#!/bin/bash -e

outdir=$1
indir=$2

data=$indir/dti/data.nii.gz
mask=$indir/dti/mask.nii.gz
bvals=$indir/dti/bvals
bvecs=$indir/dti/bvecs

dtifit -V -k $data -m $mask -r $bvecs -b $bvals -o $outdir/dti
