/*=========================================================================
 *
 *  Copyright NumFOCUS
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         https://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkLabelImageToLabelMapFilter_h
#define itkLabelImageToLabelMapFilter_h

#include "itkImageToImageFilter.h"
#include "itkLabelMap.h"
#include "itkLabelObject.h"

namespace itk
{
/**
 * \class LabelImageToLabelMapFilter
 * \brief convert a labeled image to a label collection image
 *
 * LabelImageToLabelMapFilter converts a label image to a label collection image.
 * The labels are the same in the input and the output image.
 *
 * \author Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.
 *
 * This implementation was taken from the Insight Journal paper:
 * https://doi.org/10.54294/q6auw4
 *
 * \sa BinaryImageToLabelMapFilter, LabelMapToLabelImageFilter
 * \ingroup ImageEnhancement  MathematicalMorphologyImageFilters
 * \ingroup ITKLabelMap
 *
 * \sphinx
 * \sphinxexample{Filtering/LabelMap/ConvertImageToLabelMap,Convert itk::Image With Labels To Label Map}
 * \endsphinx
 */
template <typename TInputImage,
          typename TOutputImage = LabelMap<LabelObject<typename TInputImage::PixelType, TInputImage::ImageDimension>>>
class ITK_TEMPLATE_EXPORT LabelImageToLabelMapFilter : public ImageToImageFilter<TInputImage, TOutputImage>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LabelImageToLabelMapFilter);

  /** Standard class type aliases. */
  using Self = LabelImageToLabelMapFilter;
  using Superclass = ImageToImageFilter<TInputImage, TOutputImage>;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;

  /** Some convenient type alias. */
  using InputImageType = TInputImage;
  using OutputImageType = TOutputImage;
  using InputImagePointer = typename InputImageType::Pointer;
  using InputImageConstPointer = typename InputImageType::ConstPointer;
  using InputImageRegionType = typename InputImageType::RegionType;
  using InputImagePixelType = typename InputImageType::PixelType;
  using IndexType = typename InputImageType::IndexType;

  using OutputImagePointer = typename OutputImageType::Pointer;
  using OutputImageConstPointer = typename OutputImageType::ConstPointer;
  using OutputImageRegionType = typename OutputImageType::RegionType;
  using OutputImagePixelType = typename OutputImageType::PixelType;
  using LabelObjectType = typename OutputImageType::LabelObjectType;
  using LengthType = typename LabelObjectType::LengthType;

  /** ImageDimension constants */
  static constexpr unsigned int InputImageDimension = TInputImage::ImageDimension;
  static constexpr unsigned int OutputImageDimension = TOutputImage::ImageDimension;

  /** Standard New method. */
  itkNewMacro(Self);

  /** \see LightObject::GetNameOfClass() */
  itkOverrideGetNameOfClassMacro(LabelImageToLabelMapFilter);

  /**
   * Set/Get the value used as "background" in the output image.
   * Defaults to NumericTraits<PixelType>::NonpositiveMin().
   */
  /** @ITKStartGrouping */
  itkSetMacro(BackgroundValue, OutputImagePixelType);
  itkGetConstMacro(BackgroundValue, OutputImagePixelType);
  /** @ITKEndGrouping */
  itkConceptMacro(SameDimensionCheck, (Concept::SameDimension<InputImageDimension, OutputImageDimension>));

protected:
  LabelImageToLabelMapFilter();
  ~LabelImageToLabelMapFilter() override = default;
  void
  PrintSelf(std::ostream & os, Indent indent) const override;

  /** LabelImageToLabelMapFilter needs the entire input be
   * available. Thus, it needs to provide an implementation of
   * GenerateInputRequestedRegion(). */
  void
  GenerateInputRequestedRegion() override;

  /** LabelImageToLabelMapFilter will produce the entire output. */
  void
  EnlargeOutputRequestedRegion(DataObject * itkNotUsed(output)) override;

  void
  BeforeThreadedGenerateData() override;

  void
  ThreadedGenerateData(const OutputImageRegionType & regionForThread, ThreadIdType threadId) override;

  void
  DynamicThreadedGenerateData(const OutputImageRegionType &) override
  {
    itkExceptionStringMacro("This class requires threadId so it must use classic multi-threading model");
  }

  void
  AfterThreadedGenerateData() override;

private:
  OutputImagePixelType m_BackgroundValue{};

  typename std::vector<OutputImagePointer> m_TemporaryImages{};
}; // end of class
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkLabelImageToLabelMapFilter.hxx"
#endif

#endif
