%global debug_package %{nil}

Name:           babelbrain
Version:        0.8.1
Release:        5%{?dist}
Summary:        GUI for modeling transcranial ultrasound neuromodulation

License:        BSD-3-Clause
URL:            https://github.com/ProteusMRIgHIFU/BabelBrain
Source0:        https://github.com/ProteusMRIgHIFU/BabelBrain/archive/main.tar.gz#/BabelBrain-main.tar.gz

BuildRequires:  python3-devel
BuildRequires:  python3-hatchling
BuildRequires:  python3-pip
BuildRequires:  chrpath
BuildRequires:  InsightToolkit5-devel
# Add runtime deps here if needed for tests or byte-compilation checks
# BuildRequires:  python3-babelviscofdtd

Requires:       python3-babelviscofdtd
Requires:       python3-pyside6
Requires:       python3-h5py
Requires:       python3-hdf5plugin
Requires:       python3-pydicom
Requires:       python3-nibabel
Requires:       python3-pyvista
Requires:       python3-vtk
Requires:       python3-numba
Requires:       python3-numpy
Requires:       python3-scipy
Requires:       python3-matplotlib
Requires:       python3-pandas
Requires:       python3-scikit-image
Requires:       python3-pyopencl
Requires:       python3-pymupdf
# Requires:       python3-pymeshfix # Might not be in Fedora
Requires:       python3-trimesh
# Requires:       python3-manifold3d # Might not be in Fedora
Requires:       python3-numpy-stl
# Requires:       python3-pwlf # Might not be in Fedora
Requires:       python3-superqt
Requires:       InsightToolkit5
Requires:       elastix
# Requires:       python3-histoprint # Might not be in Fedora
# Requires:       python3-linetimer # Might not be in Fedora
Requires:       python3-xmltodict
Requires:       python3-openpyxl
Requires:       python3-et_xmlfile
Requires:       python3-networkx
Requires:       python3-scooby
Requires:       python3-platformdirs
Requires:       python3-packaging
Requires:       python3-click
Requires:       python3-requests
Requires:       python3-pillow
Requires:       python3-pywavelets

%description
Plymouth's TUS Planning Toolbox (BabelBrain).
BabelBrain is a graphical user interface aimed to simplify the planning of
Transcranial Focused Ultrasound (TUS) procedures.

%prep
%autosetup -n BabelBrain-main

# Fix version in pyproject.toml to match spec version
sed -i 's/version = "0.1.0"/version = "%{version}"/' pyproject.toml

%build
%pyproject_wheel

%install
%pyproject_install

# Remove bundled elastix binaries
rm -rf %{buildroot}%{python3_sitelib}/BabelBrain/ExternalBin/elastix

# Fix script permissions
chmod +x %{buildroot}%{python3_sitelib}/BabelBrain/CreateVoxelMask.py
chmod +x %{buildroot}%{python3_sitelib}/BabelBrain/ExternalBin/*/run_linux.sh

# Remove Mac/Windows specific scripts to clean up package
rm -f %{buildroot}%{python3_sitelib}/BabelBrain/ExternalBin/*/run_mac.sh
rm -f %{buildroot}%{python3_sitelib}/BabelBrain/ExternalBin/*/run_mac_transformix.sh

%files
%license LICENSE
%doc README.md
%{_bindir}/babelbrain
%{python3_sitelib}/BabelBrain
%{python3_sitelib}/babelbrain-%{version}.dist-info

%changelog
* Wed Feb 11 2026 Morgan Hough <morgan.hough@gmail.com> - 0.8.1-5
- Use system InsightToolkit5 and elastix packages directly.

* Wed Feb 11 2026 Morgan Hough <morgan.hough@gmail.com> - 0.8.1-4
- Switch to system elastix and InsightToolkit

* Sun Feb 01 2026 Morgan Hough <morgan.hough@gmail.com> - 0.8.1-3
- Fix package summary length and spelling issues

* Sun Feb 01 2026 Morgan Hough <morgan.hough@gmail.com> - 0.8.1-2
- Fix script permissions and clean up non-Linux scripts
- Fix RPATHs for bundled elastix binaries
- Disable debuginfo generation for bundled binaries

* Sun Feb 01 2026 Morgan Hough <morgan.hough@gmail.com> - 0.8.1-1
- Initial package