# command line: plastimatch register "./sample/command_file_example.txt"

[GLOBAL]
fixed=./sample/CT_fixed.nrrd
moving=./sample/MR_moving.nrrd
img_out=./sample/MR_deformed.nrrd
xform_out=./sample/xform_deform.txt

[STAGE]
xform=rigid
optim=versor
impl=itk
threading=openmp
max_its=70
img_out=./sample/output_rigid_stage0.mha

[STAGE]
xform=bspline
impl=plastimatch
threading=openmp
regularization_lambda=1e-005
metric=mi
max_its=50
grid_spac=30 30 30
res=2 2 1
img_out=./sample/output_deform_stage2.mha
