206:20: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:101:5: note: declared here In member function ‘deallocate’, inlined from ‘deallocate’ at /usr/include/c++/16/bits/alloc_traits.h:689:23, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:398:19, inlined from ‘_M_deallocate’ at /usr/include/c++/16/bits/stl_vector.h:394:7, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:378:15, inlined from ‘__dt_base ’ at /usr/include/c++/16/bits/stl_vector.h:795:7, inlined from ‘MRISaparc2lobes’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/annotation.cpp:1064:23, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:206:20: /usr/include/c++/16/bits/new_allocator.h:183:66: warning: ‘operator delete’ called on pointer ‘__result’ with nonzero offset 32 [-Wfree-nonheap-object] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp: In function ‘main’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_annotation2label/mri_annotation2label.cpp:101:5: note: declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1255/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/link.d mri_aparc2aseg/CMakeFiles/mri_aparc2aseg.dir/mri_aparc2aseg.cpp.o -o mri_aparc2aseg/mri_aparc2aseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1256/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/link.d mri_aparc2aseg/CMakeFiles/mri_surf2volseg.dir/mri_surf2volseg.cpp.o -o mri_aparc2aseg/mri_surf2volseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1257/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/link.d mri_aparc2wmseg/CMakeFiles/mri_aparc2wmseg.dir/mri_aparc2wmseg.cpp.o -o mri_aparc2wmseg/mri_aparc2wmseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1258/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_binarize/CMakeFiles/mri_binarize.dir/link.d mri_binarize/CMakeFiles/mri_binarize.dir/mri_binarize.cpp.o -o mri_binarize/mri_binarize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1259/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/link.d mri_brainvol_stats/CMakeFiles/mri_brainvol_stats.dir/mri_brainvol_stats.cpp.o -o mri_brainvol_stats/mri_brainvol_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1260/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/link.d mri_ca_normalize/CMakeFiles/mri_ca_normalize.dir/mri_ca_normalize.cpp.o -o mri_ca_normalize/mri_ca_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1261/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_label/CMakeFiles/mri_ca_label.dir/link.d mri_ca_label/CMakeFiles/mri_ca_label.dir/mri_ca_label.cpp.o -o mri_ca_label/mri_ca_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1262/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cc/CMakeFiles/mri_cc.dir/link.d mri_cc/CMakeFiles/mri_cc.dir/mri_cc.cpp.o -o mri_cc/mri_cc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1263/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_register/CMakeFiles/mri_ca_register.dir/link.d mri_ca_register/CMakeFiles/mri_ca_register.dir/mri_ca_register.cpp.o -o mri_ca_register/mri_ca_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1264/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/link.d mri_compute_overlap/CMakeFiles/mri_compute_overlap.dir/mri_compute_overlap.cpp.o -o mri_compute_overlap/mri_compute_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1265/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/link.d mri_compute_seg_overlap/CMakeFiles/mri_compute_seg_overlap.dir/mri_compute_seg_overlap.cpp.o -o mri_compute_seg_overlap/mri_compute_seg_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1266/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concat/CMakeFiles/mri_concat.dir/link.d mri_concat/CMakeFiles/mri_concat.dir/mri_concat.cpp.o -o mri_concat/mri_concat utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1267/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/link.d mri_concatenate_lta/CMakeFiles/mri_concatenate_lta.dir/mri_concatenate_lta.cpp.o -o mri_concatenate_lta/mri_concatenate_lta utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1268/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_convert/CMakeFiles/mri_convert.dir/link.d mri_convert/CMakeFiles/mri_convert.dir/mri_convert.cpp.o -o mri_convert/mri_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1269/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_convert/CMakeFiles/mri_make_uchar.dir/link.d mri_convert/CMakeFiles/mri_make_uchar.dir/mri_make_uchar.cpp.o -o mri_convert/mri_make_uchar utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1270/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_coreg/CMakeFiles/mri_coreg.dir/link.d mri_coreg/CMakeFiles/mri_coreg.dir/mri_coreg.cpp.o -o mri_coreg/mri_coreg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1271/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_deface/CMakeFiles/mri_deface.dir/link.d mri_deface/CMakeFiles/mri_deface.dir/mri_deface.cpp.o -o mri_deface/mri_deface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1272/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_diff/CMakeFiles/mri_diff.dir/link.d mri_diff/CMakeFiles/mri_diff.dir/mri_diff.cpp.o -o mri_diff/mri_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1273/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/link.d mri_edit_segmentation/CMakeFiles/mri_edit_segmentation.dir/mri_edit_segmentation.cpp.o -o mri_edit_segmentation/mri_edit_segmentation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1274/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_deface/CMakeFiles/mri_defacer.dir/link.d mri_deface/CMakeFiles/mri_defacer.dir/mri_defacer.cpp.o -o mri_deface/mri_defacer utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1275/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dualperm/CMakeFiles/mri_dualperm.dir/link.d mri_dualperm/CMakeFiles/mri_dualperm.dir/mri_dualperm.cpp.o -o mri_dualperm/mri_dualperm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1276/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/link.d mri_edit_wm_with_aseg/CMakeFiles/mri_edit_wm_with_aseg.dir/mri_edit_wm_with_aseg.cpp.o -o mri_edit_wm_with_aseg/mri_edit_wm_with_aseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1277/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/link.d mri_edit_segmentation_with_surfaces/CMakeFiles/mri_edit_segmentation_with_surfaces.dir/mri_edit_segmentation_with_surfaces.cpp.o -o mri_edit_segmentation_with_surfaces/mri_edit_segmentation_with_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1278/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_em_register/CMakeFiles/mri_em_register.dir/link.d mri_em_register/CMakeFiles/mri_em_register.dir/mri_em_register.cpp.o mri_em_register/CMakeFiles/mri_em_register.dir/findtranslation.cpp.o mri_em_register/CMakeFiles/mri_em_register.dir/emregisterutils.cpp.o -o mri_em_register/mri_em_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1279/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/link.d mri_extract_largest_CC/CMakeFiles/mri_extract_largest_CC.dir/mri_extract_largest_CC.cpp.o -o mri_extract_largest_CC/mri_extract_largest_CC utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1280/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fwhm/CMakeFiles/mri_fwhm.dir/link.d mri_fwhm/CMakeFiles/mri_fwhm.dir/mri_fwhm.cpp.o -o mri_fwhm/mri_fwhm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1281/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/link.d mri_fuse_segmentations/CMakeFiles/mri_fuse_segmentations.dir/mri_fuse_segmentations.cpp.o -o mri_fuse_segmentations/mri_fuse_segmentations utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1282/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fill/CMakeFiles/mri_fill.dir/link.d mri_fill/CMakeFiles/mri_fill.dir/mri_fill.cpp.o -o mri_fill/mri_fill utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1283/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gcut/CMakeFiles/mri_gcut.dir/link.d mri_gcut/CMakeFiles/mri_gcut.dir/mri_gcut.cpp.o -o mri_gcut/mri_gcut utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1284/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/link.d mri_matrix_multiply/CMakeFiles/mri_matrix_multiply.dir/mri_matrix_multiply.cpp.o -o mri_matrix_multiply/mri_matrix_multiply utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1285/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_info/CMakeFiles/mri_info.dir/link.d mri_info/CMakeFiles/mri_info.dir/mri_info.cpp.o -o mri_info/mri_info utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1286/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label2label/CMakeFiles/mri_label2label.dir/link.d mri_label2label/CMakeFiles/mri_label2label.dir/mri_label2label.cpp.o -o mri_label2label/mri_label2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1287/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/link.d mri_log_likelihood/CMakeFiles/mri_log_likelihood.dir/mri_log_likelihood.cpp.o -o mri_log_likelihood/mri_log_likelihood utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1288/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label2vol/CMakeFiles/mri_label2vol.dir/link.d mri_label2vol/CMakeFiles/mri_label2vol.dir/mri_label2vol.cpp.o -o mri_label2vol/mri_label2vol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1289/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mask/CMakeFiles/mri_mask.dir/link.d mri_mask/CMakeFiles/mri_mask.dir/mri_mask.cpp.o -o mri_mask/mri_mask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1290/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mri_mc.dir/link.d mri_mc/CMakeFiles/mri_mc.dir/mri_mc.cpp.o -o mri_mc/mri_mc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1291/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mri_pretess.dir/link.d mri_mc/CMakeFiles/mri_pretess.dir/mri_pretess.cpp.o -o mri_mc/mri_pretess utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1292/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_probedicom/CMakeFiles/mri_probedicom.dir/link.d mri_probedicom/CMakeFiles/mri_probedicom.dir/mri_probedicom.cpp.o -o mri_probedicom/mri_probedicom utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1293/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mc/CMakeFiles/mris_extract_main_component.dir/link.d mri_mc/CMakeFiles/mris_extract_main_component.dir/mris_extract_main_component.cpp.o -o mri_mc/mris_extract_main_component utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1294/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize/CMakeFiles/mri_normalize.dir/link.d mri_normalize/CMakeFiles/mri_normalize.dir/mri_normalize.cpp.o -o mri_normalize/mri_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1295/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize/CMakeFiles/mri_long_normalize.dir/link.d mri_normalize/CMakeFiles/mri_long_normalize.dir/mri_long_normalize.cpp.o -o mri_normalize/mri_long_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1296/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/link.d mri_normalize_tp2/CMakeFiles/mri_normalize_tp2.dir/mri_normalize_tp2.cpp.o -o mri_normalize_tp2/mri_normalize_tp2 utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1297/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/link.d mri_relabel_nonwm_hypos/CMakeFiles/mri_relabel_nonwm_hypos.dir/mri_relabel_nonwm_hypos.cpp.o -o mri_relabel_nonwm_hypos/mri_relabel_nonwm_hypos utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1298/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_refine_seg/CMakeFiles/mri_refine_seg.dir/link.d mri_refine_seg/CMakeFiles/mri_refine_seg.dir/mri_refine_seg.cpp.o -o mri_refine_seg/mri_refine_seg utils/libutils.a utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1299/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/link.d mri_relabel_hypointensities/CMakeFiles/mri_relabel_hypointensities.dir/mri_relabel_hypointensities.cpp.o -o mri_relabel_hypointensities/mri_relabel_hypointensities utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1300/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_remove_neck/CMakeFiles/mri_remove_neck.dir/link.d mri_remove_neck/CMakeFiles/mri_remove_neck.dir/mri_remove_neck.cpp.o -o mri_remove_neck/mri_remove_neck utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1301/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_robust_register.dir/link.d mri_robust_register/CMakeFiles/mri_robust_register.dir/mri_robust_register.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/JointHisto.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/Quaternion.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/Registration.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegRobust.cpp.o mri_robust_register/CMakeFiles/mri_robust_register.dir/RegPowell.cpp.o -o mri_robust_register/mri_robust_register utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/16/libgfortran.so -lquadmath packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1302/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/lta_diff.dir/link.d mri_robust_register/CMakeFiles/lta_diff.dir/lta_diff.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/Registration.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/lta_diff.dir/Quaternion.cpp.o -o mri_robust_register/lta_diff utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/16/libgfortran.so -lquadmath packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1303/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_create_tests.dir/link.d mri_robust_register/CMakeFiles/mri_create_tests.dir/mri_create_tests.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_create_tests.dir/Quaternion.cpp.o -o mri_robust_register/mri_create_tests utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/16/libgfortran.so -lquadmath packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1304/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_robust_template.dir/link.d mri_robust_register/CMakeFiles/mri_robust_template.dir/mri_robust_template.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/Registration.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/RegRobust.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/CostFunctions.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMatrix.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MyMRI.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/Quaternion.cpp.o mri_robust_register/CMakeFiles/mri_robust_template.dir/MultiRegistration.cpp.o -o mri_robust_register/mri_robust_template utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/16/libgfortran.so -lquadmath packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1305/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -z muldefs -Wl,--dependency-file=mri_robust_register/CMakeFiles/mri_gradient_info.dir/link.d mri_robust_register/CMakeFiles/mri_gradient_info.dir/mri_gradient_info.cpp.o -o mri_robust_register/mri_gradient_info utils/libutils.a /usr/lib64/liblapack.so.3 /usr/lib64/libblas.so.3 /usr/lib/gcc/x86_64-redhat-linux/16/libgfortran.so -lquadmath packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1306/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/link.d mri_seg_overlap/CMakeFiles/mri_seg_overlap.dir/mri_seg_overlap.cpp.o -o mri_seg_overlap/mri_seg_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1307/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seg_diff/CMakeFiles/mri_seg_diff.dir/link.d mri_seg_diff/CMakeFiles/mri_seg_diff.dir/mri_seg_diff.cpp.o -o mri_seg_diff/mri_seg_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1308/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segment/CMakeFiles/mri_segment.dir/link.d mri_segment/CMakeFiles/mri_segment.dir/mri_segment.cpp.o -o mri_segment/mri_segment utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1309/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segreg/CMakeFiles/mri_segreg.dir/link.d mri_segreg/CMakeFiles/mri_segreg.dir/mri_segreg.cpp.o -o mri_segreg/mri_segreg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1310/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_tessellate/CMakeFiles/ico_supersample.dir/link.d mri_tessellate/CMakeFiles/ico_supersample.dir/ico_supersample.cpp.o -o mri_tessellate/ico_supersample utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : [1311/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_si_prep/CMakeFiles/mri_si_prep.dir/link.d mri_si_prep/CMakeFiles/mri_si_prep.dir/mri_si_prep.cpp.o -o mri_si_prep/mri_si_prep utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1312/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segstats/CMakeFiles/mri_segstats.dir/link.d mri_segstats/CMakeFiles/mri_segstats.dir/mri_segstats.cpp.o -o mri_segstats/mri_segstats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1313/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_stats2seg/CMakeFiles/mri_stats2seg.dir/link.d mri_stats2seg/CMakeFiles/mri_stats2seg.dir/mri_stats2seg.cpp.o -o mri_stats2seg/mri_stats2seg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1314/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surf2surf/CMakeFiles/mri_surf2surf.dir/link.d mri_surf2surf/CMakeFiles/mri_surf2surf.dir/mri_surf2surf.cpp.o -o mri_surf2surf/mri_surf2surf utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1315/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surf2vol/CMakeFiles/mri_surf2vol.dir/link.d mri_surf2vol/CMakeFiles/mri_surf2vol.dir/mri_surf2vol.cpp.o -o mri_surf2vol/mri_surf2vol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1316/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surfcluster/CMakeFiles/mri_surfcluster.dir/link.d mri_surfcluster/CMakeFiles/mri_surfcluster.dir/mri_surfcluster.cpp.o -o mri_surfcluster/mri_surfcluster utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1317/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_tessellate/CMakeFiles/mri_tessellate.dir/link.d mri_tessellate/CMakeFiles/mri_tessellate.dir/mri_tessellate.cpp.o -o mri_tessellate/mri_tessellate utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1318/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_voldiff/CMakeFiles/mri_voldiff.dir/link.d mri_voldiff/CMakeFiles/mri_voldiff.dir/mri_voldiff.cpp.o -o mri_voldiff/mri_voldiff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1319/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_vol2surf/CMakeFiles/mri_vol2surf.dir/link.d mri_vol2surf/CMakeFiles/mri_vol2surf.dir/mri_vol2surf.cpp.o -o mri_vol2surf/mri_vol2surf utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1320/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_vol2vol/CMakeFiles/mri_vol2vol.dir/link.d mri_vol2vol/CMakeFiles/mri_vol2vol.dir/mri_vol2vol.cpp.o -o mri_vol2vol/mri_vol2vol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1321/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/CMakeFiles/mri_watershed.dir/link.d mri_watershed/CMakeFiles/mri_watershed.dir/mri_watershed.cpp.o -o mri_watershed/mri_watershed utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:170:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/mri_watershed.cpp:172:17: note: the first difference of corresponding definitions is field ‘type’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1322/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/link.d mri_watershed/CMakeFiles/mri_validate_skull_stripped.dir/mri_validate_skull_stripped.cpp.o -o mri_watershed/mri_validate_skull_stripped utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1323/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/link.d mri_watershed/brain_volume/CMakeFiles/mri_brain_volume.dir/mri_brain_volume.cpp.o -o mri_watershed/brain_volume/mri_brain_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:70:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_watershed/brain_volume/mri_brain_volume.cpp:71:17: note: the first difference of corresponding definitions is field ‘type’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1324/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_annot_diff/CMakeFiles/mris_annot_diff.dir/link.d mris_annot_diff/CMakeFiles/mris_annot_diff.dir/mris_annot_diff.cpp.o -o mris_annot_diff/mris_annot_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1325/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/link.d mris_anatomical_stats/CMakeFiles/mris_anatomical_stats.dir/mris_anatomical_stats.cpp.o -o mris_anatomical_stats/mris_anatomical_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1326/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_calc/CMakeFiles/mris_calc.dir/link.d mris_calc/CMakeFiles/mris_calc.dir/mris_calc.cpp.o -o mris_calc/mris_calc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1327/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ca_label/CMakeFiles/mris_ca_label.dir/link.d mris_ca_label/CMakeFiles/mris_ca_label.dir/mris_ca_label.cpp.o -o mris_ca_label/mris_ca_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘MRISsegmentAnnotated’, inlined from ‘GCSArelabelIslands.constprop.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gcsa.cpp:2487:25: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15197:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘GCSArelabelIslands.constprop.