</pre><hr>Post-stats<br><pre>

/home/paulmc/fsl/fsl-latest//bin/fslmaths stats/zstat1 -mas mask thresh_zstat1

echo 19328 > thresh_zstat1.vol
zstat1: DLH=1.72682 VOLUME=19328 RESELS=2.67917

/home/paulmc/fsl/fsl-latest//bin/fslmaths stats/zstat2 -mas mask thresh_zstat2

echo 19328 > thresh_zstat2.vol
zstat2: DLH=1.72682 VOLUME=19328 RESELS=2.67917

/home/paulmc/fsl/fsl-latest//bin/fslmaths stats/zfstat1 -mas mask thresh_zfstat1

echo 19328 > thresh_zfstat1.vol
zfstat1: DLH=1.72682 VOLUME=19328 RESELS=2.67917

/home/paulmc/fsl/fsl-latest//bin/fsl-cluster -i thresh_zstat1 -t 2.3 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26  --olmax=lmax_zstat1.txt --scalarname=Z -p 0.01 -d 1.72682 --volume=19328 -c stats/cope1 > cluster_zstat1.txt

/home/paulmc/fsl/fsl-latest//bin/cluster2html . cluster_zstat1 

/home/paulmc/fsl/fsl-latest//bin/fsl-cluster -i thresh_zstat2 -t 2.3 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26  --olmax=lmax_zstat2.txt --scalarname=Z -p 0.01 -d 1.72682 --volume=19328 -c stats/cope2 > cluster_zstat2.txt

/home/paulmc/fsl/fsl-latest//bin/cluster2html . cluster_zstat2 

/home/paulmc/fsl/fsl-latest//bin/fsl-cluster -i thresh_zfstat1 -t 2.3 --othresh=thresh_zfstat1 -o cluster_mask_zfstat1 --connectivity=26  --olmax=lmax_zfstat1.txt --scalarname=Z -p 0.01 -d 1.72682 --volume=19328 > cluster_zfstat1.txt

/home/paulmc/fsl/fsl-latest//bin/cluster2html . cluster_zfstat1 

/home/paulmc/fsl/fsl-latest//bin/fsl-cluster -i thresh_zstat1 -c stats/cope1 -t 2.3  -p 0.01 -d 1.72682 --volume=19328 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zstat1_std.txt --scalarname=Z  > cluster_zstat1_std.txt

/home/paulmc/fsl/fsl-latest//bin/cluster2html . cluster_zstat1 -std

/home/paulmc/fsl/fsl-latest//bin/fsl-cluster -i thresh_zstat2 -c stats/cope2 -t 2.3  -p 0.01 -d 1.72682 --volume=19328 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zstat2_std.txt --scalarname=Z  > cluster_zstat2_std.txt

/home/paulmc/fsl/fsl-latest//bin/cluster2html . cluster_zstat2 -std

/home/paulmc/fsl/fsl-latest//bin/fsl-cluster -i thresh_zfstat1  -t 2.3  -p 0.01 -d 1.72682 --volume=19328 -x reg/example_func2standard.mat --stdvol=reg/standard --mm --connectivity=26 --olmax=lmax_zfstat1_std.txt --scalarname=Z  > cluster_zfstat1_std.txt

/home/paulmc/fsl/fsl-latest//bin/cluster2html . cluster_zfstat1 -std

/home/paulmc/fsl/fsl-latest//bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
2.302927 16.298498 

/home/paulmc/fsl/fsl-latest//bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
2.300793 17.601126 

/home/paulmc/fsl/fsl-latest//bin/fslstats thresh_zfstat1 -l 0.0001 -R 2>/dev/null
2.300243 17.410551 
Rendering using zmin=2.300243 zmax=17.601126

/home/paulmc/fsl/fsl-latest//bin/overlay 1 0 example_func -a thresh_zstat1 2.300243 17.601126 rendered_thresh_zstat1

/home/paulmc/fsl/fsl-latest//bin/slicer rendered_thresh_zstat1 -A 750 rendered_thresh_zstat1.png

/bin/cp /home/paulmc/fsl/fsl-latest//etc/luts/ramp.gif .ramp.gif

/home/paulmc/fsl/fsl-latest//bin/overlay 1 0 example_func -a thresh_zstat2 2.300243 17.601126 rendered_thresh_zstat2

/home/paulmc/fsl/fsl-latest//bin/slicer rendered_thresh_zstat2 -A 750 rendered_thresh_zstat2.png

/home/paulmc/fsl/fsl-latest//bin/overlay 1 0 example_func -a thresh_zfstat1 2.300243 17.601126 rendered_thresh_zfstat1

/home/paulmc/fsl/fsl-latest//bin/slicer rendered_thresh_zfstat1 -A 750 rendered_thresh_zfstat1.png

mkdir -p tsplot ; /home/paulmc/fsl/fsl-latest//bin/tsplot . -f filtered_func_data -o tsplot
