Mock Version: 1.2.17 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/avogadro.spec'], logger=printOutput=Falsetimeout=0uid=1001gid=135chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2817/root'env={'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}user='mockbuild'shell=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/avogadro.spec'] with env {'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False sh: /usr/bin/python: No such file or directory warning: Could not canonicalize hostname: copr-builder-858048290.novalocal Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/avogadro-1.1.1-10.el7.centos.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/avogadro.spec'], logger=printOutput=Falsetimeout=0uid=1001gid=135chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2817/root'env={'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'}private_network=Trueuser='mockbuild'shell=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/avogadro.spec'] with env {'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'TERM': 'vt100', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.xgNDoN + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadro-1.1.1 + /usr/bin/bzip2 -dc /builddir/build/SOURCES/avogadro-1.1.1.tar.bz2 + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadro-1.1.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (avogadro-1.1.1-mkspecs-dir.patch):' Patch #0 (avogadro-1.1.1-mkspecs-dir.patch): + /usr/bin/patch -p1 -b --suffix .mkspecs-dir --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/avogadro-1.1.1-mkspecs-dir.patch patching file CMakeLists.txt Patch #1 (avogadro-1.1.1-no-strip.patch): + echo 'Patch #1 (avogadro-1.1.1-no-strip.patch):' + /usr/bin/cat /builddir/build/SOURCES/avogadro-1.1.1-no-strip.patch + /usr/bin/patch -p1 -b --suffix .no-strip --fuzz=0 patching file CMakeLists.txt Patch #2 (avogadro-1.1.1-pkgconfig_eigen.patch): + echo 'Patch #2 (avogadro-1.1.1-pkgconfig_eigen.patch):' + /usr/bin/patch -p1 -b --suffix .pkgconfig_eigen --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/avogadro-1.1.1-pkgconfig_eigen.patch patching file avogadro.pc.in Patch #3 (0029-Fix-compilation-on-ARM-where-qreal-can-be-defined-as.patch): + echo 'Patch #3 (0029-Fix-compilation-on-ARM-where-qreal-can-be-defined-as.patch):' + /usr/bin/patch -p1 -b --suffix .qreal --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/0029-Fix-compilation-on-ARM-where-qreal-can-be-defined-as.patch patching file libavogadro/src/extensions/qtaim/qtaimcubature.cpp Patch #10 (avogadro-cmake-3.2.patch): + echo 'Patch #10 (avogadro-cmake-3.2.patch):' + /usr/bin/patch -p1 -b --suffix .cmake_x11 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/avogadro-cmake-3.2.patch patching file CMakeLists.txt Patch #11 (avogadro-1.1.1-eigen3.patch): + echo 'Patch #11 (avogadro-1.1.1-eigen3.patch):' + /usr/bin/patch -p1 -b --suffix .eigen3 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/avogadro-1.1.1-eigen3.patch patching file CMakeLists.txt Hunk #1 succeeded at 231 (offset 1 line). patching file libavogadro/src/extensions/qtaim/CMakeLists.txt patching file libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt patching file cmake/modules/AvogadroUse.cmake + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.L3rbTs + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.1.1 + mkdir -p x86_64-redhat-linux-gnu + pushd x86_64-redhat-linux-gnu ~/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu ~/build/BUILD/avogadro-1.1.1 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro ' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DENABLE_TESTS:BOOL=ON -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_VERSIONED_PLUGIN_DIR:BOOL=OFF .. -- The C compiler identification is GNU 4.8.5 -- The CXX compiler identification is GNU 4.8.5 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- The build type is Release -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.5", minimum required is "4.6.0") -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- Found OpenGL: /usr/lib64/libGL.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.27.1") -- checking for module 'openbabel-2.0>=2.3.0' -- found openbabel-2.0, version 2.3.2 -- Found OpenBabel 2.3 or later: openbabel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.53.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib64/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python (found version "2.7.5") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 265734 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- Unit testing enabled, run make test to run them -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- Setting new boost python libraries -- Enabled python terminal -- Found Qt4: /usr/bin/qmake-qt4 (found suitable version "4.8.5", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib64/python2.7/site-packages -- Test: drawcommand -- Test: molecule -- Test: moleculefile -- Test: neighborlist -- Benchmark: molecule -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu + popd ~/build/BUILD/avogadro-1.1.1 + make -j2 -C x86_64-redhat-linux-gnu make: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -H/builddir/build/BUILD/avogadro-1.1.1 -B/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Generating moc_elementcolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/elementcolor.h [ 0%] Generating ui_bsdysettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/bsdysettingswidget.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Generating moc_bsdyengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.h Scanning dependencies of target elementcolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/elementcolor.cpp cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/elementcolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Scanning dependencies of target bsdyengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx Linking CXX static library elementcolor.a cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar cr elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Built target elementcolor make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Generating qrc_navigatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name navigatetool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/navigatetool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Generating moc_navigatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/navigatetool.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Generating ui_navigatesettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/navigatesettingswidget.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= Scanning dependencies of target navigatetool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX static library bsdyengine.a cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar cr bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Built target bsdyengine make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/DependInfo.cmake --color= Scanning dependencies of target spglib make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build.make libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/cell.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/cell.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/cell.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 0%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/debug.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/debug.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/debug.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 91 [ 1%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/hall_symbol.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/hall_symbol.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/hall_symbol.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 70 [ 2%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 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-I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/lattice.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/lattice.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 2%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/mathfunc.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc 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-DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/refinement.c.o -c 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-I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/symmetry.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/symmetry.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building C object libavogadro/src/extensions/crystallography/spglib/CMakeFiles/spglib.dir/symmetry_kpoint.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -w -o CMakeFiles/spglib.dir/symmetry_kpoint.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/spglib/symmetry_kpoint.c Linking C static library libspglib.a cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -P CMakeFiles/spglib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/spglib && /usr/bin/cmake -E cmake_link_script CMakeFiles/spglib.dir/link.txt --verbose=1 /usr/bin/ar cr libspglib.a CMakeFiles/spglib.dir/cell.c.o CMakeFiles/spglib.dir/debug.c.o CMakeFiles/spglib.dir/hall_symbol.c.o CMakeFiles/spglib.dir/lattice.c.o CMakeFiles/spglib.dir/mathfunc.c.o CMakeFiles/spglib.dir/pointgroup.c.o CMakeFiles/spglib.dir/primitive.c.o CMakeFiles/spglib.dir/refinement.c.o CMakeFiles/spglib.dir/spacegroup.c.o CMakeFiles/spglib.dir/spg_database.c.o CMakeFiles/spglib.dir/spglib.c.o CMakeFiles/spglib.dir/symmetry.c.o CMakeFiles/spglib.dir/symmetry_kpoint.c.o /usr/bin/ranlib libspglib.a make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 91 92 [ 3%] Built target spglib make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Generating moc_slaterset.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/usr/include -I/usr/include/eigen3 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/slaterset.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Generating moc_basisset.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/usr/include -I/usr/include/eigen3 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Generating moc_gaussianset.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/usr/include -I/usr/include/eigen3 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= Scanning dependencies of target OpenQube make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:20, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx Linking CXX static library navigatetool.a cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar cr navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 70 [ 3%] Built target navigatetool make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen 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-DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c 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-isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 98 [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp /usr/bin/cmake -E cmake_progress_report 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-I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/cube.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:20, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX static library libtubegen.a cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 /usr/bin/ar cr libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 98 [ 4%] Built target tubegen make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target drawcommandtestmoc make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtestmoc.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Generating moc_drawcommandtest.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/moc_drawcommandtest.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/drawcommandtest.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Built target drawcommandtestmoc make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculebenchmoc make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculebenchmoc.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Generating moc_moleculebench.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/moc_moleculebench.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculebench.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 4%] Built target moleculebenchmoc make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculefiletestmoc make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletestmoc.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 69 [ 5%] Generating moc_moleculetest.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/moc_moleculetest.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculetest.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 5%] Generating moc_moleculefiletest.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/moc_moleculefiletest.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculefiletest.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 69 [ 5%] Built target moleculefiletestmoc make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculetestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target moleculetestmoc make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build.make libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for `libavogadro/tests/CMakeFiles/moleculetestmoc.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 5%] Built target moleculetestmoc make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/DependInfo.cmake --color= Scanning dependencies of target neighborlisttestmoc make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttestmoc.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 5%] Generating moc_neighborlisttest.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/moc_neighborlisttest.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/neighborlisttest.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 5%] Built target neighborlisttestmoc make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 15 [ 6%] Generating qrc_pythontool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/rcc -name pythontool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/qrc_pythontool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pythontool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 6%] Generating moc_animation.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/animation.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 6%] Generating moc_atom.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/atom.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 6%] Generating moc_bond.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_bond.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/bond.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 6%] Generating moc_color.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_color.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/color.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 6 [ 7%] Generating moc_colorbutton.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_colorbutton.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colorbutton.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_cube.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_cube.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cube.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_dockextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_dockextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/dockextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_dockwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_dockwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/dockwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_elementdetail_p.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/elementdetail_p.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_elementtranslator.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_elementtranslator.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/elementtranslator.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_engine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engine.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 7%] Generating moc_extension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_extension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 7 [ 8%] Generating moc_fragment.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/fragment.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_glwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_mesh.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/mesh.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_meshgenerator.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/meshgenerator.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_molecule.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/molecule.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_moleculefile.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/moleculefile.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_periodictablescene_p.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/periodictablescene_p.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_periodictableview.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_periodictableview.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/periodictableview.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 8%] Generating moc_plotwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_plotwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/plotwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 8 [ 9%] Generating moc_plugin.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_plugin.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/plugin.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_pluginmanager.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pluginmanager.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pluginmanager.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_primitive.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitive.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_protein.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_protein.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/protein.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_readfilethread_p.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/readfilethread_p.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_residue.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/residue.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_textmatrixeditor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/textmatrixeditor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 9%] Generating moc_tool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_tool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tool.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 9 [ 10%] Generating moc_toolgroup.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_toolgroup.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/toolgroup.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 10%] Generating moc_zmatrix.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_zmatrix.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/zmatrix.