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1328/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_convert/CMakeFiles/mris_convert.dir/link.d mris_convert/CMakeFiles/mris_convert.dir/mris_convert.cpp.o -o mris_convert/mris_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1329/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_curvature/CMakeFiles/mris_curvature.dir/link.d mris_curvature/CMakeFiles/mris_curvature.dir/mris_curvature.cpp.o -o mris_curvature/mris_curvature utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1330/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/link.d mris_curvature_stats/CMakeFiles/mris_curvature_stats.dir/mris_curvature_stats.cpp.o -o mris_curvature_stats/mris_curvature_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1331/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/link.d mris_defects_pointset/CMakeFiles/mris_defects_pointset.dir/mris_defects_pointset.cpp.o -o mris_defects_pointset/mris_defects_pointset utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1332/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/link.d mris_divide_parcellation/CMakeFiles/mris_divide_parcellation.dir/mris_divide_parcellation.cpp.o -o mris_divide_parcellation/mris_divide_parcellation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1333/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_diff/CMakeFiles/mris_diff.dir/link.d mris_diff/CMakeFiles/mris_diff.dir/mris_diff.cpp.o -o mris_diff/mris_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1334/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_euler_number/CMakeFiles/mris_euler_number.dir/link.d mris_euler_number/CMakeFiles/mris_euler_number.dir/mris_euler_number.cpp.o -o mris_euler_number/mris_euler_number utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1335/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/link.d mris_fix_topology/CMakeFiles/mris_remove_intersection.dir/mris_remove_intersection.cpp.o -o mris_fix_topology/mris_remove_intersection utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1336/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fix_topology/CMakeFiles/mris_fix_topology.dir/link.d mris_fix_topology/CMakeFiles/mris_fix_topology.dir/mris_fix_topology.cpp.o -o mris_fix_topology/mris_fix_topology utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1337/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_info/CMakeFiles/mris_info.dir/link.d mris_info/CMakeFiles/mris_info.dir/mris_info.cpp.o -o mris_info/mris_info utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1338/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_inflate/CMakeFiles/mris_inflate.dir/link.d mris_inflate/CMakeFiles/mris_inflate.dir/mris_inflate.cpp.o -o mris_inflate/mris_inflate utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1339/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_jacobian/CMakeFiles/mris_jacobian.dir/link.d mris_jacobian/CMakeFiles/mris_jacobian.dir/mris_jacobian.cpp.o -o mris_jacobian/mris_jacobian utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1340/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label2annot/CMakeFiles/mris_label2annot.dir/link.d mris_label2annot/CMakeFiles/mris_label2annot.dir/mris_label2annot.cpp.o -o mris_label2annot/mris_label2annot utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1341/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_left_right_register/CMakeFiles/mris_left_right_register.dir/link.d mris_left_right_register/CMakeFiles/mris_left_right_register.dir/mris_left_right_register.cpp.o -o mris_left_right_register/mris_left_right_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1342/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_target_pos.dir/link.d mris_make_surfaces/CMakeFiles/mris_target_pos.dir/mris_target_pos.cpp.o -o mris_make_surfaces/mris_target_pos utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1343/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_make_surfaces.dir/mris_make_surfaces.cpp.o -o mris_make_surfaces/mris_make_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1344/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mri_stopmask.dir/link.d mris_make_surfaces/CMakeFiles/mri_stopmask.dir/mri_stopmask.cpp.o -o mris_make_surfaces/mri_stopmask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1345/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/link.d mris_make_surfaces/CMakeFiles/mris_autodet_gwstats.dir/mris_autodet_gwstats.cpp.o -o mris_make_surfaces/mris_autodet_gwstats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1346/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_place_surface.dir/link.d mris_make_surfaces/CMakeFiles/mris_place_surface.dir/mris_place_surface.cpp.o -o mris_make_surfaces/mris_place_surface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1347/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_refine_surfaces.dir/mris_refine_surfaces.cpp.o -o mris_make_surfaces/mris_refine_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1348/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_mef_surfaces.dir/mris_mef_surfaces.cpp.o -o mris_make_surfaces/mris_mef_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1349/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/link.d mris_make_surfaces/CMakeFiles/mris_exvivo_surfaces.dir/mris_exvivo_surfaces.cpp.o -o mris_make_surfaces/mris_exvivo_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1350/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_skeletonize/CMakeFiles/mris_skeletonize.dir/link.d mris_skeletonize/CMakeFiles/mris_skeletonize.dir/mris_skeletonize.cpp.o -o mris_skeletonize/mris_skeletonize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1351/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_smooth/CMakeFiles/mris_smooth.dir/link.d mris_smooth/CMakeFiles/mris_smooth.dir/mris_smooth.cpp.o -o mris_smooth/mris_smooth utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1352/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register/CMakeFiles/mris_register.dir/link.d mris_register/CMakeFiles/mris_register.dir/mris_register.cpp.o -o mris_register/mris_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1353/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/link.d mris_sphere/CMakeFiles/mris_remove_negative_vertices.dir/mris_remove_negative_vertices.cpp.o -o mris_sphere/mris_remove_negative_vertices utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1354/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sphere/CMakeFiles/mris_sphere.dir/link.d mris_sphere/CMakeFiles/mris_sphere.dir/mris_sphere.cpp.o -o mris_sphere/mris_sphere utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1355/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_surface_stats/CMakeFiles/mris_surface_stats.dir/link.d mris_surface_stats/CMakeFiles/mris_surface_stats.dir/mris_surface_stats.cpp.o -o mris_surface_stats/mris_surface_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1356/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_thickness.dir/link.d mris_thickness/CMakeFiles/mris_thickness.dir/mris_thickness.cpp.o -o mris_thickness/mris_thickness utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1357/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_intensity_profile.dir/link.d mris_thickness/CMakeFiles/mris_intensity_profile.dir/mris_intensity_profile.cpp.o -o mris_thickness/mris_intensity_profile utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1358/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness/CMakeFiles/mris_gradient.dir/link.d mris_thickness/CMakeFiles/mris_gradient.dir/mris_gradient.cpp.o -o mris_thickness/mris_gradient utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1359/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/link.d mris_thickness_diff/CMakeFiles/mris_thickness_diff.dir/mris_thickness_diff.cpp.o -o mris_thickness_diff/mris_thickness_diff utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1360/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/analyzeto4dfp.dir/link.d talairach_avi/CMakeFiles/analyzeto4dfp.dir/analyzeto4dfp.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/rec.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/analyzeto4dfp.dir/endianio.c.o -o talairach_avi/analyzeto4dfp && : [1361/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/4dfptoanalyze.dir/link.d talairach_avi/CMakeFiles/4dfptoanalyze.dir/4dfptoanalyze.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/cflip.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Inithdr.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/rec.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/Getifh.c.o talairach_avi/CMakeFiles/4dfptoanalyze.dir/endianio.c.o -o talairach_avi/4dfptoanalyze && : [1362/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/flip_4dfp.dir/link.d talairach_avi/CMakeFiles/flip_4dfp.dir/flip_4dfp.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/flip_4dfp.dir/endianio.c.o -o talairach_avi/flip_4dfp && : [1363/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/zero_lt_4dfp.dir/link.d talairach_avi/CMakeFiles/zero_lt_4dfp.dir/zero_lt_4dfp.c.o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/zero_lt_4dfp.dir/endianio.c.o -o talairach_avi/zero_lt_4dfp && : [1364/1580] : && /usr/bin/gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-error -std=gnu17 -fopenmp -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/ifh2hdr.dir/link.d talairach_avi/CMakeFiles/ifh2hdr.dir/ifh2hdr.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/Inithdr.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/rec.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/Getifh.c.o talairach_avi/CMakeFiles/ifh2hdr.dir/endianio.c.o -o talairach_avi/ifh2hdr && : [1365/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volmask/CMakeFiles/mris_volmask.dir/link.d mris_volmask/CMakeFiles/mris_volmask.dir/mris_volmask.cpp.o mris_volmask/CMakeFiles/mris_volmask.dir/cmd_line_interface.cpp.o -o mris_volmask/mris_volmask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1366/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/gauss_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/gauss_4dfp.dir/gauss_4dfp.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3dd.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/conc.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/gauss_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/gauss_4dfp.dir/param6opr.f.o -o talairach_avi/gauss_4dfp -lgcc_s_asneeded -lgcc_s_asneeded && : [1367/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/link.d mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/face.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/fastloop.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/globals.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/loop.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topo_fixer.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/mris_topology.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/patchdisk.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/segment.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/surface.cpp.o mris_topo_fixer/CMakeFiles/mris_topo_fixer.dir/vertex.cpp.o -o mris_topo_fixer/mris_topo_fixer utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1368/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/compute_vox2vox.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/compute_vox2vox.dir/compute_vox2vox.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/rec.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/Getifh.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/endianio.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/cgauss3d.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/fftsol.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgpad.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/polfit.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/matopr.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/eigen.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/param6opr.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4_sub.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/t4scale.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/fimgreg.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalm.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/imgvalx.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/ffind.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/cflip.c.o talairach_avi/CMakeFiles/compute_vox2vox.dir/set_rnan.f.o talairach_avi/CMakeFiles/compute_vox2vox.dir/ft4imgo.f.o -o talairach_avi/compute_vox2vox -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:64:21: warning: type of ‘set_rnan’ does not match original declaration [-Wlto-type-mismatch] 64 | call set_rnan(imgo(kx,ky,kz)) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: ‘set_rnan’ was previously declared here 1 | subroutine set_rnan(a) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/compute_vox2vox.c:35:17: warning: type of ‘t4_read_’ does not match original declaration [-Wlto-type-mismatch] 35 | extern void t4_read_ (char *t4file, float *t4); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type mismatch in parameter 3 91 | subroutine t4_read(t4_file,t4) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: ‘t4_read’ was previously declared here [1369/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/imgreg_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgreg_4dfp.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/param6opr.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4_sub.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/t4scale.c.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/fimgreg.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalm.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/imgvalx.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/ffind.f.o talairach_avi/CMakeFiles/imgreg_4dfp.dir/cflip.c.o -o talairach_avi/imgreg_4dfp -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/imgreg_4dfp.c:40:17: warning: type of ‘t4file2param_’ does not match original declaration [-Wlto-type-mismatch] 40 | extern void t4file2param_ (int *mode, char *t4file, float *params); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: type mismatch in parameter 4 41 | subroutine t4file2param(mode,t4_file,param) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:41:7: note: ‘t4file2param’ was previously declared here [1370/1580] : && /usr/bin/gfortran -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_avi/CMakeFiles/t4imgs_4dfp.dir/link.d -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fallow-invalid-boz -fallow-argument-mismatch -fopenmp -ffixed-line-length-132 -fno-second-underscore -DNDEBUG talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4imgs_4dfp.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/rec.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/Getifh.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/endianio.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cgauss3d.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fftsol.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgpad.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/polfit.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/matopr.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/eigen.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/param6opr.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4_sub.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/t4scale.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/fimgreg.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalm.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/imgvalx.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ffind.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/cflip.c.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/spline3dvgh.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgo.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/to_711-2B.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4imgn.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/set_rnan.f.o talairach_avi/CMakeFiles/t4imgs_4dfp.dir/ft4ixyz.f.o -o talairach_avi/t4imgs_4dfp -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/ft4imgo.f:64:21: warning: type of ‘set_rnan’ does not match original declaration [-Wlto-type-mismatch] 64 | call set_rnan(imgo(kx,ky,kz)) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: ‘set_rnan’ was previously declared here 1 | subroutine set_rnan(a) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/set_rnan.f:1:7: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4imgs_4dfp.c:41:17: warning: type of ‘t4_read_’ does not match original declaration [-Wlto-type-mismatch] 41 | extern void t4_read_ (char *t4file, float *t4); /* t4_sub.f */ | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type mismatch in parameter 3 91 | subroutine t4_read(t4_file,t4) | ^ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: type ‘long int’ should match type ‘void’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/talairach_avi/t4_sub.f:91:7: note: ‘t4_read’ was previously declared here [1371/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro 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/usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1372/1580] : && /usr/bin/g++ -O2 -flto=auto 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dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/__/cnpy.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/__/exif.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/__/MyUtils.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/DialogSelectFolder.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/DialogWelcome.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/MainWindow.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/main.cpp.o dissection_photo/retrospective_correction/CMakeFiles/retrospective_correction.dir/retrospective_correction_autogen/EWIEGA46WW/qrc_retrospective_correction.cpp.o -o dissection_photo/retrospective_correction/retrospective_correction /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 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dissection_photo/connected_components/CMakeFiles/connected_components.dir/MainWindow.cpp.o dissection_photo/connected_components/CMakeFiles/connected_components.dir/MaskProcessor.cpp.o dissection_photo/connected_components/CMakeFiles/connected_components.dir/main.cpp.o dissection_photo/connected_components/CMakeFiles/connected_components.dir/connected_components_autogen/EWIEGA46WW/qrc_connected_components.cpp.o -o dissection_photo/connected_components/connected_components /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.11.1 && : [1375/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic 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dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/__/WidgetImageView.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/__/cnpy.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/__/exif.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/__/MyUtils.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/DialogWelcome.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/MainWindow.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/main.cpp.o dissection_photo/fiducials_calibration/CMakeFiles/fiducials_calibration.dir/fiducials_calibration_autogen/EWIEGA46WW/qrc_fiducials_calibration.cpp.o -o dissection_photo/fiducials_calibration/fiducials_calibration /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.11.1 && : [1376/1580] : 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dissection_photo/fiducials_correction/fiducials_correction /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.11.1 && : [1377/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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-Wl,--copy-dt-needed-entries -Wl,--as-needed -Wl,--dependency-file=dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/link.d dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/mocs_compilation.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/WidgetImageView.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/cnpy.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/exif.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/__/MyUtils.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogSelectFolder.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/DialogWelcome.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/MainWindow.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/main.cpp.o dissection_photo/mask_extraction/CMakeFiles/mask_extraction.dir/mask_extraction_autogen/EWIEGA46WW/qrc_mask_extraction.cpp.o -o dissection_photo/mask_extraction/mask_extraction /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.11.1 && : [1379/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mrisp_paint/CMakeFiles/mrisp_paint.dir/link.d mrisp_paint/CMakeFiles/mrisp_paint.dir/mrisp_paint.cpp.o -o mrisp_paint/mrisp_paint utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1380/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--copy-dt-needed-entries -Wl,--as-needed -Wl,--dependency-file=dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/link.d dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/dissection_photo_autogen/mocs_compilation.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/WidgetImageView.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/cnpy.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/exif.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/connected_components/MaskProcessor.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/__/MyUtils.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/MainWindow.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/ProgressWindow.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/main.cpp.o dissection_photo/dissection_photo/CMakeFiles/dissection_photo.dir/dissection_photo_autogen/EWIEGA46WW/qrc_dissection_photo.cpp.o -o dissection_photo/dissection_photo/dissection_photo /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.11.1 && : [1381/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=talairach_afd/CMakeFiles/talairach_afd.dir/link.d talairach_afd/CMakeFiles/talairach_afd.dir/talairach_afd.cpp.o -o talairach_afd/talairach_afd utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1382/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections 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/usr/lib64/libvtkImagingStencil.so.1 /usr/lib64/libvtkImagingStatistics.so.1 /usr/lib64/libvtkImagingOpenGL2.so.1 /usr/lib64/libvtkImagingMorphological.so.1 /usr/lib64/libvtkImagingMath.so.1 /usr/lib64/libvtkImagingFourier.so.1 /usr/lib64/libvtkGUISupportQtSQL.so.1 /usr/lib64/libvtkIOSQL.so.1 /usr/lib64/libvtkGUISupportQtQuick.so.1 /usr/lib64/libvtkGUISupportQt.so.1 /usr/lib64/libvtkInteractionWidgets.so.1 /usr/lib64/libvtkRenderingVolume.so.1 /usr/lib64/libvtkRenderingAnnotation.so.1 /usr/lib64/libvtkInteractionStyle.so.1 /usr/lib64/libvtkImagingHybrid.so.1 /usr/lib64/libvtkImagingColor.so.1 /usr/lib64/libvtkGeovisCore.so.1 /usr/lib64/libvtkFiltersTopology.so.1 /usr/lib64/libvtkFiltersTensor.so.1 /usr/lib64/libvtkFiltersSelection.so.1 /usr/lib64/libvtkFiltersSMP.so.1 /usr/lib64/libvtkFiltersPython.so.1 /usr/lib64/libvtkFiltersProgrammable.so.1 /usr/lib64/libvtkFiltersPoints.so.1 /usr/lib64/libvtkFiltersParallelVerdict.so.1 /usr/lib64/libvtkFiltersParallelStatistics.so.1 /usr/lib64/libvtkFiltersParallelImaging.so.1 /usr/lib64/libvtkFiltersParallelDIY2.so.1 /usr/lib64/libvtkFiltersTemporal.so.1 /usr/lib64/libvtkFiltersImaging.so.1 /usr/lib64/libvtkImagingGeneral.so.1 /usr/lib64/libvtkFiltersGeometryPreview.so.1 /usr/lib64/libvtkFiltersGeneric.so.1 /usr/lib64/libvtkFiltersFlowPaths.so.1 /usr/lib64/libvtkFiltersAMR.so.1 /usr/lib64/libvtkFiltersParallel.so.1 /usr/lib64/libvtkFiltersTexture.so.1 /usr/lib64/libvtkFiltersModeling.so.1 /usr/lib64/libvtkDomainsChemistryOpenGL2.so.1 /usr/lib64/libvtkRenderingOpenGL2.so.1 /usr/lib64/libvtkRenderingHyperTreeGrid.so.1 /usr/lib64/libvtkRenderingUI.so.1 /usr/lib64/libvtkFiltersHybrid.so.1 /usr/lib64/libvtkDomainsChemistry.so.1 /usr/lib64/libvtkCommonPython.so.1 /usr/lib64/libvtkChartsCore.so.1 /usr/lib64/libvtkInfovisCore.so.1 /usr/lib64/libvtkFiltersExtraction.so.1 /usr/lib64/libvtkParallelDIY.so.1 /usr/lib64/libvtkIOXML.so.1 /usr/lib64/libvtkIOXMLParser.so.1 /usr/lib64/libvtkParallelCore.so.1 /usr/lib64/libvtkIOLegacy.so.1 /usr/lib64/libvtkIOCellGrid.so.1 /usr/lib64/libvtkFiltersCellGrid.so.1 /usr/lib64/libvtkFiltersStatistics.so.1 /usr/lib64/libvtkFiltersHyperTree.so.1 /usr/lib64/libvtkImagingSources.so.1 /usr/lib64/libvtkIOImage.so.1 /usr/lib64/libvtkDICOMParser.so.1 /usr/lib64/libvtkmetaio.so.1 /usr/lib64/libvtkIOCore.so.1 /usr/lib64/libvtkRenderingContext2D.so.1 /usr/lib64/libvtkRenderingFreeType.so.1 /usr/lib64/libvtkRenderingCore.so.1 /usr/lib64/libvtkFiltersSources.so.1 /usr/lib64/libvtkImagingCore.so.1 /usr/lib64/libvtkFiltersGeneral.so.1 /usr/lib64/libvtkFiltersVerdict.so.1 /usr/lib64/libvtkverdict.so.1 /usr/lib64/libvtkFiltersGeometry.so.1 /usr/lib64/libvtkCommonComputationalGeometry.so.1 /usr/lib64/libvtkFiltersCore.so.1 /usr/lib64/libvtkFiltersReduction.so.1 /usr/lib64/libvtkCommonExecutionModel.