Warning: Permanently added '54.226.5.171' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/11064832-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 1.10 PID: 11885 Logging PID: 11887 Task: {'allow_user_ssh': False, 'appstream': False, 'background': False, 'build_id': 11064832, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '4f263a681c2a6190f2fb2e5d0dbbf98b46596a0a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'mrtrix3', 'package_version': '3.0.8-7', 'project_dirname': 'neurofedora', 'project_name': 'neurofedora', 'project_owner': 'mhough', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mhough/neurofedora/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None, 'repo_gpgcheck': False}], 'sandbox': 'mhough/neurofedora--mhough', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'mhough', 'tags': [], 'task_id': '11064832-fedora-rawhide-x86_64', 'timeout': 86400, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3 /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3 --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mhough/neurofedora/mrtrix3', '/var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3'... Running: git checkout 4f263a681c2a6190f2fb2e5d0dbbf98b46596a0a -- cmd: ['git', 'checkout', '4f263a681c2a6190f2fb2e5d0dbbf98b46596a0a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3 rc: 0 stdout: stderr: Note: switching to '4f263a681c2a6190f2fb2e5d0dbbf98b46596a0a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 4f263a6 automatic import of mrtrix3 Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3 rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading eigen-3.4.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o eigen-3.4.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/eigen-3.4.0.tar.gz/md5/4c527a9171d71a72a9d4186e65bea559/eigen-3.4.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2.57M 100 2.57M 0 0 91.48M 0 0 INFO: Reading stdout from command: md5sum eigen-3.4.0.tar.gz INFO: Downloading mrtrix3-3.0.8.tar.gz INFO: Calling: curl -H Pragma: -H 'Accept-Encoding: identity' -o mrtrix3-3.0.8.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mhough/neurofedora/mrtrix3/mrtrix3-3.0.8.tar.gz/md5/0c77980d9c5d01ebbfea44f437bf942a/mrtrix3-3.0.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3.86M 100 3.86M 0 0 60.15M 0 0 INFO: Reading stdout from command: md5sum mrtrix3-3.0.8.tar.gz tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=86400): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790965939.589153 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.9 starting (python version = 3.14.5, NVR = mock-6.9-1.fc44), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3/mrtrix3.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3 --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1790965939.589153 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3/mrtrix3.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.9 INFO: Mock Version: 6.9 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790965939.589153/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Tagging container image as mock-bootstrap-a2e06044-42e8-4a68-9e16-5e099f31b587 INFO: Checking that a2a001f70099fee13bf66f067a40615d6f35bced7b477b2fcfa382694b846462 image matches host's architecture INFO: Copy content of container a2a001f70099fee13bf66f067a40615d6f35bced7b477b2fcfa382694b846462 to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790965939.589153/root INFO: mounting a2a001f70099fee13bf66f067a40615d6f35bced7b477b2fcfa382694b846462 with podman image mount INFO: image a2a001f70099fee13bf66f067a40615d6f35bced7b477b2fcfa382694b846462 as /var/lib/containers/storage/overlay/5ba6c6f1e12ea25601b5fe388ac8b2edd9a0c548e18f86bd57dca5be27667a78/merged INFO: umounting image a2a001f70099fee13bf66f067a40615d6f35bced7b477b2fcfa382694b846462 (/var/lib/containers/storage/overlay/5ba6c6f1e12ea25601b5fe388ac8b2edd9a0c548e18f86bd57dca5be27667a78/merged) with podman image umount INFO: Removing image mock-bootstrap-a2e06044-42e8-4a68-9e16-5e099f31b587 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1790965939.589153/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.x86_64 rpm-sequoia-1.10.3-1.fc46.x86_64 dnf5-5.4.6.0-1.fc46.x86_64 dnf5-plugins-5.4.6.0-1.fc46.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: Copr repository 100% | 16.3 MiB/s | 482.8 KiB | 00m00s fedora 100% | 23.0 MiB/s | 21.9 MiB | 00m01s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 0:5.3.15-2.fc45 fedora 8.5 MiB bzip2 x86_64 0:1.0.8-24.fc45 fedora 95.0 KiB coreutils x86_64 0:9.12-1.fc46 fedora 6.3 MiB cpio x86_64 0:2.15-10.fc45 fedora 1.1 MiB diffutils x86_64 0:3.12-6.fc45 fedora 1.6 MiB fedora-release-common noarch 0:46-0.1 fedora 4.6 KiB findutils x86_64 1:4.11.0-2.fc45 fedora 1.9 MiB gawk x86_64 0:5.4.1-1.fc45 fedora 2.2 MiB glibc-minimal-langpack x86_64 0:2.44.9000-4.fc46 fedora 0.0 B grep x86_64 0:3.12-4.fc45 fedora 1.0 MiB gzip x86_64 0:1.14-4.fc45 fedora 401.6 KiB info x86_64 0:7.3-3.fc45 fedora 372.4 KiB patch x86_64 0:2.8-6.fc46 fedora 226.6 KiB redhat-rpm-config noarch 0:345-4.fc46 fedora 184.2 KiB rpm-build x86_64 0:6.1.0-1.fc46 fedora 312.1 KiB sed x86_64 0:4.10-2.fc45 fedora 866.5 KiB shadow-utils x86_64 2:4.20.0-1.fc45 fedora 3.9 MiB tar x86_64 2:1.35-9.fc45 fedora 3.0 MiB unzip x86_64 0:6.0-71.fc45 fedora 441.8 KiB util-linux x86_64 0:2.42.4-2.fc46 fedora 3.7 MiB which x86_64 0:2.25-2.fc45 fedora 83.6 KiB xz x86_64 1:5.8.4-1.fc46 fedora 1.4 MiB Installing dependencies: R-srpm-macros noarch 0:1.3.7-3.fc45 fedora 3.5 KiB add-determinism x86_64 0:0.7.3-3.fc45 fedora 2.2 MiB alternatives x86_64 0:1.33-6.fc45 fedora 62.1 KiB ansible-srpm-macros noarch 0:1-22.fc45 fedora 35.7 KiB audit-libs x86_64 0:4.2.1-2.fc45 fedora 390.5 KiB binutils x86_64 0:2.47.50-12.fc46 fedora 24.4 MiB build-reproducibility-srpm-macros noarch 0:0.7.3-3.fc45 fedora 1.2 KiB bzip2-libs x86_64 0:1.0.8-24.fc45 fedora 80.5 KiB ca-certificates noarch 0:2026.2.90_v9.0.317-1.fc46 fedora 2.6 MiB cmake-srpm-macros noarch 0:4.3.0-5.fc45 fedora 524.0 B coreutils-common x86_64 0:9.12-1.fc46 fedora 11.5 MiB crypto-policies noarch 0:20260713-2.gitc42da77.fc45 fedora 134.3 KiB curl x86_64 0:8.23.0~rc2-1.fc46 fedora 485.6 KiB cyrus-sasl-lib x86_64 0:2.1.28-37.fc45 fedora 2.3 MiB debugedit x86_64 0:5.3-3.fc45 fedora 220.8 KiB dwz x86_64 0:0.17-3.fc45 fedora 291.1 KiB ed x86_64 0:1.22.6-1.fc46 fedora 150.9 KiB efi-srpm-macros noarch 0:6-9.fc45 fedora 40.3 KiB elfutils x86_64 0:0.196-1.fc46 fedora 3.2 MiB elfutils-debuginfod-client x86_64 0:0.196-1.fc46 fedora 79.9 KiB elfutils-libelf x86_64 0:0.196-1.fc46 fedora 1.4 MiB elfutils-libs x86_64 0:0.196-1.fc46 fedora 719.6 KiB erlang-srpm-macros noarch 0:0.3.11-2.fc45 fedora 1.9 KiB fedora-gpg-keys noarch 0:46-0.3 fedora 130.3 KiB fedora-release noarch 0:46-0.1 fedora 0.0 B fedora-release-identity-basic noarch 0:46-0.1 fedora 664.0 B fedora-repos noarch 0:46-0.3 fedora 4.9 KiB fedora-repos-rawhide noarch 0:46-0.3 fedora 2.2 KiB file x86_64 0:5.48-3.fc46 fedora 101.9 KiB file-libs x86_64 0:5.48-3.fc46 fedora 12.3 MiB filesystem x86_64 0:3.18-59.fc45 fedora 112.0 B filesystem-srpm-macros noarch 0:3.18-59.fc45 fedora 38.2 KiB fips-provider x86_64 0:1.5.3-1.fc46 fedora 4.8 MiB fonts-srpm-macros noarch 1:5.0.0-4.fc45 fedora 55.8 KiB forge-srpm-macros noarch 0:0.4.0-5.fc45 fedora 38.9 KiB fpc-srpm-macros noarch 0:1.3-17.fc45 fedora 144.0 B gap-srpm-macros noarch 0:2-3.fc45 fedora 2.1 KiB gdb-minimal x86_64 0:17.2-6.fc46 fedora 14.2 MiB gdbm-libs x86_64 1:1.23-12.fc45 fedora 133.7 KiB ghc-srpm-macros noarch 0:1.10-2.fc45 fedora 792.0 B glibc x86_64 0:2.44.9000-4.fc46 fedora 7.2 MiB glibc-common x86_64 0:2.44.9000-4.fc46 fedora 1.0 MiB glibc-gconv-extra x86_64 0:2.44.9000-4.fc46 fedora 7.7 MiB gmp x86_64 1:6.3.0-6.fc45 fedora 815.2 KiB gnat-srpm-macros noarch 0:7-3.fc45 fedora 1.0 KiB gnome-srpm-macros noarch 0:1.0-2.fc45 fedora 3.5 KiB gnulib-l10n noarch 0:20241231-4.fc45 fedora 655.0 KiB gnupg2 x86_64 0:2.4.9-18.fc45 fedora 6.5 MiB gnupg2-dirmngr x86_64 0:2.4.9-18.fc45 fedora 630.1 KiB gnupg2-gpg-agent x86_64 0:2.4.9-18.fc45 fedora 678.8 KiB gnupg2-gpgconf x86_64 0:2.4.9-18.fc45 fedora 253.8 KiB gnupg2-keyboxd x86_64 0:2.4.9-18.fc45 fedora 201.3 KiB gnupg2-verify x86_64 0:2.4.9-18.fc45 fedora 356.3 KiB gnutls x86_64 0:3.8.13-5.fc46 fedora 3.8 MiB go-srpm-macros noarch 0:3.8.0-3.fc45 fedora 61.9 KiB gpgverify noarch 0:2.2-5.fc45 fedora 8.7 KiB ima-evm-utils-libs x86_64 0:1.6.2-12.fc45 fedora 56.6 KiB jansson x86_64 0:2.14-5.fc45 fedora 89.0 KiB java-srpm-macros noarch 0:1-9.fc45 fedora 870.0 B json-c x86_64 0:0.18-9.fc45 fedora 82.7 KiB kernel-srpm-macros noarch 0:1.0-30.fc45 fedora 1.9 KiB keyutils-libs x86_64 0:1.6.3-8.fc45 fedora 54.2 KiB krb5-libs x86_64 0:1.22.2-9.fc45 fedora 2.4 MiB libacl x86_64 0:2.4.0-2.fc45 fedora 43.9 KiB libarchive x86_64 0:3.8.9-2.fc46 fedora 1.0 MiB libassuan x86_64 0:2.5.7-6.fc45 fedora 163.9 KiB libattr x86_64 0:2.6.0-2.fc45 fedora 24.3 KiB libblkid x86_64 0:2.42.4-2.fc46 fedora 282.3 KiB libbrotli x86_64 0:1.2.0-6.fc45 fedora 865.0 KiB libcap x86_64 0:2.78-2.fc45 fedora 208.2 KiB libcap-ng x86_64 0:0.9.6-1.fc46 fedora 68.8 KiB libcbor x86_64 0:0.14.0-3.fc45 fedora 83.5 KiB libcom_err x86_64 0:1.47.4-2.fc45 fedora 63.0 KiB libcurl x86_64 0:8.23.0~rc2-1.fc46 fedora 1.1 MiB libeconf x86_64 0:0.7.9-4.fc45 fedora 64.8 KiB libevent x86_64 0:2.1.13-1.fc46 fedora 980.7 KiB libfdisk x86_64 0:2.42.4-2.fc46 fedora 392.3 KiB libffi x86_64 0:3.8.0-1.fc46 fedora 95.5 KiB libfido2 x86_64 0:1.17.0-5.fc45 fedora 256.5 KiB libfsverity x86_64 0:1.7-4.fc45 fedora 24.4 KiB libgcc x86_64 0:16.2.1-2.fc46.1 fedora 270.7 KiB libgcrypt x86_64 0:1.12.4-1.fc46 fedora 1.7 MiB libgomp x86_64 0:16.2.1-2.fc46.1 fedora 577.5 KiB libgpg-error x86_64 0:1.61-2.fc45 fedora 953.9 KiB libidn2 x86_64 0:2.3.8-4.fc45 fedora 556.4 KiB libksba x86_64 0:1.8.1-1.fc46 fedora 431.9 KiB liblastlog2 x86_64 0:2.42.4-2.fc46 fedora 37.6 KiB libmount x86_64 0:2.42.4-2.fc46 fedora 408.9 KiB libnghttp2 x86_64 0:1.69.0-6.fc46 fedora 166.1 KiB libnghttp3 x86_64 0:1.18.0-1.fc45 fedora 163.4 KiB libpfm x86_64 0:4.13.0-23.fc45 fedora 1.7 MiB libpkgconf x86_64 0:2.5.1-2.fc45 fedora 90.1 KiB libpsl x86_64 0:0.23.3-1.fc46 fedora 80.4 KiB libselinux x86_64 0:3.11-5.fc46 fedora 205.2 KiB libselinux-utils x86_64 0:3.11-5.fc46 fedora 306.0 KiB libsemanage x86_64 0:3.11-4.fc46 fedora 320.6 KiB libsepol x86_64 0:3.11-2.fc45 fedora 866.1 KiB libsmartcols x86_64 0:2.42.4-2.fc46 fedora 188.5 KiB libssh x86_64 0:0.12.2-1.fc45 fedora 725.7 KiB libssh-config noarch 0:0.12.2-1.fc45 fedora 277.0 B libstdc++ x86_64 0:16.2.1-2.fc46.1 fedora 3.1 MiB libtasn1 x86_64 0:4.21.0-2.fc45 fedora 176.6 KiB libtool-ltdl x86_64 0:2.6.2-1.fc46 fedora 70.0 KiB libunistring x86_64 0:1.1-12.fc45 fedora 1.7 MiB libusb1 x86_64 0:1.0.30-2.fc45 fedora 180.1 KiB libuuid x86_64 0:2.42.4-2.fc46 fedora 37.2 KiB libverto x86_64 0:0.3.2-13.fc45 fedora 25.3 KiB libxcrypt x86_64 0:4.5.2-4.fc45 fedora 293.2 KiB libxml2 x86_64 0:2.15.4-1.fc46 fedora 1.7 MiB libzstd x86_64 0:1.5.7-6.fc45 fedora 956.1 KiB linkdupes x86_64 0:0.7.3-3.fc45 fedora 782.1 KiB lua-libs x86_64 0:5.5.1-2.fc46 fedora 298.0 KiB lua-srpm-macros noarch 0:1-18.fc45 fedora 1.3 KiB lz4-libs x86_64 0:1.10.0-5.fc45 fedora 165.3 KiB meson-srpm-macros noarch 0:1.12.1-2.fc46 fedora 1.7 KiB mpfr x86_64 0:4.2.2-4.fc45 fedora 849.2 KiB ncurses-base noarch 0:6.6-3.fc45 fedora 329.7 KiB ncurses-libs x86_64 0:6.6-3.fc45 fedora 969.1 KiB nettle x86_64 0:4.0-5.fc45 fedora 801.9 KiB ngtcp2 x86_64 0:1.22.1-3.fc45 fedora 334.3 KiB ngtcp2-crypto-ossl x86_64 0:1.22.1-3.fc45 fedora 51.6 KiB npth x86_64 0:1.8-5.fc45 fedora 49.5 KiB ocaml-srpm-macros noarch 0:11-4.fc45 fedora 1.9 KiB openblas-srpm-macros noarch 0:2-22.fc45 fedora 112.0 B openldap x86_64 0:2.6.14-1.fc46 fedora 678.9 KiB openssl-libs x86_64 1:4.0.3-1.fc46 fedora 6.7 MiB p11-kit x86_64 0:0.26.5-1.fc45 fedora 2.6 MiB p11-kit-trust x86_64 0:0.26.5-1.fc45 fedora 478.4 KiB package-notes-srpm-macros noarch 0:0.20-2.fc45 fedora 1.6 KiB pam-libs x86_64 0:1.7.2-4.fc45 fedora 134.5 KiB pcre2 x86_64 0:10.47-1.fc45.2 fedora 718.5 KiB pcre2-syntax noarch 0:10.47-1.fc45.2 fedora 281.9 KiB perl-srpm-macros noarch 0:1-65.fc45 fedora 861.0 B pkgconf x86_64 0:2.5.1-2.fc45 fedora 92.7 KiB pkgconf-m4 noarch 0:2.5.1-2.fc45 fedora 14.3 KiB pkgconf-pkg-config x86_64 0:2.5.1-2.fc45 fedora 989.0 B policycoreutils x86_64 0:3.11-2.fc45 fedora 892.9 KiB popt x86_64 0:1.19-11.fc45 fedora 136.7 KiB publicsuffix-list-dafsa noarch 0:20260624-2.fc45 fedora 71.3 KiB pyproject-srpm-macros noarch 0:1.23.2-1.fc45 fedora 3.4 KiB python-srpm-macros noarch 0:3.15-2.fc45 fedora 51.6 KiB qt5-srpm-macros noarch 0:5.15.18-3.fc45 fedora 500.0 B qt6-srpm-macros noarch 0:6.11.2-1.fc46 fedora 472.0 B readline x86_64 0:8.3-6.fc45 fedora 515.5 KiB redhat-systemd-presets noarch 0:102-3.fc45 fedora 1.0 KiB redhat-systemd-presets-common noarch 0:102-3.fc45 fedora 16.9 KiB rpm x86_64 0:6.1.0-1.fc46 fedora 3.1 MiB rpm-build-libs x86_64 0:6.1.0-1.fc46 fedora 288.3 KiB rpm-libs x86_64 0:6.1.0-1.fc46 fedora 1.1 MiB rpm-plugin-selinux x86_64 0:6.1.0-1.fc46 fedora 11.9 KiB rpm-sequoia x86_64 0:1.10.3-1.fc46 fedora 2.4 MiB rpm-sign-libs x86_64 0:6.1.0-1.fc46 fedora 39.6 KiB rust-srpm-macros noarch 0:28.5-2.fc45 fedora 5.5 KiB selinux-policy noarch 0:45.20-1.fc46 fedora 32.1 KiB selinux-policy-targeted noarch 0:45.20-1.fc46 fedora 19.0 MiB setup noarch 0:2.15.1-2.fc45 fedora 725.6 KiB sqlite-libs x86_64 0:3.53.4-1.fc45 fedora 1.6 MiB systemd-libs x86_64 0:262-3.fc46 fedora 2.8 MiB systemd-standalone-sysusers x86_64 0:262-3.fc46 fedora 981.3 KiB tpm2-tss x86_64 0:4.2.0-1.fc45 fedora 1.7 MiB tree-sitter-srpm-macros noarch 0:0.4.6-2.fc45 fedora 8.6 KiB util-linux-core x86_64 0:2.42.4-2.fc46 fedora 1.5 MiB xxhash-libs x86_64 0:0.8.4-1.fc46 fedora 94.0 KiB xz-libs x86_64 1:5.8.4-1.fc46 fedora 221.7 KiB zig-srpm-macros noarch 0:1-9.fc45 fedora 1.3 KiB zip x86_64 0:3.0-46.fc45 fedora 694.1 KiB zlib-ng-compat x86_64 0:2.3.3-6.fc45 fedora 165.6 KiB zstd x86_64 0:1.5.7-6.fc45 fedora 502.6 KiB Installing groups: Buildsystem building group Transaction Summary: Installing: 190 packages Total size of inbound packages is 71 MiB. Need to download 71 MiB. After this operation, 230 MiB extra will be used (install 230 MiB, remove 0 B). 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MiB/s | 456.8 KiB | 00m00s [143/190] libksba-0:1.8.1-1.fc46.x86_64 100% | 33.7 MiB/s | 172.6 KiB | 00m00s [144/190] openldap-0:2.6.14-1.fc46.x86_ 100% | 33.3 MiB/s | 272.6 KiB | 00m00s [145/190] gnutls-0:3.8.13-5.fc46.x86_64 100% | 101.6 MiB/s | 1.4 MiB | 00m00s [146/190] libusb1-0:1.0.30-2.fc45.x86_6 100% | 11.7 MiB/s | 83.8 KiB | 00m00s [147/190] libidn2-0:2.3.8-4.fc45.x86_64 100% | 34.2 MiB/s | 175.2 KiB | 00m00s [148/190] libtasn1-0:4.21.0-2.fc45.x86_ 100% | 18.5 MiB/s | 75.9 KiB | 00m00s [149/190] libunistring-0:1.1-12.fc45.x8 100% | 88.8 MiB/s | 545.8 KiB | 00m00s [150/190] p11-kit-0:0.26.5-1.fc45.x86_6 100% | 91.1 MiB/s | 560.0 KiB | 00m00s [151/190] nettle-0:4.0-5.fc45.x86_64 100% | 59.9 MiB/s | 429.7 KiB | 00m00s [152/190] cyrus-sasl-lib-0:2.1.28-37.fc 100% | 99.8 MiB/s | 817.8 KiB | 00m00s [153/190] libevent-0:2.1.13-1.fc46.x86_ 100% | 47.1 MiB/s | 289.4 KiB | 00m00s [154/190] libtool-ltdl-0:2.6.2-1.fc46.x 100% | 7.2 MiB/s | 36.8 KiB | 00m00s [155/190] libffi-0:3.8.0-1.fc46.x86_64 100% | 15.1 MiB/s | 46.4 KiB | 00m00s [156/190] gdbm-libs-1:1.23-12.fc45.x86_ 100% | 19.0 MiB/s | 58.2 KiB | 00m00s [157/190] alternatives-0:1.33-6.fc45.x8 100% | 9.6 MiB/s | 39.4 KiB | 00m00s [158/190] jansson-0:2.14-5.fc45.x86_64 100% | 15.3 MiB/s | 46.9 KiB | 00m00s [159/190] pkgconf-pkg-config-0:2.5.1-2. 100% | 1.9 MiB/s | 9.5 KiB | 00m00s [160/190] pkgconf-0:2.5.1-2.fc45.x86_64 100% | 9.6 MiB/s | 49.0 KiB | 00m00s [161/190] pkgconf-m4-0:2.5.1-2.fc45.noa 100% | 4.5 MiB/s | 13.8 KiB | 00m00s [162/190] libpkgconf-0:2.5.1-2.fc45.x86 100% | 10.4 MiB/s | 42.6 KiB | 00m00s [163/190] binutils-0:2.47.50-12.fc46.x8 100% | 207.7 MiB/s | 5.2 MiB | 00m00s [164/190] fedora-release-0:46-0.1.noarc 100% | 1.7 MiB/s | 11.9 KiB | 00m00s [165/190] p11-kit-trust-0:0.26.5-1.fc45 100% | 14.3 MiB/s | 146.3 KiB | 00m00s [166/190] systemd-standalone-sysusers-0 100% | 105.8 MiB/s | 433.4 KiB | 00m00s [167/190] xxhash-libs-0:0.8.4-1.fc46.x8 100% | 10.1 MiB/s | 41.3 KiB | 00m00s [168/190] fedora-release-identity-basic 100% | 4.1 MiB/s | 12.7 KiB | 00m00s [169/190] libcurl-0:8.23.0~rc2-1.fc46.x 100% | 121.1 MiB/s | 495.9 KiB | 00m00s [170/190] krb5-libs-0:1.22.2-9.fc45.x86 100% | 112.0 MiB/s | 803.1 KiB | 00m00s [171/190] libbrotli-0:1.2.0-6.fc45.x86_ 100% | 37.7 MiB/s | 347.3 KiB | 00m00s [172/190] libnghttp2-0:1.69.0-6.fc46.x8 100% | 10.8 MiB/s | 77.2 KiB | 00m00s [173/190] libnghttp3-0:1.18.0-1.fc45.x8 100% | 14.7 MiB/s | 75.1 KiB | 00m00s [174/190] gdb-minimal-0:17.2-6.fc46.x86 100% | 157.9 MiB/s | 4.7 MiB | 00m00s [175/190] libpsl-0:0.23.3-1.fc46.x86_64 100% | 9.4 MiB/s | 67.7 KiB | 00m00s [176/190] libssh-0:0.12.2-1.fc45.x86_64 100% | 48.2 MiB/s | 295.9 KiB | 00m00s [177/190] ngtcp2-0:1.22.1-3.fc45.x86_64 100% | 38.5 MiB/s | 157.7 KiB | 00m00s [178/190] ngtcp2-crypto-ossl-0:1.22.1-3 100% | 6.8 MiB/s | 27.8 KiB | 00m00s [179/190] keyutils-libs-0:1.6.3-8.fc45. 100% | 7.7 MiB/s | 31.5 KiB | 00m00s [180/190] libcom_err-0:1.47.4-2.fc45.x8 100% | 6.5 MiB/s | 26.6 KiB | 00m00s [181/190] publicsuffix-list-dafsa-0:202 100% | 14.9 MiB/s | 61.1 KiB | 00m00s [182/190] libverto-0:0.3.2-13.fc45.x86_ 100% | 5.1 MiB/s | 21.0 KiB | 00m00s [183/190] libssh-config-0:0.12.2-1.fc45 100% | 2.9 MiB/s | 8.9 KiB | 00m00s [184/190] libfido2-0:1.17.0-5.fc45.x86_ 100% | 26.1 MiB/s | 106.9 KiB | 00m00s [185/190] libcbor-0:0.14.0-3.fc45.x86_6 100% | 12.0 MiB/s | 36.8 KiB | 00m00s [186/190] policycoreutils-0:3.11-2.fc45 100% | 63.7 MiB/s | 261.0 KiB | 00m00s [187/190] selinux-policy-0:45.20-1.fc46 100% | 10.2 MiB/s | 41.6 KiB | 00m00s [188/190] libselinux-utils-0:3.11-5.fc4 100% | 24.2 MiB/s | 123.8 KiB | 00m00s [189/190] rpm-plugin-selinux-0:6.1.0-1. 100% | 3.5 MiB/s | 17.8 KiB | 00m00s [190/190] selinux-policy-targeted-0:45. 100% | 184.4 MiB/s | 6.8 MiB | 00m00s -------------------------------------------------------------------------------- [190/190] Total 100% | 161.4 MiB/s | 71.5 MiB | 00m00s Running transaction Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0x91211FCE: UserID : "Fedora (46) " Fingerprint: D924B10D3E810DABDD8B56B596E7E91491211FCE From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-46-primary The key was successfully imported. Importing OpenPGP key 0xF577861E: UserID : "Fedora (45) " Fingerprint: 4F50A6114CD5C6976A7F1179655A4B02F577861E From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-45-primary The key was successfully imported. Importing OpenPGP key 0x9488FB64: UserID : "Fedora (47) " Fingerprint: B2E766FA50CA6FA2D5ED06FC09D879E09488FB64 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-47-primary The key was successfully imported. [ 1/192] Verify package files 100% | 648.0 B/s | 190.0 B | 00m00s >>> Running %pretrans scriptlet: filesystem-0:3.18-59.fc45.x86_64 >>> Finished %pretrans scriptlet: filesystem-0:3.18-59.fc45.x86_64 >>> [RPM] failed to open /var/lib/mock/fedora-rawhide-x86_64-1790965939.589153/root/etc/group for id/name lookup: No such file or directory [ 2/192] Prepare transaction 100% | 3.1 KiB/s | 190.0 B | 00m00s [ 3/192] Installing libgcc-0:16.2.1-2. 100% | 266.0 MiB/s | 272.4 KiB | 00m00s [ 4/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 1.5 KiB | 00m00s [ 5/192] Installing redhat-systemd-pre 100% | 0.0 B/s | 18.1 KiB | 00m00s [ 6/192] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 7/192] Installing publicsuffix-list- 100% | 0.0 B/s | 72.0 KiB | 00m00s [ 8/192] Installing fedora-release-ide 100% | 0.0 B/s | 920.0 B | 00m00s [ 9/192] Installing fedora-gpg-keys-0: 100% | 44.4 MiB/s | 181.7 KiB | 00m00s [ 10/192] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.5 KiB | 00m00s [ 11/192] Installing fedora-repos-0:46- 100% | 0.0 B/s | 5.9 KiB | 00m00s [ 12/192] Installing fedora-release-com 100% | 7.8 MiB/s | 8.0 KiB | 00m00s [ 13/192] Installing fedora-release-0:4 100% | 17.3 KiB/s | 124.0 B | 00m00s >>> Running sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Finished sysusers scriptlet: setup-0:2.15.1-2.fc45.noarch >>> Scriptlet output: >>> Creating group 'adm' with GID 4. >>> Creating group 'audio' with GID 63. >>> Creating group 'cdrom' with GID 11. >>> Creating group 'clock' with GID 103. >>> Creating group 'dialout' with GID 18. >>> Creating group 'disk' with GID 6. >>> Creating group 'floppy' with GID 19. >>> Creating group 'ftp' with GID 50. >>> Creating group 'games' with GID 20. >>> Creating group 'input' with GID 104. >>> Creating group 'kmem' with GID 9. >>> Creating group 'kvm' with GID 36. >>> Creating group 'lock' with GID 54. >>> Creating group 'lp' with GID 7. >>> Creating group 'mail' with GID 12. >>> Creating group 'man' with GID 15. >>> Creating group 'mem' with GID 8. >>> Creating group 'nobody' with GID 65534. >>> Creating group 'render' with GID 105. >>> Creating group 'root' with GID 0. >>> Creating group 'sgx' with GID 106. >>> Creating group 'sys' with GID 3. >>> Creating group 'tape' with GID 33. >>> Creating group 'tty' with GID 5. >>> Creating group 'users' with GID 100. >>> Creating group 'utmp' with GID 22. >>> Creating group 'video' with GID 39. >>> Creating group 'wheel' with GID 10. >>> Creating user 'adm' (adm) with UID 3 and GID 4. >>> Creating group 'bin' with GID 1. >>> Creating user 'bin' (bin) with UID 1 and GID 1. >>> Creating group 'daemon' with GID 2. >>> Creating user 'daemon' (daemon) with UID 2 and GID 2. >>> Creating user 'ftp' (FTP User) with UID 14 and GID 50. >>> Creating user 'games' (games) with UID 12 and GID 100. >>> Creating user 'halt' (halt) with UID 7 and GID 0. >>> Creating user 'lp' (lp) with UID 4 and GID 7. >>> Creating user 'mail' (mail) with UID 8 and GID 12. >>> Creating user 'nobody' (Kernel Overflow User) with UID 65534 and GID 65534. >>> Creating user 'operator' (operator) with UID 11 and GID 0. >>> Creating user 'root' (Super User) with UID 0 and GID 0. >>> Creating user 'shutdown' (shutdown) with UID 6 and GID 0. >>> Creating user 'sync' (sync) with UID 5 and GID 0. >>> [ 14/192] Installing setup-0:2.15.1-2.f 100% | 35.7 MiB/s | 731.3 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 15/192] Installing filesystem-0:3.18- 100% | 2.4 MiB/s | 253.6 KiB | 00m00s [ 16/192] Installing pkgconf-m4-0:2.5.1 100% | 0.0 B/s | 14.7 KiB | 00m00s [ 17/192] Installing pcre2-syntax-0:10. 