%global pypi_name pyRadPlan

Name:           python-pyradplan
Version:        0.8.0
Release:        1%{?dist}
Summary:        Radiotherapy treatment planning: photon and ion dose calculation and optimisation

# The bundled generic machine data, the TG119 phantom and the RBE table come from matRad
# (GPL-3.0). The same copyright holder (DKFZ) distributes them in pyRadPlan under the
# repository's BSD-3-Clause licence, and no file in the sdist carries another licence.
License:        BSD-3-Clause
URL:            https://github.com/e0404/pyRadPlan
Source0:        %{pypi_source pyradplan}

BuildArch:      noarch
BuildRequires:  python3-devel
BuildRequires:  pyproject-rpm-macros
BuildRequires:  python3-pytest

%global _description %{expand:
pyRadPlan is a multi-modality radiotherapy treatment planning toolkit in
Python, a reimplementation of the MATLAB toolkit matRad (DKFZ). It provides CT
and structure-set models, beam steering geometry, pencil-beam dose engines for
photons (SVD kernel) and ions (protons, helium, carbon, oxygen; Hong model),
dose-influence matrices, fluence optimisation with clinical objectives, DVH
analysis, and Monte Carlo recalculation through TOPAS or FRED. 3D Slicer's
SlicerRT External Beam Planning module uses it as a dose engine and optimiser.

Research use only.}

%description %_description

%package -n python3-pyradplan
Summary:        %{summary}
# Monte Carlo recalculation through the TOPAS engine runs the topas executable.
Recommends:     opentopas
# The default fluence solver is IPOPT through ipyopt, which Fedora does not ship; scipy and
# ipax (both required) are the working solvers. The GUI extra needs PySide6 and pyqtgraph.
Suggests:       python3-pyside6
Suggests:       python3-pyqtgraph
%description -n python3-pyradplan %_description

%prep
%autosetup -n pyradplan-%{version}
# pydantic_ai only backs pyRadPlan.ai.agents (LLM planning helpers), which imports it on
# use; types-array-api is typing-only (imported under TYPE_CHECKING). Neither is needed to
# plan. NumPy is capped below 2.4 upstream without a stated reason; Fedora ships 2.4 and
# the test suite runs against it in %%check.
sed -i -e '/"pydantic_ai/d' -e '/"types-array-api"/d' \
       -e 's/"numpy>=2.0,<2.4"/"numpy>=2.0"/' pyproject.toml
grep -q '"numpy>=2.0"' pyproject.toml
! grep -E '"pydantic_ai|"types-array-api' pyproject.toml
# test_lazy_imports.py imports pyRadPlan.ai.agents (pydantic_ai, genai_prices) at module level
# for one parametrised case; keep the file's light-import tests and drop that case.
sed -i -e '/^import pyRadPlan\.ai\.agents$/d' \
       -e 's/\[pyRadPlan, pyRadPlan\.ai\.agents\]/[pyRadPlan]/' test/test_lazy_imports.py
! grep -n 'ai\.agents' test/test_lazy_imports.py

%generate_buildrequires
%pyproject_buildrequires

%build
%pyproject_wheel

%install
%pyproject_install
%pyproject_save_files %{pypi_name}

%check
# ai.agents needs pydantic_ai (dropped above); gui needs the Qt extra; matRad needs MATLAB
# or Octave engines; ipopt needs ipyopt. None are importable here by design.
%pyproject_check_import -e 'pyRadPlan.ai.*' -e 'pyRadPlan.gui*' -e 'pyRadPlan.matRad*' -e 'pyRadPlan.optimization.solvers._ipopt'
# Not run: ai (pydantic_ai, torch, network model downloads), gui (Qt), packaging (briefcase
# app bundles), and the MATLAB/Octave bridge tests.
%pytest -p no:cacheprovider test \
  --ignore=test/ai --ignore=test/gui --ignore=test/packaging \
  --ignore=test/test_matlabEngine.py --ignore=test/test_matrad_octave.py \
  --ignore=test/test_octaveEngine.py

%files -n python3-pyradplan -f %{pyproject_files}
%license LICENSE
%doc README.md CHANGELOG.md CITATION.cff

%changelog
* Fri Nov 06 2026 Morgan Hough <morgan.hough@gmail.com> - 0.8.0-1
- Initial package, for SlicerRT's pyRadPlan dose engine and optimiser. The LLM agent
  helpers (pydantic_ai) are not packaged; NumPy is allowed at 2.4.