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libvtkPythonInterpreter.so.1 /usr/lib64/libxml2.so /usr/lib64/libtheora.so /usr/lib64/libtheoraenc.so /usr/lib64/libogg.so /usr/lib64/libtheoradec.so /usr/lib64/libvtkexodusII.so.1 /usr/lib64/libnetcdf.so.22 /usr/lib64/libhpdf.so /usr/lib64/libpng.so /usr/lib64/libz.so /usr/lib64/libjsoncpp.so /usr/lib64/libpugixml.so.1.15 /usr/lib64/libvtkcgns.so.1 /usr/lib64/libhdf5.so.320.1.1 /usr/lib64/libhdf5_hl.so.320.0.2 /usr/lib64/libQt6Sql.so.6.11.1 /usr/lib64/libsqlite3.so /usr/lib64/libQt6OpenGLWidgets.so.6.11.1 /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Quick.so.6.11.1 /usr/lib64/libQt6OpenGL.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Qml.so.6.11.1 /usr/lib64/libQt6Network.so.6.11.1 /usr/lib64/libQt6Core.so.6.11.1 /usr/lib64/libproj.so /usr/lib64/libvtkglad.so.1 /usr/lib64/libvtkx11.so.1 /usr/lib64/libfreetype.so /usr/lib64/libvtkCommonColor.so.1 /usr/lib64/libvtkCommonDataModel.so.1 /usr/lib64/libvtkCommonSystem.so.1 /usr/lib64/libvtkCommonMisc.so.1 /usr/lib64/libvtkCommonTransforms.so.1 /usr/lib64/libvtkCommonMath.so.1 /usr/lib64/libvtkkissfft.so.1 /usr/lib64/libvtkWrappingPythonCore3.14.so.1 /usr/lib64/libpython3.14.so /usr/lib64/libvtkCommonCore.so.1 /usr/lib64/libvtksys.so.1 -ldl /usr/lib64/libvtkloguru.so.1 /usr/lib64/libfmt.so.11.2.0 /usr/lib64/libvtktoken.so.1 /usr/lib64/libvtkscn.so.1 /usr/lib64/libexpat.so /usr/lib64/libjpeg.so /usr/lib64/libtiff.so /usr/lib64/liblz4.so /usr/lib64/liblzma.so -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1383/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=tkregister2/CMakeFiles/tkregister2_cmdl.dir/link.d tkregister2/CMakeFiles/tkregister2_cmdl.dir/tkregister2.cpp.o -o tkregister2/tkregister2_cmdl utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1384/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=fslutils/CMakeFiles/fsl_label2voxel.dir/link.d fslutils/CMakeFiles/fsl_label2voxel.dir/fsl_label2voxel.cpp.o -o fslutils/fsl_label2voxel utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1385/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/link.d hiam_make_surfaces/CMakeFiles/hiam_make_surfaces.dir/hiam_make_surfaces.cpp.o -o hiam_make_surfaces/hiam_make_surfaces utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1386/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/link.d histo_compute_joint_density/CMakeFiles/histo_compute_joint_density.dir/histo_compute_joint_density.cpp.o -o histo_compute_joint_density/histo_compute_joint_density utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1387/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=histo_synthesize/CMakeFiles/histo_synthesize.dir/link.d histo_synthesize/CMakeFiles/histo_synthesize.dir/histo_synthesize.cpp.o -o histo_synthesize/histo_synthesize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1388/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=histo_register_block/CMakeFiles/histo_register_block.dir/link.d histo_register_block/CMakeFiles/histo_register_block.dir/histo_register_block.cpp.o -o histo_register_block/histo_register_block utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1389/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=hiam_make_template/CMakeFiles/hiam_make_template.dir/link.d hiam_make_template/CMakeFiles/hiam_make_template.dir/hiam_make_template.cpp.o -o hiam_make_template/hiam_make_template utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1390/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=hiam_register/CMakeFiles/hiam_register.dir/link.d hiam_register/CMakeFiles/hiam_register.dir/hiam_register.cpp.o -o hiam_register/hiam_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1391/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=label2flat/CMakeFiles/label2flat.dir/link.d label2flat/CMakeFiles/label2flat.dir/label2flat.cpp.o -o label2flat/label2flat utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1392/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mkxsubjreg/CMakeFiles/mkxsubjreg.dir/link.d mkxsubjreg/CMakeFiles/mkxsubjreg.dir/mkxsubjreg.cpp.o -o mkxsubjreg/mkxsubjreg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1393/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=label2patch/CMakeFiles/label2patch.dir/link.d label2patch/CMakeFiles/label2patch.dir/label2patch.cpp.o -o label2patch/label2patch utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1394/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_bias/CMakeFiles/mri_apply_bias.dir/link.d mri_bias/CMakeFiles/mri_apply_bias.dir/mri_apply_bias.cpp.o -o mri_bias/mri_apply_bias utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1395/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_average/CMakeFiles/mri_average.dir/link.d mri_average/CMakeFiles/mri_average.dir/mri_average.cpp.o -o mri_average/mri_average utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1396/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/link.d mri_ca_tissue_parms/CMakeFiles/mri_ca_tissue_parms.dir/mri_ca_tissue_parms.cpp.o -o mri_ca_tissue_parms/mri_ca_tissue_parms utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1397/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_bias/CMakeFiles/mri_compute_bias.dir/link.d mri_bias/CMakeFiles/mri_compute_bias.dir/mri_compute_bias.cpp.o -o mri_bias/mri_compute_bias utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1398/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ca_train/CMakeFiles/mri_ca_train.dir/link.d mri_ca_train/CMakeFiles/mri_ca_train.dir/mri_ca_train.cpp.o -o mri_ca_train/mri_ca_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1399/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/link.d mri_cal_renormalize_gca/CMakeFiles/mri_cal_renormalize_gca.dir/mri_cal_renormalize_gca.cpp.o -o mri_cal_renormalize_gca/mri_cal_renormalize_gca utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1400/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compile_edits/CMakeFiles/mri_compile_edits.dir/link.d mri_compile_edits/CMakeFiles/mri_compile_edits.dir/mri_compile_edits.cpp.o -o mri_compile_edits/mri_compile_edits utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1401/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/link.d mri_compute_change_map/CMakeFiles/mri_compute_change_map.dir/mri_compute_change_map.cpp.o -o mri_compute_change_map/mri_compute_change_map utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1402/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cnr/CMakeFiles/mri_cnr.dir/link.d mri_cnr/CMakeFiles/mri_cnr.dir/mri_cnr.cpp.o -o mri_cnr/mri_cnr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1403/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/link.d mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_intensities.dir/mri_compute_volume_intensities.cpp.o -o mri_compute_volume_fractions/mri_compute_volume_intensities utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1404/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/link.d mri_compute_volume_fractions/CMakeFiles/mri_compute_volume_fractions.dir/mri_compute_volume_fractions.cpp.o -o mri_compute_volume_fractions/mri_compute_volume_fractions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1405/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/link.d mri_ctab_fix/CMakeFiles/mri_ctab_fix.dir/mri_ctab_fix.cpp.o -o mri_ctab_fix/mri_ctab_fix utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1406/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/link.d mri_compute_volume_fractions/CMakeFiles/mri_compute_layer_fractions.dir/mri_compute_layer_fractions.cpp.o -o mri_compute_volume_fractions/mri_compute_layer_fractions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1407/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/link.d mri_compute_volume_fractions/CMakeFiles/mris_compute_layer_intensities.dir/mris_compute_layer_intensities.cpp.o -o mri_compute_volume_fractions/mris_compute_layer_intensities utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1408/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/link.d mri_concatenate_gcam/CMakeFiles/mri_concatenate_gcam.dir/mri_concatenate_gcam.cpp.o -o mri_concatenate_gcam/mri_concatenate_gcam utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1409/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_copy_values/CMakeFiles/mri_copy_values.dir/link.d mri_copy_values/CMakeFiles/mri_copy_values.dir/mri_copy_values.cpp.o -o mri_copy_values/mri_copy_values utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1410/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/link.d mri_correct_segmentations/CMakeFiles/mri_correct_segmentations.dir/mri_correct_segmentations.cpp.o -o mri_correct_segmentations/mri_correct_segmentations utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1411/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_cor2label/CMakeFiles/mri_cor2label.dir/link.d mri_cor2label/CMakeFiles/mri_cor2label.dir/mri_cor2label.cpp.o -o mri_cor2label/mri_cor2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘LabelRemoveIslandsSurf’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/label.cpp:4180:30: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘LabelRemoveIslandsSurf’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1412/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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/builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1413/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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/usr/lib64/libITKVTK-5.4.so.1 /usr/lib64/libITKImageFeature-5.4.so.1 /usr/lib64/libITKSpatialObjects-5.4.so.1 /usr/lib64/libITKMesh-5.4.so.1 /usr/lib64/libITKTransform-5.4.so.1 /usr/lib64/libITKCommon-5.4.so.1 /usr/lib64/libitkdouble-conversion-5.4.so.1 /usr/lib64/libitksys-5.4.so.1 /usr/lib64/libITKVNLInstantiation-5.4.so.1 -lm -ldl /usr/lib64/libITKSmoothing-5.4.so.1 packages/nifti/libnifti.a /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In member function ‘FindPath’, inlined from ‘FindPath’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/LayerSurface.cpp:2534:32: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2067:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/FSSurface.cpp:2020:26: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ In function ‘find_path’, inlined from ‘find_path’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:235:6, inlined from ‘DoMakePath.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:389:16: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:312:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/freeview/SurfacePath.cpp:265:26: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1414/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/link.d mri_dct_align/CMakeFiles/mri_dct_align_binary.dir/mri_dct_align_binary.cpp.o -o mri_dct_align/mri_dct_align_binary utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1415/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/link.d mri_evaluate_morph/CMakeFiles/mri_evaluate_morph.dir/mri_evaluate_morph.cpp.o -o mri_evaluate_morph/mri_evaluate_morph utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1416/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract/CMakeFiles/mri_extract.dir/link.d mri_extract/CMakeFiles/mri_extract.dir/mri_extract.cpp.o -o mri_extract/mri_extract utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1417/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_distance_transform/CMakeFiles/mri_distance_transform.dir/link.d mri_distance_transform/CMakeFiles/mri_distance_transform.dir/mri_distance_transform.cpp.o -o mri_distance_transform/mri_distance_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1418/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/link.d mri_dist_surf_label/CMakeFiles/mri_dist_surf_label.dir/mri_dist_surf_label.cpp.o -o mri_dist_surf_label/mri_dist_surf_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1419/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/link.d mri_extract_fcd_features/CMakeFiles/mri_extract_fcd_features.dir/mri_extract_fcd_features.cpp.o -o mri_extract_fcd_features/mri_extract_fcd_features utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1420/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_extract_label/CMakeFiles/mri_extract_label.dir/link.d mri_extract_label/CMakeFiles/mri_extract_label.dir/mri_extract_label.cpp.o -o mri_extract_label/mri_extract_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1421/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fdr/CMakeFiles/mri_fdr.dir/link.d mri_fdr/CMakeFiles/mri_fdr.dir/mri_fdr.cpp.o -o mri_fdr/mri_fdr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1422/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fit_bias/CMakeFiles/mri_fit_bias.dir/link.d mri_fit_bias/CMakeFiles/mri_fit_bias.dir/mri_fit_bias.cpp.o -o mri_fit_bias/mri_fit_bias utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1423/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fieldsign/CMakeFiles/mri_fieldsign.dir/link.d mri_fieldsign/CMakeFiles/mri_fieldsign.dir/mri_fieldsign.cpp.o -o mri_fieldsign/mri_fieldsign utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1424/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/link.d mri_fslmat_to_lta/CMakeFiles/mri_fslmat_to_lta.dir/mri_fslmat_to_lta.cpp.o -o mri_fslmat_to_lta/mri_fslmat_to_lta utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1425/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/link.d mri_fuse_intensity_images/CMakeFiles/mri_fuse_intensity_images.dir/mri_fuse_intensity_images.cpp.o -o mri_fuse_intensity_images/mri_fuse_intensity_images utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1426/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/link.d mri_gca_ambiguous/CMakeFiles/mri_gca_ambiguous.dir/mri_gca_ambiguous.cpp.o -o mri_gca_ambiguous/mri_gca_ambiguous utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1427/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_glmfit/CMakeFiles/mri_glmfit.dir/link.d mri_glmfit/CMakeFiles/mri_glmfit.dir/mri_glmfit.cpp.o -o mri_glmfit/mri_glmfit utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1428/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_glmfit/CMakeFiles/mri_mvglmfit.dir/link.d mri_glmfit/CMakeFiles/mri_mvglmfit.dir/mri_mvglmfit.cpp.o -o mri_glmfit/mri_mvglmfit utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1429/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/link.d mri_gradunwarp/CMakeFiles/mri_gradunwarp.dir/mri_gradunwarp.cpp.o -o mri_gradunwarp/mri_gradunwarp utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1430/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_head/CMakeFiles/mri_head.dir/link.d mri_head/CMakeFiles/mri_head.dir/mri_head.cpp.o -o mri_head/mri_head utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1431/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/link.d mri_gtmpvc/CMakeFiles/mri_gtmpvc.dir/mri_gtmpvc.cpp.o -o mri_gtmpvc/mri_gtmpvc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1432/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/link.d mri_hausdorff_dist/CMakeFiles/mri_hausdorff_dist.dir/mri_hausdorff_dist.cpp.o -o mri_hausdorff_dist/mri_hausdorff_dist utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1433/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_gtmseg/CMakeFiles/mri_gtmseg.dir/link.d mri_gtmseg/CMakeFiles/mri_gtmseg.dir/mri_gtmseg.cpp.o -o mri_gtmseg/mri_gtmseg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1434/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_hires_register.dir/link.d mri_hires_register/CMakeFiles/mri_hires_register.dir/mri_hires_register.cpp.o -o mri_hires_register/mri_hires_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1435/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/link.d mri_hires_register/CMakeFiles/mri_linear_align_binary.dir/mri_linear_align_binary.cpp.o -o mri_hires_register/mri_linear_align_binary utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1436/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_compute_distances.dir/link.d mri_hires_register/CMakeFiles/mri_compute_distances.dir/mri_compute_distances.cpp.o -o mri_hires_register/mri_compute_distances utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1437/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/link.d mri_hires_register/CMakeFiles/mri_nl_align_binary.dir/mri_nl_align_binary.cpp.o -o mri_hires_register/mri_nl_align_binary utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1438/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_linear_align.dir/link.d mri_hires_register/CMakeFiles/mri_linear_align.dir/mri_linear_align.cpp.o -o mri_hires_register/mri_linear_align utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1439/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_histo_eq/CMakeFiles/mri_histo_eq.dir/link.d mri_histo_eq/CMakeFiles/mri_histo_eq.dir/mri_histo_eq.cpp.o -o mri_histo_eq/mri_histo_eq utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1440/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_jacobian/CMakeFiles/mri_jacobian.dir/link.d mri_jacobian/CMakeFiles/mri_jacobian.dir/mri_jacobian.cpp.o -o mri_jacobian/mri_jacobian utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1441/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_joint_density/CMakeFiles/mri_joint_density.dir/link.d mri_joint_density/CMakeFiles/mri_joint_density.dir/mri_joint_density.cpp.o -o mri_joint_density/mri_joint_density utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1442/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_hires_register/CMakeFiles/mri_nl_align.dir/link.d mri_hires_register/CMakeFiles/mri_nl_align.dir/mri_nl_align.cpp.o -o mri_hires_register/mri_nl_align utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1443/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label_histo/CMakeFiles/mri_label_histo.dir/link.d mri_label_histo/CMakeFiles/mri_label_histo.dir/mri_label_histo.cpp.o -o mri_label_histo/mri_label_histo utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1444/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label_vals/CMakeFiles/mri_label_vals.dir/link.d mri_label_vals/CMakeFiles/mri_label_vals.dir/mri_label_vals.cpp.o -o mri_label_vals/mri_label_vals utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1445/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_label_volume/CMakeFiles/mri_label_volume.dir/link.d mri_label_volume/CMakeFiles/mri_label_volume.dir/mri_label_volume.cpp.o -o mri_label_volume/mri_label_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1446/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/link.d mri_map_cpdat/CMakeFiles/mri_map_cpdat.dir/mri_map_cpdat.cpp.o -o mri_map_cpdat/mri_map_cpdat utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1447/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/link.d mri_mark_temporal_lobe/CMakeFiles/mri_mark_temporal_lobe.dir/mri_mark_temporal_lobe.cpp.o -o mri_mark_temporal_lobe/mri_mark_temporal_lobe utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1448/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_linear_register/CMakeFiles/mri_linear_register.dir/link.d mri_linear_register/CMakeFiles/mri_linear_register.dir/mri_linear_register.cpp.o -o mri_linear_register/mri_linear_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1449/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mcsim/CMakeFiles/mri_mcsim.dir/link.d mri_mcsim/CMakeFiles/mri_mcsim.dir/mri_mcsim.cpp.o -o mri_mcsim/mri_mcsim utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_mcsim.cpp:469:41: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1450/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mcsim/CMakeFiles/mri_maps2csd.dir/link.d mri_mcsim/CMakeFiles/mri_maps2csd.dir/mri_maps2csd.cpp.o -o mri_mcsim/mri_maps2csd utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mri_mcsim/mri_maps2csd.cpp:147:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1451/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_otl/CMakeFiles/list_otl_labels.dir/link.d mri_otl/CMakeFiles/list_otl_labels.dir/list_otl_labels.cpp.o -o mri_otl/list_otl_labels utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1452/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_mi/CMakeFiles/mri_mi.dir/link.d mri_mi/CMakeFiles/mri_mi.dir/mri_mi.cpp.o -o mri_mi/mri_mi utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1453/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_modify/CMakeFiles/mri_modify.dir/link.d mri_modify/CMakeFiles/mri_modify.dir/mri_modify.cpp.o -o mri_modify/mri_modify utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1454/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_modify/CMakeFiles/mri_copy_params.dir/link.d mri_modify/CMakeFiles/mri_copy_params.dir/mri_copy_params.cpp.o -o mri_modify/mri_copy_params utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1455/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/link.d mri_parse_sdcmdir/CMakeFiles/mri_parse_sdcmdir.dir/mri_parse_sdcmdir.cpp.o -o mri_parse_sdcmdir/mri_parse_sdcmdir utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1456/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_probe_ima/CMakeFiles/mri_probe_ima.dir/link.d mri_probe_ima/CMakeFiles/mri_probe_ima.dir/mri_probe_ima.cpp.o -o mri_probe_ima/mri_probe_ima utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1457/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_morphology/CMakeFiles/mri_morphology.dir/link.d