100% | 277.7 MiB/s | 284.3 KiB | 00m00s [ 18/192] Installing gnulib-l10n-0:2024 100% | 215.5 MiB/s | 661.9 KiB | 00m00s [ 19/192] Installing coreutils-common-0 100% | 361.3 MiB/s | 11.6 MiB | 00m00s [ 20/192] Installing ncurses-base-0:6.6 100% | 86.7 MiB/s | 355.3 KiB | 00m00s [ 21/192] Installing bash-0:5.3.15-2.fc 100% | 223.0 MiB/s | 8.5 MiB | 00m00s [ 22/192] Installing glibc-common-0:2.4 100% | 45.0 MiB/s | 1.0 MiB | 00m00s [ 23/192] Installing glibc-gconv-extra- 100% | 278.1 MiB/s | 7.8 MiB | 00m00s [ 24/192] Installing glibc-0:2.44.9000- 100% | 156.1 MiB/s | 7.2 MiB | 00m00s [ 25/192] Installing ncurses-libs-0:6.6 100% | 238.0 MiB/s | 974.9 KiB | 00m00s [ 26/192] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 27/192] Installing zlib-ng-compat-0:2 100% | 162.5 MiB/s | 166.4 KiB | 00m00s [ 28/192] Installing bzip2-libs-0:1.0.8 100% | 79.7 MiB/s | 81.6 KiB | 00m00s [ 29/192] Installing libgpg-error-0:1.6 100% | 44.6 MiB/s | 959.7 KiB | 00m00s [ 30/192] Installing readline-0:8.3-6.f 100% | 252.8 MiB/s | 517.7 KiB | 00m00s [ 31/192] Installing libstdc++-0:16.2.1 100% | 342.9 MiB/s | 3.1 MiB | 00m00s [ 32/192] Installing libzstd-0:1.5.7-6. 100% | 311.7 MiB/s | 957.4 KiB | 00m00s [ 33/192] Installing elfutils-libelf-0: 100% | 360.7 MiB/s | 1.4 MiB | 00m00s [ 34/192] Installing libassuan-0:2.5.7- 100% | 161.8 MiB/s | 165.7 KiB | 00m00s [ 35/192] Installing libgcrypt-0:1.12.4 100% | 333.2 MiB/s | 1.7 MiB | 00m00s [ 36/192] Installing gmp-1:6.3.0-6.fc45 100% | 399.1 MiB/s | 817.4 KiB | 00m00s [ 37/192] Installing libacl-0:2.4.0-2.f 100% | 0.0 B/s | 44.7 KiB | 00m00s [ 38/192] Installing systemd-libs-0:262 100% | 346.3 MiB/s | 2.8 MiB | 00m00s [ 39/192] Installing libuuid-0:2.42.4-2 100% | 0.0 B/s | 38.2 KiB | 00m00s [ 40/192] Installing popt-0:1.19-11.fc4 100% | 70.0 MiB/s | 143.3 KiB | 00m00s [ 41/192] Installing xz-libs-1:5.8.4-1. 100% | 217.6 MiB/s | 222.8 KiB | 00m00s [ 42/192] Installing sqlite-libs-0:3.53 100% | 323.8 MiB/s | 1.6 MiB | 00m00s [ 43/192] Installing npth-0:1.8-5.fc45. 100% | 0.0 B/s | 50.6 KiB | 00m00s [ 44/192] Installing elfutils-libs-0:0. 100% | 352.2 MiB/s | 721.3 KiB | 00m00s [ 45/192] Installing libblkid-0:2.42.4- 100% | 276.6 MiB/s | 283.3 KiB | 00m00s [ 46/192] Installing libsepol-0:3.11-2. 100% | 282.3 MiB/s | 867.1 KiB | 00m00s [ 47/192] Installing gnupg2-gpgconf-0:2 100% | 13.2 MiB/s | 255.9 KiB | 00m00s [ 48/192] Installing pcre2-0:10.47-1.fc 100% | 234.4 MiB/s | 720.0 KiB | 00m00s [ 49/192] Installing libselinux-0:3.11- 100% | 201.6 MiB/s | 206.4 KiB | 00m00s [ 50/192] Installing grep-0:3.12-4.fc45 100% | 45.6 MiB/s | 1.0 MiB | 00m00s [ 51/192] Installing sed-0:4.10-2.fc45. 100% | 38.8 MiB/s | 874.9 KiB | 00m00s [ 52/192] Installing findutils-1:4.11.0 100% | 81.6 MiB/s | 2.0 MiB | 00m00s [ 53/192] Installing libxcrypt-0:4.5.2- 100% | 144.5 MiB/s | 295.9 KiB | 00m00s [ 54/192] Installing json-c-0:0.18-9.fc 100% | 82.0 MiB/s | 83.9 KiB | 00m00s [ 55/192] Installing libtasn1-0:4.21.0- 100% | 174.3 MiB/s | 178.5 KiB | 00m00s [ 56/192] Installing libunistring-0:1.1 100% | 346.9 MiB/s | 1.7 MiB | 00m00s [ 57/192] Installing libidn2-0:2.3.8-4. 100% | 61.0 MiB/s | 562.6 KiB | 00m00s [ 58/192] Installing crypto-policies-0: 100% | 31.2 MiB/s | 159.5 KiB | 00m00s [ 59/192] Installing xz-1:5.8.4-1.fc46. 100% | 54.8 MiB/s | 1.4 MiB | 00m00s [ 60/192] Installing libmount-0:2.42.4- 100% | 200.2 MiB/s | 410.0 KiB | 00m00s [ 61/192] Installing gnupg2-verify-0:2. 100% | 18.4 MiB/s | 357.7 KiB | 00m00s [ 62/192] Installing mpfr-0:4.2.2-4.fc4 100% | 277.0 MiB/s | 850.9 KiB | 00m00s [ 63/192] Installing gawk-0:5.4.1-1.fc4 100% | 89.1 MiB/s | 2.2 MiB | 00m00s [ 64/192] Installing dwz-0:0.17-3.fc45. 100% | 15.0 MiB/s | 292.5 KiB | 00m00s [ 65/192] Installing libksba-0:1.8.1-1. 100% | 212.1 MiB/s | 434.4 KiB | 00m00s [ 66/192] Installing unzip-0:6.0-71.fc4 100% | 22.9 MiB/s | 445.3 KiB | 00m00s [ 67/192] Installing file-libs-0:5.48-3 100% | 617.2 MiB/s | 12.3 MiB | 00m00s [ 68/192] Installing file-0:5.48-3.fc46 100% | 5.3 MiB/s | 103.4 KiB | 00m00s [ 69/192] Installing diffutils-0:3.12-6 100% | 68.0 MiB/s | 1.6 MiB | 00m00s [ 70/192] Installing libattr-0:2.6.0-2. 100% | 24.7 MiB/s | 25.2 KiB | 00m00s [ 71/192] Installing libeconf-0:0.7.9-4 100% | 64.9 MiB/s | 66.4 KiB | 00m00s [ 72/192] Installing libcap-ng-0:0.9.6- 100% | 69.0 MiB/s | 70.6 KiB | 00m00s [ 73/192] Installing audit-libs-0:4.2.1 100% | 191.9 MiB/s | 393.1 KiB | 00m00s [ 74/192] Installing pam-libs-0:1.7.2-4 100% | 133.7 MiB/s | 136.9 KiB | 00m00s [ 75/192] Installing libcap-0:2.78-2.fc 100% | 11.0 MiB/s | 213.3 KiB | 00m00s [ 76/192] Installing libsemanage-0:3.11 100% | 157.4 MiB/s | 322.4 KiB | 00m00s [ 77/192] Installing libsmartcols-0:2.4 100% | 185.2 MiB/s | 189.6 KiB | 00m00s [ 78/192] Installing lua-libs-0:5.5.1-2 100% | 292.4 MiB/s | 299.4 KiB | 00m00s [ 79/192] Installing libffi-0:3.8.0-1.f 100% | 94.6 MiB/s | 96.9 KiB | 00m00s [ 80/192] Installing p11-kit-0:0.26.5-1 100% | 97.6 MiB/s | 2.6 MiB | 00m00s [ 81/192] Installing alternatives-0:1.3 100% | 3.5 MiB/s | 63.6 KiB | 00m00s [ 82/192] Installing p11-kit-trust-0:0. 100% | 16.7 MiB/s | 480.1 KiB | 00m00s [ 83/192] Installing ngtcp2-0:1.22.1-3. 100% | 164.0 MiB/s | 335.8 KiB | 00m00s [ 84/192] Installing util-linux-core-0: 100% | 60.5 MiB/s | 1.5 MiB | 00m00s [ 85/192] Installing liblastlog2-0:2.42 100% | 6.5 MiB/s | 39.8 KiB | 00m00s [ 86/192] Installing zip-0:3.0-46.fc45. 100% | 31.0 MiB/s | 698.0 KiB | 00m00s [ 87/192] Installing gnupg2-keyboxd-0:2 100% | 28.3 MiB/s | 202.5 KiB | 00m00s [ 88/192] Installing libpsl-0:0.23.3-1. 100% | 79.6 MiB/s | 81.5 KiB | 00m00s [ 89/192] Installing tar-2:1.35-9.fc45. 100% | 106.2 MiB/s | 3.0 MiB | 00m00s [ 90/192] Installing linkdupes-0:0.7.3- 100% | 38.3 MiB/s | 783.5 KiB | 00m00s [ 91/192] Installing libselinux-utils-0 100% | 15.6 MiB/s | 320.4 KiB | 00m00s [ 92/192] Installing libfdisk-0:2.42.4- 100% | 192.0 MiB/s | 393.2 KiB | 00m00s [ 93/192] Installing fips-provider-0:1. 100% | 371.5 MiB/s | 4.8 MiB | 00m00s [ 94/192] Installing openssl-libs-1:4.0 100% | 334.9 MiB/s | 6.7 MiB | 00m00s [ 95/192] Installing coreutils-0:9.12-1 100% | 147.7 MiB/s | 6.4 MiB | 00m00s [ 96/192] Installing ca-certificates-0: 100% | 2.0 MiB/s | 2.5 MiB | 00m01s [ 97/192] Installing gzip-0:1.14-4.fc45 100% | 18.1 MiB/s | 407.2 KiB | 00m00s [ 98/192] Installing util-linux-0:2.42. 100% | 87.4 MiB/s | 3.8 MiB | 00m00s [ 99/192] Installing policycoreutils-0: 100% | 28.1 MiB/s | 921.4 KiB | 00m00s [100/192] Installing selinux-policy-0:4 100% | 1.5 MiB/s | 34.5 KiB | 00m00s [101/192] Installing selinux-policy-tar 100% | 196.8 MiB/s | 15.2 MiB | 00m00s [102/192] Installing rpm-sequoia-0:1.10 100% | 305.9 MiB/s | 2.4 MiB | 00m00s [103/192] Installing libfsverity-0:1.7- 100% | 24.8 MiB/s | 25.4 KiB | 00m00s [104/192] Installing libevent-0:2.1.13- 100% | 320.5 MiB/s | 984.5 KiB | 00m00s [105/192] Installing ngtcp2-crypto-ossl 100% | 0.0 B/s | 52.5 KiB | 00m00s [106/192] Installing libusb1-0:1.0.30-2 100% | 12.7 MiB/s | 181.8 KiB | 00m00s >>> Running sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.x86_64 >>> Finished sysusers scriptlet: tpm2-tss-0:4.2.0-1.fc45.x86_64 >>> Scriptlet output: >>> Creating group 'tss' with GID 59. >>> Creating user 'tss' (Account used for TPM access) with UID 59 and GID 59. >>> [107/192] Installing tpm2-tss-0:4.2.0-1 100% | 238.2 MiB/s | 1.7 MiB | 00m00s [108/192] Installing ima-evm-utils-libs 100% | 56.5 MiB/s | 57.9 KiB | 00m00s [109/192] Installing gnupg2-gpg-agent-0 100% | 23.0 MiB/s | 682.8 KiB | 00m00s [110/192] Installing nettle-0:4.0-5.fc4 100% | 262.0 MiB/s | 805.0 KiB | 00m00s [111/192] Installing gnutls-0:3.8.13-5. 100% | 319.8 MiB/s | 3.8 MiB | 00m00s [112/192] Installing zstd-0:1.5.7-6.fc4 100% | 23.5 MiB/s | 506.1 KiB | 00m00s [113/192] Installing libxml2-0:2.15.4-1 100% | 71.9 MiB/s | 1.7 MiB | 00m00s [114/192] Installing bzip2-0:1.0.8-24.f 100% | 5.1 MiB/s | 99.5 KiB | 00m00s [115/192] Installing add-determinism-0: 100% | 90.0 MiB/s | 2.2 MiB | 00m00s [116/192] Installing build-reproducibil 100% | 1.5 MiB/s | 1.5 KiB | 00m00s [117/192] Installing cpio-0:2.15-10.fc4 100% | 50.2 MiB/s | 1.1 MiB | 00m00s [118/192] Installing ed-0:1.22.6-1.fc46 100% | 7.9 MiB/s | 153.2 KiB | 00m00s [119/192] Installing patch-0:2.8-6.fc46 100% | 11.7 MiB/s | 228.1 KiB | 00m00s [120/192] Installing libpfm-0:4.13.0-23 100% | 432.1 MiB/s | 1.7 MiB | 00m00s [121/192] Installing lz4-libs-0:1.10.0- 100% | 162.5 MiB/s | 166.4 KiB | 00m00s [122/192] Installing libarchive-0:3.8.9 100% | 245.5 MiB/s | 1.0 MiB | 00m00s [123/192] Installing libgomp-0:16.2.1-2 100% | 282.7 MiB/s | 578.9 KiB | 00m00s [124/192] Installing libtool-ltdl-0:2.6 100% | 69.5 MiB/s | 71.1 KiB | 00m00s [125/192] Installing gdbm-libs-1:1.23-1 100% | 132.2 MiB/s | 135.4 KiB | 00m00s [126/192] Installing cyrus-sasl-lib-0:2 100% | 97.4 MiB/s | 2.3 MiB | 00m00s [127/192] Installing openldap-0:2.6.14- 100% | 222.2 MiB/s | 682.7 KiB | 00m00s [128/192] Installing gnupg2-dirmngr-0:2 100% | 22.9 MiB/s | 632.8 KiB | 00m00s [129/192] Installing gnupg2-0:2.4.9-18. 100% | 175.7 MiB/s | 6.5 MiB | 00m00s [130/192] Installing gpgverify-0:2.2-5. 100% | 9.2 MiB/s | 9.4 KiB | 00m00s [131/192] Installing jansson-0:2.14-5.f 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [132/192] Installing libpkgconf-0:2.5.1 100% | 89.1 MiB/s | 91.3 KiB | 00m00s [133/192] Installing pkgconf-0:2.5.1-2. 100% | 5.2 MiB/s | 95.2 KiB | 00m00s [134/192] Installing pkgconf-pkg-config 100% | 98.5 KiB/s | 1.8 KiB | 00m00s [135/192] Installing systemd-standalone 100% | 45.7 MiB/s | 981.8 KiB | 00m00s [136/192] Installing rpm-libs-0:6.1.0-1 100% | 274.8 MiB/s | 1.1 MiB | 00m00s [137/192] Installing rpm-sign-libs-0:6. 100% | 39.5 MiB/s | 40.5 KiB | 00m00s [138/192] Installing rpm-build-libs-0:6 100% | 282.4 MiB/s | 289.2 KiB | 00m00s [139/192] Installing xxhash-libs-0:0.8. 100% | 93.1 MiB/s | 95.4 KiB | 00m00s [140/192] Installing libbrotli-0:1.2.0- 100% | 282.3 MiB/s | 867.3 KiB | 00m00s [141/192] Installing libnghttp2-0:1.69. 100% | 163.3 MiB/s | 167.3 KiB | 00m00s [142/192] Installing libnghttp3-0:1.18. 100% | 161.0 MiB/s | 164.8 KiB | 00m00s [143/192] Installing keyutils-libs-0:1. 100% | 54.3 MiB/s | 55.6 KiB | 00m00s [144/192] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 64.1 KiB | 00m00s [145/192] Installing libverto-0:0.3.2-1 100% | 26.4 MiB/s | 27.1 KiB | 00m00s [146/192] Installing krb5-libs-0:1.22.2 100% | 298.4 MiB/s | 2.4 MiB | 00m00s [147/192] Installing libcbor-0:0.14.0-3 100% | 82.9 MiB/s | 84.9 KiB | 00m00s [148/192] Installing libfido2-0:1.17.0- 100% | 252.0 MiB/s | 258.1 KiB | 00m00s [149/192] Installing libssh-0:0.12.2-1. 100% | 236.9 MiB/s | 727.8 KiB | 00m00s [150/192] Installing libcurl-0:8.23.0~r 100% | 360.6 MiB/s | 1.1 MiB | 00m00s [151/192] Installing elfutils-debuginfo 100% | 4.2 MiB/s | 82.2 KiB | 00m00s [152/192] Installing elfutils-0:0.196-1 100% | 122.2 MiB/s | 3.2 MiB | 00m00s [153/192] Installing binutils-0:2.47.50 100% | 281.5 MiB/s | 24.5 MiB | 00m00s [154/192] Installing gdb-minimal-0:17.2 100% | 232.2 MiB/s | 14.2 MiB | 00m00s [155/192] Installing debugedit-0:5.3-3. 100% | 10.9 MiB/s | 224.1 KiB | 00m00s [156/192] Installing curl-0:8.23.0~rc2- 100% | 16.4 MiB/s | 488.2 KiB | 00m00s [157/192] Installing rpm-0:6.1.0-1.fc46 100% | 62.6 MiB/s | 2.5 MiB | 00m00s [158/192] Installing cmake-srpm-macros- 100% | 785.2 KiB/s | 804.0 B | 00m00s [159/192] Installing efi-srpm-macros-0: 100% | 40.3 MiB/s | 41.3 KiB | 00m00s [160/192] Installing java-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [161/192] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [162/192] Installing tree-sitter-srpm-m 100% | 1.9 MiB/s | 9.6 KiB | 00m00s [163/192] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [164/192] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [165/192] Installing rust-srpm-macros-0 100% | 0.0 B/s | 6.4 KiB | 00m00s [166/192] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 748.0 B | 00m00s [167/192] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [168/192] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [169/192] Installing package-notes-srpm 100% | 0.0 B/s | 2.1 KiB | 00m00s [170/192] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [171/192] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.1 KiB | 00m00s [172/192] Installing meson-srpm-macros- 100% | 0.0 B/s | 1.9 KiB | 00m00s [173/192] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [174/192] Installing gnome-srpm-macros- 100% | 0.0 B/s | 4.1 KiB | 00m00s [175/192] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [176/192] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [177/192] Installing gap-srpm-macros-0: 100% | 0.0 B/s | 2.7 KiB | 00m00s [178/192] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [179/192] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [180/192] Installing redhat-rpm-config- 100% | 93.0 MiB/s | 190.4 KiB | 00m00s [181/192] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [182/192] Installing rpm-build-0:6.1.0- 100% | 15.0 MiB/s | 322.1 KiB | 00m00s [183/192] Installing erlang-srpm-macros 100% | 0.0 B/s | 2.5 KiB | 00m00s [184/192] Installing pyproject-srpm-mac 100% | 0.0 B/s | 4.0 KiB | 00m00s [185/192] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [186/192] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 63.0 KiB | 00m00s [187/192] Installing R-srpm-macros-0:1. 100% | 0.0 B/s | 4.4 KiB | 00m00s [188/192] Installing python-srpm-macros 100% | 0.0 B/s | 52.9 KiB | 00m00s [189/192] Installing rpm-plugin-selinux 100% | 0.0 B/s | 12.9 KiB | 00m00s [190/192] Installing which-0:2.25-2.fc4 100% | 4.2 MiB/s | 85.8 KiB | 00m00s [191/192] Installing shadow-utils-2:4.2 100% | 112.7 MiB/s | 3.9 MiB | 00m00s [192/192] Installing info-0:7.3-3.fc45. 100% | 49.8 KiB/s | 372.8 KiB | 00m07s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: R-srpm-macros-1.3.7-3.fc45.noarch add-determinism-0.7.3-3.fc45.x86_64 alternatives-1.33-6.fc45.x86_64 ansible-srpm-macros-1-22.fc45.noarch audit-libs-4.2.1-2.fc45.x86_64 bash-5.3.15-2.fc45.x86_64 binutils-2.47.50-12.fc46.x86_64 build-reproducibility-srpm-macros-0.7.3-3.fc45.noarch bzip2-1.0.8-24.fc45.x86_64 bzip2-libs-1.0.8-24.fc45.x86_64 ca-certificates-2026.2.90_v9.0.317-1.fc46.noarch cmake-srpm-macros-4.3.0-5.fc45.noarch coreutils-9.12-1.fc46.x86_64 coreutils-common-9.12-1.fc46.x86_64 cpio-2.15-10.fc45.x86_64 crypto-policies-20260713-2.gitc42da77.fc45.noarch curl-8.23.0~rc2-1.fc46.x86_64 cyrus-sasl-lib-2.1.28-37.fc45.x86_64 debugedit-5.3-3.fc45.x86_64 diffutils-3.12-6.fc45.x86_64 dwz-0.17-3.fc45.x86_64 ed-1.22.6-1.fc46.x86_64 efi-srpm-macros-6-9.fc45.noarch elfutils-0.196-1.fc46.x86_64 elfutils-debuginfod-client-0.196-1.fc46.x86_64 elfutils-libelf-0.196-1.fc46.x86_64 elfutils-libs-0.196-1.fc46.x86_64 erlang-srpm-macros-0.3.11-2.fc45.noarch fedora-gpg-keys-46-0.3.noarch fedora-release-46-0.1.noarch fedora-release-common-46-0.1.noarch fedora-release-identity-basic-46-0.1.noarch fedora-repos-46-0.3.noarch fedora-repos-rawhide-46-0.3.noarch file-5.48-3.fc46.x86_64 file-libs-5.48-3.fc46.x86_64 filesystem-3.18-59.fc45.x86_64 filesystem-srpm-macros-3.18-59.fc45.noarch findutils-4.11.0-2.fc45.x86_64 fips-provider-1.5.3-1.fc46.x86_64 fonts-srpm-macros-5.0.0-4.fc45.noarch forge-srpm-macros-0.4.0-5.fc45.noarch fpc-srpm-macros-1.3-17.fc45.noarch gap-srpm-macros-2-3.fc45.noarch gawk-5.4.1-1.fc45.x86_64 gdb-minimal-17.2-6.fc46.x86_64 gdbm-libs-1.23-12.fc45.x86_64 ghc-srpm-macros-1.10-2.fc45.noarch glibc-2.44.9000-4.fc46.x86_64 glibc-common-2.44.9000-4.fc46.x86_64 glibc-gconv-extra-2.44.9000-4.fc46.x86_64 glibc-minimal-langpack-2.44.9000-4.fc46.x86_64 gmp-6.3.0-6.fc45.x86_64 gnat-srpm-macros-7-3.fc45.noarch gnome-srpm-macros-1.0-2.fc45.noarch gnulib-l10n-20241231-4.fc45.noarch gnupg2-2.4.9-18.fc45.x86_64 gnupg2-dirmngr-2.4.9-18.fc45.x86_64 gnupg2-gpg-agent-2.4.9-18.fc45.x86_64 gnupg2-gpgconf-2.4.9-18.fc45.x86_64 gnupg2-keyboxd-2.4.9-18.fc45.x86_64 gnupg2-verify-2.4.9-18.fc45.x86_64 gnutls-3.8.13-5.fc46.x86_64 go-srpm-macros-3.8.0-3.fc45.noarch gpg-pubkey-4f50a6114cd5c6976a7f1179655a4b02f577861e-6888bc98 gpg-pubkey-b2e766fa50ca6fa2d5ed06fc09d879e09488fb64-6a6b46b4 gpg-pubkey-d924b10d3e810dabdd8b56b596e7e91491211fce-697c9899 gpgverify-2.2-5.fc45.noarch grep-3.12-4.fc45.x86_64 gzip-1.14-4.fc45.x86_64 ima-evm-utils-libs-1.6.2-12.fc45.x86_64 info-7.3-3.fc45.x86_64 jansson-2.14-5.fc45.x86_64 java-srpm-macros-1-9.fc45.noarch json-c-0.18-9.fc45.x86_64 kernel-srpm-macros-1.0-30.fc45.noarch keyutils-libs-1.6.3-8.fc45.x86_64 krb5-libs-1.22.2-9.fc45.x86_64 libacl-2.4.0-2.fc45.x86_64 libarchive-3.8.9-2.fc46.x86_64 libassuan-2.5.7-6.fc45.x86_64 libattr-2.6.0-2.fc45.x86_64 libblkid-2.42.4-2.fc46.x86_64 libbrotli-1.2.0-6.fc45.x86_64 libcap-2.78-2.fc45.x86_64 libcap-ng-0.9.6-1.fc46.x86_64 libcbor-0.14.0-3.fc45.x86_64 libcom_err-1.47.4-2.fc45.x86_64 libcurl-8.23.0~rc2-1.fc46.x86_64 libeconf-0.7.9-4.fc45.x86_64 libevent-2.1.13-1.fc46.x86_64 libfdisk-2.42.4-2.fc46.x86_64 libffi-3.8.0-1.fc46.x86_64 libfido2-1.17.0-5.fc45.x86_64 libfsverity-1.7-4.fc45.x86_64 libgcc-16.2.1-2.fc46.1.x86_64 libgcrypt-1.12.4-1.fc46.x86_64 libgomp-16.2.1-2.fc46.1.x86_64 libgpg-error-1.61-2.fc45.x86_64 libidn2-2.3.8-4.fc45.x86_64 libksba-1.8.1-1.fc46.x86_64 liblastlog2-2.42.4-2.fc46.x86_64 libmount-2.42.4-2.fc46.x86_64 libnghttp2-1.69.0-6.fc46.x86_64 libnghttp3-1.18.0-1.fc45.x86_64 libpfm-4.13.0-23.fc45.x86_64 libpkgconf-2.5.1-2.fc45.x86_64 libpsl-0.23.3-1.fc46.x86_64 libselinux-3.11-5.fc46.x86_64 libselinux-utils-3.11-5.fc46.x86_64 libsemanage-3.11-4.fc46.x86_64 libsepol-3.11-2.fc45.x86_64 libsmartcols-2.42.4-2.fc46.x86_64 libssh-0.12.2-1.fc45.x86_64 libssh-config-0.12.2-1.fc45.noarch libstdc++-16.2.1-2.fc46.1.x86_64 libtasn1-4.21.0-2.fc45.x86_64 libtool-ltdl-2.6.2-1.fc46.x86_64 libunistring-1.1-12.fc45.x86_64 libusb1-1.0.30-2.fc45.x86_64 libuuid-2.42.4-2.fc46.x86_64 libverto-0.3.2-13.fc45.x86_64 libxcrypt-4.5.2-4.fc45.x86_64 libxml2-2.15.4-1.fc46.x86_64 libzstd-1.5.7-6.fc45.x86_64 linkdupes-0.7.3-3.fc45.x86_64 lua-libs-5.5.1-2.fc46.x86_64 lua-srpm-macros-1-18.fc45.noarch lz4-libs-1.10.0-5.fc45.x86_64 meson-srpm-macros-1.12.1-2.fc46.noarch mpfr-4.2.2-4.fc45.x86_64 ncurses-base-6.6-3.fc45.noarch ncurses-libs-6.6-3.fc45.x86_64 nettle-4.0-5.fc45.x86_64 ngtcp2-1.22.1-3.fc45.x86_64 ngtcp2-crypto-ossl-1.22.1-3.fc45.x86_64 npth-1.8-5.fc45.x86_64 ocaml-srpm-macros-11-4.fc45.noarch openblas-srpm-macros-2-22.fc45.noarch openldap-2.6.14-1.fc46.x86_64 openssl-libs-4.0.3-1.fc46.x86_64 p11-kit-0.26.5-1.fc45.x86_64 p11-kit-trust-0.26.5-1.fc45.x86_64 package-notes-srpm-macros-0.20-2.fc45.noarch pam-libs-1.7.2-4.fc45.x86_64 patch-2.8-6.fc46.x86_64 pcre2-10.47-1.fc45.2.x86_64 pcre2-syntax-10.47-1.fc45.2.noarch perl-srpm-macros-1-65.fc45.noarch pkgconf-2.5.1-2.fc45.x86_64 pkgconf-m4-2.5.1-2.fc45.noarch pkgconf-pkg-config-2.5.1-2.fc45.x86_64 policycoreutils-3.11-2.fc45.x86_64 popt-1.19-11.fc45.x86_64 publicsuffix-list-dafsa-20260624-2.fc45.noarch pyproject-srpm-macros-1.23.2-1.fc45.noarch python-srpm-macros-3.15-2.fc45.noarch qt5-srpm-macros-5.15.18-3.fc45.noarch qt6-srpm-macros-6.11.2-1.fc46.noarch readline-8.3-6.fc45.x86_64 redhat-rpm-config-345-4.fc46.noarch redhat-systemd-presets-102-3.fc45.noarch redhat-systemd-presets-common-102-3.fc45.noarch rpm-6.1.0-1.fc46.x86_64 rpm-build-6.1.0-1.fc46.x86_64 rpm-build-libs-6.1.0-1.fc46.x86_64 rpm-libs-6.1.0-1.fc46.x86_64 rpm-plugin-selinux-6.1.0-1.fc46.x86_64 rpm-sequoia-1.10.3-1.fc46.x86_64 rpm-sign-libs-6.1.0-1.fc46.x86_64 rust-srpm-macros-28.5-2.fc45.noarch sed-4.10-2.fc45.x86_64 selinux-policy-45.20-1.fc46.noarch selinux-policy-targeted-45.20-1.fc46.noarch setup-2.15.1-2.fc45.noarch shadow-utils-4.20.0-1.fc45.x86_64 sqlite-libs-3.53.4-1.fc45.x86_64 systemd-libs-262-3.fc46.x86_64 systemd-standalone-sysusers-262-3.fc46.x86_64 tar-1.35-9.fc45.x86_64 tpm2-tss-4.2.0-1.fc45.x86_64 tree-sitter-srpm-macros-0.4.6-2.fc45.noarch unzip-6.0-71.fc45.x86_64 util-linux-2.42.4-2.fc46.x86_64 util-linux-core-2.42.4-2.fc46.x86_64 which-2.25-2.fc45.x86_64 xxhash-libs-0.8.4-1.fc46.x86_64 xz-5.8.4-1.fc46.x86_64 xz-libs-5.8.4-1.fc46.x86_64 zig-srpm-macros-1-9.fc45.noarch zip-3.0-46.fc45.x86_64 zlib-ng-compat-2.3.3-6.fc45.x86_64 zstd-1.5.7-6.fc45.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790812800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-7.fc46.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1790965939.589153/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-hhn7x7xz/mrtrix3/mrtrix3.spec) Config(child) 0 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-7.fc46.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790965939.589153/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1790965939.589153/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1790965939.589153/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-6.1.0-1.fc46.x86_64 rpm-sequoia-1.10.3-1.fc46.x86_64 dnf5-5.4.6.0-1.fc46.x86_64 dnf5-plugins-5.4.6.0-1.fc46.x86_64 Finish: chroot init Start: build phase for mrtrix3-3.0.8-7.fc46.src.rpm Start: build setup for mrtrix3-3.0.8-7.fc46.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790812800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-7.fc46.src.rpm Updating and loading repositories: fedora 100% | 314.9 KiB/s | 23.0 KiB | 00m00s Copr repository 100% | 153.