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 10%] Generating moc_pythonengine_p.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pythonengine_p.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 10%] Generating moc_pythonerror.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonerror.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pythonerror.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 10%] Generating moc_pythonextension_p.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pythonextension_p.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 10%] Generating moc_pythontool_p.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythontool_p.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pythontool_p.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 10%] Generating libavogadro_eu.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/eu.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 1 [ 11%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessus.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_eu.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 11%] Generating libavogadro_hu.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/hu.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hu.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 11%] Generating libavogadro_he.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/he.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_he.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_he.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_he.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 10 [ 12%] Generating libavogadro_de.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/de.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_de.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_de.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_ru.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ru.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ru.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_ja.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ja.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:18: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ja.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_el.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/el.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_el.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_el.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_el.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_hi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/hi.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_hi.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_ca@valencia.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ca@valencia.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molden.h:20, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_da.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/da.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_da.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_da.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_da.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Generating libavogadro_en_AU.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/en_AU.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 12%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.cpp cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_AU.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 11 [ 13%] Generating libavogadro_kn.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/kn.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_kn.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_it.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/it.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_it.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_it.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_it.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_en_GB.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/en_GB.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.ts /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_GB.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_sr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/sr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_pt.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/pt.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/slaterset.h:20, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:17: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_bs.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/bs.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bs.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_bg.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/bg.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bg.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bg.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_bg.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_cs.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/cs.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_cs.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 13%] Generating libavogadro_id.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/id.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_id.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_id.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 12 [ 14%] Generating libavogadro_es.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/es.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_es.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_es.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_gl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/gl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_gl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/zh_CN.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_tr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/tr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_tr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ms.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ms.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_ko.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ko.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ko.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_vi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/vi.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_vi.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 14%] Generating libavogadro_pl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/pl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 13 [ 15%] Generating libavogadro_ug.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ug.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ug.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Generating libavogadro_sv.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/sv.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sv.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Generating libavogadro_pt_BR.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/pt_BR.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Generating libavogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/oc.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_oc.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Generating libavogadro_fr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/fr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Generating libavogadro_nl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/nl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:21, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 15%] Generating libavogadro_ar.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ar.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ar.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ar.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 2 [ 16%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:20, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ar.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 16%] Generating libavogadro_nb.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/nb.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_nb.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 16%] Generating libavogadro_sl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/sl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... Linking CXX shared library ../../../../../lib64/libavogadro_OpenQube.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib64/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -L/usr/usr/lib64 -lQtCore -Wl,-rpath,/usr/usr/lib64: cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../../lib64/libavogadro_OpenQube.so.0 ../../../../../lib64/libavogadro_OpenQube.so make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 1 2 [ 16%] Built target OpenQube /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 14 [ 17%] Generating libavogadro_ca.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/ca.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_zh_TW.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/zh_TW.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_ca.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_sq.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/sq.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_sk.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/sk.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sq.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_et.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/et.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_et.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_sk.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_en_CA.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/en_CA.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_et.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/uk.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_en_CA.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Generating libavogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/libavogadro/fi.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/libavogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/animation.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/animation.cpp Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/atom.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/animation.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/animation.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/atom.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/bond.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/bond.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/bond.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/bond.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/camera.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/camera.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/camera.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/color.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/color.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colorbutton.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cube.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cube.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cube.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cylinder_p.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 16 [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/dockextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cylinder_p.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/cylinder_p.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/dockwidget.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 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-Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/elementitem_p.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/elementtranslator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/engine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/extension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extension.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/fragment.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/fragment.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/fragment.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glhit.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 17 [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/global.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/global.cpp In file included from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/global.cpp:29:0: /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/config.h:41:0: warning: "EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API" redefined [enabled by default] #define EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API ^ :0:0: note: this is the location of the previous definition /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glpainter_p.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glpainter_p.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glpainter_p.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glwidget.cpp In file included from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glwidget.cpp:30:0: /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/config.h:41:0: warning: "EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API" redefined [enabled by default] #define EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API ^ :0:0: note: this is the location of the previous definition In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/camera.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glwidget.cpp:32: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glpainter_p.cpp: In member function 'virtual void Avogadro::GLPainter::drawTriangle(const Vector3d&, const Vector3d&, const Vector3d&)': /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/glpainter_p.cpp:573:27: warning: variable 'planeNormalVector' set but not used [-Wunused-but-set-variable] const Eigen::Vector3d planeNormalVector = d->widget->normalVector(); ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/idlist.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/idlist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/idlist.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/mesh.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/mesh.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/mesh.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/meshgenerator.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/meshgenerator.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/molecule.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/molecule.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/moleculefile.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/moleculefile.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/moleculefile.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 18 [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/navigate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/navigate.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/navigate.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/neighborlist.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/neighborlist.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/painter.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/painter.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/painter.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/painter.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/periodictablescene_p.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/periodictableview.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG 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/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/plotobject.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/plotpoint.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/plotwidget.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 19 [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/plugin.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pluginmanager.cpp In file included from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pluginmanager.cpp:28:0: /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/config.h:41:0: warning: "EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API" redefined [enabled by default] #define EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API ^ :0:0: note: this is the location of the previous definition /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitive.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitive.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pythonengine_p.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/pluginmanager.cpp:32: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitivelist.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/primitivelist.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/protein.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/protein.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/protein.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/moleculefile.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/readfilethread_p.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/residue.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/residue.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/residue.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/sphere_p.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 20 [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/sphere_p.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/sphere_p.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/textmatrixeditor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/textmatrixeditor.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/tool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tool.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG 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/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/animation.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_animation.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_atom.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_dockextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden 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-DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_elementtranslator.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_engine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_extension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_fragment.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_glwidget.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 23 [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/mesh.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_mesh.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_molecule.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/moleculefile.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_periodictableview.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_plotwidget.