mri_morphology/CMakeFiles/mri_morphology.dir/mri_morphology.cpp.o -o mri_morphology/mri_morphology utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1458/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_nlfilter/CMakeFiles/mri_nlfilter.dir/link.d mri_nlfilter/CMakeFiles/mri_nlfilter.dir/mri_nlfilter.cpp.o -o mri_nlfilter/mri_nlfilter utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1459/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/link.d mri_ms_fitparms/CMakeFiles/mri_ms_fitparms.dir/mri_ms_fitparms.cpp.o -o mri_ms_fitparms/mri_ms_fitparms utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1460/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_paint/CMakeFiles/mri_paint.dir/link.d mri_paint/CMakeFiles/mri_paint.dir/mri_paint.cpp.o -o mri_paint/mri_paint utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1461/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_path2label/CMakeFiles/mri_path2label.dir/link.d mri_path2label/CMakeFiles/mri_path2label.dir/mri_path2label.cpp.o -o mri_path2label/mri_path2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp: In function ‘MRISfindPath.isra’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1881:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisutils.cpp:1841:25: note: at offset -1 into destination object of size [0, 2147483647] allocated by ‘calloc’ [1462/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_polv/CMakeFiles/mri_polv.dir/link.d mri_polv/CMakeFiles/mri_polv.dir/mri_polv.cpp.o -o mri_polv/mri_polv utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1463/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_reduce/CMakeFiles/mri_reduce.dir/link.d mri_reduce/CMakeFiles/mri_reduce.dir/mri_reduce.cpp.o -o mri_reduce/mri_reduce utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1464/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rf_label/CMakeFiles/mri_rf_label.dir/link.d mri_rf_label/CMakeFiles/mri_rf_label.dir/mri_rf_label.cpp.o -o mri_rf_label/mri_rf_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1465/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/link.d mri_rf_long_train/CMakeFiles/mri_rf_long_train.dir/mri_rf_long_train.cpp.o -o mri_rf_long_train/mri_rf_long_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1466/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rf_train/CMakeFiles/mri_rf_train.dir/link.d mri_rf_train/CMakeFiles/mri_rf_train.dir/mri_rf_train.cpp.o -o mri_rf_train/mri_rf_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1467/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/link.d mri_strip_subject_info/CMakeFiles/mri_strip_subject_info.dir/mri_strip_subject_info.cpp.o -o mri_strip_subject_info/mri_strip_subject_info utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1468/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_ribbon/CMakeFiles/mri_ribbon.dir/link.d mri_ribbon/CMakeFiles/mri_ribbon.dir/mri_ribbon.cpp.o -o mri_ribbon/mri_ribbon utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1469/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_rigid_register/CMakeFiles/mri_rigid_register.dir/link.d mri_rigid_register/CMakeFiles/mri_rigid_register.dir/mri_rigid_register.cpp.o -o mri_rigid_register/mri_rigid_register utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1470/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_segcentroids/CMakeFiles/mri_segcentroids.dir/link.d mri_segcentroids/CMakeFiles/mri_segcentroids.dir/mri_segcentroids.cpp.o -o mri_segcentroids/mri_segcentroids utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1471/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_sbbr/CMakeFiles/mri_sbbr.dir/link.d mri_sbbr/CMakeFiles/mri_sbbr.dir/mri_sbbr.cpp.o -o mri_sbbr/mri_sbbr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1472/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_seghead/CMakeFiles/mri_seghead.dir/link.d mri_seghead/CMakeFiles/mri_seghead.dir/mri_seghead.cpp.o -o mri_seghead/mri_seghead utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1473/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/link.d mri_strip_nonwhite/CMakeFiles/mri_strip_nonwhite.dir/mri_strip_nonwhite.cpp.o -o mri_strip_nonwhite/mri_strip_nonwhite utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1474/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_threshold/CMakeFiles/mri_threshold.dir/link.d mri_threshold/CMakeFiles/mri_threshold.dir/mri_threshold.cpp.o -o mri_threshold/mri_threshold utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1475/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_synthesize/CMakeFiles/mri_synthesize.dir/link.d mri_synthesize/CMakeFiles/mri_synthesize.dir/mri_synthesize.cpp.o -o mri_synthesize/mri_synthesize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1476/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_surfacemask/CMakeFiles/mri_surfacemask.dir/link.d mri_surfacemask/CMakeFiles/mri_surfacemask.dir/mri_surfacemask.cpp.o -o mri_surfacemask/mri_surfacemask utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1477/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/link.d mri_topologycorrection/CMakeFiles/mri_topologycorrection.dir/mri_topologycorrection.cpp.o -o mri_topologycorrection/mri_topologycorrection utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:673:16: warning: type ‘struct Cell’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1739:16: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:675:16: note: the first difference of corresponding definitions is field ‘next’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/realm.cpp:1740:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:755:16: warning: type ‘struct SEGMENTATION’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:144:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri_topology.cpp:757:7: note: the first difference of corresponding definitions is field ‘ncomponents’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.h:137:12: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1478/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_train/CMakeFiles/mri_train.dir/link.d mri_train/CMakeFiles/mri_train.dir/mri_train.cpp.o -o mri_train/mri_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1479/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_transform/CMakeFiles/mri_transform.dir/link.d mri_transform/CMakeFiles/mri_transform.dir/mri_transform.cpp.o -o mri_transform/mri_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1480/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_twoclass/CMakeFiles/mri_twoclass.dir/link.d mri_twoclass/CMakeFiles/mri_twoclass.dir/mri_twoclass.cpp.o -o mri_twoclass/mri_twoclass utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1481/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_volcluster/CMakeFiles/mri_volcluster.dir/link.d mri_volcluster/CMakeFiles/mri_volcluster.dir/mri_volcluster.cpp.o -o mri_volcluster/mri_volcluster utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1482/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_warp_convert/CMakeFiles/mri_warp_convert.dir/link.d mri_warp_convert/CMakeFiles/mri_warp_convert.dir/mri_warp_convert.cpp.o -o mri_warp_convert/mri_warp_convert utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1483/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_volcluster/CMakeFiles/mri_cluster.dir/link.d mri_volcluster/CMakeFiles/mri_cluster.dir/mri_cluster.cpp.o -o mri_volcluster/mri_cluster utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1484/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_volsynth/CMakeFiles/mri_volsynth.dir/link.d mri_volsynth/CMakeFiles/mri_volsynth.dir/mri_volsynth.cpp.o -o mri_volsynth/mri_volsynth utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1485/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_xvolavg/CMakeFiles/mri_xvolavg.dir/link.d mri_xvolavg/CMakeFiles/mri_xvolavg.dir/mri_xvolavg.cpp.o -o mri_xvolavg/mri_xvolavg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1486/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_wbc/CMakeFiles/mri_wbc.dir/link.d mri_wbc/CMakeFiles/mri_wbc.dir/mri_wbc.cpp.o -o mri_wbc/mri_wbc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1487/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mri_z2p/CMakeFiles/mri_z2p.dir/link.d mri_z2p/CMakeFiles/mri_z2p.dir/mri_z2p.cpp.o -o mri_z2p/mri_z2p utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘compute’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/tfce.cpp:276:34: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In member function ‘compute’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1488/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris2rgb/CMakeFiles/mris2rgb.dir/link.d mris2rgb/CMakeFiles/mris2rgb.dir/mris2rgb.cpp.o mris2rgb/CMakeFiles/mris2rgb.dir/oglutil.cpp.o mris2rgb/CMakeFiles/mris2rgb.dir/texfont.cpp.o -o mris2rgb/mris2rgb utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1489/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/link.d mris_annot_to_segmentation/CMakeFiles/mris_annot_to_segmentation.dir/mris_annot_to_segmentation.cpp.o -o mris_annot_to_segmentation/mris_annot_to_segmentation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1490/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_average_curvature/CMakeFiles/mris_average_curvature.dir/link.d mris_average_curvature/CMakeFiles/mris_average_curvature.dir/mris_average_curvature.cpp.o -o mris_average_curvature/mris_average_curvature utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1491/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_apply_reg/CMakeFiles/mris_apply_reg.dir/link.d mris_apply_reg/CMakeFiles/mris_apply_reg.dir/mris_apply_reg.cpp.o -o mris_apply_reg/mris_apply_reg utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1492/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_BA_segment/CMakeFiles/mris_BA_segment.dir/link.d mris_BA_segment/CMakeFiles/mris_BA_segment.dir/mris_BA_segment.cpp.o -o mris_BA_segment/mris_BA_segment utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1493/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/link.d mris_compute_acorr/CMakeFiles/mris_compute_acorr.dir/mris_compute_acorr.cpp.o -o mris_compute_acorr/mris_compute_acorr utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1494/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ca_train/CMakeFiles/mris_ca_train.dir/link.d mris_ca_train/CMakeFiles/mris_ca_train.dir/mris_ca_train.cpp.o -o mris_ca_train/mris_ca_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1495/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/link.d mris_compute_overlap/CMakeFiles/mris_compute_overlap.dir/mris_compute_overlap.cpp.o -o mris_compute_overlap/mris_compute_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1496/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/link.d mris_compute_parc_overlap/CMakeFiles/mris_compute_parc_overlap.dir/mris_compute_parc_overlap.cpp.o -o mris_compute_parc_overlap/mris_compute_parc_overlap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1497/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/link.d mris_compute_volume_fractions/CMakeFiles/mris_compute_volume_fractions.dir/mris_compute_volume_fractions.cpp.o -o mris_compute_volume_fractions/mris_compute_volume_fractions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1498/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_copy_header/CMakeFiles/mris_copy_header.dir/link.d mris_copy_header/CMakeFiles/mris_copy_header.dir/mris_copy_header.cpp.o -o mris_copy_header/mris_copy_header utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1499/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_congeal/CMakeFiles/mris_congeal.dir/link.d mris_congeal/CMakeFiles/mris_congeal.dir/mris_congeal.cpp.o -o mris_congeal/mris_congeal utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1500/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_deform/CMakeFiles/mris_deform.dir/link.d mris_deform/CMakeFiles/mris_deform.dir/mris_deform.cpp.o -o mris_deform/mris_deform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1501/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_distance_map/CMakeFiles/mris_distance_map.dir/link.d mris_distance_map/CMakeFiles/mris_distance_map.dir/mris_distance_map.cpp.o -o mris_distance_map/mris_distance_map utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1502/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_deform/CMakeFiles/mris_nudge.dir/link.d mris_deform/CMakeFiles/mris_nudge.dir/mris_nudge.cpp.o -o mris_deform/mris_nudge utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1503/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/link.d mris_distance_to_label/CMakeFiles/mris_distance_to_label.dir/mris_distance_to_label.cpp.o -o mris_distance_to_label/mris_distance_to_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1504/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_deform/CMakeFiles/mris_ca_deform.dir/link.d mris_deform/CMakeFiles/mris_ca_deform.dir/mris_ca_deform.cpp.o -o mris_deform/mris_ca_deform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1505/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_distance_transform/CMakeFiles/mris_distance_transform.dir/link.d mris_distance_transform/CMakeFiles/mris_distance_transform.dir/mris_distance_transform.cpp.o -o mris_distance_transform/mris_distance_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1506/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_entropy/CMakeFiles/mris_entropy.dir/link.d mris_entropy/CMakeFiles/mris_entropy.dir/mris_entropy.cpp.o -o mris_entropy/mris_entropy utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1507/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_errors/CMakeFiles/mris_errors.dir/link.d mris_errors/CMakeFiles/mris_errors.dir/mris_errors.cpp.o -o mris_errors/mris_errors utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1508/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_expand/CMakeFiles/mris_expand.dir/link.d mris_expand/CMakeFiles/mris_expand.dir/mris_expand.cpp.o -o mris_expand/mris_expand utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1509/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_extract_patches/CMakeFiles/mris_extract_patches.dir/link.d mris_extract_patches/CMakeFiles/mris_extract_patches.dir/mris_extract_patches.cpp.o -o mris_extract_patches/mris_extract_patches utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1510/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fill/CMakeFiles/mris_fill.dir/link.d mris_fill/CMakeFiles/mris_fill.dir/mris_fill.cpp.o -o mris_fill/mris_fill utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1511/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/link.d mris_find_flat_regions/CMakeFiles/mris_find_flat_regions.dir/mris_find_flat_regions.cpp.o -o mris_find_flat_regions/mris_find_flat_regions utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘MRISsegmentMarked’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp:98:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15073:24: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘MRISsegmentMarked’, inlined from ‘main’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_find_flat_regions/mris_find_flat_regions.cpp:98:22: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15074:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘main’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1512/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_fwhm/CMakeFiles/mris_fwhm.dir/link.d mris_fwhm/CMakeFiles/mris_fwhm.dir/mris_fwhm.cpp.o -o mris_fwhm/mris_fwhm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1513/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_flatten/CMakeFiles/mris_flatten.dir/link.d mris_flatten/CMakeFiles/mris_flatten.dir/mris_flatten.cpp.o -o mris_flatten/mris_flatten utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1514/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/link.d mris_hausdorff_dist/CMakeFiles/mris_hausdorff_dist.dir/mris_hausdorff_dist.cpp.o -o mris_hausdorff_dist/mris_hausdorff_dist utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1515/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/link.d mris_init_global_tractography/CMakeFiles/mris_init_global_tractography.dir/mris_init_global_tractography.cpp.o -o mris_init_global_tractography/mris_init_global_tractography utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1516/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/link.d mris_interpolate_warp/CMakeFiles/mris_interpolate_warp.dir/mris_interpolate_warp.cpp.o -o mris_interpolate_warp/mris_interpolate_warp utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1517/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label_area/CMakeFiles/mris_label_area.dir/link.d mris_label_area/CMakeFiles/mris_label_area.dir/mris_label_area.cpp.o -o mris_label_area/mris_label_area utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1518/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label_calc/CMakeFiles/mris_label_calc.dir/link.d mris_label_calc/CMakeFiles/mris_label_calc.dir/mris_label_calc.cpp.o -o mris_label_calc/mris_label_calc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1519/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_label_mode/CMakeFiles/mris_label_mode.dir/link.d mris_label_mode/CMakeFiles/mris_label_mode.dir/mris_label_mode.cpp.o -o mris_label_mode/mris_label_mode utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1520/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/link.d mris_make_average_surface/CMakeFiles/mris_make_average_surface.dir/mris_make_average_surface.cpp.o -o mris_make_average_surface/mris_make_average_surface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘sclustReMap’, inlined from ‘sclustMapSurfClusters’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:103:14, inlined from ‘mrisMarkIntersections’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_metricProperties.cpp:13052:42: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/surfcluster.cpp:653:30: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘mrisMarkIntersections’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1521/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/link.d mris_make_face_parcellation/CMakeFiles/mris_make_face_parcellation.dir/mris_make_face_parcellation.cpp.o -o mris_make_face_parcellation/mris_make_face_parcellation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1522/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_map_cuts/CMakeFiles/mris_map_cuts.dir/link.d mris_map_cuts/CMakeFiles/mris_map_cuts.dir/mris_map_cuts.cpp.o -o mris_map_cuts/mris_map_cuts utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1523/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_make_template/CMakeFiles/mris_make_template.dir/link.d mris_make_template/CMakeFiles/mris_make_template.dir/mris_make_template.cpp.o -o mris_make_template/mris_make_template utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1524/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/link.d mris_parcellate_connectivity/CMakeFiles/mris_parcellate_connectivity.dir/mris_parcellate_connectivity.cpp.o -o mris_parcellate_connectivity/mris_parcellate_connectivity utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1525/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/link.d mris_merge_parcellations/CMakeFiles/mris_merge_parcellations.dir/mris_merge_parcellations.cpp.o -o mris_merge_parcellations/mris_merge_parcellations utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1526/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_morph_stats/CMakeFiles/mris_morph_stats.dir/link.d mris_morph_stats/CMakeFiles/mris_morph_stats.dir/mris_morph_stats.cpp.o -o mris_morph_stats/mris_morph_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1527/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_ms_refine/CMakeFiles/mris_ms_refine.dir/link.d mris_ms_refine/CMakeFiles/mris_ms_refine.dir/mris_ms_refine.cpp.o -o mris_ms_refine/mris_ms_refine utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp:3237:1: warning: type ‘struct FLASH_LOOKUP_TABLE’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/flash.cpp:43:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/mris_ms_refine/mris_ms_refine.cpp:3235:10: note: the first difference of corresponding definitions is field ‘size’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/flash.cpp:41:10: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1528/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/link.d mris_multiscale_stats/CMakeFiles/mris_multiscale_stats.dir/mris_multiscale_stats.cpp.o -o mris_multiscale_stats/mris_multiscale_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1529/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/link.d mris_niters2fwhm/CMakeFiles/mris_niters2fwhm.dir/mris_niters2fwhm.cpp.o -o mris_niters2fwhm/mris_niters2fwhm utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1530/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--as-needed -Wl,--dependency-file=mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/link.d mris_mesh_subdivide/CMakeFiles/mris_mesh_subdivide.dir/mris_mesh_subdivide.cxx.o -o mris_mesh_subdivide/mris_mesh_subdivide utils/libutils.a /usr/lib64/libvtkWrappingTools.so.1 /usr/lib64/libvtkViewsQt.so.1 /usr/lib64/libvtkViewsInfovis.so.1 /usr/lib64/libvtkViewsContext2D.so.1 /usr/lib64/libvtkViewsCore.so.1 /usr/lib64/libvtkTestingRendering.so.1 /usr/lib64/libvtkTestingCore.so.1 /usr/lib64/libvtkRenderingVolumeAMR.so.1 /usr/lib64/libvtkRenderingQt.so.1 /usr/lib64/libvtkPythonContext2D.so.1 /usr/lib64/libvtkRenderingParallel.so.1 /usr/lib64/libvtkRenderingVRModels.so.1 /usr/lib64/libvtkRenderingMatplotlib.so.1 /usr/lib64/libvtkRenderingLabel.so.1 /usr/lib64/libvtkRenderingLOD.so.1 /usr/lib64/libvtkRenderingLICOpenGL2.so.1 /usr/lib64/libvtkRenderingImage.so.1 /usr/lib64/libvtkRenderingGridAxes.so.1 /usr/lib64/libvtkRenderingExternal.so.1 /usr/lib64/libvtkRenderingContextOpenGL2.so.1 /usr/lib64/libvtkRenderingCellGrid.so.1 /usr/lib64/libvtkRenderingVolumeOpenGL2.so.1 /usr/lib64/libvtkIOXdmf2.so.1 /usr/lib64/libvtkxdmf2.so.1 /usr/lib64/libvtkIOVeraOut.so.1 /usr/lib64/libvtkIOVPIC.so.1 /usr/lib64/libvtkvpic.so.1 /usr/lib64/libvtkIOTecplotTable.so.1 /usr/lib64/libvtkIOTRUCHAS.so.1 /usr/lib64/libvtkIOSegY.so.1 /usr/lib64/libvtkIOParallelXML.so.1 /usr/lib64/libvtkIOParallelLSDyna.so.1 /usr/lib64/libvtkIOParallelExodus.so.1 /usr/lib64/libvtkIOPLY.so.1 /usr/lib64/libvtkIOPIO.so.1 /usr/lib64/libvtkIOOggTheora.so.1 /usr/lib64/libvtkIOOMF.so.1 /usr/lib64/libvtkIONetCDF.so.1 /usr/lib64/libvtkIOMotionFX.so.1 /usr/lib64/libvtkIOParallel.so.1 /usr/lib64/libvtkIOMINC.so.1 /usr/lib64/libvtkIOLSDyna.so.1 /usr/lib64/libvtkIOLANLX3D.so.1 /usr/lib64/libvtkIOImport.so.1 /usr/lib64/libvtkIOIOSS.so.1 /usr/lib64/libvtkioss.so.1 /usr/lib64/libvtkIOHDF.so.1 /usr/lib64/libvtkIOH5part.so.1 /usr/lib64/libvtkh5hut.so.1 /usr/lib64/libvtkIOH5Rage.so.1 /usr/lib64/libvtkIOFLUENTCFF.so.1 /usr/lib64/libvtkIOVideo.so.1 /usr/lib64/libvtkIOMovie.so.1 /usr/lib64/libvtkIOFDS.so.1 /usr/lib64/libvtkIOInfovis.so.1 /usr/lib64/libvtkIOExportPDF.so.1 /usr/lib64/libvtkIOExportGL2PS.so.1 /usr/lib64/libvtkRenderingGL2PSOpenGL2.so.1 /usr/lib64/libvtkgl2ps.so.1 /usr/lib64/libvtkIOExodus.so.1 /usr/lib64/libvtkIOEngys.so.1 /usr/lib64/libvtkIOEnSight.so.1 /usr/lib64/libvtkIOERF.so.1 /usr/lib64/libvtkIOCityGML.so.1 /usr/lib64/libvtkIOChemistry.so.1 /usr/lib64/libvtkIOCesium3DTiles.so.1 /usr/lib64/libvtkIOCONVERGECFD.so.1 /usr/lib64/libvtkIOCGNSReader.so.1 /usr/lib64/libvtkIOAvmesh.so.1 /usr/lib64/libvtkIOAsynchronous.so.1 /usr/lib64/libvtkIOExport.so.1 /usr/lib64/libvtkRenderingVtkJS.so.1 /usr/lib64/libvtkIOGeometry.so.1 /usr/lib64/libvtkRenderingSceneGraph.so.1 /usr/lib64/libvtkIOAMR.so.1 /usr/lib64/libvtkInteractionImage.so.1 /usr/lib64/libvtkInfovisLayout.so.1 /usr/lib64/libvtkImagingStencil.so.1 /usr/lib64/libvtkImagingStatistics.so.1 /usr/lib64/libvtkImagingOpenGL2.so.1 /usr/lib64/libvtkImagingMorphological.so.1 /usr/lib64/libvtkImagingMath.so.1 /usr/lib64/libvtkImagingFourier.so.1 /usr/lib64/libvtkGUISupportQtSQL.so.1 /usr/lib64/libvtkIOSQL.so.1 /usr/lib64/libvtkGUISupportQtQuick.so.1 /usr/lib64/libvtkGUISupportQt.so.1 /usr/lib64/libvtkInteractionWidgets.so.1 /usr/lib64/libvtkRenderingVolume.so.1 /usr/lib64/libvtkRenderingAnnotation.so.1 /usr/lib64/libvtkInteractionStyle.so.1 /usr/lib64/libvtkImagingHybrid.so.1 /usr/lib64/libvtkImagingColor.so.1 /usr/lib64/libvtkGeovisCore.so.1 /usr/lib64/libvtkFiltersTopology.so.1 /usr/lib64/libvtkFiltersTensor.so.1 /usr/lib64/libvtkFiltersSelection.so.1 /usr/lib64/libvtkFiltersSMP.so.1 /usr/lib64/libvtkFiltersPython.so.1 /usr/lib64/libvtkFiltersProgrammable.so.1 /usr/lib64/libvtkFiltersPoints.so.1 /usr/lib64/libvtkFiltersParallelVerdict.so.1 /usr/lib64/libvtkFiltersParallelStatistics.so.1 /usr/lib64/libvtkFiltersParallelImaging.so.1 /usr/lib64/libvtkFiltersParallelDIY2.so.1 /usr/lib64/libvtkFiltersTemporal.so.1 /usr/lib64/libvtkFiltersImaging.so.1 /usr/lib64/libvtkImagingGeneral.so.1 /usr/lib64/libvtkFiltersGeometryPreview.so.1 /usr/lib64/libvtkFiltersGeneric.so.1 /usr/lib64/libvtkFiltersFlowPaths.so.1 /usr/lib64/libvtkFiltersAMR.so.1 /usr/lib64/libvtkFiltersParallel.so.1 /usr/lib64/libvtkFiltersTexture.so.1 /usr/lib64/libvtkFiltersModeling.so.1 /usr/lib64/libvtkDomainsChemistryOpenGL2.so.1 /usr/lib64/libvtkRenderingOpenGL2.so.1 /usr/lib64/libvtkRenderingHyperTreeGrid.so.1 /usr/lib64/libvtkRenderingUI.so.1 /usr/lib64/libvtkFiltersHybrid.so.1 /usr/lib64/libvtkDomainsChemistry.so.1 /usr/lib64/libvtkCommonPython.so.1 /usr/lib64/libvtkChartsCore.so.1 /usr/lib64/libvtkInfovisCore.so.1 /usr/lib64/libvtkFiltersExtraction.so.1 /usr/lib64/libvtkParallelDIY.so.1 /usr/lib64/libvtkIOXML.so.1 /usr/lib64/libvtkIOXMLParser.so.1 /usr/lib64/libvtkParallelCore.so.1 /usr/lib64/libvtkIOLegacy.so.1 /usr/lib64/libvtkIOCellGrid.so.1 /usr/lib64/libvtkFiltersCellGrid.so.1 /usr/lib64/libvtkFiltersStatistics.so.1 /usr/lib64/libvtkFiltersHyperTree.so.1 /usr/lib64/libvtkImagingSources.so.1 /usr/lib64/libvtkIOImage.so.1 /usr/lib64/libvtkDICOMParser.so.1 /usr/lib64/libvtkmetaio.so.1 /usr/lib64/libvtkIOCore.so.1 /usr/lib64/libvtkRenderingContext2D.so.1 /usr/lib64/libvtkRenderingFreeType.so.1 /usr/lib64/libvtkRenderingCore.so.1 /usr/lib64/libvtkFiltersSources.so.1 /usr/lib64/libvtkImagingCore.so.1 /usr/lib64/libvtkFiltersGeneral.so.1 /usr/lib64/libvtkFiltersVerdict.so.1 /usr/lib64/libvtkverdict.so.1 /usr/lib64/libvtkFiltersGeometry.so.1 /usr/lib64/libvtkCommonComputationalGeometry.so.1 /usr/lib64/libvtkFiltersCore.so.1 /usr/lib64/libvtkFiltersReduction.so.1 /usr/lib64/libvtkCommonExecutionModel.so.1 packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff /usr/lib64/libvtkPythonInterpreter.so.1 /usr/lib64/libxml2.so /usr/lib64/libtheora.so /usr/lib64/libtheoraenc.so /usr/lib64/libogg.so /usr/lib64/libtheoradec.so /usr/lib64/libvtkexodusII.so.1 /usr/lib64/libnetcdf.so.22 /usr/lib64/libhpdf.so /usr/lib64/libpng.so /usr/lib64/libz.so /usr/lib64/libjsoncpp.so /usr/lib64/libpugixml.so.1.15 /usr/lib64/libvtkcgns.so.1 /usr/lib64/libhdf5.so.320.1.1 /usr/lib64/libhdf5_hl.so.320.0.2 /usr/lib64/libQt6Sql.so.6.11.1 /usr/lib64/libsqlite3.so /usr/lib64/libQt6OpenGLWidgets.so.6.11.1 /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Quick.so.6.11.1 /usr/lib64/libQt6OpenGL.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Qml.so.6.11.1 /usr/lib64/libQt6Network.so.6.11.1 /usr/lib64/libQt6Core.so.6.11.1 /usr/lib64/libproj.so /usr/lib64/libvtkglad.so.1 /usr/lib64/libvtkx11.so.1 /usr/lib64/libfreetype.so /usr/lib64/libvtkCommonColor.so.1 /usr/lib64/libvtkCommonDataModel.so.1 /usr/lib64/libvtkCommonSystem.so.1 /usr/lib64/libvtkCommonMisc.so.1 /usr/lib64/libvtkCommonTransforms.so.1 /usr/lib64/libvtkCommonMath.so.1 /usr/lib64/libvtkkissfft.so.1 /usr/lib64/libvtkWrappingPythonCore3.14.so.1 /usr/lib64/libpython3.14.so /usr/lib64/libvtkCommonCore.so.1 /usr/lib64/libvtksys.so.1 -ldl /usr/lib64/libvtkloguru.so.1 /usr/lib64/libfmt.so.11.2.0 /usr/lib64/libvtktoken.so.1 /usr/lib64/libvtkscn.so.1 /usr/lib64/libexpat.so /usr/lib64/libjpeg.so /usr/lib64/libtiff.so /usr/lib64/liblz4.so /usr/lib64/liblzma.so -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1531/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register_label_map/CMakeFiles/mris_register_label_map.dir/link.d mris_register_label_map/CMakeFiles/mris_register_label_map.dir/mris_register_label_map.cpp.o -o mris_register_label_map/mris_register_label_map utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1532/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_pmake/CMakeFiles/mris_pmake.dir/link.d mris_pmake/CMakeFiles/mris_pmake.dir/abs2rel.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/asynch.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_label.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmOverlay.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/C_mpmProg.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_SMessage.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_SSocket.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_surface.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/c_vertex.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/dijkstra.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/env.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/general.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/help.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/legacy.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/mris_pmake.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/oclDijkstraKernel.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/rel2abs.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/scanopt.cpp.o mris_pmake/CMakeFiles/mris_pmake.dir/surface.cpp.o -o mris_pmake/mris_pmake utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1533/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/link.d mris_register_to_volume/CMakeFiles/mris_register_to_volume.dir/mris_register_to_volume.cpp.o -o mris_register_to_volume/mris_register_to_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1534/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/link.d mris_register_to_volume/CMakeFiles/mris_register_to_label.dir/mris_register_to_label.cpp.o -o mris_register_to_volume/mris_register_to_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1535/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_remove_variance/CMakeFiles/mris_remove_variance.dir/link.d mris_remove_variance/CMakeFiles/mris_remove_variance.dir/mris_remove_variance.cpp.o -o mris_remove_variance/mris_remove_variance utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1536/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rescale/CMakeFiles/mris_rescale.dir/link.d mris_rescale/CMakeFiles/mris_rescale.dir/mris_rescale.cpp.o -o mris_rescale/mris_rescale utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1537/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_remesh/CMakeFiles/mris_remesh.dir/link.d mris_remesh/CMakeFiles/mris_remesh.dir/mris_remesh.cpp.o mris_remesh/CMakeFiles/mris_remesh.dir/remesher.cpp.o -o mris_remesh/mris_remesh utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1538/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/link.d mris_reposition_surface/CMakeFiles/mris_reposition_surface.dir/mris_reposition_surface.cpp.o -o mris_reposition_surface/mris_reposition_surface utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1539/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rf_label/CMakeFiles/mris_rf_label.dir/link.d mris_rf_label/CMakeFiles/mris_rf_label.dir/mris_rf_label.cpp.o -o mris_rf_label/mris_rf_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1540/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_reverse/CMakeFiles/mris_reverse.dir/link.d mris_reverse/CMakeFiles/mris_reverse.dir/mris_reverse.cpp.o -o mris_reverse/mris_reverse utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1541/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rotate/CMakeFiles/mris_rotate.dir/link.d mris_rotate/CMakeFiles/mris_rotate.dir/mris_rotate.cpp.o -o mris_rotate/mris_rotate utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1542/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_rf_train/CMakeFiles/mris_rf_train.dir/link.d mris_rf_train/CMakeFiles/mris_rf_train.dir/mris_rf_train.cpp.o -o mris_rf_train/mris_rf_train utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1543/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sample_label/CMakeFiles/mris_sample_label.dir/link.d mris_sample_label/CMakeFiles/mris_sample_label.dir/mris_sample_label.cpp.o -o mris_sample_label/mris_sample_label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1544/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_sample_parc/CMakeFiles/mris_sample_parc.dir/link.d mris_sample_parc/CMakeFiles/mris_sample_parc.dir/mris_sample_parc.cpp.o -o mris_sample_parc/mris_sample_parc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp: In function ‘MRISsegmentAnnotated.isra’: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mrisurf_defect.cpp:15197:33: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1545/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_seg2annot/CMakeFiles/mris_seg2annot.dir/link.d mris_seg2annot/CMakeFiles/mris_seg2annot.dir/mris_seg2annot.cpp.o -o mris_seg2annot/mris_seg2annot utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1546/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_segment/CMakeFiles/mris_segment.dir/link.d mris_segment/CMakeFiles/mris_segment.dir/mris_segment.cpp.o -o mris_segment/mris_segment utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1547/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_segment_vals/CMakeFiles/mris_segment_vals.dir/link.d mris_segment_vals/CMakeFiles/mris_segment_vals.dir/mris_segment_vals.cpp.o -o mris_segment_vals/mris_segment_vals utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1548/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/link.d mris_segmentation_stats/CMakeFiles/mris_segmentation_stats.dir/mris_segmentation_stats.cpp.o -o mris_segmentation_stats/mris_segmentation_stats utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1549/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/link.d mris_shrinkwrap/CMakeFiles/mris_shrinkwrap.dir/mris_shrinkwrap.cpp.o -o mris_shrinkwrap/mris_shrinkwrap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1550/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/link.d mris_shrinkwrap/CMakeFiles/mris_AA_shrinkwrap.dir/mris_AA_shrinkwrap.cpp.o -o mris_shrinkwrap/mris_AA_shrinkwrap utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1551/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/link.d mris_smooth_intracortical/CMakeFiles/mris_smooth_intracortical.dir/mris_smooth_intracortical.cpp.o -o mris_smooth_intracortical/mris_smooth_intracortical utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1552/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/link.d mris_simulate_atrophy/CMakeFiles/mris_simulate_atrophy.dir/mris_simulate_atrophy.cpp.o -o mris_simulate_atrophy/mris_simulate_atrophy utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1553/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_spherical_average/CMakeFiles/mris_spherical_average.dir/link.d mris_spherical_average/CMakeFiles/mris_spherical_average.dir/mris_spherical_average.cpp.o -o mris_spherical_average/mris_spherical_average utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1554/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_spintest/CMakeFiles/mris_spintest.dir/link.d mris_spintest/CMakeFiles/mris_spintest.dir/mris_spintest.cpp.o -o mris_spintest/mris_spintest utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1555/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_talairach/CMakeFiles/mris_talairach.dir/link.d mris_talairach/CMakeFiles/mris_talairach.dir/mris_talairach.cpp.o -o mris_talairach/mris_talairach utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1556/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/link.d mris_surface_to_vol_distances/CMakeFiles/mris_surface_to_vol_distances.dir/mris_surface_to_vol_distances.cpp.o -o mris_surface_to_vol_distances/mris_surface_to_vol_distances utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1557/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/link.d mris_thickness_comparison/CMakeFiles/mris_thickness_comparison.dir/mris_thickness_comparison.cpp.o -o mris_thickness_comparison/mris_thickness_comparison utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1558/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_transform/CMakeFiles/mris_transform.dir/link.d mris_transform/CMakeFiles/mris_transform.dir/mris_transform.cpp.o -o mris_transform/mris_transform utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1559/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=nmovie_qt/CMakeFiles/nmovie_qt.dir/link.d nmovie_qt/CMakeFiles/nmovie_qt.dir/nmovie_qt_autogen/mocs_compilation.cpp.o nmovie_qt/CMakeFiles/nmovie_qt.dir/main.cpp.o nmovie_qt/CMakeFiles/nmovie_qt.dir/MainWindow.cpp.o nmovie_qt/CMakeFiles/nmovie_qt.dir/RenderWidget.cpp.o -o nmovie_qt/nmovie_qt /usr/lib64/libQt6Widgets.so.6.11.1 /usr/lib64/libQt6Gui.so.6.11.1 /usr/lib64/libGL.so /usr/lib64/libQt6Core.so.6.11.1 && : [1560/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/link.d mris_translate_annotation/CMakeFiles/mris_translate_annotation.dir/mris_translate_annotation.cpp.o -o mris_translate_annotation/mris_translate_annotation utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1561/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/link.d mris_transmantle_dysplasia_paths/CMakeFiles/mris_transmantle_dysplasia_paths.dir/mris_transmantle_dysplasia_paths.cpp.o -o mris_transmantle_dysplasia_paths/mris_transmantle_dysplasia_paths utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1562/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volume/CMakeFiles/mris_volume.dir/link.d mris_volume/CMakeFiles/mris_volume.dir/mris_volume.cpp.o -o mris_volume/mris_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1563/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=optseq2/CMakeFiles/optseq2.dir/link.d optseq2/CMakeFiles/optseq2.dir/optseq2.cpp.o -o optseq2/optseq2 utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1564/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=spline3/CMakeFiles/Spline3_test.dir/link.d spline3/CMakeFiles/Spline3_test.dir/Spline3_test.cpp.o -o spline3/Spline3_test && : [1565/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=stim_polar/CMakeFiles/stim_polar.dir/link.d stim_polar/CMakeFiles/stim_polar.dir/stim_polar.cpp.o -o stim_polar/stim_polar utils/libutils.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libSM.so /usr/lib64/libICE.so /usr/lib64/libX11.so /usr/lib64/libXext.so packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : [1566/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_volume/CMakeFiles/mris_wm_volume.dir/link.d mris_volume/CMakeFiles/mris_wm_volume.dir/mris_wm_volume.cpp.o -o mris_volume/mris_wm_volume utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1567/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=qdec_glmfit/CMakeFiles/qdec_glmfit.dir/link.d qdec_glmfit/CMakeFiles/qdec_glmfit.dir/qdec_glmfit.cxx.o -o qdec_glmfit/qdec_glmfit qdecproject/libqdecproject.a utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1568/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=template/CMakeFiles/template.dir/link.d template/CMakeFiles/template.dir/template.cpp.o -o template/template utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : [1569/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_watershed/CMakeFiles/mris_watershed.dir/link.d mris_watershed/CMakeFiles/mris_watershed.dir/mris_watershed.cpp.o -o mris_watershed/mris_watershed utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1570/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mris_warp/CMakeFiles/mris_warp.dir/link.d mris_warp/CMakeFiles/mris_warp.dir/mris_warp.cpp.o -o mris_warp/mris_warp utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1571/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=unittests/CMakeFiles/testchklc.dir/link.d unittests/CMakeFiles/testchklc.dir/testchklc.cpp.o -o unittests/testchklc utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : [1572/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=tridec/CMakeFiles/tridec.dir/link.d tridec/CMakeFiles/tridec.dir/tridec.cpp.o -o tridec/tridec utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here [1573/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=mrisp_write/CMakeFiles/mrisp_write.dir/link.d mrisp_write/CMakeFiles/mrisp_write.dir/mrisp_write.cpp.o -o mrisp_write/mrisp_write utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1574/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/link.d oct_register_mosaic/CMakeFiles/oct_register_mosaic.dir/oct_register_mosaic.cpp.o -o oct_register_mosaic/oct_register_mosaic utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/stdlib.h: In function ‘AEactivateLayer.isra’: /usr/include/stdlib.h:679:14: note: in a call to allocation function ‘calloc’ declared here [1575/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=swi_processing/CMakeFiles/swi_preprocess.dir/link.d swi_processing/CMakeFiles/swi_preprocess.dir/swi_preprocess.cpp.o swi_processing/CMakeFiles/swi_preprocess.dir/cmd_line_interface.cpp.o -o swi_processing/swi_preprocess utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1576/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=stat_normalize/CMakeFiles/stat_normalize.dir/link.d stat_normalize/CMakeFiles/stat_normalize.dir/stat_normalize.cpp.o -o stat_normalize/stat_normalize utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: the first difference of corresponding definitions is field ‘vsrc’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:137:14: warning: ‘stats_talxfm’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:132:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/include/stats.h:132:13: note: ‘stats_talxfm’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1577/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=swi_processing/CMakeFiles/swi_process.dir/link.d swi_processing/CMakeFiles/swi_process.dir/swi_process.cpp.o swi_processing/CMakeFiles/swi_process.dir/cmd_line_interface.cpp.o -o swi_processing/swi_process utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1578/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=test_makevol/CMakeFiles/makevol.dir/link.d test_makevol/CMakeFiles/makevol.dir/main.cpp.o -o test_makevol/makevol utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1579/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=ventfix/CMakeFiles/ventfix.dir/link.d ventfix/CMakeFiles/ventfix.dir/ventfix_main.cpp.o -o ventfix/ventfix utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here [1580/1580] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=c++17 -Wno-error -include cstdint -include iostream -fpermissive -fopenmp -Wno-unused-but-set-variable -fPIC -fdata-sections -ffunction-sections -Wl,--gc-sections -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fdata-sections -ffunction-sections -Wl,--gc-sections -Wl,-Map,ld_map.txt -Wl,--no-demangle -Wl,--dependency-file=pointset2label/CMakeFiles/pointset2label.dir/link.d pointset2label/CMakeFiles/pointset2label.dir/pointset2label.cpp.o -o pointset2label/pointset2label utils/libutils.a packages/jpeg/libjpeg.a -lxml2 packages/minc/libminc.a packages/netcdf/libnetcdf.a packages/nrrdio/libnrrdio.a packages/dicom/libdicom.a packages/cephes/libcephes.a packages/nifti/libnifti.a packages/dcm2niix/libdcm2niixfs.a -lgiftiio -lexpat /usr/lib64/libz.so /usr/lib64/libitkvnl_algo-5.4.so.1 /usr/lib64/libitkvnl-5.4.so.1 /usr/lib64/libitkv3p_netlib-5.4.so.1 /usr/lib64/libitkvcl-5.4.so.1 -lm /usr/lib/gcc/x86_64-redhat-linux/16/libgomp.so /usr/lib64/libpthread.a -lcrypt -lrt -ltiff -lgcc_s_asneeded -lgcc_s_asneeded && : /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16439:3: warning: type ‘struct SORT_VOXEL’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:174:3: note: a different type is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mri.cpp:16438:17: note: the first difference of corresponding definitions is field ‘x’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/voxlist.cpp:172:9: note: a field with different name is defined in another translation unit /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/mriset.cpp:3419:14: warning: ‘cma_label_to_name’ violates the C++ One Definition Rule [-Wodr] /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: return value type mismatch /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: type ‘const char’ should match type ‘char’ /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/gca.cpp:9156:13: note: ‘cma_label_to_name’ was previously declared here In function ‘compute_permutation’, inlined from ‘AEactivateLayer.isra’ at /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/autoencoder.cpp:318:43: /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/utils/utils.cpp:1561:39: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] /usr/include/malloc.h: In function ‘AEactivateLayer.isra’: /usr/include/malloc.h:43:14: note: in a call to allocation function ‘calloc’ declared here + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Hmib6s + umask 022 + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + '[' /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/freesurfer8-8.2.0-build + mkdir /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + rm -f redhat-linux-build/distribution/average/cmake_install.cmake + touch redhat-linux-build/distribution/average/cmake_install.cmake + echo '' ++ echo redhat-linux-build + python3 -c $'\nimport os, re\nfor root, dirs, files in os.walk(\'redhat-linux-build\'):\n for fn in files:\n if fn == \'cmake_install.cmake\':\n path = os.path.join(root, fn)\n txt = open(path).read()\n if re.search(r\'fspython|pip install|python3\\.8|Could not install|Could not extract|install_directories|install_symlinks_fspython\', txt):\n open(path, \'w\').write(\'# Cleared for RPM build\\n\')\n' + find redhat-linux-build -name cmake_install.cmake -exec sed -i '/file(MAKE_DIRECTORY\|configure_file\|execute_process\|message(STATUS/s|/usr/lib/freesurfer-8.2.0|$ENV{DESTDIR}/usr/lib/freesurfer-8.2.0|g' '{}' + + DESTDIR=/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "Release" -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./ASegStatsLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./DefectLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./FreeSurferColorLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./SegmentNoLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./Simple_surface_labels2005.