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: desktop-file-utils x86_64 0:0.28-8.fc45 fedora 222.2 KiB eigen3-devel noarch 0:5.0.1-4.fc45 fedora 9.5 MiB fftw-devel x86_64 0:3.3.10-18.fc45 fedora 283.1 KiB gcc-c++ x86_64 0:16.2.1-2.fc46.1 fedora 46.8 MiB git x86_64 0:2.55.0-2.fc45 fedora 57.7 KiB libappstream-glib x86_64 0:0.8.4-1.fc45 fedora 1.4 MiB libpng-devel x86_64 2:1.6.58-2.fc45 fedora 906.0 KiB libtiff-devel x86_64 0:4.7.2-2.fc45 fedora 885.0 KiB mesa-libGL-devel x86_64 0:26.2.3-1.fc46 fedora 80.8 KiB mesa-libGLU-devel x86_64 0:9.0.3-9.fc45 fedora 17.0 KiB python3 x86_64 0:3.15.0~rc2-1.fc46 fedora 28.7 KiB python3-devel x86_64 0:3.15.0~rc2-1.fc46 fedora 2.5 MiB qt5-qtbase-devel x86_64 0:5.15.18-5.fc45 fedora 19.0 MiB qt5-qtsvg-devel x86_64 0:5.15.18-3.fc45 fedora 83.6 KiB zlib-ng-compat-devel x86_64 0:2.3.3-6.fc45 fedora 107.0 KiB Installing dependencies: abattis-cantarell-vf-fonts noarch 0:0.301-18.fc45 fedora 192.7 KiB annobin-docs noarch 0:13.32-1.fc46 fedora 99.7 KiB annobin-plugin-gcc x86_64 0:13.32-1.fc46 fedora 724.5 KiB avahi-libs x86_64 0:0.9~rc2-9.fc45 fedora 171.3 KiB bubblewrap x86_64 0:0.12.0-1.fc46 fedora 139.9 KiB cairo x86_64 0:1.18.6-1.fc46 fedora 1.8 MiB cairo-gobject x86_64 0:1.18.6-1.fc46 fedora 31.0 KiB cmake x86_64 0:4.3.0-5.fc45 fedora 40.4 MiB cmake-data noarch 0:4.3.0-5.fc45 fedora 9.4 MiB cmake-filesystem x86_64 0:4.3.0-5.fc45 fedora 0.0 B cmake-rpm-macros noarch 0:4.3.0-5.fc45 fedora 8.4 KiB cpp x86_64 0:16.2.1-2.fc46.1 fedora 42.6 MiB cups-filesystem noarch 1:2.4.19-4.fc45 fedora 0.0 B cups-libs x86_64 1:2.4.19-4.fc45 fedora 638.7 KiB dbus-libs x86_64 1:1.16.2-6.fc45 fedora 357.4 KiB default-fonts-core-sans noarch 0:4.3-3.fc45 fedora 11.9 KiB double-conversion x86_64 0:3.4.0-4.fc45 fedora 101.8 KiB duktape x86_64 0:2.7.0-12.fc45 fedora 623.7 KiB emacs-filesystem x86_64 1:31.1-1.fc46 fedora 0.0 B expat x86_64 0:2.8.3-1.fc46 fedora 338.4 KiB fftw x86_64 0:3.3.10-18.fc45 fedora 181.5 KiB fftw-libs x86_64 0:3.3.10-18.fc45 fedora 0.0 B fftw-libs-double x86_64 0:3.3.10-18.fc45 fedora 3.4 MiB fftw-libs-long x86_64 0:3.3.10-18.fc45 fedora 1.5 MiB fftw-libs-quad x86_64 0:3.3.10-18.fc45 fedora 2.5 MiB fftw-libs-single x86_64 0:3.3.10-18.fc45 fedora 3.6 MiB fontconfig x86_64 0:2.18.3-2.fc46 fedora 1.0 MiB fonts-filesystem noarch 1:5.0.0-4.fc45 fedora 0.0 B freetype x86_64 0:2.14.3-2.fc45 fedora 918.3 KiB fribidi x86_64 0:1.0.17-2.fc46 fedora 394.5 KiB gcc x86_64 0:16.2.1-2.fc46.1 fedora 121.8 MiB gcc-plugin-annobin x86_64 0:16.2.1-2.fc46.1 fedora 57.1 KiB gdk-pixbuf2 x86_64 0:2.44.8-3.fc46 fedora 2.6 MiB git-core x86_64 0:2.55.0-2.fc45 fedora 25.5 MiB git-core-doc noarch 0:2.55.0-2.fc45 fedora 18.9 MiB glib2 x86_64 0:2.90.0-1.fc46 fedora 15.3 MiB glibc-devel x86_64 0:2.44.9000-4.fc46 fedora 2.3 MiB glx-utils x86_64 0:9.0.0-12.fc45 fedora 418.1 KiB glycin-libs x86_64 0:2.2.1-1.fc46 fedora 4.7 MiB glycin-loaders x86_64 0:2.2.1-1.fc46 fedora 14.7 MiB google-noto-fonts-common noarch 0:20260901-4.fc46 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 0:20260901-4.fc46 fedora 1.4 MiB graphite2 x86_64 0:1.3.14-22.fc45 fedora 191.4 KiB groff-base x86_64 0:1.24.2-1.fc46 fedora 4.2 MiB harfbuzz x86_64 0:14.5.0-1.fc46 fedora 3.0 MiB highway x86_64 0:1.3.0-3.fc45 fedora 5.6 MiB hwdata noarch 0:0.411-1.fc46 fedora 10.1 MiB jbigkit-libs x86_64 0:2.1-34.fc45 fedora 117.2 KiB json-glib x86_64 0:1.10.8-11.fc45 fedora 596.2 KiB jsoncpp x86_64 0:1.9.6-3.fc44 fedora 285.6 KiB kernel-headers x86_64 0:7.3.0-0.rc5.45.fc46 fedora 7.1 MiB less x86_64 0:710-1.fc46 fedora 488.7 KiB libICE x86_64 0:1.1.2-5.fc45 fedora 198.4 KiB libSM x86_64 0:1.2.5-5.fc45 fedora 100.9 KiB libX11 x86_64 0:1.8.13-3.fc46 fedora 1.3 MiB libX11-common noarch 0:1.8.13-3.fc46 fedora 1.1 MiB libX11-devel x86_64 0:1.8.13-3.fc46 fedora 1.0 MiB libX11-xcb x86_64 0:1.8.13-3.fc46 fedora 10.8 KiB libXau x86_64 0:1.0.12-5.fc45 fedora 72.8 KiB libXau-devel x86_64 0:1.0.12-5.fc45 fedora 7.3 KiB libXext x86_64 0:1.3.6-6.fc45 fedora 89.9 KiB libXft x86_64 0:2.3.8-11.fc45 fedora 168.3 KiB libXrender x86_64 0:0.9.12-5.fc45 fedora 49.9 KiB libXxf86vm x86_64 0:1.1.6-5.fc45 fedora 25.1 KiB libaom x86_64 0:3.13.3-3.fc45 fedora 5.1 MiB libatomic x86_64 0:16.2.1-2.fc46.1 fedora 45.6 KiB libdatrie x86_64 0:0.2.14-3.fc45 fedora 57.7 KiB libdav1d x86_64 0:1.5.4-1.fc46 fedora 1.8 MiB libdrm x86_64 0:2.4.134-2.fc45 fedora 405.9 KiB libdrm-devel x86_64 0:2.4.134-2.fc45 fedora 743.6 KiB libedit x86_64 0:3.1-60.20260512cvs.fc45 fedora 248.3 KiB libevdev x86_64 0:1.13.7-1.fc46 fedora 85.9 KiB libglvnd x86_64 1:1.7.0-10.fc45 fedora 526.1 KiB libglvnd-core-devel x86_64 1:1.7.0-10.fc45 fedora 40.3 KiB libglvnd-devel x86_64 1:1.7.0-10.fc45 fedora 2.1 MiB libglvnd-egl x86_64 1:1.7.0-10.fc45 fedora 68.6 KiB libglvnd-gles x86_64 1:1.7.0-10.fc45 fedora 89.7 KiB libglvnd-glx x86_64 1:1.7.0-10.fc45 fedora 597.1 KiB libglvnd-opengl x86_64 1:1.7.0-10.fc45 fedora 144.7 KiB libgudev x86_64 0:238-10.fc45 fedora 87.6 KiB libheif x86_64 0:1.23.5-4.fc46 fedora 2.4 MiB libicu x86_64 0:78.3-8.fc45 fedora 37.8 MiB libinput x86_64 0:1.32.0-1.fc46 fedora 712.6 KiB libjpeg-turbo x86_64 0:3.1.4.1-2.fc45 fedora 821.8 KiB libjpeg-turbo-devel x86_64 0:3.1.4.1-2.fc45 fedora 354.2 KiB libjxl x86_64 1:0.11.2-2.fc45 fedora 4.1 MiB liblerc x86_64 0:4.2.0-1.fc45 fedora 661.1 KiB liblerc-devel x86_64 0:4.2.0-1.fc45 fedora 4.3 MiB libmpc x86_64 0:1.4.1-2.fc45 fedora 168.8 KiB libopenjph x86_64 0:0.31.0-1.fc46 fedora 510.4 KiB libpciaccess x86_64 0:0.16-18.fc45 fedora 48.4 KiB libpciaccess-devel x86_64 0:0.16-18.fc45 fedora 15.3 KiB libpng x86_64 2:1.6.58-2.fc45 fedora 253.7 KiB libproxy x86_64 0:0.5.12-3.fc45 fedora 106.1 KiB libquadmath x86_64 0:16.2.1-2.fc46.1 fedora 321.9 KiB librsvg2 x86_64 0:2.63.2-1.fc46 fedora 5.0 MiB libseccomp x86_64 0:2.6.1-3.fc45 fedora 222.2 KiB libstdc++-devel x86_64 0:16.2.1-2.fc46.1 fedora 41.2 MiB libthai x86_64 0:0.1.30-3.fc45 fedora 800.9 KiB libtiff x86_64 0:4.7.2-2.fc45 fedora 636.4 KiB libuv x86_64 1:1.52.1-2.fc45 fedora 593.2 KiB libvmaf x86_64 0:3.2.1-1.fc46 fedora 1.2 MiB libwacom x86_64 0:2.20.0-1.fc46 fedora 106.1 KiB libwacom-data noarch 0:2.20.0-1.fc46 fedora 1.4 MiB libwayland-client x86_64 0:1.26.0-3.fc46 fedora 66.0 KiB libwebp x86_64 0:1.6.0-4.fc45 fedora 968.1 KiB libwebp-devel x86_64 0:1.6.0-4.fc45 fedora 121.7 KiB libxcb x86_64 0:1.17.0-8.fc45 fedora 1.1 MiB libxcb-devel x86_64 0:1.17.0-8.fc45 fedora 2.6 MiB libxcrypt-devel x86_64 0:4.5.2-4.fc45 fedora 31.0 KiB libxkbcommon x86_64 0:1.13.1-4.fc46 fedora 432.2 KiB libxkbcommon-x11 x86_64 0:1.13.1-4.fc46 fedora 39.5 KiB libxshmfence x86_64 0:1.3.2-9.fc45 fedora 12.3 KiB libzstd-devel x86_64 0:1.5.7-6.fc45 fedora 217.6 KiB llvm-filesystem x86_64 0:23.1.2-1.fc46 fedora 0.0 B llvm-libs x86_64 0:23.1.2-1.fc46 fedora 146.1 MiB lm_sensors-libs x86_64 0:3.6.0-25.fc45 fedora 89.7 KiB lzo x86_64 0:2.10-17.fc45 fedora 178.8 KiB make x86_64 1:4.4.1-13.fc45 fedora 1.8 MiB mesa-dri-drivers x86_64 0:26.2.3-1.fc46 fedora 53.2 MiB mesa-filesystem x86_64 0:26.2.3-1.fc46 fedora 3.6 KiB mesa-libEGL x86_64 0:26.2.3-1.fc46 fedora 398.5 KiB mesa-libGL x86_64 0:26.2.3-1.fc46 fedora 378.4 KiB mesa-libGLU x86_64 0:9.0.3-9.fc45 fedora 369.7 KiB mesa-libgbm x86_64 0:26.2.3-1.fc46 fedora 19.5 KiB mpdecimal x86_64 0:4.0.1-4.fc45 fedora 221.2 KiB mtdev x86_64 0:1.1.6-13.fc45 fedora 29.1 KiB ncurses x86_64 0:6.6-3.fc45 fedora 611.5 KiB ninja-build x86_64 0:1.13.2-6.fc45 fedora 497.5 KiB noopenh264 x86_64 0:2.6.0-5.fc45 fedora 39.0 KiB openjpeg x86_64 0:2.5.4-4.fc45 fedora 464.2 KiB openssh x86_64 0:10.5p1-1.fc46 fedora 1.6 MiB openssh-clients x86_64 0:10.5p1-1.fc46 fedora 2.6 MiB pango x86_64 0:1.58.2-1.fc45 fedora 1.0 MiB pcre2-utf16 x86_64 0:10.47-1.fc45.2 fedora 655.2 KiB perl-AutoLoader noarch 0:5.74-527.fc45 fedora 20.6 KiB perl-B x86_64 0:1.92-527.fc45 fedora 513.5 KiB perl-Carp noarch 0:1.54-527.fc45 fedora 46.6 KiB perl-Class-Struct noarch 0:0.68-527.fc45 fedora 25.4 KiB perl-Data-Dumper x86_64 0:2.192-528.fc45 fedora 115.5 KiB perl-Digest noarch 0:1.20-527.fc45 fedora 35.2 KiB perl-Digest-MD5 x86_64 0:2.59-527.fc45 fedora 59.5 KiB perl-DynaLoader x86_64 0:1.57-527.fc45 fedora 32.1 KiB perl-Encode x86_64 4:3.24-527.fc45 fedora 4.7 MiB perl-English noarch 0:1.12-527.fc45 fedora 6.2 KiB perl-Errno x86_64 0:1.39-527.fc45 fedora 8.4 KiB perl-Error noarch 1:0.17030-4.fc45 fedora 76.8 KiB perl-Exporter noarch 0:5.79-527.fc45 fedora 54.2 KiB perl-Fcntl x86_64 0:1.20-527.fc45 fedora 44.7 KiB perl-File-Basename noarch 0:2.86-527.fc45 fedora 14.0 KiB perl-File-Find noarch 0:1.44-527.fc45 fedora 42.0 KiB perl-File-Path noarch 0:2.18-527.fc45 fedora 63.4 KiB perl-File-Temp noarch 1:0.231.200-527.fc45 fedora 163.7 KiB perl-File-stat noarch 0:1.15-527.fc45 fedora 13.7 KiB perl-FileHandle noarch 0:2.05-527.fc45 fedora 9.4 KiB perl-Getopt-Long noarch 1:2.58-527.fc45 fedora 144.5 KiB perl-Getopt-Std noarch 0:1.15-527.fc45 fedora 12.5 KiB perl-Git noarch 0:2.55.0-2.fc45 fedora 64.4 KiB perl-HTTP-Tiny noarch 0:0.096-528.fc45 fedora 162.4 KiB perl-IO x86_64 0:1.56-527.fc45 fedora 147.3 KiB perl-IO-Socket-IP noarch 0:0.44-527.fc45 fedora 100.5 KiB perl-IO-Socket-SSL noarch 0:2.099-2.fc45 fedora 726.9 KiB perl-IPC-Open3 noarch 0:1.24-527.fc45 fedora 27.7 KiB perl-MIME-Base32 noarch 0:1.303-26.fc45 fedora 30.7 KiB perl-MIME-Base64 x86_64 0:3.16-527.fc45 fedora 41.9 KiB perl-Net-SSLeay x86_64 0:1.96-5.fc45 fedora 1.3 MiB perl-POSIX x86_64 0:2.26-527.fc45 fedora 229.3 KiB perl-PathTools x86_64 0:3.95-527.fc45 fedora 180.0 KiB perl-Pod-Escapes noarch 1:1.07-527.fc45 fedora 24.9 KiB perl-Pod-Perldoc noarch 0:3.28.01-527.fc45 fedora 163.8 KiB perl-Pod-Simple noarch 1:3.48-527.fc45 fedora 565.2 KiB perl-Pod-Usage noarch 4:2.05-527.fc45 fedora 86.3 KiB perl-Scalar-List-Utils x86_64 5:1.70-527.fc45 fedora 144.8 KiB perl-SelectSaver noarch 0:1.03-527.fc45 fedora 2.1 KiB perl-Socket x86_64 4:2.043-1.fc46 fedora 121.7 KiB perl-Storable x86_64 1:3.41-527.fc45 fedora 234.9 KiB perl-Symbol noarch 0:1.09-527.fc45 fedora 6.8 KiB perl-Term-ANSIColor noarch 0:5.01-527.fc45 fedora 97.5 KiB perl-Term-Cap noarch 0:1.18-527.fc45 fedora 29.3 KiB perl-TermReadKey x86_64 0:2.38-29.fc45 fedora 63.8 KiB perl-Text-ParseWords noarch 0:3.31-527.fc45 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 0:2024.001-527.fc45 fedora 22.6 KiB perl-Time-HiRes x86_64 4:1.9780-527.fc45 fedora 115.6 KiB perl-Time-Local noarch 2:1.350-527.fc45 fedora 69.0 KiB perl-URI noarch 0:5.37-1.fc46 fedora 275.5 KiB perl-Unicode-Normalize x86_64 0:1.32-527.fc45 fedora 486.1 KiB perl-base noarch 0:2.27-527.fc45 fedora 12.6 KiB perl-constant noarch 0:1.33-528.fc45 fedora 26.3 KiB perl-if noarch 0:0.61.000-527.fc45 fedora 5.8 KiB perl-interpreter x86_64 4:5.44.0-527.fc45 fedora 119.8 KiB perl-lib x86_64 0:0.65-527.fc45 fedora 8.5 KiB perl-libnet noarch 0:3.15-528.fc45 fedora 288.4 KiB perl-libs x86_64 4:5.44.0-527.fc45 fedora 12.0 MiB perl-locale noarch 0:1.13-527.fc45 fedora 6.1 KiB perl-mro x86_64 0:1.30-527.fc45 fedora 41.4 KiB perl-overload noarch 0:1.40-527.fc45 fedora 71.6 KiB perl-overloading noarch 0:0.03-527.fc45 fedora 4.8 KiB perl-parent noarch 1:0.244-527.fc45 fedora 10.3 KiB perl-podlators noarch 1:6.1.1-1.fc46 fedora 327.2 KiB perl-vars noarch 0:1.05-527.fc45 fedora 3.9 KiB pixman x86_64 0:0.46.2-4.fc45 fedora 718.3 KiB pyproject-rpm-macros noarch 0:1.23.2-1.fc45 fedora 156.3 KiB python-pip-wheel noarch 0:26.2.1-1.fc46 fedora 1.3 MiB python-rpm-macros noarch 0:3.15-2.fc45 fedora 28.0 KiB python3-libs x86_64 0:3.15.0~rc2-1.fc46 fedora 48.2 MiB python3-packaging noarch 0:26.3-1.fc46 fedora 1.3 MiB python3-rpm-generators noarch 0:14-35.fc46 fedora 81.9 KiB python3-rpm-macros noarch 0:3.15-2.fc45 fedora 6.5 KiB qt-settings noarch 0:44.0-1.fc46 fedora 1.1 KiB qt5-filesystem x86_64 0:5.15.18-3.fc45 fedora 0.0 B qt5-qtbase x86_64 0:5.15.18-5.fc45 fedora 9.9 MiB qt5-qtbase-common noarch 0:5.15.18-5.fc45 fedora 78.0 B qt5-qtbase-gui x86_64 0:5.15.18-5.fc45 fedora 20.4 MiB qt5-qtsvg x86_64 0:5.15.18-3.fc45 fedora 631.0 KiB qt5-rpm-macros noarch 0:5.15.18-3.fc45 fedora 1.6 KiB rav1e-libs x86_64 0:0.8.1-5.fc46 fedora 3.0 MiB rhash x86_64 0:1.4.5-5.fc45 fedora 354.8 KiB shared-mime-info x86_64 0:2.5.1-3.fc46 fedora 6.6 MiB spirv-tools-libs x86_64 0:2026.3-1.fc46 fedora 6.4 MiB svt-av1-libs x86_64 0:3.1.2-3.fc45 fedora 5.6 MiB tzdata noarch 0:2026c-2.fc46 fedora 1.2 MiB vim-filesystem noarch 2:9.2.1129-1.fc46 fedora 40.0 B vulkan-headers noarch 0:1.4.357.0-1.fc46 fedora 39.7 MiB vulkan-loader x86_64 0:1.4.357.0-1.fc46 fedora 598.7 KiB vulkan-loader-devel x86_64 0:1.4.357.0-1.fc46 fedora 8.0 KiB xcb-util x86_64 0:0.4.1-10.fc45 fedora 26.2 KiB xcb-util-image x86_64 0:0.4.1-10.fc45 fedora 26.0 KiB xcb-util-keysyms x86_64 0:0.4.1-10.fc45 fedora 16.5 KiB xcb-util-renderutil x86_64 0:0.3.10-10.fc45 fedora 24.2 KiB xcb-util-wm x86_64 0:0.4.2-10.fc45 fedora 77.0 KiB xkeyboard-config noarch 0:2.48-4.fc45 fedora 6.4 MiB xml-common noarch 0:0.6.3-70.fc46 fedora 78.4 KiB xorg-x11-proto-devel noarch 0:2025.1-3.fc45 fedora 1.8 MiB Transaction Summary: Installing: 248 packages Total size of inbound packages is 262 MiB. Need to download 262 MiB. After this operation, 947 MiB extra will be used (install 947 MiB, remove 0 B). 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[180/248] libaom-0:3.13.3-3.fc45.x86_64 100% | 171.2 MiB/s | 1.9 MiB | 00m00s [181/248] libdav1d-0:1.5.4-1.fc46.x86_6 100% | 64.9 MiB/s | 664.3 KiB | 00m00s [182/248] libopenjph-0:0.31.0-1.fc46.x8 100% | 17.2 MiB/s | 176.4 KiB | 00m00s [183/248] noopenh264-0:2.6.0-5.fc45.x86 100% | 7.0 MiB/s | 21.6 KiB | 00m00s [184/248] openjpeg-0:2.5.4-4.fc45.x86_6 100% | 64.0 MiB/s | 196.7 KiB | 00m00s [185/248] rav1e-libs-0:0.8.1-5.fc46.x86 100% | 208.8 MiB/s | 1.0 MiB | 00m00s [186/248] svt-av1-libs-0:3.1.2-3.fc45.x 100% | 202.2 MiB/s | 2.0 MiB | 00m00s [187/248] highway-0:1.3.0-3.fc45.x86_64 100% | 62.6 MiB/s | 705.1 KiB | 00m00s [188/248] cairo-gobject-0:1.18.6-1.fc46 100% | 2.0 MiB/s | 16.7 KiB | 00m00s [189/248] pango-0:1.58.2-1.fc45.x86_64 100% | 90.0 MiB/s | 368.6 KiB | 00m00s [190/248] libxshmfence-0:1.3.2-9.fc45.x 100% | 4.3 MiB/s | 13.1 KiB | 00m00s [191/248] lm_sensors-libs-0:3.6.0-25.fc 100% | 3.1 MiB/s | 41.4 KiB | 00m00s [192/248] mesa-filesystem-0:26.2.3-1.fc 100% | 1.1 MiB/s | 14.5 KiB | 00m00s [193/248] spirv-tools-libs-0:2026.3-1.f 100% | 131.2 MiB/s | 1.8 MiB | 00m00s [194/248] google-noto-fonts-common-0:20 100% | 1.2 MiB/s | 16.7 KiB | 00m00s [195/248] perl-IO-Socket-IP-0:0.44-527. 100% | 3.7 MiB/s | 42.0 KiB | 00m00s [196/248] perl-URI-0:5.37-1.fc46.noarch 100% | 10.5 MiB/s | 151.0 KiB | 00m00s [197/248] libvmaf-0:3.2.1-1.fc46.x86_64 100% | 38.7 MiB/s | 316.9 KiB | 00m00s [198/248] perl-AutoLoader-0:5.74-527.fc 100% | 1.1 MiB/s | 20.9 KiB | 00m00s [199/248] fribidi-0:1.0.17-2.fc46.x86_6 100% | 11.1 MiB/s | 101.8 KiB | 00m00s [200/248] libXft-0:2.3.8-11.fc45.x86_64 100% | 7.2 MiB/s | 73.7 KiB | 00m00s [201/248] libthai-0:0.1.30-3.fc45.x86_6 100% | 21.1 MiB/s | 216.1 KiB | 00m00s [202/248] llvm-filesystem-0:23.1.2-1.fc 100% | 1.3 MiB/s | 13.1 KiB | 00m00s [203/248] perl-Data-Dumper-0:2.192-528. 100% | 3.1 MiB/s | 56.4 KiB | 00m00s [204/248] perl-MIME-Base32-0:1.303-26.f 100% | 973.8 KiB/s | 20.4 KiB | 00m00s [205/248] perl-Unicode-Normalize-0:1.32 100% | 3.4 MiB/s | 73.8 KiB | 00m00s [206/248] perl-libnet-0:3.15-528.fc45.n 100% | 7.0 MiB/s | 128.3 KiB | 00m00s [207/248] libdatrie-0:0.2.14-3.fc45.x86 100% | 4.6 MiB/s | 32.9 KiB | 00m00s [208/248] perl-B-0:1.92-527.fc45.x86_64 100% | 11.8 MiB/s | 181.8 KiB | 00m00s [209/248] perl-Digest-MD5-0:2.59-527.fc 100% | 2.0 MiB/s | 35.6 KiB | 00m00s [210/248] llvm-libs-0:23.1.2-1.fc46.x86 100% | 205.6 MiB/s | 36.2 MiB | 00m00s [211/248] perl-FileHandle-0:2.05-527.fc 100% | 399.7 KiB/s | 15.2 KiB | 00m00s [212/248] perl-Digest-0:1.20-527.fc45.n 100% | 688.0 KiB/s | 24.8 KiB | 00m00s [213/248] jsoncpp-0:1.9.6-3.fc44.x86_64 100% | 21.5 MiB/s | 110.0 KiB | 00m00s [214/248] libuv-1:1.52.1-2.fc45.x86_64 100% | 44.6 MiB/s | 274.1 KiB | 00m00s [215/248] cmake-data-0:4.3.0-5.fc45.noa 100% | 148.9 MiB/s | 2.7 MiB | 00m00s [216/248] rhash-0:1.4.5-5.fc45.x86_64 100% | 28.1 MiB/s | 201.7 KiB | 00m00s [217/248] vim-filesystem-2:9.2.1129-1.f 100% | 2.5 MiB/s | 15.6 KiB | 00m00s [218/248] glx-utils-0:9.0.0-12.fc45.x86 100% | 17.1 MiB/s | 69.9 KiB | 00m00s [219/248] vulkan-loader-devel-0:1.4.357 100% | 4.0 MiB/s | 12.3 KiB | 00m00s [220/248] vulkan-headers-0:1.4.357.0-1. 100% | 145.6 MiB/s | 1.7 MiB | 00m00s [221/248] vulkan-loader-0:1.4.357.0-1.f 100% | 18.4 MiB/s | 169.3 KiB | 00m00s [222/248] perl-Encode-4:3.24-527.fc45.x 100% | 117.0 MiB/s | 1.1 MiB | 00m00s [223/248] perl-Getopt-Std-0:1.15-527.fc 100% | 1.7 MiB/s | 15.4 KiB | 00m00s [224/248] perl-Storable-1:3.41-527.fc45 100% | 24.6 MiB/s | 100.6 KiB | 00m00s [225/248] libdrm-devel-0:2.4.134-2.fc45 100% | 30.5 MiB/s | 187.7 KiB | 00m00s [226/248] cmake-0:4.3.0-5.fc45.x86_64 100% | 205.9 MiB/s | 14.4 MiB | 00m00s [227/248] libjpeg-turbo-devel-0:3.1.4.1 100% | 5.3 MiB/s | 97.4 KiB | 00m00s [228/248] liblerc-devel-0:4.2.0-1.fc45. 100% | 140.0 MiB/s | 3.2 MiB | 00m00s [229/248] libzstd-devel-0:1.5.7-6.fc45. 100% | 7.8 MiB/s | 56.3 KiB | 00m00s [230/248] libwebp-devel-0:1.6.0-4.fc45. 100% | 4.8 MiB/s | 39.1 KiB | 00m00s [231/248] libxcb-devel-0:1.17.0-8.fc45. 100% | 115.7 MiB/s | 1.5 MiB | 00m00s [232/248] kernel-headers-0:7.3.0-0.rc5. 100% | 110.2 MiB/s | 1.8 MiB | 00m00s [233/248] glibc-devel-0:2.44.9000-4.fc4 100% | 131.9 MiB/s | 675.3 KiB | 00m00s [234/248] libpciaccess-devel-0:0.16-18. 100% | 457.8 KiB/s | 12.4 KiB | 00m00s [235/248] libxcrypt-devel-0:4.5.2-4.fc4 100% | 4.2 MiB/s | 30.4 KiB | 00m00s [236/248] libatomic-0:16.2.1-2.fc46.1.x 100% | 13.6 MiB/s | 55.7 KiB | 00m00s [237/248] libXau-devel-0:1.0.12-5.fc45. 100% | 2.3 MiB/s | 13.9 KiB | 00m00s [238/248] annobin-plugin-gcc-0:13.32-1. 100% | 57.8 MiB/s | 710.1 KiB | 00m00s [239/248] libstdc++-devel-0:16.2.1-2.fc 100% | 149.4 MiB/s | 6.0 MiB | 00m00s [240/248] gcc-plugin-annobin-0:16.2.1-2 100% | 3.4 MiB/s | 59.5 KiB | 00m00s [241/248] annobin-docs-0:13.32-1.fc46.n 100% | 8.5 MiB/s | 87.1 KiB | 00m00s [242/248] python-rpm-macros-0:3.15-2.fc 100% | 9.7 MiB/s | 19.8 KiB | 00m00s [243/248] pyproject-rpm-macros-0:1.23.2 100% | 17.9 MiB/s | 54.8 KiB | 00m00s [244/248] python3-rpm-generators-0:14-3 100% | 9.4 MiB/s | 28.8 KiB | 00m00s [245/248] python3-rpm-macros-0:3.15-2.f 100% | 2.0 MiB/s | 12.2 KiB | 00m00s [246/248] cmake-rpm-macros-0:4.3.0-5.fc 100% | 2.2 MiB/s | 13.7 KiB | 00m00s [247/248] python3-packaging-0:26.3-1.fc 100% | 41.0 MiB/s | 293.6 KiB | 00m00s [248/248] ninja-build-0:1.13.2-6.fc45.x 100% | 49.6 MiB/s | 203.1 KiB | 00m00s -------------------------------------------------------------------------------- [248/248] Total 100% | 214.2 MiB/s | 261.7 MiB | 00m01s Running transaction [ 1/250] Verify package files 100% | 251.0 B/s | 248.0 B | 00m01s [ 2/250] Prepare transaction 100% | 1.7 KiB/s | 248.0 B | 00m00s [ 3/250] Installing glib2-0:2.90.0-1.f 100% | 243.5 MiB/s | 15.3 MiB | 00m00s [ 4/250] Installing cmake-filesystem-0 100% | 4.6 MiB/s | 9.4 KiB | 00m00s [ 5/250] Installing expat-0:2.8.3-1.fc 100% | 17.5 MiB/s | 340.5 KiB | 00m00s [ 6/250] Installing libX11-xcb-0:1.8.1 100% | 11.4 MiB/s | 11.7 KiB | 00m00s [ 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| 00m00s [ 20/250] Installing libxcrypt-devel-0: 100% | 32.5 MiB/s | 33.3 KiB | 00m00s [ 21/250] Installing vim-filesystem-2:9 100% | 4.7 MiB/s | 4.8 KiB | 00m00s [ 22/250] Installing libdav1d-0:1.5.4-1 100% | 352.7 MiB/s | 1.8 MiB | 00m00s [ 23/250] Installing libXau-0:1.0.12-5. 100% | 72.6 MiB/s | 74.3 KiB | 00m00s [ 24/250] Installing libxcb-0:1.17.0-8. 100% | 216.3 MiB/s | 1.1 MiB | 00m00s [ 25/250] Installing libevdev-0:1.13.7- 100% | 85.0 MiB/s | 87.0 KiB | 00m00s [ 26/250] Installing xorg-x11-proto-dev 100% | 256.5 MiB/s | 1.8 MiB | 00m00s [ 27/250] Installing libedit-0:3.1-60.2 100% | 244.1 MiB/s | 250.0 KiB | 00m00s [ 28/250] Installing libICE-0:1.1.2-5.f 100% | 195.1 MiB/s | 199.8 KiB | 00m00s [ 29/250] Installing dbus-libs-1:1.16.2 100% | 350.0 MiB/s | 358.4 KiB | 00m00s [ 30/250] Installing liblerc-0:4.2.0-1. 100% | 323.5 MiB/s | 662.6 KiB | 00m00s [ 31/250] Installing make-1:4.4.1-13.fc 100% | 75.2 MiB/s | 1.8 MiB | 00m00s [ 32/250] Installing fftw-libs-single-0 100% | 361.9 MiB/s | 3.6 MiB | 00m00s [ 33/250] Installing fftw-libs-long-0:3 100% | 309.6 MiB/s | 1.5 MiB | 00m00s [ 34/250] Installing fftw-libs-double-0 100% | 380.0 MiB/s | 3.4 MiB | 00m00s [ 35/250] Installing emacs-filesystem-1 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 36/250] Installing liblerc-devel-0:4. 100% | 481.6 MiB/s | 4.3 MiB | 00m00s [ 37/250] Installing avahi-libs-0:0.9~r 100% | 169.7 MiB/s | 173.8 KiB | 00m00s [ 38/250] Installing libSM-0:1.2.5-5.fc 100% | 99.9 MiB/s | 102.3 KiB | 00m00s [ 39/250] Installing libXau-devel-0:1.0 100% | 1.5 MiB/s | 9.1 KiB | 00m00s [ 40/250] Installing libxcb-devel-0:1.1 100% | 86.2 MiB/s | 3.0 MiB | 00m00s [ 41/250] Installing xcb-util-keysyms-0 100% | 0.0 B/s | 17.7 KiB | 00m00s [ 42/250] Installing xcb-util-renderuti 100% | 0.0 B/s | 25.7 KiB | 00m00s [ 43/250] Installing xcb-util-wm-0:0.4. 100% | 77.1 MiB/s | 79.0 KiB | 00m00s [ 44/250] Installing xcb-util-0:0.4.1-1 100% | 0.0 B/s | 27.6 KiB | 00m00s [ 45/250] Installing xcb-util-image-0:0 100% | 0.0 B/s | 27.5 KiB | 00m00s [ 46/250] Installing mesa-libGLU-0:9.0. 100% | 361.9 MiB/s | 370.5 KiB | 00m00s [ 47/250] Installing pyproject-rpm-macr 100% | 154.9 MiB/s | 158.6 KiB | 00m00s [ 48/250] Installing cpp-0:16.2.1-2.fc4 100% | 291.7 MiB/s | 42.6 MiB | 00m00s [ 49/250] Installing libwebp-devel-0:1. 100% | 122.4 MiB/s | 125.4 KiB | 00m00s [ 50/250] Installing abattis-cantarell- 100% | 189.9 MiB/s | 194.4 KiB | 00m00s [ 51/250] Installing libjpeg-turbo-deve 100% | 348.4 MiB/s | 356.7 KiB | 00m00s [ 52/250] Installing libzstd-devel-0:1. 100% | 214.0 MiB/s | 219.1 KiB | 00m00s [ 53/250] Installing json-glib-0:1.10.8 100% | 148.5 MiB/s | 608.3 KiB | 00m00s [ 54/250] Installing libgudev-0:238-10. 100% | 87.1 MiB/s | 89.2 KiB | 00m00s [ 55/250] Installing annobin-docs-0:13. 100% | 98.5 MiB/s | 100.8 KiB | 00m00s [ 56/250] Installing libatomic-0:16.2.1 100% | 45.6 MiB/s | 46.7 KiB | 00m00s [ 57/250] Installing gcc-0:16.2.1-2.fc4 100% | 340.5 MiB/s | 121.9 MiB | 00m00s [ 58/250] Installing libstdc++-devel-0: 100% | 430.5 MiB/s | 41.3 MiB | 00m00s [ 59/250] Installing gcc-c++-0:16.2.1-2 100% | 290.9 MiB/s | 46.8 MiB | 00m00s [ 60/250] Installing vulkan-loader-0:1. 100% | 195.7 MiB/s | 601.3 KiB | 00m00s [ 61/250] Installing rhash-0:1.4.5-5.fc 100% | 17.6 MiB/s | 360.1 KiB | 00m00s [ 62/250] Installing libuv-1:1.52.1-2.f 100% | 291.0 MiB/s | 596.0 KiB | 00m00s [ 63/250] Installing jsoncpp-0:1.9.6-3. 100% | 280.4 MiB/s | 287.1 KiB | 00m00s [ 64/250] Installing libdatrie-0:0.2.14 100% | 57.5 MiB/s | 58.8 KiB | 00m00s [ 65/250] Installing libthai-0:0.1.30-3 100% | 261.3 MiB/s | 802.7 KiB | 00m00s [ 66/250] Installing llvm-filesystem-0: 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 67/250] Installing llvm-libs-0:23.1.2 100% | 377.6 MiB/s | 146.1 MiB | 00m00s [ 68/250] Installing fribidi-0:1.0.17-2 100% | 19.4 MiB/s | 397.2 KiB | 00m00s [ 69/250] Installing libvmaf-0:3.2.1-1. 100% | 396.8 MiB/s | 1.2 MiB | 00m00s [ 70/250] Installing libaom-0:3.13.3-3. 100% | 363.6 MiB/s | 5.1 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eigen3-devel-0:5.0 100% | 21.2 MiB/s | 9.6 MiB | 00m00s Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790812800 Wrote: /builddir/build/SRPMS/mrtrix3-3.0.8-7.fc46.src.rpm Updating and loading repositories: fedora 100% | 267.3 KiB/s | 23.0 KiB | 00m00s Copr repository 100% | 153.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "libappstream-glib-0.8.4-1.fc45.x86_64" is already installed. Package "desktop-file-utils-0.28-8.fc45.x86_64" is already installed. Package "eigen3-devel-5.0.1-4.fc45.noarch" is already installed. Package "fftw-devel-3.3.10-18.fc45.x86_64" is already installed. Package "gcc-c++-16.2.1-2.fc46.1.x86_64" is already installed. Package "git-2.55.0-2.fc45.x86_64" is already installed. Package "libpng-devel-2:1.6.58-2.fc45.x86_64" is already installed. Package "libtiff-devel-4.7.2-2.fc45.x86_64" is already installed. Package "mesa-libGL-devel-26.2.3-1.fc46.x86_64" is already installed. Package "mesa-libGLU-devel-9.0.3-9.fc45.x86_64" is already installed. Package "python3-3.15.0~rc2-1.fc46.x86_64" is already installed. Package "python3-devel-3.15.0~rc2-1.fc46.x86_64" is already installed. Package "qt5-qtbase-devel-5.15.18-5.fc45.x86_64" is already installed. Package "qt5-qtsvg-devel-5.15.18-3.fc45.x86_64" is already installed. Package "zlib-ng-compat-devel-2.3.3-6.fc45.x86_64" is already installed. Nothing to do. Finish: build setup for mrtrix3-3.0.8-7.fc46.src.rpm Start: rpmbuild mrtrix3-3.0.8-7.fc46.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1790812800 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.OomVut Creating(rpmbuild.env): /builddir/build/BUILD/mrtrix3-3.0.8-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/mrtrix3-3.0.8-build" RPM_OPT_FLAGS="-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="x86_64" RPM_OS="linux" RPM_BUILD_NCPUS="1" RPM_SPECPARTS_DIR="/builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="mrtrix3" RPM_PACKAGE_VERSION="3.0.8" RPM_PACKAGE_RELEASE="7.fc46" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.G7NHGY + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + rm -rf mrtrix3-3.0.8 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/mrtrix3-3.0.8.