#####################################################################################
#####################################################################################
set(THIS_TEST_NAME ANTS_MSQ)
set(OUTPUT_PREFIX ${CMAKE_BINARY_DIR}/TEST_${THIS_TEST_NAME} )
set(WARP ${OUTPUT_PREFIX}Warp.nii.gz ${OUTPUT_PREFIX}Affine.txt )
set(INVERSEWARP -i ${OUTPUT_PREFIX}Affine.txt ${OUTPUT_PREFIX}InverseWarp.nii.gz )
set(WARP_IMAGE ${CMAKE_BINARY_DIR}/${THIS_TEST_NAME}_warped.nii.gz)
set(INVERSEWARP_IMAGE ${CMAKE_BINARY_DIR}/${THIS_TEST_NAME}_inversewarped.nii.gz)


add_test(NAME ${THIS_TEST_NAME} COMMAND ANTS 2
 -m MSQ[${R16_IMAGE},${R64_IMAGE},1,0] -r Gauss[3,0]
 -t SyN[0.25] -i 50x50x30 -o ${OUTPUT_PREFIX}.nii.gz
 )

add_test(NAME ${THIS_TEST_NAME}_WARP COMMAND WarpImageMultiTransform 2
 ${R64_IMAGE} ${WARP_IMAGE} ${WARP} -R ${R16_IMAGE} )
set_property(TEST ${THIS_TEST_NAME}_WARP APPEND PROPERTY DEPENDS ${THIS_TEST_NAME})

add_test(NAME ${THIS_TEST_NAME}_JPG COMMAND ConvertToJpg ${WARP_IMAGE} ${THIS_TEST_NAME}.jpg)
set_property(TEST ${THIS_TEST_NAME}_JPG APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)

# add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_0 COMMAND MeasureImageSimilarity 2 0
#  ${R16_IMAGE} ${WARP_IMAGE}
#  ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
#  14.3426 0.2)
# set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_0 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
#
# add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_1 COMMAND MeasureImageSimilarity 2 1
#  ${R16_IMAGE} ${WARP_IMAGE} ${OUTPUT_PREFIX}log.txt
#  ${OUTPUT_PREFIX}metric.nii.gz
#  0.997077 0.05)
# set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_1 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)
#
# add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_2 COMMAND MeasureImageSimilarity 2 2
#  ${R16_IMAGE} ${WARP_IMAGE} ${OUTPUT_PREFIX}log.txt
#  ${OUTPUT_PREFIX}metric.nii.gz
#  -1.18658 0.05)
# set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_2 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_WARP)

add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP COMMAND WarpImageMultiTransform 2
 ${R16_IMAGE} ${INVERSEWARP_IMAGE} ${INVERSEWARP} -R ${R16_IMAGE}
 )
set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP APPEND PROPERTY DEPENDS ${THIS_TEST_NAME})

# add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP_METRIC_0 COMMAND MeasureImageSimilarity 2 0 ${R64_IMAGE}
#  ${INVERSEWARP_IMAGE} ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
#  50.4483 0.05)
# set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP_METRIC_0 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_INVERSEWARP)
#
# add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP_METRIC_1 COMMAND MeasureImageSimilarity 2 1 ${R64_IMAGE}
#  ${INVERSEWARP_IMAGE} ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
#  1.0 0.05)
# set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP_METRIC_1 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_INVERSEWARP)
#
# add_test(NAME ${THIS_TEST_NAME}_INVERSEWARP_METRIC_2 COMMAND MeasureImageSimilarity 2 2 ${R64_IMAGE}
#  ${INVERSEWARP_IMAGE} ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
#  0.379897 0.05)
# set_property(TEST ${THIS_TEST_NAME}_INVERSEWARP_METRIC_2 APPEND PROPERTY DEPENDS ${THIS_TEST_NAME}_INVERSEWARP)