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 25%] 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CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_plugin.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 24 [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pluginmanager.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_primitive.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_protein.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/residue.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_residue.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_tool.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_toolgroup.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 26%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_zmatrix.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 25 [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/moc_pythontool_p.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 27%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/qrc_pythontool.cxx Linking CXX shared library ../../lib64/libavogadro.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,libavogadro.so.1 -o ../../lib64/libavogadro.so.1.1.1 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -L/usr/usr/lib64 -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -lpython2.7 -lboost_python-mt engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64: cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib64/libavogadro.so.1.1.1 ../../lib64/libavogadro.so.1 ../../lib64/libavogadro.so make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 [ 27%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 27%] [ 27%] Generating ui_cartoonsettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonsettingswidget.ui Generating ui_axessettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/axessettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 27%] [ 27%] Generating moc_cartoonengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonengine.h Generating moc_axesengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/axesengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target cartoonengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build Scanning dependencies of target axesengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build [ 27%] make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 40 Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonengine.cpp [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daxesengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/axesengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/axesengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daxesengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.h:42, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:36: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/axesengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,axesengine.so -o ../../../lib64/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 40 [ 28%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 28%] Generating ui_dipolesettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/dipolesettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 49 [ 29%] Generating moc_dipoleengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/dipoleengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddipoleengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/dipoleengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/dipoleengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.h:42, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:36: /usr/include/eigen3/Eigen/src/Core/Functors.h: In member function 'std::vector > Avogadro::CartoonMeshGenerator::smoothList(const std::vector >&)': /usr/include/eigen3/Eigen/src/Core/Functors.h:26:101: warning: '*((void*)& lasti +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { return a + b; } ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:312:23: note: '*((void*)& lasti +8)' was declared here Eigen::Vector3f lasti; ^ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.h:42, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:36: /usr/include/eigen3/Eigen/src/Core/Functors.h:26:101: warning: '*((void*)& lasti +4)' may be used uninitialized in this function [-Wmaybe-uninitialized] EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { return a + b; } ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:312:23: note: '*((void*)& lasti +4)' was declared here Eigen::Vector3f lasti; ^ In file included from /usr/include/eigen3/Eigen/Core:276:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.h:42, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:36: /usr/include/eigen3/Eigen/src/Core/Functors.h:26:101: warning: 'lasti' may be used uninitialized in this function [-Wmaybe-uninitialized] EIGEN_STRONG_INLINE const Scalar operator() (const Scalar& a, const Scalar& b) const { return a + b; } ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/cartoonmeshgenerator.cpp:312:23: note: 'lasti' was declared here Eigen::Vector3f lasti; ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddipoleengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartoonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/dipoleengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,dipoleengine.so -o ../../../lib64/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 49 [ 29%] Built target dipoleengine make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Generating moc_forceengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/forceengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforceengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/forceengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/forceengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/cartoonengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,cartoonengine.so -o ../../../lib64/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Built target cartoonengine make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Generating ui_hbondsettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/hbondsettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Generating moc_hbondengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/hbondengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= Scanning dependencies of target hbondengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhbondengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/hbondengine.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 52 [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforceengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/hbondengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/forceengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,forceengine.so -o ../../../lib64/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 52 [ 30%] Built target forceengine make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 30%] Generating ui_labelsettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/labelsettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 30%] Generating moc_labelengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/labelengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target labelengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dlabelengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/labelengine.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/labelengine.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhbondengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/hbondengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,hbondengine.so -o ../../../lib64/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 30%] Built target hbondengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 74 [ 31%] Generating moc_polygonengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/polygonengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpolygonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/polygonengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 67 [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dlabelengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpolygonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/labelengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,labelengine.so -o ../../../lib64/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 67 [ 32%] Built target labelengine make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Generating ui_qtaimsettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/qtaimsettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Generating moc_qtaimengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/qtaimengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= Linking CXX shared module ../../../lib64/polygonengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 Scanning dependencies of target qtaimengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,polygonengine.so -o ../../../lib64/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/qtaimengine.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 74 [ 32%] Built target polygonengine make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Generating ui_ribbonsettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ribbonsettingswidget.ui In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/qtaimengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Generating moc_ribbonengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ribbonengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target ribbonengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dribbonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ribbonengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ribbonengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dribbonengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/ribbonengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,ribbonengine.so -o ../../../lib64/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Built target ribbonengine make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 32%] Generating ui_ringsettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ringsettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 84 [ 33%] Generating moc_ringengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ringengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dringengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ringengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/ringengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/qtaimengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,qtaimengine.so -o ../../../lib64/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 33%] Built target qtaimengine make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 33%] Generating moc_simplewireengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/simplewireengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 86 [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/simplewireengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dringengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/simplewireengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,simplewireengine.so -o ../../../lib64/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 86 [ 34%] Built target simplewireengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Generating ui_spheresettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/spheresettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Generating moc_sphereengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/sphereengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsphereengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/sphereengine.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/ringengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,ringengine.so -o ../../../lib64/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 84 [ 34%] Built target ringengine make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Generating ui_sticksettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/sticksettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 34%] Generating moc_stickengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/stickengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 93 [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dstickengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/stickengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/stickengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsphereengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dstickengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/sphereengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,sphereengine.so -o ../../../lib64/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Built target sphereengine make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Generating ui_surfacesettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/surfacesettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Generating moc_surfaceengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/surfaceengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/surfaceengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/surfaceengine.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/stickengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,stickengine.so -o ../../../lib64/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 93 [ 35%] Built target stickengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Generating ui_wiresettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/wiresettingswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Generating moc_wireengine.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/wireengine.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dwireengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/wireengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/engines/wireengine.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/surfaceengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,surfaceengine.so -o ../../../lib64/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Generating qrc_aligntool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name aligntool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Generating moc_aligntool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 100 [ 36%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dwireengine_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/wireengine.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,wireengine.so -o ../../../lib64/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/usr/usr/lib64 -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/.. ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/engines/..:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 100 [ 36%] Built target wireengine make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Generating qrc_autoopttool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name autoopttool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autoopttool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Generating moc_autoopttool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autoopttool.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autoopttool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:260:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h: In member function 'void Avogadro::AlignTool::align()': /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:114:37: warning: '*((void*)& axis +16)' may be used uninitialized in this function [-Wmaybe-uninitialized] const Packet& b) { return a*b; } ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:256:16: note: '*((void*)& axis +16)' was declared here Vector3d axis; ^ In file included from /usr/include/eigen3/Eigen/Core:260:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:114:37: warning: '*((void*)& axis +8)' may be used uninitialized in this function [-Wmaybe-uninitialized] const Packet& b) { return a*b; } ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:256:16: note: '*((void*)& axis +8)' was declared here Vector3d axis; ^ In file included from /usr/include/eigen3/Eigen/Core:260:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:27: /usr/include/eigen3/Eigen/src/Core/GenericPacketMath.h:114:37: warning: 'axis' may be used uninitialized in this function [-Wmaybe-uninitialized] const Packet& b) { return a*b; } ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/aligntool.cpp:256:16: note: 'axis' was declared here Vector3d axis; ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Daligntool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx Linking CXX shared module ../../../lib64/aligntool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,aligntool.so -o ../../../lib64/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Built target aligntool make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 36%] Generating qrc_autorotatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name autorotatetool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 5 [ 37%] Generating moc_autorotatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautorotatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx Linking CXX shared module ../../../lib64/autorotatetool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,autorotatetool.so -o ../../../lib64/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 5 [ 37%] Built target autorotatetool make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Generating qrc_bondcentrictool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name bondcentrictool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Generating moc_bondcentrictool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Generating moc_skeletontree.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target bondcentrictool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.h:36, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dautoopttool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx Linking CXX shared module ../../../lib64/autoopttool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,autoopttool.so -o ../../../lib64/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Built target autoopttool make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Generating qrc_clickmeasuretool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name clickmeasuretool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Generating moc_clickmeasuretool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/clickmeasuretool.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.cpp: In member function 'virtual QUndoCommand* Avogadro::BondCentricTool::mouseMoveEvent(Avogadro::GLWidget*, QMouseEvent*)': /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.cpp:579:20: warning: variable 'clicked' set but not used [-Wunused-but-set-variable] Vector3d clicked = *m_clickedAtom->pos(); ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/bondcentrictool.cpp:674:20: warning: variable 'clicked' set but not used [-Wunused-but-set-variable] Vector3d clicked = *m_clickedAtom->pos(); ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx Linking CXX shared module ../../../lib64/clickmeasuretool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,clickmeasuretool.so -o ../../../lib64/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Built target clickmeasuretool make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 37%] Generating qrc_drawtool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name drawtool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawtool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 50 [ 38%] Generating moc_drawtool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawtool.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawcommand.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawtool.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.h:36, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawcommand.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:36, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 41 [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:36, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddrawtool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx Linking CXX shared module ../../../lib64/drawtool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,drawtool.so -o ../../../lib64/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 50 [ 39%] Built target drawtool make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Generating qrc_manipulatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name manipulatetool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Linking CXX shared module ../../../lib64/bondcentrictool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 Generating moc_manipulatetool.cxx /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,bondcentrictool.so -o ../../../lib64/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Generating ui_manipulatesettingswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/manipulatesettingswidget.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 41 [ 39%] Built target bondcentrictool make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Generating qrc_selectrotatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/rcc -name selectrotatetool -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 39%] Generating moc_selectrotatetool.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.h In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 85 [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/selectrotatetool.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/eyecandy.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 40%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx Linking CXX shared module ../../../lib64/selectrotatetool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,selectrotatetool.so -o ../../../lib64/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 85 [ 40%] Built target selectrotatetool make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 40%] Generating qrc_animationextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/rcc -name animationextension -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationextension.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 40%] Generating moc_animationextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 40%] Generating moc_animationdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 3 [ 41%] Generating ui_animationdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationdialog.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= Scanning dependencies of target animationextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/trajvideomaker.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/moveatomcommand.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/animationdialog.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx Linking CXX shared module ../../../lib64/manipulatetool.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,manipulatetool.so -o ../../../lib64/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Built target manipulatetool make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o Generating qrc_cartesianextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/rcc -name cartesianextension -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/cartesianextension.qrc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povpainter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Generating moc_cartesianextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/cartesianextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 41%] Generating ui_cartesianeditor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/cartesianeditor.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 42 [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povpainter.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povpainter.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/cartesianextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/trajvideomaker.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcartesianextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx Linking CXX shared module ../../../lib64/cartesianextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,cartesianextension.so -o ../../../lib64/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 42 [ 42%] Built target cartesianextension make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating ui_fileimportdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/fileimportdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating moc_fileimportextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/fileimportextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dfileimportextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/fileimportextension.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Danimationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx Linking CXX shared module ../../../lib64/animationextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,animationextension.so -o ../../../lib64/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 3 [ 42%] Built target animationextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating ui_conformersearchdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating moc_forcefieldextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefieldextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating moc_forcefielddialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefielddialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating moc_constraintsdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating moc_constraintsmodel.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsmodel.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating moc_conformersearchdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating ui_forcefielddialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefielddialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 42%] Generating ui_constraintsdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= Scanning dependencies of target forcefieldextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 53 [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefieldextension.h:27, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dfileimportextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefieldextension.cpp:32:0: /usr/include/openbabel-2.0/openbabel/conformersearch.h: In member function 'void OpenBabel::OBConformerSearch::SetFilter(OpenBabel::OBConformerFilter*)': /usr/include/openbabel-2.0/openbabel/conformersearch.h:260:16: warning: deleting object of abstract class type 'OpenBabel::OBConformerFilter' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_filter; ^ /usr/include/openbabel-2.0/openbabel/conformersearch.h: In member function 'void OpenBabel::OBConformerSearch::SetScore(OpenBabel::OBConformerScore*)': /usr/include/openbabel-2.0/openbabel/conformersearch.h:274:16: warning: deleting object of abstract class type 'OpenBabel::OBConformerScore' which has non-virtual destructor will cause undefined behaviour [-Wdelete-non-virtual-dtor] delete m_score; ^ Linking CXX shared module ../../../lib64/fileimportextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,fileimportextension.so -o ../../../lib64/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Generating moc_gl2psextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2psextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2psextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/forcefielddialog.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DNDEBUG -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps/gl2ps.c /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgl2psextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx Linking CXX shared module ../../../lib64/gl2psextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,gl2psextension.so -o ../../../lib64/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Generating moc_h2methylextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/h2methylextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dh2methylextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/h2methylextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/h2methylextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 57 [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dh2methylextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/h2methylextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,h2methylextension.so -o ../../../lib64/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 57 [ 44%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 44%] Generating moc_hydrogensextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/hydrogensextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= Scanning dependencies of target hydrogensextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/hydrogensextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:27, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/hydrogensextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,hydrogensextension.so -o ../../../lib64/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 44%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 64 [ 45%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertdnadialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 45%] Generating moc_insertdnaextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertdnaextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertdnaextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertdnaextension.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 45%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 54 [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx Linking CXX shared module ../../../lib64/insertdnaextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,insertdnaextension.so -o ../../../lib64/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 64 [ 46%] Built target insertdnaextension make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Generating moc_insertfragmentextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Generating moc_insertfragmentdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Generating moc_sortfiltertreeproxymodel.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/sortfiltertreeproxymodel.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentextension.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/forcefieldextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,forcefieldextension.so -o ../../../lib64/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 53 54 [ 46%] Built target forcefieldextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Generating ui_insertpeptidedialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertpeptidedialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 46%] Generating moc_insertpeptideextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertpeptideextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 66 [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertpeptideextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 65 [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.cpp:29:0: /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/config.h:41:0: warning: "EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API" redefined [enabled by default] #define EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API ^ :0:0: note: this is the location of the previous definition In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertfragmentdialog.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx Linking CXX shared module ../../../lib64/insertpeptideextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,insertpeptideextension.so -o ../../../lib64/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 66 [ 48%] Built target insertpeptideextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Generating moc_invertchiralextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/invertchiralextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= Scanning dependencies of target invertchiralextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/invertchiralextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/invertchiralextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx Linking CXX shared module ../../../lib64/insertfragmentextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,insertfragmentextension.so -o ../../../lib64/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 65 [ 48%] Built target insertfragmentextension make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 48%] Generating ui_molecularpropdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/molecularpropdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 68 [ 49%] Generating moc_molecularpropextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/molecularpropextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/molecularpropextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/invertchiralextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,invertchiralextension.so -o ../../../lib64/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 49%] Built target invertchiralextension make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 71 [ 50%] Generating moc_networkfetchextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/networkfetchextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/networkfetchextension.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/networkfetchextension.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/molecularpropextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,molecularpropextension.so -o ../../../lib64/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lQtNetwork -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 68 [ 50%] Built target molecularpropextension make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Generating ui_povraydialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Generating moc_povrayextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povrayextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Generating moc_povraydialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= Scanning dependencies of target povrayextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povrayextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx Linking CXX shared module ../../../lib64/networkfetchextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,networkfetchextension.so -o ../../../lib64/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lQtNetwork -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 71 [ 50%] Built target networkfetchextension make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Generating moc_propextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Generating __/tools/moc_skeletontree.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Generating moc_propmodel.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propmodel.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target propextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.h:36, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povpainter.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povpainter.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propmodel.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 75 [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpovrayextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/propextension.dir/propextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/propextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/povrayextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,povrayextension.so -o ../../../lib64/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 75 [ 51%] Built target povrayextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 51%] Generating ui_pythonterminalwidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/pythonterminalwidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 51%] Generating moc_pythonterminal.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/pythonterminal.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 51%] Generating moc_highlighter.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/highlighter.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= Scanning dependencies of target pythonterminal make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 81 [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/pythonterminal.h:27, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 76 [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:36, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/pythonterminal.cpp:24:0: /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../config.h:41:0: warning: "EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API" redefined [enabled by default] #define EIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API ^ :0:0: note: this is the location of the previous definition /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpropextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/highlighter.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx Linking CXX shared module ../../../lib64/propextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,propextension.so -o ../../../lib64/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:27, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 76 [ 53%] Built target propextension make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating moc_selectextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/selectextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= Scanning dependencies of target selectextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/selectextension.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dselectextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx Linking CXX shared module ../../../lib64/selectextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,selectextension.so -o ../../../lib64/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Built target selectextension make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating ui_shaderdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/shaderdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating moc_shaderextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/shaderextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dshaderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/shaderextension.