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./Simple_surface_labels2009.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./SubCorticalMassLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./tkmeditParcColorsCMA -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./WMParcStatsLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/FreeSurferColorLUT.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/ReducedLabels24.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/ReducedLabels35.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/ReducedLabels5.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/ReducedLabels4.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/compressed_lut.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/luts/nonlat.txt -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./FreeSurferEnv.csh -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./FreeSurferEnv.sh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./SetUpFreeSurfer.csh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./SetUpFreeSurfer.sh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./sources.csh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/./sources.sh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic0.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic1.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic2.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic3.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic4.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic5.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic6.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/ic7.tri -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/inner_skull.dat -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/outer_skin.dat -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/bem/outer_skull.dat -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/sessions/README -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license-trimesh-python.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.anaconda-miniconda-python.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.ants.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.apache.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.argparse.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.blt.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.boost.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.certifi-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.charls.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.cortechs.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.dcm2niix.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.dcmtk.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.expat.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.fib.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.fireants -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.freesurfer_SLA.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.freetype2-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.fsl.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.gifti.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.glut.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.itk.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.jpeg.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.json.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.lapack.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.loguru.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.minc.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.netcdf.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.nifti.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.niftyreg.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.nrrdio.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.opencv-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.opencv-python.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.petsc.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.pybind.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.qt.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.swig.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.tcltk.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.tensorflow-python-3rd-party.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.tetgen.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.thrust.txt -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/license.tiff.txt -- Installing: 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Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/talsegprob -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/test_recon-all.csh -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/test_tutorials.sh -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/thickdiffmap -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/tkmeditfv -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/tkregisterfv -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/tksurferfv -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/topofit -- Configuring: 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Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/xcorr -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/xfmrot -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/xhemi-tal -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/xhemireg -- Configuring: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/xsanatreg -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/long_submit_jobs -- Configuring python wrapper: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/long_submit_jobs -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/long_qdec_table -- Configuring python wrapper: 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Configuring python wrapper: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/merge_stats_tables -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/fspalm -- Configuring python wrapper: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/fspalm -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/rca-config -- Configuring python wrapper: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/rca-config -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/rca-config2csh -- Configuring python wrapper: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/rca-config2csh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/slicedelay 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Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/install_nnUNet_v1.7_instructions.md -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/fs_spmreg.glnxa64 -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/irepifitvol.glnx64 -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/tcl/allisons_surfaces.tcl -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/tcl/curv-flat.tcl -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/tcl/curv-views.tcl -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/tcl/dara_data.tcl -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/lib/tcl/dipmovie-flat.tcl -- Installing: 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Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/zero_lt_4dfp -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/ifh2hdr -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/gauss_4dfp -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/imgreg_4dfp -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/t4imgs_4dfp -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/compute_vox2vox -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/docs/xml/talairach_avi.help.xml -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/3T18yoSchwartzReactN32_as_orig.4dfp.hdr -- Installing: 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Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2B_as_mni_average_305_mask.4dfp.img -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2B_as_mni_average_305_mask.4dfp.img.rec -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2C_as_mni_average_305.4dfp.hdr -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2C_as_mni_average_305.4dfp.ifh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2C_as_mni_average_305.4dfp.img -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2C_as_mni_average_305.4dfp.img.rec -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2C_as_mni_average_305.4dfp.mat -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2B_as_mni_average_305.4dfp.hdr -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2B_as_mni_average_305.4dfp.ifh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2B_as_mni_average_305.4dfp.img -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/711-2B_as_mni_average_305.4dfp.img.rec -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/mni_average_305.4dfp.hdr -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/mni_average_305.4dfp.ifh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/average/mni_average_305.4dfp.img -- Installing: 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Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/seg_metrics.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/se.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/predictor.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/model.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/metrics.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/losses.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/config.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/buildingblocks.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/unet3d/__init__.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/packages/WMHSynthSeg/inference.py -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_xvolavg -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_z2p -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris2rgb -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris_annot_to_segmentation -- Installing: 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/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/recon-all-clinical.sh -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/python/scripts/mri_segment_thalamic_nuclei_dti_cnn -- Configuring python wrapper: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_segment_thalamic_nuclei_dti_cnn -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/models/thalseg_1.0.h5 -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/models/thalseg_1.1.h5 -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/models/thalseg_segmentation_labels_1.0.npy -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/models/thalseg_segmentation_names_1.0.npy -- Installing: /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/models/thalseg_topological_classes_1.0.npy + find /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0 -type f -exec sed -i '1s|^#!/usr/bin/env python$|#!/usr/bin/python3|' '{}' + + install -d /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0 + ln -sf /etc/freesurfer/license.txt /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/license.txt + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib/freesurfer-8.2.0/SetUpFreeSurfer.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/SetUpFreeSurfer.sh from /bin/bash -p to #!/usr/bin/bash -p mangling shebang in /usr/lib/freesurfer-8.2.0/sources.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/sources.sh from /bin/bash -p to #!/usr/bin/bash -p mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/acfseg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/acorfunc-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/addmcparams from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/aseg2funcmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/autoreg-fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/autoreg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/avgraw from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/bfileconvert from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/bfvcheck from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/bgmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cat-bvolume from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/checkmincdir from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/check-sliceres-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/clusterspec2mask from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cluster-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cmpanalyses-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cmpsesssnr-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cmpsnr-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/compress-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/concat-bvolumes from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/conmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cordiff from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/countncond from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/cp-bvolume from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/df-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/diag-fmri from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/diag-optseq from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/difffsfast from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/du-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/evfunc from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/evfunc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/evpve-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/evspatfil from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/evspatfil-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fast_getext from /bin/csh -f to #!/usr/bin/csh -f *** WARNING: ./usr/lib/freesurfer-8.2.0/fsfast/bin/fast-log-preamble.csh is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fcseed-config from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fcseedcor from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fcseed-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fcreg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/feat.fsfast-patch from /bin/sh to #!/usr/bin/sh *** WARNING: ./usr/lib/freesurfer-8.2.0/fsfast/bin/feat.fsfast-patch.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fieldsign-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fixseqinfo-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/flacproc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsfast-version from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsfast-gui-bug from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsfeat from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsfeatffx from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsfeat-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsf-glmfit from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsf-kmnacf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsf-kmracf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fslregister-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fsl2par from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/func2acf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/func2label from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/funcroi-config from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/funcroi-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/funcroi-table-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/functcvm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/functcvm-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/functwf-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fwhmest from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/fwhmest-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getana from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getbext from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getbfvdim from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getendian from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getfirstrundir-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getfirstsliceno from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getformat_from_stem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/geticoorder from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getlastsliceno from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getmatlab from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getncols from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getnconds from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getnframes from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getnrows from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getnslices from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getpwdcmd from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getrunlist from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getsesspath from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getsliceno from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getslicestr from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getspacetype from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/getstem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/gettalres from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/ghostdet from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/ghostdet-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/glmest from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/glmfourier from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/glmfourier-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/glmstats from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/groupreg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/ipfsl from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isargflag from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isroiavg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-fe from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-fe-abb-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-fe-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-fe-sess-1.3 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-re from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-re-abb-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxavg-re-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxconcat0-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/isxconcat-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/kmacfcond-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/kmacf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/kmacfwht-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/lrst-blk from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/lrst-blk-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mc-afni from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mc-afni2 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mcdat2mcextreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mcparams2extreg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/meanimg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkanalysis-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkblockpar from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkbrainmask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkbrainmask-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkcmanova-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkcontrast from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkcontrast2 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkcontrast-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkdesignmtx from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkdesmtx-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkfeat-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkfieldsign from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkmosaic from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkprestimcon from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mktalreg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mktalxfm-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mktemplate-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mkvoxshiftmap from /bin/csh -fx to #!