#!/bin/bash -e
#
# A FEEDS test which registers one image to another.

outdir=$1
indir=$2

# Apply the transform to the data
flirt -in $indir/flirt/input.nii.gz                   \
      -ref $FSLDIR/data/standard/MNI152_T1_2mm.nii.gz \
      -applyxfm                                       \
      -init $indir/flirt/xform.mat                    \
      -out $outdir/data_xformed.nii.gz