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dpythonterminal_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx Linking CXX shared module ../../../lib64/pythonterminal.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,pythonterminal.so -o ../../../lib64/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lpython2.7 -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 81 [ 53%] Built target pythonterminal make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/supercelldialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating moc_supercellextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/supercellextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating moc_supercelldialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/supercelldialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/supercellextension.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dshaderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx Linking CXX shared module ../../../lib64/shaderextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,shaderextension.so -o ../../../lib64/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -lGLEW -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Built target shaderextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 53%] Generating ui_ceviewoptionswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 44 [ 54%] Generating moc_crystallographyextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && 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/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystallographyextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating moc_crystalpastedialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating ui/moc_ceabstractdockwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating ui/moc_ceabstracteditor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating ui/moc_cecoordinateeditor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating ui/moc_cematrixeditor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating ui/moc_ceparametereditor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 54%] Generating ui/moc_ceslabbuilder.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 45 [ 55%] Generating ui/moc_cetranslatewidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui/moc_ceviewoptionswidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui_crystalpastedialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui_cecoordinateeditor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui_cematrixeditor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui_ceparametereditor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui_ceslabbuilder.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 55%] Generating ui_cetranslatewidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= Scanning dependencies of target crystallographyextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 46 [ 56%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/avospglib.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/supercelldialog.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 94 [ 57%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsupercellextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 57%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ceundo.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/supercellextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,supercellextension.so -o ../../../lib64/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 94 [ 57%] Built target supercellextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 57%] Generating ui_tab_cd.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_cd.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 57%] Generating moc_spectraextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectraextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 57%] Generating moc_spectradialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 57%] Generating moc_spectratype.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectratype.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 57%] Generating moc_abstract_ir.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 87 [ 58%] Generating moc_ir.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/ir.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating moc_nmr.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/nmr.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating moc_dos.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/dos.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating moc_uv.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/uv.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating moc_cd.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/cd.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating moc_raman.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/raman.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating ui_spectradialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 58%] Generating ui_tab_ir_raman.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_ir_raman.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 88 [ 59%] Generating ui_tab_nmr.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_nmr.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Generating ui_tab_dos.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_dos.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Generating ui_tab_uv.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/tab_uv.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target spectraextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectraextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:30: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectratype.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:24: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/ir.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 59%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../ceundo.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:20: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 89 [ 60%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/nmr.h:25, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 60%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 47 [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:22, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/dos.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/dos.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../ceundo.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/uv.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/uv.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/uv.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/cd.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/cd.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/raman.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/raman.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:27, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/../ceundo.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:21: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 61%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 90 [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:25, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 48 [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/../crystallographyextension.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:22, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:27, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/crystallographyextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,crystallographyextension.so -o ../../../../lib64/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext spglib/libspglib.a -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 44 45 46 47 48 [ 63%] Built target crystallographyextension make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 99 [ 64%] Generating ui_vibrationwidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_vibrationextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_vibrationwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/spectraextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,spectraextension.so -o ../../../../lib64/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 87 88 89 90 [ 64%] Built target spectraextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating ui_orbitalsettingsdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_orbitalextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_orbitalsettingsdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_orbitaltablemodel.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitaltablemodel.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_orbitalwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.h In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating moc_vdwsurface.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 64%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 72 [ 65%] Generating moc_htmldelegate.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/htmldelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 65%] Generating ui_orbitalwidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= Scanning dependencies of target orbitalextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalextension.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dvibrationextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:21: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/vibrationextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,vibrationextension.so -o ../../../../lib64/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 99 [ 65%] Built target vibrationextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 95 [ 66%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 66%] Generating moc_surfaceextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfaceextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 66%] Generating moc_surfacedialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -I/usr/include -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfaceextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 73 [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/htmldelegate.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:31, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:24, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/cube.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:33, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:33, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 96 [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx Linking CXX shared module ../../../../lib64/surfaceextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,surfaceextension.so -o ../../../../lib64/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../lib64/libavogadro.so.1.1.1 -lz -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dorbitalextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/surfaces -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 95 96 [ 68%] Built target surfaceextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Generating ui_swcntbuilderwidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Generating moc_swcntbuilderextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Generating moc_swcntbuilderwidget.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Generating moc_avotubegen.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/avotubegen.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= Scanning dependencies of target swcntbuilderextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/insertcommand.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/orbitalextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,orbitalextension.so -o ../../../../lib64/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro_OpenQube.so.0.1.0 ../../../../lib64/libavogadro.so.1.1.1 -lz -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 72 73 [ 68%] Built target orbitalextension make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 68%] Generating moc_qtaimextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimextension.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 82 [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:20: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.h:11, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 97 [ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/swcntbuilder -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx Linking CXX shared module ../../../../lib64/swcntbuilderextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,swcntbuilderextension.so -o ../../../../lib64/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext tubegen/libtubegen.a -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 97 [ 70%] Built target swcntbuilderextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating ui_gamessefpmatchdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating moc_inputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating moc_gamessextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessextension.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating moc_gamessinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating moc_gamesshighlighter.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamesshighlighter.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating moc_gamessefpmatchdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 70%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= Scanning dependencies of target gamessextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 55 [ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::minusThreeSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:181:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] Matrix evec = eigenvectorsOfASymmetricFourByFourMatrix(A); ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::minusOneSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:221:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] Matrix evec = eigenvectorsOfASymmetricThreeByThreeMatrix(A); ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::plusOneSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:261:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] Matrix evec = eigenvectorsOfASymmetricThreeByThreeMatrix(A); ^ /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp: In function 'Eigen::Matrix Avogadro::QTAIMMathUtilities::plusThreeSignatureLocatorGradient(const Eigen::Matrix&, const Eigen::Matrix&)': /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:302:25: warning: variable 'evec' set but not used [-Wunused-but-set-variable] Matrix evec = eigenvectorsOfASymmetricFourByFourMatrix(A); ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:33, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimwavefunction.h:40, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcubature.h:107, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:138: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 71%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 83 [ 72%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DEIGEN2_SUPPORT_STAGE20_RESOLVE_API_CONFLICTS -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dqtaimextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim -std=gnu++11 -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/qtaimextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,qtaimextension.so -o ../../../../lib64/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 82 83 [ 72%] Built target qtaimextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 72%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 58 [ 73%] Generating moc_inputfileextension.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputfileextension.h /usr/bin/cmake -E cmake_progress_report 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-DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/abinitinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 73%] Generating moc_daltoninputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 73%] Generating moc_gamessukinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 73%] Generating moc_gaussianinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 73%] Generating moc_molproinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 73%] Generating moc_mopacinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 73%] Generating moc_nwcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h /usr/bin/cmake -E cmake_progress_report 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-DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating moc_qcheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating moc_teracheminputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/teracheminputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating moc_lammpsinputdialog.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating ui_abinitinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating ui_gaussianinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating ui_daltoninputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 74%] Generating ui_gamessukinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 60 [ 75%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles Generating ui_molproinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.ui [ 75%] /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp [ 75%] Generating ui_mopacinputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Generating ui_nwcheminputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Generating ui_psi4inputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Generating ui_qcheminputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Generating ui_teracheminputdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= Scanning dependencies of target inputfileextension make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 75%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 61 [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 56 [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdata.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dgamessextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/gamessextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,gamessextension.so -o ../../../../lib64/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 55 56 [ 77%] Built target gamessextension make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 4 [ 78%] Generating moc_atomindexcolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/atomindexcolor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= Scanning dependencies of target atomindexcolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Datomindexcolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/atomindexcolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Datomindexcolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx Linking CXX shared module ../../../lib64/atomindexcolor.