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd mrtrix3-3.0.8 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + tar xf /builddir/build/SOURCES/eigen-3.4.0.tar.gz + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.2QzZ9n + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + sed -i 's|#!/usr/bin/env python|#!/usr/bin/python3|' configure build + export 'CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export 'LINKFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LINKFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + unset ARCH + export NUMBER_OF_PROCESSORS=1 + NUMBER_OF_PROCESSORS=1 + export QMAKE=/usr/bin/qmake-qt5 + QMAKE=/usr/bin/qmake-qt5 + export MOC=/usr/bin/moc-qt5 + MOC=/usr/bin/moc-qt5 + export RCC=/usr/bin/rcc-qt5 + RCC=/usr/bin/rcc-qt5 + export 'EIGEN_CFLAGS=-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + EIGEN_CFLAGS='-isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0' + ./configure MRtrix build type requested: release version Detecting OS: linux Looking for compiler [g++]: g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2) Checking for C++11 compliance: ok Checking shared library generation: ok Detecting pointer size: 64 bit Detecting byte order: little-endian Checking for variable-length array support: ok Checking for non-POD variable-length array support: ok Checking for ::max_align_t: 16 bytes Checking for std::max_align_t: 16 bytes Checking for Eigen3 library: 3.4.0 Checking for Eigen3 Unsupported: Present Checking for zlib compression library: 1.3.1.zlib-ng Checking for "JSON for Modern C++" requirements: ok Checking for TIFF library: LIBTIFF, Version 4.7.2 Checking for PNG library: Header: 1.6.58; library: 1.6.58 Checking for FFTW library: fftw-3.3.10-sse2-avx-avx2-avx2_128 Checking for Qt moc: /usr/bin/moc-qt5 (version 5.15.18) Checking for Qt qmake: /usr/bin/qmake-qt5 (version 5.15.18) Checking for Qt rcc: /usr/bin/rcc-qt5 (version 5.15.18) Checking for Qt: 5.15.18 writing configuration to file './config': ok + ./build /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:540: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (config_file, mode='r', encoding='utf-8') as f: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:1023: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (current_file, mode='r', encoding='utf-8') as fd: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:857: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (modify_path (self.name, strip=cpp_suffix, add=h_suffix), mode='r', encoding='utf-8') as fd: ( 1/548) [CC] tmp/src/exec_version.o ( 2/548) [CC] tmp/cmd/warpinvert.o ( 3/548) [CC] tmp/core/file/config.o ( 4/548) [CC] tmp/core/adapter/reslice.o ( 5/548) [CC] tmp/core/math/betainc.o ( 6/548) [CC] tmp/core/math/stats/fwe.o ( 7/548) [CC] tmp/core/file/dicom/dict.o ( 8/548) [CC] tmp/core/formats/par.o ( 9/548) [CC] tmp/core/math/zstatistic.o ( 10/548) [CC] tmp/core/image_io/tiff.o ( 11/548) [CC] tmp/core/file/mgh.o ( 12/548) [CC] tmp/core/file/dicom/study.o ( 13/548) [CC] tmp/core/exception.o ( 14/548) [CC] tmp/core/file/nifti_utils.o ( 15/548) [CC] tmp/core/image_io/gz.o ( 16/548) [CC] tmp/core/file/json_utils.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o: In file included from /usr/include/c++/16/bits/exception_ptr.h:41, from /usr/include/c++/16/exception:182, from /usr/include/c++/16/ios:43, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/fstream:42, from core/file/json_utils.cpp:17: In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12715:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ In file included from ./core/file/json_utils.h:20, from core/file/json_utils.cpp:20: ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12715:38: note: ‘’ declared here 12715 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12768:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12768:34: note: ‘’ declared here 12768 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12792:36: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12792:38: note: ‘’ declared here 12792 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12822:32: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12822:34: note: ‘’ declared here 12822 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘std::_Require >, std::is_move_constructible<_Tp>, std::is_move_assignable<_Tp> > std::swap(_Tp&, _Tp&) [with _Tp = nlohmann::basic_json<>::json_value]’, inlined from ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator=(nlohmann::basic_json) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:2890:18, inlined from ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’ at ./core/file/json.h:12897:24: /usr/include/c++/16/bits/move.h:239:7: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 239 | __a = _GLIBCXX_MOVE(__b); | ^~~ ./core/file/json.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: ./core/file/json.h:12897:26: note: ‘’ declared here 12897 | result = basic_json(value_t::discarded); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ( 17/548) [CC] tmp/core/formats/nifti1_gz.o ( 18/548) [CC] tmp/core/file/mmap.o ( 19/548) [CC] tmp/core/image_io/scratch.o ( 20/548) [CC] tmp/core/image_io/fetch_store.o ( 21/548) [CC] tmp/core/formats/mrtrix_sparse_legacy.o ( 22/548) [CC] tmp/core/datatype.o ( 23/548) [CC] tmp/core/formats/mgz.o ( 24/548) [CC] tmp/core/progressbar.o ( 25/548) [CC] tmp/core/metadata/phase_encoding.o ( 26/548) [CC] tmp/core/math/average_space.o ( 27/548) [CC] tmp/core/formats/mrtrix_gz.o ( 28/548) [CC] tmp/core/metadata/bids.o ( 29/548) [CC] tmp/core/file/dicom/select_cmdline.o ( 30/548) [CC] tmp/core/file/dicom/series.o ( 31/548) [CC] tmp/core/math/SH.o ( 32/548) [CC] tmp/core/dwi/gradient.o ( 33/548) [CC] tmp/core/misc/bitset.o ( 34/548) [CC] tmp/core/file/dicom/mapper.o ( 35/548) [CC] tmp/core/image_io/ram.o ( 36/548) [CC] tmp/core/formats/mgh.o ( 37/548) [CC] tmp/core/math/stats/shuffle.o ( 38/548) [CC] tmp/core/math/stats/import.o ( 39/548) [CC] tmp/core/metadata/slice_encoding.o ( 40/548) [CC] tmp/core/algo/histogram.o ( 41/548) [CC] tmp/core/formats/tiff.o ( 42/548) [CC] tmp/core/math/erfinv.o ( 43/548) [CC] tmp/core/formats/png.o ( 44/548) [CC] tmp/core/app.o ( 45/548) [CC] tmp/core/signal_handler.o ( 46/548) [CC] tmp/core/file/png.o ( 47/548) [CC] tmp/core/filter/connected_components.o ( 48/548) [CC] tmp/core/formats/mrtrix.o ( 49/548) [CC] tmp/core/file/dicom/patient.o ( 50/548) [CC] tmp/core/formats/xds.o ( 51/548) [CC] tmp/core/image_io/default.o ( 52/548) [CC] tmp/core/formats/ram.o ( 53/548) [CC] tmp/core/stats.o ( 54/548) [CC] tmp/core/formats/mri.o ( 55/548) [CC] tmp/core/axes.o ( 56/548) [CC] tmp/core/image_io/null.o ( 57/548) [CC] tmp/core/file/name_parser.o ( 58/548) [CC] tmp/core/thread.o ( 59/548) [CC] tmp/core/math/stats/glm.o ( 60/548) [CC] tmp/core/version.o ( 61/548) [CC] tmp/core/image_io/mosaic.o ( 62/548) [CC] tmp/core/file/dicom/element.o ( 63/548) [CC] tmp/core/math/bessel.o ( 64/548) [CC] tmp/core/header.o ( 65/548) [CC] tmp/core/formats/pipe.o ( 66/548) [CC] tmp/core/formats/mrtrix_utils.o ( 67/548) [CC] tmp/core/formats/nifti1.o ( 68/548) [CC] tmp/core/file/tiff.o ( 69/548) [CC] tmp/core/image_io/base.o ( 70/548) [CC] tmp/core/formats/nifti2.o ( 71/548) [CC] tmp/core/dwi/shells.o ( 72/548) [CC] tmp/core/file/dicom/quick_scan.o ( 73/548) [CC] tmp/core/file/key_value.o ( 74/548) [CC] tmp/core/image_io/sparse.o ( 75/548) [CC] tmp/core/file/dicom/tree.o ( 76/548) [CC] tmp/core/file/dicom/image.o ( 77/548) [CC] tmp/core/image_io/variable_scaling.o ( 78/548) [CC] tmp/core/image_io/png.o ( 79/548) [CC] tmp/core/stride.o ( 80/548) [CC] tmp/core/mrtrix.o ( 81/548) [CC] tmp/core/formats/dicom.o ( 82/548) [CC] tmp/core/image_io/pipe.o ( 83/548) [CC] tmp/core/formats/nifti2_gz.o ( 84/548) [CC] tmp/core/formats/list.o ( 85/548) [CC] tmp/core/file/ofstream.o ( 86/548) [LD] lib/libmrtrix.so ( 87/548) [LB] bin/warpinvert ( 88/548) [CC] tmp/cmd/warpinit.o ( 89/548) [LB] bin/warpinit ( 90/548) [CC] tmp/cmd/warpcorrect.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/warpcorrect.cpp -o tmp/cmd/warpcorrect.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/warpcorrect.cpp:16: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = float; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘BoundsCheck::BoundsCheck(const BoundsCheck&)’ at cmd/warpcorrect.cpp:53:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = BoundsCheck; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = BoundsCheck&; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/warpcorrect.cpp:113:10: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘func.BoundsCheck::val.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ cmd/warpcorrect.cpp: In function ‘void run()’: cmd/warpcorrect.cpp:110:8: note: ‘func’ declared here 110 | auto func = BoundsCheck (precision, oob_vector, count); | ^~~~ ( 91/548) [LB] bin/warpcorrect ( 92/548) [CC] tmp/cmd/warpconvert.o ( 93/548) [LB] bin/warpconvert ( 94/548) [CC] tmp/cmd/warp2metric.o ( 95/548) [LB] bin/warp2metric ( 96/548) [CC] tmp/src/connectome/lut.o ( 97/548) [CC] tmp/src/connectome/connectome.o ( 98/548) [CC] tmp/cmd/voxel2mesh.o ( 99/548) [CC] tmp/src/surface/freesurfer.o (100/548) [CC] tmp/src/surface/mesh.o (101/548) [CC] tmp/src/surface/polygon.o (102/548) [CC] tmp/src/surface/scalar.o (103/548) [LB] bin/voxel2mesh (104/548) [CC] tmp/cmd/voxel2fixel.o (105/548) [LB] bin/voxel2fixel (106/548) [CC] tmp/cmd/vectorstats.o (107/548) [CC] tmp/src/stats/permtest.o (108/548) [LB] bin/vectorstats (109/548) [CC] tmp/src/dwi/tractography/properties.o (110/548) [CC] tmp/src/dwi/tractography/seeding/list.o (111/548) [CC] tmp/src/dwi/tractography/roi.o (112/548) [CC] tmp/src/dwi/tractography/rng.o (113/548) [CC] tmp/src/dwi/tractography/file_base.o (114/548) [CC] tmp/cmd/tsfvalidate.o (115/548) [LB] bin/tsfvalidate (116/548) [CC] tmp/cmd/tsfthreshold.o (117/548) [LB] bin/tsfthreshold (118/548) [CC] tmp/cmd/tsfsmooth.o (119/548) [LB] bin/tsfsmooth (120/548) [CC] tmp/cmd/tsfmult.o (121/548) [LB] bin/tsfmult (122/548) [CC] tmp/cmd/tsfinfo.o (123/548) [LB] bin/tsfinfo (124/548) [CC] tmp/cmd/tsfdivide.o (125/548) [LB] bin/tsfdivide (126/548) [CC] tmp/cmd/transformconvert.o (127/548) [LB] bin/transformconvert (128/548) [CC] tmp/cmd/transformcompose.o (129/548) [LB] bin/transformcompose (130/548) [CC] tmp/cmd/transformcalc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/transformcalc.cpp -o tmp/cmd/transformcalc.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from cmd/transformcalc.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (131/548) [LB] bin/transformcalc (132/548) [CC] tmp/cmd/tensor2metric.o (133/548) [LB] bin/tensor2metric (134/548) [CC] tmp/cmd/tcktransform.o (135/548) [LB] bin/tcktransform (136/548) [CC] tmp/src/dwi/tractography/weights.o (137/548) [CC] tmp/cmd/tckstats.o (138/548) [LB] bin/tckstats (139/548) [CC] tmp/src/dwi/tractography/SIFT2/fixel_updater.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/fixel_updater.cpp -o tmp/src/dwi/tractography/SIFT2/fixel_updater.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/fixel_updater.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (140/548) [CC] tmp/src/dwi/tractography/SIFT2/tckfactor.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/tckfactor.cpp -o tmp/src/dwi/tractography/SIFT2/tckfactor.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/tckfactor.cpp:31: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from src/dwi/tractography/SIFT2/tckfactor.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (141/548) [CC] tmp/src/dwi/tractography/resampling/arc.o (142/548) [CC] tmp/src/dwi/directions/set.o (143/548) [CC] tmp/src/dwi/tractography/SIFT/track_index_range.o (144/548) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o (145/548) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o (146/548) [CC] tmp/cmd/tcksift2.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift2.cpp -o tmp/cmd/tcksift2.o: In file included from src/dwi/tractography/mapping/fixel_td_map.h:21, from cmd/tcksift2.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift2.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT2::Fixel::Fixel(const MR::DWI::Tractography::SIFT2::Fixel&)’ at src/dwi/tractography/SIFT2/fixel.h:65:31, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT2::Fixel; _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT2::Fixel}; _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT2::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT2::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (147/548) [CC] tmp/src/dwi/fmls.o (148/548) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o (149/548) [CC] tmp/src/dwi/tractography/resampling/downsampler.o (150/548) [CC] tmp/src/dwi/tractography/SIFT2/line_search.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/line_search.cpp -o tmp/src/dwi/tractography/SIFT2/line_search.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/line_search.cpp:19: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (151/548) [CC] tmp/src/dwi/tractography/SIFT/track_contribution.o (152/548) [CC] tmp/src/dwi/tractography/resampling/endpoints.o (153/548) [CC] tmp/src/dwi/tractography/resampling/upsampler.o (154/548) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o (155/548) [CC] tmp/src/dwi/tractography/SIFT/sift.o (156/548) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o (157/548) [CC] tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/coeff_optimiser.cpp -o tmp/src/dwi/tractography/SIFT2/coeff_optimiser.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/coeff_optimiser.cpp:21: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (158/548) [CC] tmp/src/dwi/tractography/ACT/act.o (159/548) [CC] tmp/src/dwi/tractography/SIFT2/streamline_stats.o (160/548) [CC] tmp/src/dwi/tractography/mapping/mapper.o (161/548) [CC] tmp/src/dwi/tractography/SIFT2/reg_calculator.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT2/reg_calculator.cpp -o tmp/src/dwi/tractography/SIFT2/reg_calculator.o: In file included from src/dwi/tractography/SIFT/model.h:25, from src/dwi/tractography/SIFT2/tckfactor.h:30, from src/dwi/tractography/SIFT2/reg_calculator.cpp:20: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT2/tckfactor.h:59:38: required from here 59 | class TckFactor : public SIFT::Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/model.h:38: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT2::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (162/548) [CC] tmp/src/dwi/tractography/resampling/resampling.o (163/548) [CC] tmp/src/dwi/directions/mask.o (164/548) [CC] tmp/src/dwi/tractography/mapping/mapping.o (165/548) [CC] tmp/src/dwi/tractography/mapping/voxel.o (166/548) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o (167/548) [CC] tmp/src/dwi/directions/predefined.o (168/548) [LB] bin/tcksift2 (169/548) [CC] tmp/src/dwi/tractography/SIFT/sifter.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/sifter.cpp -o tmp/src/dwi/tractography/SIFT/sifter.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from src/dwi/tractography/SIFT/sifter.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (170/548) [CC] tmp/cmd/tcksift.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tcksift.cpp -o tmp/cmd/tcksift.o: In file included from src/dwi/tractography/SIFT/sifter.h:27, from cmd/tcksift.cpp:27: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/SIFT/model.h:58:13: required from ‘class MR::DWI::Tractography::SIFT::Model’ 58 | class Model : public ModelBase | ^~~~~ src/dwi/tractography/SIFT/sifter.h:48:29: required from here 48 | class SIFTer : public Model | ^~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30, from src/dwi/tractography/SIFT/fixel.h:23, from src/dwi/tractography/SIFT/sifter.h:29: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/tcksift.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘MR::DWI::Tractography::SIFT::Fixel::Fixel(const MR::DWI::Tractography::SIFT::Fixel&)’ at src/dwi/tractography/SIFT/fixel.h:47:28, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = MR::DWI::Tractography::SIFT::Fixel; _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:594:26, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MR::DWI::Tractography::SIFT::Fixel}; _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:127:21, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MR::DWI::Tractography::SIFT::Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’ at src/dwi/tractography/SIFT/model.h:228:30: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.MR::DWI::Tractography::SIFT::Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/sifter.h:31: src/dwi/tractography/SIFT/model.h: In member function ‘void MR::DWI::Tractography::SIFT::Model::remove_excluded_fixels() [with Fixel = MR::DWI::Tractography::SIFT::Fixel]’: src/dwi/tractography/SIFT/model.h:228:31: note: ‘’ declared here 228 | new_fixels.push_back (Fixel()); | ^~~~~~~ (171/548) [CC] tmp/src/dwi/tractography/SIFT/gradient_sort.o (172/548) [LB] bin/tcksift (173/548) [CC] tmp/cmd/tcksample.o (174/548) [LB] bin/tcksample (175/548) [CC] tmp/cmd/tckresample.o (176/548) [LB] bin/tckresample (177/548) [CC] tmp/cmd/tckmap.o (178/548) [CC] tmp/src/dwi/tractography/mapping/writer.o (179/548) [CC] tmp/src/dwi/tractography/mapping/gaussian/mapper.o (180/548) [LB] bin/tckmap (181/548) [CC] tmp/cmd/tckinfo.o (182/548) [LB] bin/tckinfo (183/548) [CC] tmp/src/dwi/tractography/GT/mhsampler.o (184/548) [CC] tmp/src/dwi/tractography/GT/gt.o (185/548) [CC] tmp/src/dwi/tractography/GT/internalenergy.o (186/548) [CC] tmp/src/dwi/tractography/GT/particlegrid.o (187/548) [CC] tmp/src/dwi/tractography/GT/externalenergy.o (188/548) [CC] tmp/cmd/tckglobal.o (189/548) [CC] tmp/src/dwi/tractography/GT/particle.o (190/548) [LB] bin/tckglobal (191/548) [CC] tmp/cmd/tckgen.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/tckgen.cpp -o tmp/cmd/tckgen.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/tracking/exec.h:36, from cmd/tckgen.cpp:23: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/mapping/mapper_plugins.h:24, from src/dwi/tractography/mapping/mapper.h:31, from src/dwi/tractography/tracking/exec.h:32: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.2213[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (192/548) [CC] tmp/src/dwi/tractography/tracking/write_kernel.o (193/548) [CC] tmp/src/dwi/tractography/seeding/basic.o (194/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD1.o (195/548) [CC] tmp/src/dwi/tractography/tracking/tractography.o (196/548) [CC] tmp/src/dwi/tractography/tracking/shared.o (197/548) [CC] tmp/src/dwi/tractography/tracking/early_exit.o (198/548) [CC] tmp/src/dwi/tractography/tracking/method.o (199/548) [CC] tmp/src/dwi/tractography/ACT/gmwmi.o (200/548) [CC] tmp/src/dwi/tractography/seeding/gmwmi.o (201/548) [CC] tmp/src/dwi/tractography/algorithms/iFOD2.o (202/548) [CC] tmp/src/dwi/tractography/seeding/seeding.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/seeding.cpp -o tmp/src/dwi/tractography/seeding/seeding.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/seeding.h:23, from src/dwi/tractography/seeding/seeding.cpp:18: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (203/548) [CC] tmp/src/dwi/tractography/seeding/dynamic.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/dynamic.cpp -o tmp/src/dwi/tractography/seeding/dynamic.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from src/dwi/tractography/seeding/dynamic.h:32, from src/dwi/tractography/seeding/dynamic.cpp:17: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ src/dwi/tractography/seeding/dynamic.h:207:49: required from here 207 | class Dynamic : public Base, public SIFT::ModelBase | ^~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = MR::DWI::Tractography::Seeding::Fixel_TD_seed]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ (204/548) [LB] bin/tckgen (205/548) [CC] tmp/cmd/tckedit.o (206/548) [CC] tmp/src/dwi/tractography/editing/receiver.o (207/548) [CC] tmp/src/dwi/tractography/editing/editing.o (208/548) [CC] tmp/src/dwi/tractography/editing/worker.o (209/548) [LB] bin/tckedit (210/548) [CC] tmp/cmd/tckdfc.o (211/548) [LB] bin/tckdfc (212/548) [CC] tmp/cmd/tckconvert.o (213/548) [LB] bin/tckconvert (214/548) [CC] tmp/cmd/tck2fixel.o (215/548) [LB] bin/tck2fixel (216/548) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o (217/548) [CC] tmp/src/dwi/tractography/connectome/matrix.o (218/548) [CC] tmp/src/dwi/tractography/connectome/connectome.o (219/548) [CC] tmp/cmd/tck2connectome.o (220/548) [LB] bin/tck2connectome (221/548) [CC] tmp/src/gui/crosshair.o (222/548) [CC] tmp/src/gui/opengl/gl_core_3_3.o (223/548) [CC] tmp/src/gui/color_button.o (224/548) [CC] tmp/src/gui/dialog/dialog.o (225/548) [CC] tmp/src/gui/dialog/list.o (226/548) [CC] tmp/src/gui/shview/file_open.o (227/548) [MOC] tmp/src/gui/opengl/lighting_moc.cpp (228/548) [CC] tmp/src/gui/opengl/lighting_moc.o (229/548) [CC] tmp/src/gui/dialog/file.o (230/548) [CC] tmp/src/gui/dialog/dicom.o (231/548) [CC] tmp/src/gui/dialog/report_exception.o (232/548) [CC] tmp/src/gui/opengl/lighting.o (233/548) [CC] tmp/src/gui/shapes/halfsphere.o (234/548) [CC] tmp/src/gui/dwi/renderer.o (235/548) [CC] tmp/src/gui/lighting_dock.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (236/548) [RCC] tmp/src/gui/shview/icons.cpp (237/548) [CC] tmp/src/gui/shview/icons.o (238/548) [MOC] tmp/src/gui/shview/render_window_moc.cpp (239/548) [CC] tmp/src/gui/shview/render_window_moc.o (240/548) [MOC] tmp/src/gui/lighting_dock_moc.cpp (241/548) [CC] tmp/src/gui/lighting_dock_moc.o (242/548) [CC] tmp/src/gui/dialog/progress.o (243/548) [CC] tmp/src/gui/gui.o (244/548) [CC] tmp/src/gui/shview/render_window.o (245/548) [CC] tmp/src/gui/opengl/gl.o (246/548) [CC] tmp/src/gui/projection.o (247/548) [MOC] tmp/src/gui/dwi/render_frame_moc.cpp (248/548) [CC] tmp/src/gui/dwi/render_frame_moc.o (249/548) [CC] tmp/cmd/shview.o (250/548) [CC] tmp/src/gui/dwi/render_frame.o (251/548) [CC] tmp/src/gui/opengl/font.o (252/548) [CC] tmp/src/gui/opengl/shader.o (253/548) [MOC] tmp/src/gui/color_button_moc.cpp (254/548) [CC] tmp/src/gui/color_button_moc.o (255/548) [LB] bin/shview (256/548) [CC] tmp/cmd/shconv.o (257/548) [LB] bin/shconv (258/548) [CC] tmp/cmd/shbasis.o (259/548) [LB] bin/shbasis (260/548) [CC] tmp/cmd/sh2response.o (261/548) [LB] bin/sh2response (262/548) [CC] tmp/cmd/sh2power.o (263/548) [LB] bin/sh2power (264/548) [CC] tmp/cmd/sh2peaks.