/* Copyright (c) 2008-2025 the MRtrix3 contributors.
 *
 * This Source Code Form is subject to the terms of the Mozilla Public
 * License, v. 2.0. If a copy of the MPL was not distributed with this
 * file, You can obtain one at http://mozilla.org/MPL/2.0/.
 *
 * Covered Software is provided under this License on an "as is"
 * basis, without warranty of any kind, either expressed, implied, or
 * statutory, including, without limitation, warranties that the
 * Covered Software is free of defects, merchantable, fit for a
 * particular purpose or non-infringing.
 * See the Mozilla Public License v. 2.0 for more details.
 *
 * For more details, see http://www.mrtrix.org/.
 */

#include "surface/scalar.h"

#include "math/math.h"

#include "surface/freesurfer.h"


namespace MR
{
  namespace Surface
  {



    Scalar::Scalar (const std::string& path, const Mesh& mesh)
    {
      DEBUG ("Attempting to load surface scalar file \"" + path + "\"...");
      try {
        load_vector (path);
      } catch (Exception& e) {
        DEBUG (e[0]);
        try {
          load_fs_w (path, mesh);
        } catch (Exception& e) {
          DEBUG (e[0]);
          try {
            load_fs_curv (path, mesh);
          } catch (Exception& e) {
            DEBUG (e[0]);
            throw Exception ("Input surface scalar file \"" + path + "\" not in supported format");
          }
        }
      }
      if (size_t(size()) != mesh.num_vertices())
        throw Exception ("Input surface scalar file \"" + path + "\" has incorrect number of vertices (" + str(size()) + ", mesh has " + str (mesh.num_vertices()) + ")");
      name = Path::basename (path);
    }



    void Scalar::save (const std::string& path) const
    {
      save_vector (*this, path);
    }



    void Scalar::load_fs_w (const std::string& path, const Mesh& mesh)
    {
      std::ifstream in (path, std::ios_base::in | std::ios_base::binary);
      if (!in)
        throw Exception ("Error opening surface scalar file \"" + path + "\"");

      FreeSurfer::get_BE<int16_t> (in); // 'latency'
      const int32_t num_entries = FreeSurfer::get_int24_BE (in);
      Base::operator= (Base::Zero (num_entries));
      for (int32_t i = 0; i != num_entries; ++i) {
        const int32_t index = FreeSurfer::get_int24_BE (in);
        const float value = FreeSurfer::get_BE<float> (in);
        if (size_t(index) >= mesh.num_vertices())
          throw Exception ("Error opening file \"" + path + "\" as FreeSurfer w-file: invalid vertex index (" + str(index) + ", mesh has " + str(mesh.num_vertices()) + ")");
        if (!in.good())
          throw Exception ("Error opening file \"" + path + "\" as FreeSurfer w-file: truncated file");
        (*this)[index] = value;
      }
    }



    void Scalar::load_fs_curv (const std::string& path, const Mesh& mesh)
    {
      std::ifstream in (path, std::ios_base::in | std::ios_base::binary);
      if (!in)
        throw Exception ("Error opening surface scalar file \"" + path + "\"");

      const int32_t magic_number = FreeSurfer::get_int24_BE (in);
      if (magic_number == FreeSurfer::new_curv_file_magic_number) {

        const int32_t num_vertices = FreeSurfer::get_BE<int32_t> (in);
        if (size_t(num_vertices) != mesh.num_vertices())
          throw Exception ("Error opening file \"" + path + "\" as Freesurfer curv file: Incorrect number of vertices (" + str(num_vertices) + ", mesh has " + str(mesh.num_vertices()) + ")");

        const int32_t num_faces = FreeSurfer::get_BE<int32_t> (in);
        if (size_t(num_faces) != mesh.num_polygons())
          throw Exception ("Error opening file \"" + path + "\" as Freesurfer curv file: Incorrect number of polygons (" + str(num_faces) + ", mesh has " + str(mesh.num_polygons()) + ")");

        const int32_t vals_per_vertex = FreeSurfer::get_BE<int32_t> (in);
        if (vals_per_vertex != 1)
          throw Exception ("Error opening file \"" + path + "\" as Freesurfer curv file: Only support 1 value per vertex");

        (*this).resize (num_vertices);
        for (int32_t i = 0; i != num_vertices; ++i)
          (*this)[i] = FreeSurfer::get_BE<float> (in);

      } else {

        const int32_t num_vertices = magic_number;
        if (size_t(num_vertices) != mesh.num_vertices())
          throw Exception ("Error opening file \"" + path + "\" as Freesurfer curv file: Incorrect number of vertices (" + str(num_vertices) + ", mesh has " + str(mesh.num_vertices()) + ")");

        const int32_t num_faces = FreeSurfer::get_int24_BE (in);
        if (size_t(num_faces) != mesh.num_polygons())
          throw Exception ("Error opening file \"" + path + "\" as Freesurfer curv file: Incorrect number of polygons (" + str(num_faces) + ", mesh has " + str(mesh.num_polygons()) + ")");

        (*this).resize (mesh.num_vertices());
        for (int32_t i = 0; i != num_vertices; ++i)
          (*this)[i] = 0.01 * FreeSurfer::get_BE<int16_t> (in);

      }

      if (!in.good())
        throw Exception ("Error opening file \"" + path + "\" as Freesurfer curv file: Truncated file");
    }



  }
}