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,atomindexcolor.so -o ../../../lib64/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 4 [ 78%] Built target atomindexcolor make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 43 [ 79%] Generating moc_chargecolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/chargecolor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= Scanning dependencies of target chargecolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dchargecolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/chargecolor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/chargecolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dchargecolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx Linking CXX shared module ../../../lib64/chargecolor.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,chargecolor.so -o ../../../lib64/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 43 [ 79%] Built target chargecolor make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Generating moc_customcolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/customcolor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcustomcolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/customcolor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/customcolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dcustomcolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp Linking CXX shared module ../../../lib64/customcolor.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,customcolor.so -o ../../../lib64/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Generating moc_distancecolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/distancecolor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddistancecolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/distancecolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Ddistancecolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx Linking CXX shared module ../../../lib64/distancecolor.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,distancecolor.so -o ../../../lib64/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Built target distancecolor make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Generating ui_residuecolorsettings.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/residuecolorsettings.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Generating moc_residuecolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/residuecolor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dresiduecolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/residuecolor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/residue.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/residuecolor.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dresiduecolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx Linking CXX shared module ../../../lib64/residuecolor.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,residuecolor.so -o ../../../lib64/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Built target residuecolor make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Generating moc_smartscolor.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -DQT_PLUGIN -DQT_SHARED -DBOOST_TT_HAS_OPERATOR_HPP_INCLUDED -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/smartscolor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= Scanning dependencies of target smartscolor make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsmartscolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/colors/smartscolor.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dsmartscolor_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx Linking CXX shared module ../../../lib64/smartscolor.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,smartscolor.so -o ../../../lib64/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -L/usr/usr/lib64 ../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -lGLU -lGL -lSM -lICE -lX11 -lXext -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Built target smartscolor make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Generating moleculelist.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include -I/usr/include -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python/moleculelist.moc /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/moleculelist.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp Scanning dependencies of target python-module make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 79%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/residue.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/residue.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 62 [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/residue.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/primitivelist.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/primitivelist.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/mesh.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/mesh.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/mesh.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 63 [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 81%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/periodictableview.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 77 [ 82%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/molecule.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -DQT_TEST_LIB -D_BSD_SOURCE -Dinputfileextension_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/extensions/gl2ps -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/molecule.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../../lib64/inputfileextension.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,inputfileextension.so -o ../../../../lib64/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -L/usr/usr/lib64 ../../../../lib64/libavogadro.so.1.1.1 -lQtCore -lQtGui -lopenbabel -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 58 59 60 61 62 63 [ 82%] Built target inputfileextension make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/drawcommandtest.dir/DependInfo.cmake --color= Scanning dependencies of target drawcommandtest make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/drawcommandtest.dir/build.make libavogadro/tests/CMakeFiles/drawcommandtest.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/tests/CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/drawcommandtest.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/drawcommandtest.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX executable ../../bin/drawcommandtest cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawcommandtest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro CMakeFiles/drawcommandtest.dir/drawcommandtest.cpp.o -o ../../bin/drawcommandtest -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.1.1 -lQtCore -Wl,-rpath,/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64 make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Built target drawcommandtest make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculebench.dir/DependInfo.cmake --color= Scanning dependencies of target moleculebench make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculebench.dir/build.make libavogadro/tests/CMakeFiles/moleculebench.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/tests/CMakeFiles/moleculebench.dir/moleculebench.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/moleculebench.dir/moleculebench.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculebench.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculebench.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX executable ../../bin/moleculebench cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculebench.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro CMakeFiles/moleculebench.dir/moleculebench.cpp.o -o ../../bin/moleculebench -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.1.1 -lQtCore -Wl,-rpath,/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64 make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Built target moleculebench make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculefiletest.dir/DependInfo.cmake --color= Scanning dependencies of target moleculefiletest make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculefiletest.dir/build.make libavogadro/tests/CMakeFiles/moleculefiletest.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/tests/CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculefiletest.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/moleculefile.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculefiletest.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX executable ../../bin/moleculefiletest cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculefiletest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro CMakeFiles/moleculefiletest.dir/moleculefiletest.cpp.o -o ../../bin/moleculefiletest -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.1.1 -lQtCore -Wl,-rpath,/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64 make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Built target moleculefiletest make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/moleculetest.dir/DependInfo.cmake --color= Scanning dependencies of target moleculetest make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/moleculetest.dir/build.make libavogadro/tests/CMakeFiles/moleculetest.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/tests/CMakeFiles/moleculetest.dir/moleculetest.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/moleculetest.dir/moleculetest.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculetest.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculetest.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/primitive.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/primitive.cpp Linking CXX executable ../../bin/moleculetest cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/moleculetest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro CMakeFiles/moleculetest.dir/moleculetest.cpp.o -o ../../bin/moleculetest -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.1.1 -lQtCore -Wl,-rpath,/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64 make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Built target moleculetest make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests/CMakeFiles/neighborlisttest.dir/DependInfo.cmake --color= Scanning dependencies of target neighborlisttest make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f libavogadro/tests/CMakeFiles/neighborlisttest.dir/build.make libavogadro/tests/CMakeFiles/neighborlisttest.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Building CXX object libavogadro/tests/CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -DTESTDATADIR=\"/builddir/build/BUILD/avogadro-1.1.1/testfiles/\" -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -o CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/neighborlisttest.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/neighborlisttest.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/primitive.cpp:5: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX executable ../../bin/neighborlisttest cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/neighborlisttest.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro CMakeFiles/neighborlisttest.dir/neighborlisttest.cpp.o -o ../../bin/neighborlisttest -L/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -L/usr/usr/lib64 -rdynamic -lopenbabel -lQtOpenGL -lQtGui -lQtTest -lQtCore -lQtTest ../../lib64/libavogadro.so.1.1.1 -lQtCore -Wl,-rpath,/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src:/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64 make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Built target neighborlisttest make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Generating avogadro_fi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/fi.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fi.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fi.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fi.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Generating aboutdialog.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/aboutdialog.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/aboutdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Generating pluginsettings.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/pluginsettings.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginsettings.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 82%] Generating primitiveitemmodel.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/primitiveitemmodel.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/primitiveitemmodel.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 26 [ 83%] Generating enginecolorswidget.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/enginecolorswidget.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginecolorswidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating engineviewwidget.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/engineviewwidget.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineviewwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating savedialog.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/savedialog.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/savedialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating glgraphicsview.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/glgraphicsview.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/glgraphicsview.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating primitivetreeview.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/primitivetreeview.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/primitivetreeview.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating detachedview.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/detachedview.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/detachedview.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating pluginitemmodel.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/pluginitemmodel.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginitemmodel.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating mainwindow.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/mainwindow.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 83%] Generating projecttreeeditor.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/projecttreeeditor.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeeditor.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 27 [ 84%] Generating importdialog.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/importdialog.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/importdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating application.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/application.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/application.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating enginelistview.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/enginelistview.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginelistview.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating projecttreemodeldelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/projecttreemodeldelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating projecttreemodel.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/projecttreemodel.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating engineitemdelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/engineitemdelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineitemdelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating settingsdialog.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/settingsdialog.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/settingsdialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 84%] Generating flattabwidget.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/flattabwidget.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/flattabwidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 28 [ 85%] Generating engineprimitiveswidget.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/engineprimitiveswidget.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineprimitiveswidget.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating pluginlistview.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/pluginlistview.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginlistview.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating addenginedialog.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/addenginedialog.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/addenginedialog.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating engineitemmodel.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/engineitemmodel.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineitemmodel.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating bonddelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/bonddelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/bonddelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating selectiondelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/selectiondelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/selectiondelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating atomdelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/atomdelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/atomdelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating moleculedelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/moleculedelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/moleculedelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 85%] Generating residuedelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/residuedelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/residuedelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 29 [ 86%] Generating labeldelegate.moc cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/moc-qt4 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -I/usr/include -I/usr/include -I/usr/include/QtOpenGL -I/usr/include/QtGui -I/usr/include/QtTest -I/usr/include/QtNetwork -I/usr/include/QtCore -D_BSD_SOURCE -DHAVE_GCC_VISIBILITY -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_PYTHON -DENABLE_GLSL -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_TEST_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/labeldelegate.moc /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/labeldelegate.h /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] Generating ui_mainwindow.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_mainwindow.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] Generating ui_enginecolorswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_enginecolorswidget.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginecolorswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] Generating ui_addenginedialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_addenginedialog.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/addenginedialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] Generating ui_pluginsettings.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_pluginsettings.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginsettings.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] Generating ui_settingsdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_settingsdialog.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/settingsdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] Generating ui_importdialog.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_importdialog.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/importdialog.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 86%] [ 86%] Generating ui_projecttreeeditor.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_projecttreeeditor.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeeditor.ui Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/fragment.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/fragment.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 30 [ 87%] Generating ui_engineprimitiveswidget.h cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/uic-qt4 -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineprimitiveswidget.ui /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating qrc_avogadro.cxx cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/lib64/qt4/bin/rcc -name avogadro -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/qrc_avogadro.cxx /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/avogadro.qrc /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_eu.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/eu.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_eu.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_eu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_eu.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_eu.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_hu.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/hu.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hu.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hu.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hu.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hu.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_he.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/he.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_he.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_he.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_he.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_he.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_de.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/de.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_de.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_de.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_de.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_de.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_hr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/hr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_ru.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ru.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ru.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ru.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ru.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ru.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 87%] Generating avogadro_ja.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ja.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ja.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ja.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ja.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ja.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 31 [ 88%] Generating avogadro_el.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/el.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_el.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_el.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_el.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_el.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_hi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/hi.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hi.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hi.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_hi.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_ca@valencia.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ca@valencia.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca@valencia.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_da.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/da.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_da.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_da.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_da.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_da.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_en_AU.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/en_AU.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_AU.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_kn.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/kn.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_kn.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_kn.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_kn.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_kn.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_ta.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ta.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ta.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ta.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ta.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ta.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 88%] Generating avogadro_it.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/it.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_it.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_it.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_it.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_it.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 32 [ 89%] Generating avogadro_en_GB.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/en_GB.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_GB.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_sr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/sr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_pt.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/pt.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_bg.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/bg.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_bg.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_bg.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_bg.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_bg.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_cs.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/cs.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_cs.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_cs.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_cs.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_cs.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_id.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/id.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_id.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_id.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_id.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_id.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_es.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/es.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_es.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_es.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_es.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_es.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_gl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/gl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_gl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_gl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_gl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_gl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 89%] Generating avogadro_zh_CN.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/zh_CN.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_CN.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 33 [ 90%] Generating avogadro_tr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/tr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_tr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_tr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_tr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_tr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_ms.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ms.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ms.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ms.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ms.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ms.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_ko.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ko.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ko.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ko.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ko.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ko.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_vi.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/vi.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_vi.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_vi.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_vi.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_vi.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_pl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/pl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_ug.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ug.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ug.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ug.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ug.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ug.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_sv.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/sv.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sv.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sv.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sv.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sv.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_pt_BR.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/pt_BR.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_pt_BR.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 90%] Generating avogadro_oc.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/oc.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_oc.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_oc.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_oc.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_oc.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 34 [ 91%] Generating avogadro_fr.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/fr.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fr.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fr.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fr.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_fr.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_nl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/nl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_ar.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ar.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ar.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ar.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ar.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ar.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_nb.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/nb.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nb.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nb.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nb.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_nb.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_af.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/af.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_af.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_af.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_af.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_af.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_sl.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/sl.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sl.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sl.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sl.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sl.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_ca.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/ca.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_ca.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 91%] Generating avogadro_th.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/th.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_th.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_th.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_th.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_th.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 35 [ 92%] Generating avogadro_zh_TW.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/zh_TW.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_zh_TW.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Generating avogadro_sq.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/sq.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sq.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sq.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sq.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sq.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Generating avogadro_sk.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/sk.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sk.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sk.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_sk.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Generating avogadro_et.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/et.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_et.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_et.ts In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/fragment.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_et.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_et.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Generating avogadro_en_CA.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/en_CA.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_en_CA.qm /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Generating avogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lconvert -i /builddir/build/BUILD/avogadro-1.1.1/i18n/avogadro/uk.po -o /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_uk.ts cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src -silent -noobsolete -ts /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_uk.ts Scanning directory '/builddir/build/BUILD/avogadro-1.1.1/avogadro/src'... cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_uk.ts -qm /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/avogadro_uk.qm cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadro-1.1.1 /builddir/build/BUILD/avogadro-1.1.1/avogadro/src /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro-app make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[2]: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/aboutdialog.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginsettings.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 92%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/engine.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/engine.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 36 [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/editcommands.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/editcommands.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/editcommands.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/primitiveitemmodel.cpp:31: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/engine.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginecolorswidget.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineviewwidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineviewwidget.cpp:30: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/savedialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/savedialog.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/atom.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/atom.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/glgraphicsview.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/glgraphicsview.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/primitivetreeview.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/primitivetreeview.cpp:29: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/detachedview.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/atom.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/detachedview.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 37 [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginitemmodel.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/qlist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/qlist.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeeditor.h:48, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeeditor.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/qlist.cpp:8: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/importdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/importdialog.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/application.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/application.cpp:23: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginelistview.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/enginelistview.cpp:26: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/swig.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/swig.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/swig.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineitemdelegate.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 38 [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.cpp:25: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/toolgroup.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/settingsdialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projecttreeeditor.h:48, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/settingsdialog.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/flattabwidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/toolgroup.cpp:6: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineprimitiveswidget.cpp:30: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/pluginlistview.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/main.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/mainwindow.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/main.cpp:50: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 78 [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/qstring.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/qstring.