/usr/bin/csh -fx mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/mris_glm-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/optseq from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/optseq.matlab from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/par2fsl3 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/par2kspar from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/par2stf from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/parse-measasc from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/plot-pve from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/plot-twf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/preproc-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/prmerge-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/qmedit from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/qsurfer from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/rawavg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/rawfunc2surf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/rawfunc2tal from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/rawfunc2tal-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/reg2subj from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/register-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/rocview from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/roiavg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/roiavgraw from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/roitxt2tbl from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/roixrunsum-sess from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/selxavg2 from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/selxavg3-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/selxavg-jk-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/selxavg-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/selxavg-sess-perrun from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/seqefficiency from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/sliceview-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/spatialsmooth-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/spikedet from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/spikedet-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/splitstr from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/spmimg2bvolume from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/spmregister-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/stc.fsl from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/stc-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/stem2fmt from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/stripsessargs from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/subject-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/surf-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/surfsmooth-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/sxacfg-get from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/synthrawroi from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/synth-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/synthstudy from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/tar-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/tkmedit-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/tkregister-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/tksurfer-sess from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/fsfast/bin/vlrmerge from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer-8.2.0/python/packages/nnUNet_v2/process_directory_no_upsample.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer-8.2.0/python/scripts/claustrum-seg.py is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/bin/samseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/samseg-long from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/computeTissueConcentrations from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gems_compute_atlas_probs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/merge_add_mesh_alphas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/prepareAtlasDirectory from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_samseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_samseg_long from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/sbtiv from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subregions from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/annot2std from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/annot2volseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/aparc2feat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/aparc_stats_aseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/aparcstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/apas2aseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/aseg2feat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/asegstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/avi2talxfm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/bblabel from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/bbmask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/bedpostx_mgh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/beta2sxa from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/biasfield from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/bmedits2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/browse-minc-header.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/bugr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/build_desikan_killiany_gcs.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/cblumwmgyri from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/check_recons.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/check_subject from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/lib/freesurfer-8.2.0/bin/checkMCR.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/clear_fs_env.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/compute_interrater_variability.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/compute_label_vals.csh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/compute_label_volumes.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/conf2hires from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/cor_to_minc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/cp-dicom from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/create_nnUNet_v1.7_env.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/csvprint from /usr/bin/env python3 to #!/usr/bin/python3 mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dcmdir-info-mgh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dcmsplit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dcmunpack from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/deface_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/defect2seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/defect-seg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dicom-rename from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dmri_bset from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/dmrirc.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/dmrirc.long.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/dmrirc.long.multiscan.example is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/dmrirc.multiscan.example is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dt_recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/epidewarp.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/extract_seg_waveform from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/exvivo-hemi-proc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/feat2segstats from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/feat2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/findsession from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fix_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fix_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fix_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fix_subject_corrected from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fix_subject_corrected-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fix_subject_corrected-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fixup_mni_paths from /bin/tcsh to #!/usr/bin/tcsh *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/flirt.newdefault.20080811.sch is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fname2ext from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fname2stem from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/freesurfer from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsfirst.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs-check-version from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs-check-os from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs-eddy from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_install_mcr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_install_cuda from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_lib_check from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_run_from_mcr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_time from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs-topup from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_tutorial_data from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fs_update from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fscalc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fscalc.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsdcmdecompress from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsfget from /usr/bin/env tclsh to #!/usr/bin/tclsh *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/fsl.5.0.2.xyztrans.sch is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsl_rigid_register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsl_sub_mgh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fslregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsr-coreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsr-checkxopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsr-getxopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsr-mergexopts from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsr-longpreproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsr-import from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsvglrun from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsxvfb from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fvcompare from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gca-apply from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gcainit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gcaprepone from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gcatrain from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gcatrainskull from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/get_label_thickness from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/getfullpath from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/grad_unwarp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/groupstats from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/groupstatsdiff from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gtmseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/gtmstats2table from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/help_xml_validate from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject3 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject_new from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject_new-lh from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject_new-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/inflate_subject_sc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/irepifitvol from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/is-surface from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/isanalyze from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/IsLTA from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/isnifti from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/isolate_labels.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/isolate_labels_keeporigval.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/jkgcatrain from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/josareg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label-cortex from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_child from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_elderly_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_subject_flash from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/labels_disjoint from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/labels_intersect from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/labels_union from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/listsubj from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_create_base_sigma from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_create_orig from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/longmc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/lpcregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make-segvol-table from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_average_subcort from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_average_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_average_surface from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_average_volume from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_cortex_label from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_folding_atlas from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_hemi_mask from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_exvivo_filled from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_symmetric from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/make_upright from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/map_all_labels from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/map_all_labels-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/map_central_sulcus from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/map_to_base from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/meanval from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mergeseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mideface from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/minc2seqinfo from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mkheadsurf from /bin/tcsh -f to #!/usr/bin/tcsh -f *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/mkima_index.tcl is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib/freesurfer-8.2.0/bin/mkmnc_index.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mksubjdirs from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mksurfatlas from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mmppsp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mni152reg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_only_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_only_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_only_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_rgb-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_rgb-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_subject-lh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_subject-rh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_tables-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/morph_tables-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri-func2sph from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri-funcvits from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri-sph2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_add_new_tp from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_align_long.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_create_t2combined from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_entowm_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_glmfit-sim from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_mcadura_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_mergelabels from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_motion_correct from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_motion_correct.fsl from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_motion_correct2 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_nu_correct.mni from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_reorient_LR.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_vsinus_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_preproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_volsmooth from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/ms_refine_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/orientLAS from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/parc_atlas_jackknife_test from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/pctsurfcon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/plot_structure_stats.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/polyorder from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/post-recon-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/print_unique_labels.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/progressbar.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/qdec from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rbbr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rcbf-prep from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rebuild_gca_atlas.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-base-init from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-fix-ento from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-long-tp-init from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-rcac-prep from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-surfreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-talairach from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/recon-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/recon-all-exvivo from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reconbatchjobs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reg-feat2anat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reg-mni305.2mm from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reg2subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/register.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/register_child from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/register_elderly_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/register_subject from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/register_subject_flash from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/register_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reinflate_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reinflate_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reinflate_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/remove_talairach from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/renormalize_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/renormalize_subject_keep_editting from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/renormalize_T1_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/reregister_subject_mixed from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rtview from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run-qdec-glm from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_mris_preproc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/samseg2recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/scgm-mask from /usr/bin/env tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/seg2cc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/seg2recon from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/seg2filled from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_monkey from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subject_notal from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subject_notal2 from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subject_old_skull_strip from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subject_sc from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segment_subject_talmgh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segpons from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/setlabelstat from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/sfa2fieldsign from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/show_tal from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/skip_long_make_checks from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/sphere_subject from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/sphere_subject-lh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/sphere_subject-rh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/spm_t_to_b from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/spmmat2register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/spmregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/sratio from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/stem2fname from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/surfreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/tal_compare from /bin/tcsh to #!/usr/bin/tcsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/talairach from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/talairach2 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/talairach_mgh from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/talsegprob from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/test_recon-all.csh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/test_tutorials.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/thickdiffmap from /bin/tcsh -ef to #!/usr/bin/tcsh -ef mangling shebang in /usr/lib/freesurfer-8.2.0/bin/tkmeditfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/tkregisterfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/tksurferfv from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/topofit from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/trac-all from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/trac-paths from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/trac-preproc from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/train-gcs-atlas from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpack_ima.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpack_ima1.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpack_mnc.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpackimadir from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpackimadir2 from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpackmincdir from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/unpacksdcmdir from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/UpdateNeeded from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/usbtree from /usr/bin/env perl to #!