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/sh2peaks.cpp -o tmp/cmd/sh2peaks.o: In file included from cmd/sh2peaks.cpp:18: ./core/math/SH.h: In function ‘void MR::Math::SH::derivatives(const VectorType&, int, typename VectorType::Scalar, typename VectorType::Scalar, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, typename VectorType::Scalar&, PrecomputedAL*) [with VectorType = Eigen::Matrix]’: ./core/math/SH.h:604:33: warning: ‘*AL.714[0]’ may be used uninitialized [-Wmaybe-uninitialized] 604 | amplitude = sh[0] * AL[0]; | ~~^ (265/548) [LB] bin/sh2peaks (266/548) [CC] tmp/src/dwi/directions/file.o (267/548) [CC] tmp/cmd/sh2amp.o (268/548) [LB] bin/sh2amp (269/548) [CC] tmp/cmd/peaks2fixel.o (270/548) [LB] bin/peaks2fixel (271/548) [CC] tmp/cmd/peaks2amp.o (272/548) [LB] bin/peaks2amp (273/548) [CC] tmp/cmd/mtnormalise.o (274/548) [LB] bin/mtnormalise (275/548) [CC] tmp/src/gui/mrview/sync/client.o (276/548) [CC] tmp/src/gui/mrview/tool/connectome/node.o (277/548) [CC] tmp/src/surface/mesh_multi.o (278/548) [MOC] tmp/src/gui/mrview/window_moc.cpp (279/548) [CC] tmp/src/gui/mrview/window_moc.o (280/548) [CC] tmp/cmd/mrview.o (281/548) [MOC] tmp/src/gui/mrview/adjust_button_moc.cpp (282/548) [CC] tmp/src/gui/mrview/adjust_button_moc.o (283/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file.o (284/548) [MOC] tmp/src/gui/mrview/tool/connectome/node_list_moc.cpp (285/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list_moc.o (286/548) [CC] tmp/src/gui/shapes/cylinder.o (287/548) [MOC] tmp/src/gui/mrview/mode/ortho_moc.cpp (288/548) [CC] tmp/src/gui/mrview/mode/ortho_moc.o (289/548) [CC] tmp/src/gui/cursor.o (290/548) [MOC] tmp/src/gui/mrview/mode/lightbox_moc.cpp (291/548) [CC] tmp/src/gui/mrview/mode/lightbox_moc.o (292/548) [CC] tmp/src/gui/mrview/tool/roi_editor/item.o (293/548) [MOC] tmp/src/gui/mrview/sync/syncmanager_moc.cpp (294/548) [CC] tmp/src/gui/mrview/sync/syncmanager_moc.o (295/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome.o (296/548) [CC] tmp/src/gui/mrview/sync/syncmanager.o (297/548) [CC] tmp/src/gui/mrview/tool/connectome/colourmap_observers.o (298/548) [CC] tmp/src/gui/mrview/tool/connectome/edge.o (299/548) [CC] tmp/src/gui/mrview/tool/fixel/legacy.o (300/548) [CC] tmp/src/gui/mrview/sync/localsocketreader.o (301/548) [MOC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.cpp (302/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi_moc.o (303/548) [MOC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.cpp (304/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator_moc.o (305/548) [MOC] tmp/src/gui/mrview/displayable_moc.cpp (306/548) [CC] tmp/src/gui/mrview/displayable_moc.o (307/548) [MOC] tmp/src/gui/mrview/tool/connectome/selection_moc.cpp (308/548) [CC] tmp/src/gui/mrview/tool/connectome/selection_moc.o (309/548) [CC] tmp/src/gui/mrview/tool/connectome/file_data_vector.o (310/548) [MOC] tmp/src/gui/mrview/tool/odf/odf_moc.cpp (311/548) [CC] tmp/src/gui/mrview/tool/odf/odf_moc.o (312/548) [MOC] tmp/src/gui/mrview/combo_box_error_moc.cpp (313/548) [CC] tmp/src/gui/mrview/combo_box_error_moc.o (314/548) [CC] tmp/src/gui/mrview/tool/odf/item.o (315/548) [CC] tmp/src/gui/mrview/sync/interprocesscommunicator.o (316/548) [CC] tmp/src/gui/mrview/combo_box_error.o (317/548) [MOC] tmp/src/gui/mrview/tool/transform_moc.cpp (318/548) [CC] tmp/src/gui/mrview/tool/transform_moc.o (319/548) [CC] tmp/src/gui/mrview/tool/base.o (320/548) [CC] tmp/src/gui/mrview/adjust_button.o (321/548) [CC] tmp/src/gui/mrview/sync/processlock.o (322/548) [CC] tmp/src/gui/mrview/tool/connectome/shaders.o (323/548) [CC] tmp/src/gui/mrview/tool/connectome/selection.o (324/548) [CC] tmp/src/gui/mrview/mode/ortho.o (325/548) [CC] tmp/src/gui/mrview/mode/slice.o (326/548) [CC] tmp/src/gui/mrview/mode/base.o (327/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel.o (328/548) [MOC] tmp/src/gui/mrview/tool/view_moc.cpp (329/548) [CC] tmp/src/gui/mrview/tool/view_moc.o /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/./build:746: DeprecationWarning: codecs.open() is deprecated. Use open() instead. with codecs.open (self.cmd[1], mode='w', encoding='utf-8') as fd: (330/548) [RCC] tmp/src/gui/mrview/icons.cpp (331/548) [CC] tmp/src/gui/mrview/icons.o (332/548) [CC] tmp/src/gui/mrview/tool/fixel/directory.o (333/548) [CC] tmp/src/gui/mrview/tool/roi_editor/roi.o (334/548) [CC] tmp/src/gui/mrview/file_open.o (335/548) [CC] tmp/src/gui/mrview/gui_image.o (336/548) [CC] tmp/src/gui/mrview/mode/lightbox.o (337/548) [CC] tmp/src/gui/mrview/mode/volume.o (338/548) [CC] tmp/src/gui/mrview/tool/fixel/base_fixel.o (339/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram.o (340/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractography_moc.cpp (341/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography_moc.o (342/548) [CC] tmp/src/gui/mrview/tool/roi_editor/undoentry.o (343/548) [CC] tmp/src/gui/mrview/colourmap_button.o (344/548) [CC] tmp/src/gui/mrview/tool/connectome/node_list.o (345/548) [MOC] tmp/src/gui/mrview/tool/connectome/connectome_moc.cpp (346/548) [CC] tmp/src/gui/mrview/tool/connectome/connectome_moc.o (347/548) [CC] tmp/src/gui/mrview/tool/screen_capture.o (348/548) [MOC] tmp/src/gui/dialog/image_properties_moc.cpp (349/548) [CC] tmp/src/gui/dialog/image_properties_moc.o (350/548) [CC] tmp/src/gui/mrview/tool/overlay.o (351/548) [CC] tmp/src/gui/mrview/tool/transform.o (352/548) [CC] tmp/src/gui/mrview/tool/odf/preview.o (353/548) [MOC] tmp/src/gui/mrview/spin_box_moc.cpp (354/548) [CC] tmp/src/gui/mrview/spin_box_moc.o (355/548) [CC] tmp/src/gui/mrview/tool/odf/model.o (356/548) [CC] tmp/src/gui/mrview/tool/odf/odf.o (357/548) [MOC] tmp/src/gui/mrview/tool/odf/preview_moc.cpp (358/548) [CC] tmp/src/gui/mrview/tool/odf/preview_moc.o (359/548) [CC] tmp/src/gui/mrview/tool/connectome/node_overlay.o (360/548) [CC] tmp/src/gui/mrview/tool/view.o (361/548) [CC] tmp/src/gui/mrview/colourbars.o (362/548) [MOC] tmp/src/gui/mrview/sync/localsocketreader_moc.cpp (363/548) [CC] tmp/src/gui/mrview/sync/localsocketreader_moc.o (364/548) [CC] tmp/src/gui/dialog/image_properties.o (365/548) [MOC] tmp/src/gui/mrview/colourmap_button_moc.cpp (366/548) [CC] tmp/src/gui/mrview/colourmap_button_moc.o (367/548) [CC] tmp/src/colourmap.o (368/548) [CC] tmp/src/gui/shapes/sphere.o (369/548) [MOC] tmp/src/gui/mrview/tool/fixel/fixel_moc.cpp (370/548) [CC] tmp/src/gui/mrview/tool/fixel/fixel_moc.o (371/548) [CC] tmp/src/gui/mrview/displayable.o (372/548) [CC] tmp/src/gui/mrview/tool/connectome/matrix_list.o (373/548) [CC] tmp/src/gui/mrview/window.o (374/548) [CC] tmp/src/gui/mrview/tool/roi_editor/model.o (375/548) [MOC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.cpp (376/548) [CC] tmp/src/gui/mrview/tool/tractography/tractogram_moc.o (377/548) [CC] tmp/src/gui/mrview/tool/fixel/image4D.o (378/548) [MOC] tmp/src/gui/mrview/tool/overlay_moc.cpp (379/548) [CC] tmp/src/gui/mrview/tool/overlay_moc.o (380/548) [CC] tmp/src/gui/shapes/cube.o (381/548) [MOC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp (382/548) [CC] tmp/src/gui/mrview/tool/tractography/track_scalar_file_moc.o (383/548) [MOC] tmp/src/gui/mrview/tool/screen_capture_moc.cpp (384/548) [CC] tmp/src/gui/mrview/tool/screen_capture_moc.o (385/548) [CC] tmp/src/gui/dialog/opengl.o (386/548) [CC] tmp/src/gui/mrview/tool/tractography/tractography.o (387/548) [CC] tmp/src/gui/mrview/volume.o (388/548) [LB] bin/mrview (389/548) [CC] tmp/src/registration/multi_contrast.o (390/548) [CC] tmp/cmd/mrtransform.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrtransform.cpp -o tmp/cmd/mrtransform.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrtransform.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (391/548) [LB] bin/mrtransform (392/548) [CC] tmp/cmd/mrthreshold.o (393/548) [LB] bin/mrthreshold (394/548) [CC] tmp/cmd/mrstats.o (395/548) [LB] bin/mrstats (396/548) [CC] tmp/src/registration/transform/affine.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/affine.h:20, from src/registration/transform/affine.cpp:18: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (397/548) [CC] tmp/src/registration/transform/rigid.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from src/registration/transform/base.h:20, from src/registration/transform/rigid.h:20, from src/registration/transform/rigid.cpp:20: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (398/548) [CC] tmp/src/registration/linear.o (399/548) [CC] tmp/src/registration/nonlinear.o (400/548) [CC] tmp/src/registration/transform/convergence_check.o (401/548) [CC] tmp/cmd/mrregister.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrregister.cpp -o tmp/cmd/mrregister.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/mrregister.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (402/548) [CC] tmp/src/registration/transform/initialiser_helpers.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from src/registration/transform/initialiser_helpers.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (403/548) [CC] tmp/src/registration/transform/initialiser.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o: In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:277, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/header.h:23, from ./core/image.h:25, from src/registration/transform/initialiser.h:20, from src/registration/transform/initialiser.cpp:17: In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:278: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ In member function ‘Eigen::internal::mapbase_evaluator::CoeffReturnType Eigen::internal::mapbase_evaluator::coeff(Eigen::Index, Eigen::Index) const [with Derived = Eigen::Block, 1, 1, false>; PlainObjectType = Eigen::Matrix]’, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with ArgType = const Eigen::Block, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:325:27, inlined from ‘Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::CoeffReturnType Eigen::internal::binary_evaluator, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::coeff(Eigen::Index, Eigen::Index) const [with BinaryOp = Eigen::internal::scalar_product_op; Lhs = const Eigen::Transpose, 1, 1, false> >; Rhs = const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:769:40, inlined from ‘Eigen::internal::redux_evaluator<_XprType>::CoeffReturnType Eigen::internal::redux_evaluator<_XprType>::coeffByOuterInner(Eigen::Index, Eigen::Index) const [with _XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:381:23, inlined from ‘static Eigen::internal::redux_novec_unroller::Scalar Eigen::internal::redux_novec_unroller::run(const Evaluator&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >; int Start = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:128:34, inlined from ‘static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >; Func = Eigen::internal::scalar_sum_op; Evaluator = Eigen::internal::redux_evaluator, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> > >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:350:65, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:418:56, inlined from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose, 1, 1, false> >, const Eigen::Block, 0, Eigen::Stride<0, 0> >, 1, 1, false> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Redux.h:463:25, inlined from ‘const Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::CoeffReturnType Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::coeff(Eigen::Index, Eigen::Index) const [with Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int ProductTag = 4]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:606:75, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeff(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:654:63, inlined from ‘void Eigen::internal::generic_dense_assignment_kernel::assignCoeffByOuterInner(Eigen::Index, Eigen::Index) [with DstEvaluatorTypeT = Eigen::internal::evaluator, -1, -1, false>, -1, -1, false> >; SrcEvaluatorTypeT = Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >; Functor = Eigen::internal::sub_assign_op; int Version = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:347:39, inlined from ‘static void Eigen::internal::dense_assignment_loop::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel, -1, -1, false>, -1, -1, false> >, Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >, Eigen::internal::sub_assign_op, 0>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:555:77, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; SrcXprType = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Functor = Eigen::internal::sub_assign_op; Weak = void]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘static void Eigen::internal::generic_product_impl::subTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:416:29, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::sub_assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::sub_assign_op&) [with DstXprType = Eigen::Block, -1, -1, false>, -1, -1, false>; Lhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >; Rhs = Eigen::Map, 0, Eigen::Stride<0, 0> >; int Options = 0; Scalar = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/ProductEvaluators.h:178:42, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>, -1, -1, false>; Src = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; Func = sub_assign_op]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘ExpressionType& Eigen::NoAlias::operator-=(const StorageBase&) [with OtherDerived = Eigen::Product, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 0>; ExpressionType = Eigen::Block, -1, -1, false>, -1, -1, false>; StorageBase = Eigen::MatrixBase]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/NoAlias.h:59:31, inlined from ‘void Eigen::MatrixBase::applyHouseholderOnTheLeft(const EssentialPart&, const Scalar&, Scalar*) [with EssentialPart = Eigen::VectorBlock, 4, 1, true>, -1>; Derived = Eigen::Block, -1, -1, false>]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Householder/Householder.h:132:22, inlined from ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Eigenvalues/HessenbergDecomposition.h:314:35: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/CoreEvaluators.h:911:56: warning: ‘srcEvaluator.Eigen::internal::evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1> >::.Eigen::internal::product_evaluator, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, 4, 1, true>, -1, 1, false> >, Eigen::Map, 0, Eigen::Stride<0, 0> >, 1>, 4, Eigen::DenseShape, Eigen::DenseShape, double, double>::m_lhs.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage.Eigen::DenseStorage::m_data.Eigen::internal::plain_array::array[2]’ may be used uninitialized [-Wmaybe-uninitialized] 911 | return m_data[col * colStride() + row * rowStride()]; | ^ /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h: In static member function ‘static void Eigen::HessenbergDecomposition<_MatrixType>::_compute(MatrixType&, CoeffVectorType&, VectorType&) [with _MatrixType = Eigen::Matrix]’: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/AssignEvaluator.h:774:20: note: ‘srcEvaluator’ declared here 774 | SrcEvaluatorType srcEvaluator(src); | ^~~~~~~~~~~~ (404/548) [LB] bin/mrregister (405/548) [CC] tmp/cmd/mrmetric.o (406/548) [LB] bin/mrmetric (407/548) [CC] tmp/cmd/mrmath.o (408/548) [LB] bin/mrmath (409/548) [CC] tmp/cmd/mrinfo.o (410/548) [LB] bin/mrinfo (411/548) [CC] tmp/cmd/mrhistogram.o (412/548) [LB] bin/mrhistogram (413/548) [CC] tmp/cmd/mrhistmatch.o (414/548) [LB] bin/mrhistmatch (415/548) [CC] tmp/cmd/mrgrid.o (416/548) [LB] bin/mrgrid (417/548) [CC] tmp/cmd/mrfilter.o (418/548) [LB] bin/mrfilter (419/548) [CC] tmp/cmd/mredit.o (420/548) [LB] bin/mredit (421/548) [CC] tmp/cmd/mrdump.o (422/548) [LB] bin/mrdump (423/548) [CC] tmp/cmd/mrdegibbs.o (424/548) [LB] bin/mrdegibbs (425/548) [CC] tmp/cmd/mrconvert.o (426/548) [LB] bin/mrconvert (427/548) [CC] tmp/cmd/mrcolour.o (428/548) [LB] bin/mrcolour (429/548) [CC] tmp/src/stats/tfce.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o: In file included from src/stats/tfce.h:24, from src/stats/tfce.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (430/548) [CC] tmp/src/stats/cluster.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from src/stats/cluster.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (431/548) [CC] tmp/cmd/mrclusterstats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o: In file included from src/stats/tfce.h:24, from src/stats/cluster.h:23, from cmd/mrclusterstats.cpp:30: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (432/548) [LB] bin/mrclusterstats (433/548) [CC] tmp/cmd/mrcheckerboardmask.o (434/548) [LB] bin/mrcheckerboardmask (435/548) [CC] tmp/cmd/mrcentroid.o (436/548) [LB] bin/mrcentroid (437/548) [CC] tmp/cmd/mrcat.o (438/548) [LB] bin/mrcat (439/548) [CC] tmp/cmd/mrcalc.o (440/548) [LB] bin/mrcalc (441/548) [CC] tmp/cmd/mraverageheader.o (442/548) [LB] bin/mraverageheader (443/548) [CC] tmp/src/surface/filter/smooth.o (444/548) [CC] tmp/cmd/meshfilter.o (445/548) [CC] tmp/src/surface/filter/base.o (446/548) [LB] bin/meshfilter (447/548) [CC] tmp/cmd/meshconvert.o (448/548) [CC] tmp/src/surface/filter/vertex_transform.o (449/548) [LB] bin/meshconvert (450/548) [CC] tmp/src/surface/algo/mesh2image.o (451/548) [CC] tmp/cmd/mesh2voxel.o (452/548) [LB] bin/mesh2voxel (453/548) [CC] tmp/cmd/maskfilter.o (454/548) [LB] bin/maskfilter (455/548) [CC] tmp/cmd/maskdump.o (456/548) [LB] bin/maskdump (457/548) [CC] tmp/cmd/labelstats.o (458/548) [LB] bin/labelstats (459/548) [CC] tmp/cmd/labelconvert.o (460/548) [LB] bin/labelconvert (461/548) [CC] tmp/cmd/label2mesh.o (462/548) [LB] bin/label2mesh (463/548) [CC] tmp/cmd/label2colour.o (464/548) [LB] bin/label2colour (465/548) [CC] tmp/cmd/fod2fixel.o (466/548) [LB] bin/fod2fixel (467/548) [CC] tmp/cmd/fod2dec.o (468/548) [LB] bin/fod2dec (469/548) [CC] tmp/cmd/fixelreorient.o (470/548) [LB] bin/fixelreorient (471/548) [CC] tmp/src/stats/cfe.o (472/548) [CC] tmp/src/fixel/matrix.o (473/548) [CC] tmp/src/fixel/index_remapper.o (474/548) [CC] tmp/src/fixel/filter/smooth.o (475/548) [CC] tmp/src/fixel/filter/connect.o (476/548) [CC] tmp/cmd/fixelfilter.o (477/548) [LB] bin/fixelfilter (478/548) [CC] tmp/cmd/fixelcrop.o (479/548) [LB] bin/fixelcrop (480/548) [CC] tmp/cmd/fixelcorrespondence.o (481/548) [LB] bin/fixelcorrespondence (482/548) [CC] tmp/cmd/fixelconvert.o (483/548) [LB] bin/fixelconvert (484/548) [CC] tmp/cmd/fixelconnectivity.o (485/548) [LB] bin/fixelconnectivity (486/548) [CC] tmp/cmd/fixelcfestats.o (487/548) [LB] bin/fixelcfestats (488/548) [CC] tmp/cmd/fixel2voxel.o (489/548) [LB] bin/fixel2voxel (490/548) [CC] tmp/cmd/fixel2tsf.o (491/548) [LB] bin/fixel2tsf (492/548) [CC] tmp/cmd/fixel2sh.o (493/548) [LB] bin/fixel2sh (494/548) [CC] tmp/cmd/fixel2peaks.o (495/548) [LB] bin/fixel2peaks (496/548) [CC] tmp/cmd/dwiextract.o (497/548) [LB] bin/dwiextract (498/548) [CC] tmp/cmd/dwidenoise.o (499/548) [LB] bin/dwidenoise (500/548) [CC] tmp/cmd/dwi2tensor.o (501/548) [LB] bin/dwi2tensor (502/548) [CC] tmp/cmd/dwi2mask.o (503/548) [LB] bin/dwi2mask (504/548) [CC] tmp/src/dwi/sdeconv/csd.o (505/548) [CC] tmp/cmd/dwi2fod.o (506/548) [CC] tmp/src/dwi/sdeconv/msmt_csd.o (507/548) [LB] bin/dwi2fod (508/548) [CC] tmp/cmd/dwi2adc.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o: In file included from /usr/include/string.h:582, from /usr/include/c++/16/cstring:48, from ./core/app.h:20, from ./core/command.h:25, from cmd/dwi2adc.cpp:17: In function ‘void* memcpy(void*, const void*, size_t)’, inlined from ‘static void Eigen::internal::smart_copy_helper::run(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:527:11, inlined from ‘void Eigen::internal::smart_copy(const T*, const T*, T*) [with T = double]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/util/Memory.h:517:65, inlined from ‘Eigen::DenseStorage::DenseStorage(const Eigen::DenseStorage&) [with T = double; int _Cols = 1; int _Options = 0]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/DenseStorage.h:593:27, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘DWI2ADC::DWI2ADC(const DWI2ADC&)’ at cmd/dwi2adc.cpp:50:7, inlined from ‘MR::{anonymous}::ThreadedLoopRunInner::ThreadedLoopRunInner(const MR::vector&, const MR::vector&, const Functor&, ImageType& ...) [with int N = 2; Functor = DWI2ADC; ImageType = {MR::Image, MR::Image}]’ at ./core/algo/threaded_loop.h:276:11, inlined from ‘void MR::{anonymous}::ThreadedLoopRunOuter::run(Functor&&, ImageType&& ...) [with Functor = DWI2ADC; ImageType = {MR::Image&, MR::Image&}; OuterLoopType = MR::LoopAlongDynamicAxesProgress]’ at ./core/algo/threaded_loop.h:376:19, inlined from ‘void run()’ at cmd/dwi2adc.cpp:110:10: /usr/include/bits/string_fortified.h:29:33: warning: ‘*(__int128 unsigned*)result’ may be used uninitialized [-Wmaybe-uninitialized] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ (509/548) [LB] bin/dwi2adc (510/548) [CC] tmp/cmd/dirstat.o (511/548) [LB] bin/dirstat (512/548) [CC] tmp/cmd/dirsplit.o (513/548) [LB] bin/dirsplit (514/548) [CC] tmp/cmd/dirorder.o (515/548) [LB] bin/dirorder (516/548) [CC] tmp/cmd/dirmerge.o (517/548) [LB] bin/dirmerge (518/548) [CC] tmp/cmd/dirgen.o (519/548) [LB] bin/dirgen (520/548) [CC] tmp/cmd/dirflip.o (521/548) [LB] bin/dirflip (522/548) [CC] tmp/cmd/dcminfo.o (523/548) [LB] bin/dcminfo (524/548) [CC] tmp/cmd/dcmedit.o (525/548) [LB] bin/dcmedit (526/548) [CC] tmp/cmd/connectomestats.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o: In file included from src/connectome/enhance.h:26, from cmd/connectomestats.cpp:28: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (527/548) [CC] tmp/src/connectome/enhance.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o: In file included from src/connectome/enhance.h:26, from src/connectome/enhance.cpp:17: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (528/548) [LB] bin/connectomestats (529/548) [CC] tmp/cmd/connectomeedit.