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/addenginedialog.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/addenginedialog.cpp:27: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineitemmodel.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/engineitemmodel.cpp:28: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 39 [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/bonddelegate.h:26, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/sip.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/sip.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/selectiondelegate.h:26, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/atomdelegate.h:26, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/sip.cpp:7: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/moleculedelegate.h:26, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/residuedelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/residuedelegate.h:26, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/eigen.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/eigen.cpp In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/eigen.cpp:3: /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreeitem.h:29, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodel.h:30, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/../projecttreemodeldelegate.h:27, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/labeldelegate.h:26, from /builddir/build/BUILD/avogadro-1.1.1/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/avogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtNetwork -isystem /usr/include/QtCore -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src/qrc_avogadro.cxx Linking CXX executable ../../bin/avogadro cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -L/usr/usr/lib64 -rdynamic -lQtOpenGL -lQtGui -lQtTest -lQtNetwork -lQtCore -lopenbabel ../../lib64/libavogadro.so.1.1.1 -lX11 -lboost_python-mt -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 26 27 28 29 30 31 32 33 34 35 36 37 38 39 [ 97%] Built target avogadro-app /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/std_vector.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/std_vector.cpp:6: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. 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(Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/camera.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/camera.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/moleculelist.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /usr/include/eigen3/Eigen/Geometry:4, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/camera.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/camera.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/moleculelist.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/elementtranslator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 79 [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/plugin.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/plugin.cpp 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-I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/meshgenerator.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/color.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/color.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/meshgenerator.h:30, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/meshgenerator.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/color.cpp:6: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/glwidget.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/neighborlist.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/glwidget.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/neighborlist.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/neighborlist.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/cube.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/cube.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/cube.cpp:5: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/painterdevice.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/painter.h:33, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/painterdevice.h:28, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/painterdevice.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/bond.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/bond.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/pluginmanager.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/atom.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/bond.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitivelist.h:29, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/engine.h:37, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/pluginmanager.cpp:8: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 80 [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/animation.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/animation.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/animation.h:31, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/animation.cpp:5: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/navigate.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/navigate.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/extension.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/extension.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/navigate.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/navigate.cpp:4: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/extension.cpp:5: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/main.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/main.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DEIGEN2_SUPPORT_STAGE10_FULL_EIGEN2_API -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_TEST_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -fPIC -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include -isystem /usr/include/QtOpenGL -isystem /usr/include/QtGui -isystem /usr/include/QtTest -isystem /usr/include/QtCore -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src -I/usr/include/eigen3 -I/usr/include/openbabel-2.0 -I/usr/include/python2.7 -I/builddir/build/BUILD/avogadro-1.1.1/libavogadro/include -I/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python -I/usr/lib64/python2.7/site-packages/numpy/core/include -o CMakeFiles/python-module.dir/tool.cpp.o -c /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/tool.cpp In file included from /usr/include/eigen3/Eigen/Core:373:0, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/primitive.h:34, from /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /builddir/build/BUILD/avogadro-1.1.1/libavogadro/src/python/tool.cpp:6: /usr/include/eigen3/Eigen/Eigen2Support:20:2: warning: #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" [-Wcpp] #warning "Eigen2 support is deprecated in Eigen 3.2.x and it will be removed in Eigen 3.3. (Define EIGEN_NO_EIGEN2_DEPRECATED_WARNING to disable this warning)" ^ Linking CXX shared module ../../../lib64/Avogadro.so cd /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -O2 -DNDEBUG -DQT_NO_DEBUG_OUTPUT -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -shared -Wl,-soname,Avogadro.so -o ../../../lib64/Avogadro.so CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o 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CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/tool.cpp.o -L/usr/usr/lib64 -lstdc++ ../../../lib64/libavogadro.so.1.1.1 -lQtOpenGL -lQtGui -lQtTest -lQtCore -lpython2.7 -lboost_python-mt -Wl,-rpath,/usr/usr/lib64:/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/lib64: make[2]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu/CMakeFiles 77 78 79 80 [100%] Built target python-module make[1]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_start 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make[1]: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/AvogadroConfig.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/AvogadroConfigVersion.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/AvogadroUse.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/cmake/FindEigen2.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/cmake/FindEigen3.cmake -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/cmake/FindGLEW.cmake -- Installing: 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/builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/pixmaps/avogadro-icon.png -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/man/man1/avopkg.1 -- Installing: /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/man/man1/avogadro.1 make: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64 libavogadro --with-qt --without-mo + /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64 avogadro --with-qt --without-mo + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/avogadro-1.1.1 extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/bin/avogadro extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/python2.7/site-packages/Avogadro.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/libavogadro_OpenQube.so.0.1.0 extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/libavogadro.so.1.1.1 extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/colors/smartscolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/colors/customcolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/colors/distancecolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/colors/chargecolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/colors/atomindexcolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/colors/residuecolor.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/gamessextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/inputfileextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/qtaimextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/swcntbuilderextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/orbitalextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/surfaceextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/spectraextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/vibrationextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/crystallographyextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/gl2psextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/networkfetchextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/supercellextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/shaderextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/fileimportextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/povrayextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/animationextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/pythonterminal.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/h2methylextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/insertdnaextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/insertpeptideextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/insertfragmentextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/selectextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/invertchiralextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/hydrogensextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/forcefieldextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/molecularpropextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/cartesianextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/extensions/propextension.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/aligntool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/autorotatetool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/manipulatetool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/autoopttool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/selectrotatetool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/clickmeasuretool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/bondcentrictool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/tools/drawtool.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/qtaimengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/simplewireengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/dipoleengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/axesengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/surfaceengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/polygonengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/ringengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/cartoonengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/ribbonengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/stickengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/sphereengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/forceengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/hbondengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/wireengine.so extracting debug info from /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/avogadro/engines/labelengine.so /usr/lib/rpm/sepdebugcrcfix: Updated 61 CRC32s, 0 CRC32s did match. symlinked /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.0.1.0.debug to /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.debug symlinked /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.0.1.0.debug to /usr/lib/debug/usr/lib64/libavogadro_OpenQube.so.0.debug symlinked /usr/lib/debug/usr/lib64/libavogadro.so.1.1.1.debug to /usr/lib/debug/usr/lib64/libavogadro.so.debug symlinked /usr/lib/debug/usr/lib64/libavogadro.so.1.1.1.debug to /usr/lib/debug/usr/lib64/libavogadro.so.1.debug 15581 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.XqrYNQ + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.1.1 + desktop-file-validate /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/applications/avogadro.desktop /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/applications/avogadro.desktop: hint: value "Qt;Science;Chemistry;Physics;Education;" for key "Categories" in group "Desktop Entry" contains more than one main category; application might appear more than once in the application menu + xvfb-run -a dbus-launch --exit-with-session make test ARGS=--output-on-failure -C x86_64-redhat-linux-gnu make: Entering directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure Test project /builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu Start 1: drawcommandTest 1/5 Test #1: drawcommandTest .................. Passed 0.72 sec Start 2: moleculeTest 2/5 Test #2: moleculeTest .....................***Failed 0.02 sec ********* Start testing of MoleculeTest ********* Config: Using QTest library 4.8.5, Qt 4.8.5 PASS : MoleculeTest::initTestCase() PASS : MoleculeTest::addAtom() PASS : MoleculeTest::setAtomPos() PASS : MoleculeTest::atomPos() PASS : MoleculeTest::atom() PASS : MoleculeTest::atomById() PASS : MoleculeTest::atoms() PASS : MoleculeTest::removeAtom() PASS : MoleculeTest::addBond() PASS : MoleculeTest::removeBond() PASS : MoleculeTest::center() PASS : MoleculeTest::normalVector() FAIL! : MoleculeTest::radius() Compared doubles are not the same (fuzzy compare) Actual (m_molecule->radius()): 1.5 Expected (1.24373429638327494): 1.24373 Loc: [/builddir/build/BUILD/avogadro-1.1.1/libavogadro/tests/moleculetest.cpp(292)] PASS : MoleculeTest::farthestAtom() PASS : MoleculeTest::translate() PASS : MoleculeTest::conformers() PASS : MoleculeTest::cleanupTestCase() Totals: 16 passed, 1 failed, 0 skipped ********* Finished testing of MoleculeTest ********* Start 3: moleculefileTest 3/5 Test #3: moleculefileTest ................. Passed 0.07 sec Start 4: neighborlistTest 4/5 Test #4: neighborlistTest ................. Passed 0.10 sec Start 5: moleculeBench 5/5 Test #5: moleculeBench .................... Passed 90.31 sec 80% tests passed, 1 tests failed out of 5 Label Time Summary: avogadro = 91.22 sec Total Test time (real) = 91.23 sec The following tests FAILED: 2 - moleculeTest (Failed) Errors while running CTest make: *** [test] Error 8 make: Leaving directory `/builddir/build/BUILD/avogadro-1.1.1/x86_64-redhat-linux-gnu' + : + exit 0 Processing files: avogadro-1.1.1-10.el7.centos.x86_64 Provides: application() application(avogadro.desktop) avogadro = 1.1.1-10.el7.centos avogadro(x86-64) = 1.1.1-10.el7.centos mimehandler(chemical/x-cif) mimehandler(chemical/x-cml) mimehandler(chemical/x-daylight-smiles) mimehandler(chemical/x-gamess-input) mimehandler(chemical/x-gamess-output) mimehandler(chemical/x-gaussian-checkpoint) mimehandler(chemical/x-gaussian-cube) mimehandler(chemical/x-gaussian-log) mimehandler(chemical/x-mopac-out) mimehandler(chemical/x-pdb) mimehandler(chemical/x-qchem-output) mimehandler(chemical/x-xyz) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh libQtCore.so.4()(64bit) libQtGui.so.4()(64bit) libQtNetwork.so.4()(64bit) libQtOpenGL.so.4()(64bit) libQtTest.so.4()(64bit) libX11.so.6()(64bit) libavogadro.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenbabel.so.4()(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: avogadro-libs-1.1.1-10.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.jPaVcS + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.1.1 + DOCDIR=/builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/doc/avogadro-libs-1.1.1 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/doc/avogadro-libs-1.1.1 + cp -pr AUTHORS /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/doc/avogadro-libs-1.1.1 + cp -pr ChangeLog /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/doc/avogadro-libs-1.1.1 + cp -pr COPYING /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64/usr/share/doc/avogadro-libs-1.1.1 + exit 0 Provides: avogadro-libs = 1.1.1-10.el7.centos avogadro-libs(x86-64) = 1.1.1-10.el7.centos libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires(post): /sbin/ldconfig Requires(postun): /sbin/ldconfig Requires: libGL.so.1()(64bit) libGLEW.so.1.10()(64bit) libGLU.so.1()(64bit) libICE.so.6()(64bit) libQtCore.so.4()(64bit) libQtGui.so.4()(64bit) libQtNetwork.so.4()(64bit) libQtOpenGL.so.4()(64bit) libQtTest.so.4()(64bit) libSM.so.6()(64bit) libX11.so.6()(64bit) libXext.so.6()(64bit) libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) libboost_python-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenbabel.so.4()(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) python(abi) = 2.7 rtld(GNU_HASH) Processing files: avogadro-devel-1.1.1-10.el7.centos.x86_64 Provides: avogadro-devel = 1.1.1-10.el7.centos avogadro-devel(x86-64) = 1.1.1-10.el7.centos pkgconfig(avogadro) = 1.1.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libavogadro.so.1()(64bit) libavogadro_OpenQube.so.0()(64bit) pkgconfig(eigen3) Processing files: avogadro-debuginfo-1.1.1-10.el7.centos.x86_64 Provides: avogadro-debuginfo = 1.1.1-10.el7.centos avogadro-debuginfo(x86-64) = 1.1.1-10.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64 Wrote: /builddir/build/RPMS/avogadro-1.1.1-10.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro-libs-1.1.1-10.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro-devel-1.1.1-10.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro-debuginfo-1.1.1-10.el7.centos.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.RloqoZ + umask 022 + cd /builddir/build/BUILD + cd avogadro-1.1.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro-1.1.1-10.el7.centos.x86_64 + exit 0 Child return code was: 0