/usr/bin/perl mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vertexvol from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vlrmerge-mni from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vno_match_check from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vol2segavg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vol2subfield from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vol2symsurf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/vsm-smooth from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/wfilemask from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/wm-anat-snr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/wmedits2surf from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/wmsaseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/xcerebralseg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/xcorr from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/xfmrot from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/xhemi-tal from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/xhemireg from /bin/csh -f to #!/usr/bin/csh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/xsanatreg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_submit_jobs from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_qdec_table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_submit_postproc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_stats_tps from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_stats_slopes from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_mris_slopes from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/long_stats_combine from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/aparcstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/asegstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/tractstats2table from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/stattablediff from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/table2map from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/merge_stats_tables from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fspalm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-config from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rca-config2csh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/slicedelay from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/fsrealpath from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dsurffe from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/bbregister from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/talairach_avi from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mpr2mni305 from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/brec from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/t4img_4dfp from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/tal_QC_AZS from /bin/csh to #!/usr/bin/csh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_segmentNuclei.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/SegmentAAN.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/check_siemens_dir from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/connectgraph from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dmri_tensoreig from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/histo_fix_topology from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/histo_segment from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_area from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/label_border from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_apply_inu_correction from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_aseg_edit_reclassify from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_aseg_edit_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_auto_fill from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_bc_sc_bias_correct from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_build_priors from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_cht2p from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_classify from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_compute_structure_transforms from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_convert_mdh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_divide_segmentation from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_elastic_energy from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_estimate_tissue_parms from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_extract_conditions from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_fcili from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_gcab_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_gdfglm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_histo_normalize from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_ibmc from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_interpolate from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_label_accuracy from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_make_bem_surfaces from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_make_density_map from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_make_labels from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_make_register from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_make_template from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_mosaic from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_ms_EM from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_ms_EM_with_atlas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_ms_LDA from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_multiscale_segment from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_multispectral_segment from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_parselabel from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_partial_ribbon from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_register from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_rf_long_label from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_add_template from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_aseg_distance from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_average_parcellation from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_classify_thickness from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_compute_optimal_kernel from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_density from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_segment_tumor from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_segment_wm_damage from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_fbirn_annot from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_glm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_simulate_atrophy from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_longitudinal_surfaces from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_make_map_surfaces from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_ms_surface_CNR from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_surface_change from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_svm_classify from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_svm_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_twoclass from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_w_to_curv from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_apply_autoencoder from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_train_autoencoder from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_transform_to_COR from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_update_gca from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_vol2roi from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_wmfilter from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_xcorr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/oct_rf_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/oct_train from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/rbftest from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/regdat2xfm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/repair_siemens_file from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/spherical_st from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_SegmentSubject.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segmentBS.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/dissection_photo_gui.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/process_directory_no_upsample.sh from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_exvivo_strip from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_exvivo_norm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_SegmentSubfieldsT1Longitudinal.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_segmentSubjectT1T2_autoEstimateAlveusML.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_segmentSubjectT2_autoEstimateAlveusML.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segmentHA_T1_long.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segmentHA_T1.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segmentHA_T2.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_claustrum_seg from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_cvs_register from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_cvs_check from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_cvs_data_copy from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_easyreg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_easywarp from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_easyatlas from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_histo_atlas_segment_fireants from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_super_synth from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_pglands_seg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_sclimbic_seg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_segment_hypothalamic_subunits from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_tumorsynth from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_WMHsynthseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_compute_lgi from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mris_estimate_wm from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_recon-any from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/ConcatenateSubregionsResults.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_synthstrip from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_synthseg from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_synthsr from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_synthsr_hyperfine from /usr/bin/env bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_SegmentThalamicNuclei.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segmentThalamicNuclei.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/run_SegmentThalamicNuclei_DTI.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib/freesurfer-8.2.0/bin/segmentThalamicNuclei_DTI.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib/freesurfer-8.2.0/bin/recon-all-clinical.sh from /bin/tcsh -f to #!/usr/bin/tcsh -f mangling shebang in /usr/lib/freesurfer-8.2.0/bin/mri_segment_thalamic_nuclei_dti_cnn from /usr/bin/env bash to #!/usr/bin/bash *** WARNING: ./usr/lib/freesurfer-8.2.0/lib/tcl/allisons_surfaces.tcl is executable but has no shebang, removing executable bit mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/curv-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/curv-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/dara_data.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/dipmovie-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/eccen-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/eccen-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/fs-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/fs-make.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/fs-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/mk-fieldsign.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/offsetmovie.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/phasemovie.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/polar-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/polar-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/readenv.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/real-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/real-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/saveflat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/saveviews.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/setdefpatchview.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/solmovie-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/twocond-flat.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/twocond-masked-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/twocond-views.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/wrappers.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh mangling shebang in /usr/lib/freesurfer-8.2.0/lib/tcl/fsgdfPlot.tcl from /usr/bin/env tclsh to #!/usr/bin/tclsh + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j4 /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT Scanned 143 directories and 2721 files, processed 4 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr Scanned 142 directories and 2721 files, considered 2607 files, read 500 files, linked 97 files, 0 errors sum of sizes of linked files: 2194527 bytes Reading /builddir/build/BUILD/freesurfer8-8.2.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Irewxe + umask 022 + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd freesurfer-8.2.0 + export FREESURFER_HOME=/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0 + FREESURFER_HOME=/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0 + export PATH=/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin + PATH=/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin:/usr/bin:/bin:/usr/sbin:/sbin + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_convert + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_info + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_binarize + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint All key binaries present + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_vol2vol + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_mask + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris_inflate + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris_sphere + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris_convert + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris_info + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_watershed + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_normalize + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_em_register + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_ca_label + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_segment + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_fill + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_tessellate + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/talairach_avi + for bin in mri_convert mri_info mri_binarize mri_vol2vol mri_mask mris_inflate mris_sphere mris_convert mris_info mri_watershed mri_normalize mri_em_register mri_ca_label mri_segment mri_fill mri_tessellate talairach_avi mrisp_paint + test -x /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mrisp_paint + echo 'All key binaries present' + mri_convert --help + mri_info --help + true + mri_binarize --help + true + for bin in mri_convert mri_vol2vol mris_sphere + ldd /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_convert + grep -q 'not found' + for bin in mri_convert mri_vol2vol mris_sphere + ldd /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mri_vol2vol + grep -q 'not found' + for bin in mri_convert mri_vol2vol mris_sphere + ldd /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/lib/freesurfer-8.2.0/bin/mris_sphere + grep -q 'not found' No missing shared library dependencies + echo 'No missing shared library dependencies' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: freesurfer8-8.2.0-5.fc45.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5PQO8N + umask 022 + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + cd freesurfer-8.2.0 + LICENSEDIR=/builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer8 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer8 + cp -pr /builddir/build/BUILD/freesurfer8-8.2.0-build/freesurfer-8.2.0/LICENSE.txt /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT/usr/share/licenses/freesurfer8 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/lib/freesurfer-8.2.0/license.txt -> /etc/freesurfer/license.txt eu-readelf: bad dynamic symbol eu-readelf: bad dynamic symbol Provides: bundled(cephes) bundled(dcm2niix) bundled(dicom) bundled(jpeg) bundled(minc) bundled(netcdf) bundled(nifti) bundled(nrrdio) bundled(svm-light) freesurfer8 = 8.2.0-5.fc45 freesurfer8(x86-64) = 8.2.0-5.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/csh /usr/bin/perl /usr/bin/python3 /usr/bin/sh /usr/bin/tclsh /usr/bin/tcsh libGL.so.1()(64bit) libGLU.so.1()(64bit) libITKCommon-5.4.so.1()(64bit) libQt6Core.so.6()(64bit) libQt6Core.so.6(Qt_6)(64bit) libQt6Gui.so.6()(64bit) libQt6Gui.so.6(Qt_6)(64bit) libQt6Widgets.so.6()(64bit) libQt6Widgets.so.6(Qt_6)(64bit) libX11.so.6()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrypt.so.2()(64bit) libcrypt.so.2(XCRYPT_2.0)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.2.5)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libgiftiio.so.0()(64bit) libglut.so.3()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libitkv3p_netlib-5.4.so.1()(64bit) libitkvnl-5.4.so.1()(64bit) libitkvnl_algo-5.4.so.1()(64bit) liblapack.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmvec.so.1()(64bit) libmvec.so.1(GLIBC_2.22)(64bit) libmwlaunchermain.so()(64bit) libpthread.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libvtkCommonCore.so.1()(64bit) libvtkCommonDataModel.so.1()(64bit) libvtkCommonExecutionModel.so.1()(64bit) libvtkFiltersGeneral.so.1()(64bit) libvtkFiltersHybrid.so.1()(64bit) libvtkFiltersModeling.so.1()(64bit) libvtksys.so.1()(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: python3-freesurfer8-8.2.0-5.fc45.x86_64 Provides: python-freesurfer8 = 8.2.0-5.fc45 python3-freesurfer8 = 8.2.0-5.fc45 python3-freesurfer8(x86-64) = 8.2.0-5.fc45 python3.14-freesurfer8 = 8.2.0-5.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: freesurfer8-freeview-8.2.0-5.fc45.x86_64 Provides: freesurfer8-freeview = 8.2.0-5.fc45 freesurfer8-freeview(x86-64) = 8.2.0-5.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libGL.so.1()(64bit) libITKCommon-5.4.so.1()(64bit) libITKgiftiio-5.4.so.1()(64bit) libITKniftiio-5.4.so.1()(64bit) libQt6Core.so.6()(64bit) libQt6Core.so.6(Qt_6)(64bit) libQt6Gui.so.6()(64bit) libQt6Gui.so.6(Qt_6)(64bit) libQt6OpenGLWidgets.so.6()(64bit) libQt6OpenGLWidgets.so.6(Qt_6)(64bit) libQt6Widgets.so.6()(64bit) libQt6Widgets.so.6(Qt_6)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrypt.so.2()(64bit) libcrypt.so.2(XCRYPT_2.0)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libitkv3p_netlib-5.4.so.1()(64bit) libitkvnl-5.4.so.1()(64bit) libitkvnl_algo-5.4.so.1()(64bit) libjpeg.so.62()(64bit) libjpeg.so.62(LIBJPEG_6.2)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libm.so.6(GLIBC_2.43)(64bit) libminc2.so.5.2.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libvtkCommonComputationalGeometry.so.1()(64bit) libvtkCommonCore.so.1()(64bit) libvtkCommonDataModel.so.1()(64bit) libvtkCommonExecutionModel.so.1()(64bit) libvtkCommonMath.so.1()(64bit) libvtkCommonMisc.so.1()(64bit) libvtkCommonTransforms.so.1()(64bit) libvtkFiltersCore.so.1()(64bit) libvtkFiltersExtraction.so.1()(64bit) libvtkFiltersGeneral.so.1()(64bit) libvtkFiltersHybrid.so.1()(64bit) libvtkFiltersModeling.so.1()(64bit) libvtkFiltersSources.so.1()(64bit) libvtkGUISupportQt.so.1()(64bit) libvtkIOCore.so.1()(64bit) libvtkIOExport.so.1()(64bit) libvtkIOGeometry.so.1()(64bit) libvtkIOImage.so.1()(64bit) libvtkIOLegacy.so.1()(64bit) libvtkImagingCore.so.1()(64bit) libvtkImagingGeneral.so.1()(64bit) libvtkImagingMath.so.1()(64bit) libvtkImagingMorphological.so.1()(64bit) libvtkInteractionStyle.so.1()(64bit) libvtkRenderingAnnotation.so.1()(64bit) libvtkRenderingCore.so.1()(64bit) libvtkRenderingOpenGL2.so.1()(64bit) libvtkRenderingVolume.so.1()(64bit) libvtksys.so.1()(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: freesurfer8-tracula-8.2.0-5.fc45.x86_64 Provides: freesurfer8-tracula = 8.2.0-5.fc45 freesurfer8-tracula(x86-64) = 8.2.0-5.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/tcsh Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/freesurfer8-8.2.0-build/BUILDROOT Wrote: /builddir/build/RPMS/freesurfer8-tracula-8.2.0-5.fc45.x86_64.rpm Wrote: /builddir/build/RPMS/freesurfer8-freeview-8.2.0-5.fc45.x86_64.rpm Wrote: /builddir/build/RPMS/python3-freesurfer8-8.2.0-5.fc45.x86_64.rpm Wrote: /builddir/build/RPMS/freesurfer8-8.2.0-5.fc45.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.al1Oy9 + umask 022 + cd /builddir/build/BUILD/freesurfer8-8.2.0-build + test -d /builddir/build/BUILD/freesurfer8-8.2.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/freesurfer8-8.2.0-build + rm -rf /builddir/build/BUILD/freesurfer8-8.2.0-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: bogus date in %changelog: Tue Apr 22 2026 Morgan Hough - 8.2.0-7 bogus date in %changelog: Sun Mar 30 2026 Morgan Hough - 8.2.0-5 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-3 bogus date in %changelog: Sat Mar 29 2026 Morgan Hough - 8.2.0-2 absolute symlink: /usr/lib/freesurfer-8.2.0/license.txt -> /etc/freesurfer/license.txt Finish: rpmbuild freesurfer8-8.2.0-5.fc45.src.rpm Finish: build phase for freesurfer8-8.2.0-5.fc45.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1779760896.087886/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/freesurfer8-8.2.0-5.fc45.src.rpm) Config(child) 107 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "freesurfer8-freeview", "epoch": null, "version": "8.2.0", "release": "5.fc45", "arch": "x86_64" }, { "name": "freesurfer8-tracula", "epoch": null, "version": "8.2.0", "release": "5.fc45", "arch": "x86_64" }, { "name": "freesurfer8", "epoch": null, "version": "8.2.0", "release": "5.fc45", "arch": "src" }, { "name": "freesurfer8", "epoch": null, "version": "8.2.0", "release": "5.fc45", "arch": "x86_64" }, { "name": "python3-freesurfer8", "epoch": null, "version": "8.2.0", "release": "5.fc45", "arch": "x86_64" } ] } RPMResults finished