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/connectomeedit.cpp -o tmp/cmd/connectomeedit.o: In file included from src/connectome/enhance.h:26, from cmd/connectomeedit.cpp:18: src/stats/enhance.h:49:22: warning: ‘virtual void MR::Stats::EnhancerBase::operator()(in_column_type, out_column_type) const’ was hidden [-Woverloaded-virtual=] 49 | virtual void operator() (in_column_type, out_column_type) const = 0; | ^~~~~~~~ In file included from src/connectome/enhance.h:27: src/stats/tfce.h:51:24: note: by ‘virtual void MR::Stats::TFCE::EnhancerBase::operator()(MR::Stats::EnhancerBase::in_column_type, MR::Stats::TFCE::value_type, MR::Stats::EnhancerBase::out_column_type) const’ 51 | virtual void operator() (in_column_type /*input_statistics*/, const value_type /*threshold*/, out_column_type /*enhanced_statistics*/) const = 0; | ^~~~~~~~ (530/548) [LB] bin/connectomeedit (531/548) [CC] tmp/src/dwi/tractography/connectome/exemplar.o (532/548) [CC] tmp/cmd/connectome2tck.o (533/548) [CC] tmp/src/dwi/tractography/connectome/extract.o (534/548) [LB] bin/connectome2tck (535/548) [CC] tmp/cmd/amp2sh.o (536/548) [LB] bin/amp2sh (537/548) [CC] tmp/cmd/amp2response.o (538/548) [LB] bin/amp2response (539/548) [CC] tmp/cmd/afdconnectivity.o g++ -c -std=c++11 -DMRTRIX_BUILD_TYPE="release version" -pthread -fPIC -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DMRTRIX_WORD64 -DMRTRIX_HAVE_EIGEN_UNSUPPORTED_SPECIAL_FUNCTIONS -DWITH_GZFILEOP -DMRTRIX_TIFF_SUPPORT -isystem /usr/include/webp -DWITH_GZFILEOP -DMRTRIX_PNG_SUPPORT -isystem /usr/include/libpng16 -DWITH_GZFILEOP -DEIGEN_FFTW_DEFAULT -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o: In file included from src/dwi/tractography/SIFT/model_base.h:21, from cmd/afdconnectivity.cpp:26: src/dwi/tractography/mapping/fixel_td_map.h: In instantiation of ‘class MR::DWI::Tractography::Mapping::Fixel_TD_map’: src/dwi/tractography/SIFT/model_base.h:124:15: required from ‘class MR::DWI::Tractography::SIFT::ModelBase’ 124 | class ModelBase : public Mapping::Fixel_TD_map | ^~~~~~~~~ cmd/afdconnectivity.cpp:123:57: required from here 123 | class AFDConnectivity : public DWI::Tractography::SIFT::ModelBase | ^~~~~~~~~~~~~~~~ src/dwi/fixel_map.h:187:10: warning: ‘bool MR::DWI::Fixel_map::operator()(const MR::DWI::FMLS::FOD_lobes&) [with Fixel = Fixel]’ was hidden [-Woverloaded-virtual=] 187 | bool Fixel_map::operator() (const FMLS::FOD_lobes& in) | ^~~~~~~~~~~~~~~~ In file included from src/dwi/tractography/SIFT/model_base.h:30: src/dwi/tractography/mapping/fixel_td_map.h:70:14: note: by ‘bool MR::DWI::Tractography::Mapping::Fixel_TD_map::operator()(const MR::DWI::Tractography::Mapping::SetDixel&) [with Fixel = Fixel]’ 70 | bool Fixel_TD_map::operator() (const SetDixel& in) | ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Core:294, from /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/Geometry:11, from ./core/types.h:78, from ./core/mrtrix.h:37, from ./core/cmdline_option.h:28, from ./core/app.h:29, from ./core/command.h:25, from cmd/afdconnectivity.cpp:17: In copy constructor ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::PlainObjectBase&) [with Derived = Eigen::Matrix]’, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>&) [with _Scalar = double; int _Rows = 3; int _Cols = 1; int _Options = 0; int _MaxRows = 3; int _MaxCols = 1]’ at /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/Matrix.h:414:65, inlined from ‘MR::DWI::Tractography::SIFT::FixelBase::FixelBase(const MR::DWI::Tractography::SIFT::FixelBase&)’ at src/dwi/tractography/SIFT/model_base.h:89:13, inlined from ‘Fixel::Fixel(const Fixel&)’ at cmd/afdconnectivity.cpp:107:70, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/new_allocator.h:203:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Fixel; _Args = {Fixel}; _Tp = Fixel]’ at /usr/include/c++/16/bits/alloc_traits.h:714:17, inlined from ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Fixel}; _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/vector.tcc:121:30, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Fixel; _Alloc = std::allocator]’ at /usr/include/c++/16/bits/stl_vector.h:1424:21, inlined from ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’ at src/dwi/fixel_map.h:47:28: /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/eigen-3.4.0/Eigen/src/Core/PlainObjectBase.h:512:17: warning: ‘.Fixel::.MR::DWI::Tractography::SIFT::FixelBase::dir.Eigen::Matrix::.Eigen::PlainObjectBase >::m_storage’ may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/dwi/fixel_map.h: In constructor ‘MR::DWI::Fixel_map::Fixel_map(const MR::Header&) [with Fixel = Fixel]’: src/dwi/fixel_map.h:47:29: note: ‘’ declared here 47 | fixels.push_back (Fixel()); | ^~~~~~~ (540/548) [LB] bin/afdconnectivity (541/548) [CC] tmp/cmd/5ttedit.o (542/548) [LB] bin/5ttedit (543/548) [CC] tmp/cmd/5ttcheck.o (544/548) [LB] bin/5ttcheck (545/548) [CC] tmp/cmd/5tt2vis.o (546/548) [LB] bin/5tt2vis (547/548) [CC] tmp/cmd/5tt2gmwmi.o (548/548) [LB] bin/5tt2gmwmi + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wMpQlF + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + '[' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT ++ dirname /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build + mkdir /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3 + mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin + cp -a bin /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a lib /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + cp -a share /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/ + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + binary_name=5tt2gmwmi + '[' 5tt2gmwmi '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2gmwmi /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2gmwmi + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + binary_name=5tt2vis + '[' 5tt2vis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5tt2vis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5tt2vis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + binary_name=5ttcheck + '[' 5ttcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + binary_name=5ttedit + '[' 5ttedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + binary_name=5ttgen + '[' 5ttgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/5ttgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/5ttgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + binary_name=afdconnectivity + '[' afdconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/afdconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/afdconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + binary_name=amp2response + '[' amp2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + binary_name=amp2sh + '[' amp2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/amp2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/amp2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + binary_name=blend + '[' blend '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/blend /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/blend + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + binary_name=connectome2tck + '[' connectome2tck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectome2tck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectome2tck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + binary_name=connectomeedit + '[' connectomeedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomeedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomeedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + binary_name=connectomestats + '[' connectomestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/connectomestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/connectomestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + binary_name=convert_bruker + '[' convert_bruker '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/convert_bruker /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/convert_bruker + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + binary_name=dcmedit + '[' dcmedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcmedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcmedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + binary_name=dcminfo + '[' dcminfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dcminfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dcminfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + binary_name=dirflip + '[' dirflip '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirflip /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirflip + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + binary_name=dirgen + '[' dirgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + binary_name=dirmerge + '[' dirmerge '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirmerge /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirmerge + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + binary_name=dirorder + '[' dirorder '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirorder /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirorder + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + binary_name=dirsplit + '[' dirsplit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirsplit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirsplit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + binary_name=dirstat + '[' dirstat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dirstat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dirstat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + binary_name=dwi2adc + '[' dwi2adc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2adc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2adc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + binary_name=dwi2fod + '[' dwi2fod '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2fod /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2fod + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + binary_name=dwi2mask + '[' dwi2mask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2mask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2mask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + binary_name=dwi2response + '[' dwi2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + binary_name=dwi2tensor + '[' dwi2tensor '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwi2tensor /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwi2tensor + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + binary_name=dwibiascorrect + '[' dwibiascorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwibiascorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwibiascorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + binary_name=dwicat + '[' dwicat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwicat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwicat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + binary_name=dwidenoise + '[' dwidenoise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwidenoise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwidenoise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + binary_name=dwiextract + '[' dwiextract '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwiextract /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwiextract + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + binary_name=dwifslpreproc + '[' dwifslpreproc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwifslpreproc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwifslpreproc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + binary_name=dwigradcheck + '[' dwigradcheck '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwigradcheck /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwigradcheck + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + binary_name=dwinormalise + '[' dwinormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwinormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwinormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + binary_name=dwishellmath + '[' dwishellmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/dwishellmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/dwishellmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + binary_name=fixel2peaks + '[' fixel2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + binary_name=fixel2sh + '[' fixel2sh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2sh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2sh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + binary_name=fixel2tsf + '[' fixel2tsf '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2tsf /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2tsf + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + binary_name=fixel2voxel + '[' fixel2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixel2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixel2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + binary_name=fixelcfestats + '[' fixelcfestats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcfestats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcfestats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + binary_name=fixelconnectivity + '[' fixelconnectivity '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconnectivity /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconnectivity + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + binary_name=fixelconvert + '[' fixelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + binary_name=fixelcorrespondence + '[' fixelcorrespondence '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcorrespondence /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcorrespondence + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + binary_name=fixelcrop + '[' fixelcrop '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelcrop /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelcrop + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + binary_name=fixelfilter + '[' fixelfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + binary_name=fixelreorient + '[' fixelreorient '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fixelreorient /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fixelreorient + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + binary_name=fod2dec + '[' fod2dec '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2dec /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2dec + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + binary_name=fod2fixel + '[' fod2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/fod2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/fod2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + binary_name=for_each + '[' for_each '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/for_each /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/for_each + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + binary_name=gen_scheme + '[' gen_scheme '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/gen_scheme /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/gen_scheme + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + binary_name=label2colour + '[' label2colour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2colour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2colour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + binary_name=label2mesh + '[' label2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/label2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/label2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + binary_name=labelconvert + '[' labelconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + binary_name=labelsgmfix + '[' labelsgmfix '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelsgmfix /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelsgmfix + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + binary_name=labelstats + '[' labelstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/labelstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/labelstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + binary_name=maskdump + '[' maskdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + binary_name=maskfilter + '[' maskfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/maskfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/maskfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + binary_name=mesh2voxel + '[' mesh2voxel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mesh2voxel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mesh2voxel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + binary_name=meshconvert + '[' meshconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + binary_name=meshfilter + '[' meshfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/meshfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/meshfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + binary_name=mraverageheader + '[' mraverageheader '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mraverageheader /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mraverageheader + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + binary_name=mrcalc + '[' mrcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + binary_name=mrcat + '[' mrcat '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcat /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcat + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + binary_name=mrcentroid + '[' mrcentroid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcentroid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcentroid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + binary_name=mrcheckerboardmask + '[' mrcheckerboardmask '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcheckerboardmask /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcheckerboardmask + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + binary_name=mrclusterstats + '[' mrclusterstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrclusterstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrclusterstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + binary_name=mrcolour + '[' mrcolour '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrcolour /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrcolour + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + binary_name=mrconvert + '[' mrconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + binary_name=mrdegibbs + '[' mrdegibbs '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdegibbs /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdegibbs + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + binary_name=mrdump + '[' mrdump '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrdump /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrdump + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + binary_name=mredit + '[' mredit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mredit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mredit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + binary_name=mrfilter + '[' mrfilter '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrfilter /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrfilter + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + binary_name=mrgrid + '[' mrgrid '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrgrid /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrgrid + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + binary_name=mrhistmatch + '[' mrhistmatch '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistmatch /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistmatch + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + binary_name=mrhistogram + '[' mrhistogram '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrhistogram /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrhistogram + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + binary_name=mrinfo + '[' mrinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + binary_name=mrmath + '[' mrmath '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmath /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmath + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + binary_name=mrmetric + '[' mrmetric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrmetric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrmetric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + binary_name=mrregister + '[' mrregister '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrregister /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrregister + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + binary_name=mrstats + '[' mrstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + binary_name=mrthreshold + '[' mrthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + binary_name=mrtransform + '[' mrtransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + binary_name=mrtrix3.py + '[' mrtrix3.py '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix3.py /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix3.py + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + binary_name=mrtrix_cleanup + '[' mrtrix_cleanup '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrtrix_cleanup /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrtrix_cleanup + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + binary_name=mrview + '[' mrview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mrview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mrview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + binary_name=mtnormalise + '[' mtnormalise '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/mtnormalise /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/mtnormalise + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + binary_name=notfound + '[' notfound '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/notfound /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/notfound + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + binary_name=peaks2amp + '[' peaks2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + binary_name=peaks2fixel + '[' peaks2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/peaks2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/peaks2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + binary_name=population_template + '[' population_template '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/population_template /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/population_template + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + binary_name=responsemean + '[' responsemean '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/responsemean /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/responsemean + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + binary_name=sh2amp + '[' sh2amp '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2amp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2amp + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + binary_name=sh2peaks + '[' sh2peaks '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2peaks /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2peaks + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + binary_name=sh2power + '[' sh2power '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2power /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2power + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + binary_name=sh2response + '[' sh2response '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/sh2response /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/sh2response + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + binary_name=shbasis + '[' shbasis '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shbasis /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shbasis + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + binary_name=shconv + '[' shconv '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shconv /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shconv + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + binary_name=shview + '[' shview '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/shview /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/shview + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + binary_name=tck2connectome + '[' tck2connectome '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2connectome /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2connectome + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + binary_name=tck2fixel + '[' tck2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tck2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tck2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + binary_name=tckconvert + '[' tckconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + binary_name=tckdfc + '[' tckdfc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckdfc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckdfc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + binary_name=tckedit + '[' tckedit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckedit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckedit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + binary_name=tckgen + '[' tckgen '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckgen /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckgen + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + binary_name=tckglobal + '[' tckglobal '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckglobal /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckglobal + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + binary_name=tckinfo + '[' tckinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + binary_name=tckmap + '[' tckmap '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckmap /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckmap + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + binary_name=tckresample + '[' tckresample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckresample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckresample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + binary_name=tcksample + '[' tcksample '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksample /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksample + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + binary_name=tcksift + '[' tcksift '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + binary_name=tcksift2 + '[' tcksift2 '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcksift2 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcksift2 + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + binary_name=tckstats + '[' tckstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tckstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tckstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + binary_name=tcktransform + '[' tcktransform '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tcktransform /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tcktransform + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + binary_name=tensor2metric + '[' tensor2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tensor2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tensor2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + binary_name=transformcalc + '[' transformcalc '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcalc /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcalc + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + binary_name=transformcompose + '[' transformcompose '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformcompose /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformcompose + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + binary_name=transformconvert + '[' transformconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/transformconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/transformconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + binary_name=tsfdivide + '[' tsfdivide '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfdivide /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfdivide + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + binary_name=tsfinfo + '[' tsfinfo '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfinfo /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfinfo + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + binary_name=tsfmult + '[' tsfmult '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfmult /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfmult + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + binary_name=tsfsmooth + '[' tsfsmooth '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfsmooth /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfsmooth + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + binary_name=tsfthreshold + '[' tsfthreshold '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfthreshold /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfthreshold + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + binary_name=tsfvalidate + '[' tsfvalidate '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/tsfvalidate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/tsfvalidate + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + binary_name=vectorstats + '[' vectorstats '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/vectorstats /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/vectorstats + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + binary_name=voxel2fixel + '[' voxel2fixel '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2fixel /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2fixel + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + binary_name=voxel2mesh + '[' voxel2mesh '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/voxel2mesh /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/voxel2mesh + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + binary_name=warp2metric + '[' warp2metric '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warp2metric /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warp2metric + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + binary_name=warpconvert + '[' warpconvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpconvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpconvert + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + binary_name=warpcorrect + '[' warpcorrect '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpcorrect /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpcorrect + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + binary_name=warpinit + '[' warpinit '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinit /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinit + for b in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* ++ basename /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + binary_name=warpinvert + '[' warpinvert '!=' python ']' + ln -s /usr/lib64/mrtrix3/bin/warpinvert /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/bin/warpinvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2gmwmi + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5tt2vis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/5ttgen + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/afdconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/amp2sh + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/blend + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectome2tck + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomeedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/connectomestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/convert_bruker + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcmedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dcminfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirflip + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirmerge + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirorder + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirsplit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dirstat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2adc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2fod + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2mask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2response + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwi2tensor + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwibiascorrect + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwicat + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwidenoise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwiextract + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwifslpreproc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwigradcheck + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwinormalise + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/dwishellmath + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2peaks + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2sh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2tsf + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixel2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcfestats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconnectivity + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcorrespondence + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelcrop + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fixelreorient + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2dec + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/fod2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/for_each + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/gen_scheme + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2colour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/label2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelconvert + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelsgmfix + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/labelstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskdump + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/maskfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mesh2voxel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/meshfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mraverageheader + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcalc + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcat + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcentroid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcheckerboardmask + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrclusterstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrcolour + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdegibbs + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrdump + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mredit + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrfilter + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrgrid + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistmatch + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrhistogram + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmath + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrmetric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrregister + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtransform + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix3.py + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrtrix_cleanup + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mrview + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/mtnormalise + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/notfound + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/peaks2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/population_template + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + grep -q python Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + echo 'Fixing shebang in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean' + sed -i '1s|^#!.*|#!/usr/bin/python3|' /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/responsemean + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2amp + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2peaks + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2power + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/sh2response + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shbasis + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shconv + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/shview + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2connectome + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tck2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckdfc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckedit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckgen + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckglobal + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckmap + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckresample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksample + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcksift2 + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tckstats + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tcktransform + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tensor2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcalc + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformcompose + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/transformconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfdivide + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfinfo + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult ']' + grep -q python + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfmult + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfsmooth + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfthreshold + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/tsfvalidate + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/vectorstats + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2fixel + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/voxel2mesh + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warp2metric + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpconvert + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpcorrect + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinit + grep -q python + for f in /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/* + '[' -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert ']' + head -n 1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/lib64/mrtrix3/bin/warpinvert + grep -q python + desktop-file-install --dir=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications --set-key=Version --set-value=1.0 --remove-key=Value --set-key=Keywords '--set-value=MRI;diffusion;tractography;DWI;neuroimaging;' --set-key=Categories '--set-value=Science;MedicalSoftware;' mrview.desktop + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/16x16/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/32x32/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/48x48/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/64x64/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/application-x-mrtrix.png + for s in 16 32 48 64 128 + install -Dpm0644 icons/desktop/128x128/mrtrix.png /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/application-x-mrtrix.png + cat + install -Dpm0644 mrtrix3-mime.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/mime/packages/mrtrix3.xml + install -Dpm 0644 /builddir/build/SOURCES/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + appstream-util validate-relax --nonet /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml: OK + /usr/bin/find-debuginfo -j1 --strict-build-id -m -i --build-id-seed 3.0.8-7.fc46 --unique-debug-suffix -3.0.8-7.fc46.x86_64 --unique-debug-src-base mrtrix3-3.0.8-7.fc46.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8 find-debuginfo: starting Extracting debug info from 113 files DWARF-compressing 113 files sepdebugcrcfix: Updated 113 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mrtrix3-3.0.8-7.fc46.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-7.fc46.x86_64/eigen-3.4.0/Eigen/src/Core/util/Meta.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-7.fc46.x86_64/eigen-3.4.0/Eigen/src/Core/util/BlasUtil.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/mrtrix3-3.0.8-7.fc46.x86_64/eigen-3.4.0/Eigen/src/Core/arch/SSE/PacketMath.h is executable but has no shebang, removing executable bit mangling shebang in /usr/lib64/mrtrix3/bin/notfound from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/lib64/mrtrix3/bin/gen_scheme from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j1 /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Scanned 153 directories and 1395 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr Scanned 152 directories and 1395 files, considered 1265 files, read 71 files, linked 3 files, 0 errors sum of sizes of linked files: 0 bytes Reading /builddir/build/BUILD/mrtrix3-3.0.8-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.WjqD6O + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mrtrix3-3.0.8 + desktop-file-validate /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/applications/mrview.desktop + test -f /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/metainfo/mrview.metainfo.xml + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mrtrix3-3.0.8-7.fc46.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.nAxLUk + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + DOCDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/README.md /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/doc/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.FvSFZW + umask 022 + cd /builddir/build/BUILD/mrtrix3-3.0.8-build + cd mrtrix3-3.0.8 + LICENSEDIR=/builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + cp -pr /builddir/build/BUILD/mrtrix3-3.0.8-build/mrtrix3-3.0.8/LICENCE.txt /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT/usr/share/licenses/mrtrix3 + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi warning: absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis warning: absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck warning: absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit warning: absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen warning: absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity warning: absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response warning: absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh warning: absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend warning: absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck warning: absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit warning: absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats warning: absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker warning: absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit warning: absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo warning: absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip warning: absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen warning: absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge warning: absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder warning: absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit warning: absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat warning: absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc warning: absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod warning: absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask warning: absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response warning: absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor warning: absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect warning: absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat warning: absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise warning: absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract warning: absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc warning: absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck warning: absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise warning: absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath warning: absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks warning: absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh warning: absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf warning: absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel warning: absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats warning: absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity warning: absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert warning: absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence warning: absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop warning: absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter warning: absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient warning: absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec warning: absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel warning: absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each warning: absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme warning: absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour warning: absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh warning: absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert warning: absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix warning: absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats warning: absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump warning: absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter warning: absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel warning: absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert warning: absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter warning: absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader warning: absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc warning: absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat warning: absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid warning: absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask warning: absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats warning: absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour warning: absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert warning: absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs warning: absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump warning: absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit warning: absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter warning: absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid warning: absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch warning: absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram warning: absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo warning: absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath warning: absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric warning: absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister warning: absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats warning: absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold warning: absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform warning: absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py warning: absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup warning: absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview warning: absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise warning: absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound warning: absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp warning: absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel warning: absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template warning: absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean warning: absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp warning: absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks warning: absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power warning: absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response warning: absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis warning: absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv warning: absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview warning: absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome warning: absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel warning: absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert warning: absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc warning: absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit warning: absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen warning: absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal warning: absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo warning: absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap warning: absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample warning: absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample warning: absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift warning: absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 warning: absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats warning: absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform warning: absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric warning: absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc warning: absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose warning: absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert warning: absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide warning: absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo warning: absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult warning: absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth warning: absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold warning: absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate warning: absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats warning: absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel warning: absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh warning: absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric warning: absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert warning: absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect warning: absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit warning: absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Provides: application() application(mrview.desktop) bundled(eigen3) = 3.4.0 libmrtrix.so()(64bit) metainfo() metainfo(mrview.metainfo.xml) mimehandler(application/x-image-analyze) mimehandler(application/x-image-mgh) mimehandler(application/x-image-mgz) mimehandler(application/x-mrtrix) mimehandler(application/x-mrtrix-gz) mimehandler(application/x-nifti) mimehandler(application/x-nifti-gz) mrtrix3 = 3.0.8-7.fc46 mrtrix3(x86-64) = 3.0.8-7.fc46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/python3 libGL.so.1()(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libc.so.6(GLIBC_ABI_GNU2_TLS)(64bit) libfftw3.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.43)(64bit) libmrtrix.so()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.17)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: mrtrix3-debugsource-3.0.8-7.fc46.x86_64 Provides: mrtrix3-debugsource = 3.0.8-7.fc46 mrtrix3-debugsource(x86-64) = 3.0.8-7.fc46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mrtrix3-debuginfo-3.0.8-7.fc46.x86_64 Provides: debuginfo(build-id) = 012de43a62aa66e3cbe6cfa052af61debfa10364 debuginfo(build-id) = 01319ec0189b03b3e1015bb671ee1d179642e417 debuginfo(build-id) = 02f52b9f8cb83759e2727f29d701e042d9096e35 debuginfo(build-id) = 033542f64ba31181590a66d94dcb807e08d26982 debuginfo(build-id) = 03713038923396abda84bbfdc920ac944620d900 debuginfo(build-id) = 093a338dd307d5ee5b550146c4337e391c57cecc debuginfo(build-id) = 10ce66fdbbb8fcdc896aea893f325034f58188cc debuginfo(build-id) = 1250e18c1191cfbde9224958033c6aa8795ec587 debuginfo(build-id) = 13b15cf2e460b3fdf725916fddcb0ad79b209d67 debuginfo(build-id) = 163b970672899a594abc7f4c33d40192a02c2e06 debuginfo(build-id) = 169cda668f18eea5fb255e25fe723b19ef441456 debuginfo(build-id) = 16f4a57825d22fdc599e817da1f32ae9d64286d1 debuginfo(build-id) = 191897f49e4321b23b5c2335ca0ce3d2dc89f778 debuginfo(build-id) = 19337c8cb0bdce3365aa48b39bea7afd45eb17d9 debuginfo(build-id) = 1bf123cfeb8394617080c95f127062fcab2987e2 debuginfo(build-id) = 1da24e8dcf3ae0f0a1dc8fa9fc736f255e61ba35 debuginfo(build-id) = 1f84eb402473852121e5150416e174f11a41183f debuginfo(build-id) = 27400428bd42c5db17fdfed4491d1d29eeca5d81 debuginfo(build-id) = 277a9d9071f9e9a4e136c2ba5b8ab2e4f62db47e debuginfo(build-id) = 2851814fcc24328b8e917babe2b005279d5cbec4 debuginfo(build-id) = 2a68de0f533791fb6fccdd2cfd5d3f44e64f8643 debuginfo(build-id) = 2bbac8d96710fcdb420edb2cb9b66d30e6a0212c debuginfo(build-id) = 31da6a8b9e12bb48a6ac46da8463f7884c49bf06 debuginfo(build-id) = 332f1dbf12c745d7760e66f036746808f75dddc1 debuginfo(build-id) = 3365df71a5c426af39412bf82103d8c952d05400 debuginfo(build-id) = 37c9df3645c1c8fa37dc1de62fe66a2fcd8c935c debuginfo(build-id) = 3863f330e13895a16258d4500097cd3efb4ca9dc debuginfo(build-id) = 3af76f04fa5d5a7215f9ce4821008590b04f998b debuginfo(build-id) = 4004c9c534049d53740f4954dc8becddbb70171f debuginfo(build-id) = 409b6f1e085cd8ee3d8fe75f626d903e219fe246 debuginfo(build-id) = 43825cc33f13c91712e5b0b3a7eef282030461e7 debuginfo(build-id) = 45f6019bac8a0059879b2c3408277f12615eb8d3 debuginfo(build-id) = 49154e8779a7f64b58a663b520142b13b7f8c403 debuginfo(build-id) = 4a7a4cdc600d880f6698c12164033834090408f2 debuginfo(build-id) = 4d419def107d82c014bd43ee7c9a61cd82bcef2e debuginfo(build-id) = 4ec6a8a0cf89268ec4c3aa176331b18a50b56fca debuginfo(build-id) = 4fa29b4d33087bbc9f3218937ffbd9cded8ff57d debuginfo(build-id) = 510d17ad059f842364ca9fa25bc823645a1a1a43 debuginfo(build-id) = 58bdaa357e43a1b7678ce362041ae88355ad39da debuginfo(build-id) = 58fac3b78a1154d58382754758cbc3a9ba3cf1c8 debuginfo(build-id) = 5958bf831666ab44cfbd95187508051100abb155 debuginfo(build-id) = 5b1b6041e29961b4a0cfd8375e5ece9d30399666 debuginfo(build-id) = 5b2ae476e3f9ed92531f139b72fa103abd3d19f9 debuginfo(build-id) = 5c6c856e855a30f8a65ddbc950cc8cc81277537c debuginfo(build-id) = 5d27d628d786bcc61186b93000a6ec950c92f88f debuginfo(build-id) = 5e58e5c11fe8bc227be27018fff7d64356e59e78 debuginfo(build-id) = 63b9f743036361a19934f9bd7f821c5047a25899 debuginfo(build-id) = 655c4da1e6387b7e30635e2b407f96afb6c313ca debuginfo(build-id) = 66b6a7ebfe5b825bf87bc6e1ed991ee5b6414ef1 debuginfo(build-id) = 680bb543bdceed05ebc2e38cee60ce79b044568a debuginfo(build-id) = 6a2f70573e1ce5947c8b754329f7cac7cc892825 debuginfo(build-id) = 6c107a833ece998a4db756703eef311ed86d6ec1 debuginfo(build-id) = 6c71b1816df2be6566264ca3be54cd594a6abc31 debuginfo(build-id) = 6e42960b6f02d2b2cbf23d5dd5e85e53b0a07a24 debuginfo(build-id) = 702c892059dd32d38cf4e2a649e47eebe9f9d211 debuginfo(build-id) = 721f708a0b7a9d73e20e3787eebbb456883eab67 debuginfo(build-id) = 72223f0caa58ecd5ccfa1bdd3510947a64e4916b debuginfo(build-id) = 7445ac2ce4c9b8ec2411c95d7834da56d7fa991e debuginfo(build-id) = 780e360acd18ad8c51471d9b634b281721bbf44a debuginfo(build-id) = 78a927b26636fbb3dfc94fe73b8c35a78fb0b2d0 debuginfo(build-id) = 795d4eefbdfd7cad5a703ee40d71d55f31d4f27c debuginfo(build-id) = 7cbb02cb067c10031b3c127ac771fe924e6cd381 debuginfo(build-id) = 8687c6d2f3df522f2f29524e5fe2f2a22e5aff1b debuginfo(build-id) = 874dd2d381d3daab096b0951bf121bc2c4ecaf64 debuginfo(build-id) = 888843b68c5088d28e3e6c817e1a040699e9bad4 debuginfo(build-id) = 8ca3a940fd02a55ef43fff1477f758ce91857964 debuginfo(build-id) = 8f0f4a4dc2539edea9d87b69915907896fbddeb7 debuginfo(build-id) = 92ff1aecf3a5a4a68e0f35292bc46a080ba1115b debuginfo(build-id) = 943a1e8f1ed4d4579bb7ca4a396eb0c0a74ba0b2 debuginfo(build-id) = 9d5a939cbfc135e74ba6c84206362679f629f715 debuginfo(build-id) = 9dea152305364165f2ba3d66f66450eeb40189f4 debuginfo(build-id) = 9e242bc64687968c66c752034c1eee5efd26ba32 debuginfo(build-id) = 9ea87ee7c855177d8d97504467c9a86233cc0653 debuginfo(build-id) = a360dc9104037385216c57faa100699ac9905de6 debuginfo(build-id) = a4210922ec06f0c3ae6922f247ad17f8e9c8c43d debuginfo(build-id) = ac55787483463327cbf3d802aebed0953e169ce6 debuginfo(build-id) = b230e3b99ab49b6b633c7d811b43d6786d5d2a18 debuginfo(build-id) = b330f64300f7e28bcd958fe7404be9569739807d debuginfo(build-id) = b516939a7be06ed6cb3198f1a99c95dc2d71c2da debuginfo(build-id) = b966562fbc24dd02be9c68f6bd0a7e951a1bc915 debuginfo(build-id) = bc2394ae49445c7993a850111810ec07a7c59188 debuginfo(build-id) = bda0394267a82d62472c4b878094c882074852f1 debuginfo(build-id) = be882b68621c529d46aad9e1e937ec5ee5f2199c debuginfo(build-id) = c335fbadd4dce7feb5e07ace9aad13fdb46a5ad1 debuginfo(build-id) = c3927e253ef34543ed8e967dd883ee147b594e09 debuginfo(build-id) = c3a4213fadea597658fb8c371f9406f0ff43a52c debuginfo(build-id) = cb63a97ab7866c061e04e91f898a13f4b7dcadcc debuginfo(build-id) = cb9ebda26fa93e60f3c78ad4241cb0396d24253a debuginfo(build-id) = cdc7b99e22c2afccbeebe1b8b9e14d4534da3d7c debuginfo(build-id) = ce598d2ee30711455eea6f14526efbe140d4c539 debuginfo(build-id) = d00360cc489a256ab88624178d1da6d3cd409916 debuginfo(build-id) = d570723edc87f3268c19ec6859dc76d853a19273 debuginfo(build-id) = d717ea4fd6c1e86d8947bcd6d7025d5038d1ca40 debuginfo(build-id) = dadc879a5d8c1dde39364ef5b03be6eafc41c853 debuginfo(build-id) = dba6cd362cb9d17e73d4cf1a796b2d93943a88dd debuginfo(build-id) = df3dd48cf0e9f09e2f460adf93a45c489fc99ab3 debuginfo(build-id) = e0d163e7ca6921ef5670beff408ea04b8554ede8 debuginfo(build-id) = e36f91c987c0ebfb33d9023fd5e29836486fd994 debuginfo(build-id) = e3e81872f19e4a5ad2b49a1a6a01872a1743cbbe debuginfo(build-id) = e65d3df6215bc671521d0f10768d15cd3a5e2605 debuginfo(build-id) = e8cac4b4d551a4aaf986c38a7b6d0ff0c54b48df debuginfo(build-id) = ead4cef6053bd235209241232a74c4b718103115 debuginfo(build-id) = ec3ba3757f987ee8b7dd01e323a56ea5ba07bc39 debuginfo(build-id) = ee48c40533292c76c282df7c62d3951e0bcd62aa debuginfo(build-id) = f2f3ae45148476b4119070225a57aaf69cf6a978 debuginfo(build-id) = f2f5f0d2d8e65313ba3a71d8e337b983b32ad699 debuginfo(build-id) = f4862a8d9755f4dcae043b0742cacdb2ef84bcb2 debuginfo(build-id) = f57d3ac2d8b18e149595bd4a09251f52a4042687 debuginfo(build-id) = f5ebe6a709da2e9fb2cadc0c24f3829a5645d00d debuginfo(build-id) = fa943c8210ad87cc0dbafec076a2babbfeebbf16 debuginfo(build-id) = ff000277dc371849258a6282f722f9d921f78068 debuginfo(build-id) = ff8d84a9967b092c0065ca7496e410b974ad34df debuginfo(build-id) = ffda2c07009af6a3857a02b0baed019704e33ac7 libmrtrix.so-3.0.8-7.fc46.x86_64.debug()(64bit) mrtrix3-debuginfo = 3.0.8-7.fc46 mrtrix3-debuginfo(x86-64) = 3.0.8-7.fc46 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mrtrix3-debugsource(x86-64) = 3.0.8-7.fc46 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mrtrix3-3.0.8-build/BUILDROOT Wrote: /builddir/build/RPMS/mrtrix3-debuginfo-3.0.8-7.fc46.x86_64.rpm Wrote: /builddir/build/RPMS/mrtrix3-3.0.8-7.fc46.x86_64.rpm Wrote: /builddir/build/RPMS/mrtrix3-debugsource-3.0.8-7.fc46.x86_64.rpm RPM build warnings: absolute symlink: /usr/bin/5tt2gmwmi -> /usr/lib64/mrtrix3/bin/5tt2gmwmi absolute symlink: /usr/bin/5tt2vis -> /usr/lib64/mrtrix3/bin/5tt2vis absolute symlink: /usr/bin/5ttcheck -> /usr/lib64/mrtrix3/bin/5ttcheck absolute symlink: /usr/bin/5ttedit -> /usr/lib64/mrtrix3/bin/5ttedit absolute symlink: /usr/bin/5ttgen -> /usr/lib64/mrtrix3/bin/5ttgen absolute symlink: /usr/bin/afdconnectivity -> /usr/lib64/mrtrix3/bin/afdconnectivity absolute symlink: /usr/bin/amp2response -> /usr/lib64/mrtrix3/bin/amp2response absolute symlink: /usr/bin/amp2sh -> /usr/lib64/mrtrix3/bin/amp2sh absolute symlink: /usr/bin/blend -> /usr/lib64/mrtrix3/bin/blend absolute symlink: /usr/bin/connectome2tck -> /usr/lib64/mrtrix3/bin/connectome2tck absolute symlink: /usr/bin/connectomeedit -> /usr/lib64/mrtrix3/bin/connectomeedit absolute symlink: /usr/bin/connectomestats -> /usr/lib64/mrtrix3/bin/connectomestats absolute symlink: /usr/bin/convert_bruker -> /usr/lib64/mrtrix3/bin/convert_bruker absolute symlink: /usr/bin/dcmedit -> /usr/lib64/mrtrix3/bin/dcmedit absolute symlink: /usr/bin/dcminfo -> /usr/lib64/mrtrix3/bin/dcminfo absolute symlink: /usr/bin/dirflip -> /usr/lib64/mrtrix3/bin/dirflip absolute symlink: /usr/bin/dirgen -> /usr/lib64/mrtrix3/bin/dirgen absolute symlink: /usr/bin/dirmerge -> /usr/lib64/mrtrix3/bin/dirmerge absolute symlink: /usr/bin/dirorder -> /usr/lib64/mrtrix3/bin/dirorder absolute symlink: /usr/bin/dirsplit -> /usr/lib64/mrtrix3/bin/dirsplit absolute symlink: /usr/bin/dirstat -> /usr/lib64/mrtrix3/bin/dirstat absolute symlink: /usr/bin/dwi2adc -> /usr/lib64/mrtrix3/bin/dwi2adc absolute symlink: /usr/bin/dwi2fod -> /usr/lib64/mrtrix3/bin/dwi2fod absolute symlink: /usr/bin/dwi2mask -> /usr/lib64/mrtrix3/bin/dwi2mask absolute symlink: /usr/bin/dwi2response -> /usr/lib64/mrtrix3/bin/dwi2response absolute symlink: /usr/bin/dwi2tensor -> /usr/lib64/mrtrix3/bin/dwi2tensor absolute symlink: /usr/bin/dwibiascorrect -> /usr/lib64/mrtrix3/bin/dwibiascorrect absolute symlink: /usr/bin/dwicat -> /usr/lib64/mrtrix3/bin/dwicat absolute symlink: /usr/bin/dwidenoise -> /usr/lib64/mrtrix3/bin/dwidenoise absolute symlink: /usr/bin/dwiextract -> /usr/lib64/mrtrix3/bin/dwiextract absolute symlink: /usr/bin/dwifslpreproc -> /usr/lib64/mrtrix3/bin/dwifslpreproc absolute symlink: /usr/bin/dwigradcheck -> /usr/lib64/mrtrix3/bin/dwigradcheck absolute symlink: /usr/bin/dwinormalise -> /usr/lib64/mrtrix3/bin/dwinormalise absolute symlink: /usr/bin/dwishellmath -> /usr/lib64/mrtrix3/bin/dwishellmath absolute symlink: /usr/bin/fixel2peaks -> /usr/lib64/mrtrix3/bin/fixel2peaks absolute symlink: /usr/bin/fixel2sh -> /usr/lib64/mrtrix3/bin/fixel2sh absolute symlink: /usr/bin/fixel2tsf -> /usr/lib64/mrtrix3/bin/fixel2tsf absolute symlink: /usr/bin/fixel2voxel -> /usr/lib64/mrtrix3/bin/fixel2voxel absolute symlink: /usr/bin/fixelcfestats -> /usr/lib64/mrtrix3/bin/fixelcfestats absolute symlink: /usr/bin/fixelconnectivity -> /usr/lib64/mrtrix3/bin/fixelconnectivity absolute symlink: /usr/bin/fixelconvert -> /usr/lib64/mrtrix3/bin/fixelconvert absolute symlink: /usr/bin/fixelcorrespondence -> /usr/lib64/mrtrix3/bin/fixelcorrespondence absolute symlink: /usr/bin/fixelcrop -> /usr/lib64/mrtrix3/bin/fixelcrop absolute symlink: /usr/bin/fixelfilter -> /usr/lib64/mrtrix3/bin/fixelfilter absolute symlink: /usr/bin/fixelreorient -> /usr/lib64/mrtrix3/bin/fixelreorient absolute symlink: /usr/bin/fod2dec -> /usr/lib64/mrtrix3/bin/fod2dec absolute symlink: /usr/bin/fod2fixel -> /usr/lib64/mrtrix3/bin/fod2fixel absolute symlink: /usr/bin/for_each -> /usr/lib64/mrtrix3/bin/for_each absolute symlink: /usr/bin/gen_scheme -> /usr/lib64/mrtrix3/bin/gen_scheme absolute symlink: /usr/bin/label2colour -> /usr/lib64/mrtrix3/bin/label2colour absolute symlink: /usr/bin/label2mesh -> /usr/lib64/mrtrix3/bin/label2mesh absolute symlink: /usr/bin/labelconvert -> /usr/lib64/mrtrix3/bin/labelconvert absolute symlink: /usr/bin/labelsgmfix -> /usr/lib64/mrtrix3/bin/labelsgmfix absolute symlink: /usr/bin/labelstats -> /usr/lib64/mrtrix3/bin/labelstats absolute symlink: /usr/bin/maskdump -> /usr/lib64/mrtrix3/bin/maskdump absolute symlink: /usr/bin/maskfilter -> /usr/lib64/mrtrix3/bin/maskfilter absolute symlink: /usr/bin/mesh2voxel -> /usr/lib64/mrtrix3/bin/mesh2voxel absolute symlink: /usr/bin/meshconvert -> /usr/lib64/mrtrix3/bin/meshconvert absolute symlink: /usr/bin/meshfilter -> /usr/lib64/mrtrix3/bin/meshfilter absolute symlink: /usr/bin/mraverageheader -> /usr/lib64/mrtrix3/bin/mraverageheader absolute symlink: /usr/bin/mrcalc -> /usr/lib64/mrtrix3/bin/mrcalc absolute symlink: /usr/bin/mrcat -> /usr/lib64/mrtrix3/bin/mrcat absolute symlink: /usr/bin/mrcentroid -> /usr/lib64/mrtrix3/bin/mrcentroid absolute symlink: /usr/bin/mrcheckerboardmask -> /usr/lib64/mrtrix3/bin/mrcheckerboardmask absolute symlink: /usr/bin/mrclusterstats -> /usr/lib64/mrtrix3/bin/mrclusterstats absolute symlink: /usr/bin/mrcolour -> /usr/lib64/mrtrix3/bin/mrcolour absolute symlink: /usr/bin/mrconvert -> /usr/lib64/mrtrix3/bin/mrconvert absolute symlink: /usr/bin/mrdegibbs -> /usr/lib64/mrtrix3/bin/mrdegibbs absolute symlink: /usr/bin/mrdump -> /usr/lib64/mrtrix3/bin/mrdump absolute symlink: /usr/bin/mredit -> /usr/lib64/mrtrix3/bin/mredit absolute symlink: /usr/bin/mrfilter -> /usr/lib64/mrtrix3/bin/mrfilter absolute symlink: /usr/bin/mrgrid -> /usr/lib64/mrtrix3/bin/mrgrid absolute symlink: /usr/bin/mrhistmatch -> /usr/lib64/mrtrix3/bin/mrhistmatch absolute symlink: /usr/bin/mrhistogram -> /usr/lib64/mrtrix3/bin/mrhistogram absolute symlink: /usr/bin/mrinfo -> /usr/lib64/mrtrix3/bin/mrinfo absolute symlink: /usr/bin/mrmath -> /usr/lib64/mrtrix3/bin/mrmath absolute symlink: /usr/bin/mrmetric -> /usr/lib64/mrtrix3/bin/mrmetric absolute symlink: /usr/bin/mrregister -> /usr/lib64/mrtrix3/bin/mrregister absolute symlink: /usr/bin/mrstats -> /usr/lib64/mrtrix3/bin/mrstats absolute symlink: /usr/bin/mrthreshold -> /usr/lib64/mrtrix3/bin/mrthreshold absolute symlink: /usr/bin/mrtransform -> /usr/lib64/mrtrix3/bin/mrtransform absolute symlink: /usr/bin/mrtrix3.py -> /usr/lib64/mrtrix3/bin/mrtrix3.py absolute symlink: /usr/bin/mrtrix_cleanup -> /usr/lib64/mrtrix3/bin/mrtrix_cleanup absolute symlink: /usr/bin/mrview -> /usr/lib64/mrtrix3/bin/mrview absolute symlink: /usr/bin/mtnormalise -> /usr/lib64/mrtrix3/bin/mtnormalise absolute symlink: /usr/bin/notfound -> /usr/lib64/mrtrix3/bin/notfound absolute symlink: /usr/bin/peaks2amp -> /usr/lib64/mrtrix3/bin/peaks2amp absolute symlink: /usr/bin/peaks2fixel -> /usr/lib64/mrtrix3/bin/peaks2fixel absolute symlink: /usr/bin/population_template -> /usr/lib64/mrtrix3/bin/population_template absolute symlink: /usr/bin/responsemean -> /usr/lib64/mrtrix3/bin/responsemean absolute symlink: /usr/bin/sh2amp -> /usr/lib64/mrtrix3/bin/sh2amp absolute symlink: /usr/bin/sh2peaks -> /usr/lib64/mrtrix3/bin/sh2peaks absolute symlink: /usr/bin/sh2power -> /usr/lib64/mrtrix3/bin/sh2power absolute symlink: /usr/bin/sh2response -> /usr/lib64/mrtrix3/bin/sh2response absolute symlink: /usr/bin/shbasis -> /usr/lib64/mrtrix3/bin/shbasis absolute symlink: /usr/bin/shconv -> /usr/lib64/mrtrix3/bin/shconv absolute symlink: /usr/bin/shview -> /usr/lib64/mrtrix3/bin/shview absolute symlink: /usr/bin/tck2connectome -> /usr/lib64/mrtrix3/bin/tck2connectome absolute symlink: /usr/bin/tck2fixel -> /usr/lib64/mrtrix3/bin/tck2fixel absolute symlink: /usr/bin/tckconvert -> /usr/lib64/mrtrix3/bin/tckconvert absolute symlink: /usr/bin/tckdfc -> /usr/lib64/mrtrix3/bin/tckdfc absolute symlink: /usr/bin/tckedit -> /usr/lib64/mrtrix3/bin/tckedit absolute symlink: /usr/bin/tckgen -> /usr/lib64/mrtrix3/bin/tckgen absolute symlink: /usr/bin/tckglobal -> /usr/lib64/mrtrix3/bin/tckglobal absolute symlink: /usr/bin/tckinfo -> /usr/lib64/mrtrix3/bin/tckinfo absolute symlink: /usr/bin/tckmap -> /usr/lib64/mrtrix3/bin/tckmap absolute symlink: /usr/bin/tckresample -> /usr/lib64/mrtrix3/bin/tckresample absolute symlink: /usr/bin/tcksample -> /usr/lib64/mrtrix3/bin/tcksample absolute symlink: /usr/bin/tcksift -> /usr/lib64/mrtrix3/bin/tcksift absolute symlink: /usr/bin/tcksift2 -> /usr/lib64/mrtrix3/bin/tcksift2 absolute symlink: /usr/bin/tckstats -> /usr/lib64/mrtrix3/bin/tckstats absolute symlink: /usr/bin/tcktransform -> /usr/lib64/mrtrix3/bin/tcktransform absolute symlink: /usr/bin/tensor2metric -> /usr/lib64/mrtrix3/bin/tensor2metric absolute symlink: /usr/bin/transformcalc -> /usr/lib64/mrtrix3/bin/transformcalc absolute symlink: /usr/bin/transformcompose -> /usr/lib64/mrtrix3/bin/transformcompose absolute symlink: /usr/bin/transformconvert -> /usr/lib64/mrtrix3/bin/transformconvert absolute symlink: /usr/bin/tsfdivide -> /usr/lib64/mrtrix3/bin/tsfdivide absolute symlink: /usr/bin/tsfinfo -> /usr/lib64/mrtrix3/bin/tsfinfo absolute symlink: /usr/bin/tsfmult -> /usr/lib64/mrtrix3/bin/tsfmult absolute symlink: /usr/bin/tsfsmooth -> /usr/lib64/mrtrix3/bin/tsfsmooth absolute symlink: /usr/bin/tsfthreshold -> /usr/lib64/mrtrix3/bin/tsfthreshold absolute symlink: /usr/bin/tsfvalidate -> /usr/lib64/mrtrix3/bin/tsfvalidate absolute symlink: /usr/bin/vectorstats -> /usr/lib64/mrtrix3/bin/vectorstats absolute symlink: /usr/bin/voxel2fixel -> /usr/lib64/mrtrix3/bin/voxel2fixel absolute symlink: /usr/bin/voxel2mesh -> /usr/lib64/mrtrix3/bin/voxel2mesh absolute symlink: /usr/bin/warp2metric -> /usr/lib64/mrtrix3/bin/warp2metric absolute symlink: /usr/bin/warpconvert -> /usr/lib64/mrtrix3/bin/warpconvert absolute symlink: /usr/bin/warpcorrect -> /usr/lib64/mrtrix3/bin/warpcorrect absolute symlink: /usr/bin/warpinit -> /usr/lib64/mrtrix3/bin/warpinit absolute symlink: /usr/bin/warpinvert -> /usr/lib64/mrtrix3/bin/warpinvert Finish: rpmbuild mrtrix3-3.0.8-7.fc46.src.rpm Finish: build phase for mrtrix3-3.0.8-7.fc46.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1790965939.589153/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mrtrix3-3.0.8-7.fc46.src.rpm) Config(child) 87 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mrtrix3-debugsource", "epoch": null, "version": "3.0.8", "release": "7.fc46", "arch": "x86_64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "7.fc46", "arch": "x86_64" }, { "name": "mrtrix3", "epoch": null, "version": "3.0.8", "release": "7.fc46", "arch": "src" }, { "name": "mrtrix3-debuginfo", "epoch": null, "version": "3.0.8", "release": "7.fc46", "arch": "x86_64" } ] } RPMResults finished