Warning: Permanently added '54.166.142.57' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5941827 --chroot fedora-rawhide-x86_64 --detached Version: 0.64 PID: 34861 Logging PID: 34862 Task: {'appstream': False, 'background': False, 'build_id': 5941827, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '597967cd526102a2959b06ac019a73efb718f688', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/mmuzila/libtiff-4.5/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-4.fc38', 'project_dirname': 'libtiff-4.5', 'project_name': 'libtiff-4.5', 'project_owner': 'mmuzila', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/mmuzila/libtiff-4.5/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'mmuzila/libtiff-4.5--mmuzila', 'source_json': {}, 'source_type': None, 'submitter': 'mmuzila', 'tags': [], 'task_id': '5941827-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/mmuzila/libtiff-4.5/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/mmuzila/libtiff-4.5/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn'... Running: git checkout 597967cd526102a2959b06ac019a73efb718f688 cmd: ['git', 'checkout', '597967cd526102a2959b06ac019a73efb718f688'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn rc: 0 stdout: stderr: Note: switching to '597967cd526102a2959b06ac019a73efb718f688'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 597967c automatic import of smoldyn Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/mmuzila/libtiff-4.5/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 92.0M 100 92.0M 0 0 44.9M 0 0:00:02 0:00:02 --:--:-- 44.9M INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1684773546.146583 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1684773546.146583/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 45 MB/s | 3.8 MB 00:00 fedora 47 MB/s | 71 MB 00:01 Last metadata expiration check: 0:00:01 ago on Mon May 22 16:39:09 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf noarch 4.15.1-1.fc39 fedora 475 k dnf-plugins-core noarch 4.4.1-1.fc39 fedora 38 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k audit-libs x86_64 3.1.1-1.fc39 fedora 117 k basesystem noarch 11-15.fc38 fedora 7.0 k bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M crypto-policies noarch 20230420-1.git3d08ae7.fc39 fedora 94 k curl x86_64 8.1.0-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k dbus-libs x86_64 1:1.14.6-1.fc38 fedora 156 k dnf-data noarch 4.15.1-1.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-2.fc39 fedora 15 k elfutils-libelf x86_64 0.189-2.fc39 fedora 196 k elfutils-libs x86_64 0.189-2.fc39 fedora 260 k expat x86_64 2.5.0-2.fc38 fedora 110 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.11 fedora 12 k fedora-release-common noarch 39-0.11 fedora 22 k fedora-release-identity-basic noarch 39-0.11 fedora 13 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M findutils x86_64 1:4.9.0-4.fc39 fedora 491 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k glib2 x86_64 2.76.2-1.fc39 fedora 2.8 M glibc x86_64 2.37.9000-10.fc39 fedora 2.1 M glibc-common x86_64 2.37.9000-10.fc39 fedora 331 k glibc-minimal-langpack x86_64 2.37.9000-10.fc39 fedora 53 k gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnupg2 x86_64 2.4.1-1.fc39 fedora 2.6 M gnutls x86_64 3.8.0-3.fc39 fedora 1.1 M gpgme x86_64 1.17.1-5.fc39 fedora 206 k grep x86_64 3.9-1.fc39 fedora 295 k ima-evm-utils x86_64 1.4-7.fc38 fedora 62 k json-c x86_64 0.16-4.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-9.fc39 fedora 727 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libassuan x86_64 2.5.5-6.fc38 fedora 67 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid x86_64 2.39-2.fc39 fedora 116 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcomps x86_64 0.1.19-1.fc39 fedora 77 k libcurl x86_64 8.1.0-1.fc39 fedora 323 k libdnf x86_64 0.70.1-1.fc39 fedora 667 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libfsverity x86_64 1.4-9.fc38 fedora 19 k libgcc x86_64 13.1.1-2.fc39 fedora 106 k libgcrypt x86_64 1.10.2-1.fc39 fedora 514 k libgomp x86_64 13.1.1-2.fc39 fedora 316 k libgpg-error x86_64 1.47-1.fc39 fedora 230 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libksba x86_64 1.6.3-2.fc38 fedora 159 k libmodulemd x86_64 2.15.0-2.fc39 fedora 231 k libmount x86_64 2.39-2.fc39 fedora 154 k libnghttp2 x86_64 1.53.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k librepo x86_64 1.15.1-2.fc38 fedora 96 k libreport-filesystem noarch 2.17.10-1.fc39 fedora 14 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39-2.fc39 fedora 67 k libsolv x86_64 0.7.24-2.fc39 fedora 425 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-2.fc39 fedora 860 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libuuid x86_64 2.39-2.fc39 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.33-7.fc39 fedora 120 k libxml2 x86_64 2.10.4-1.fc39 fedora 700 k libyaml x86_64 0.2.5-9.fc38 fedora 59 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k nettle x86_64 3.8-3.fc38 fedora 412 k npth x86_64 1.6-13.fc39 fedora 24 k openldap x86_64 2.6.4-2.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230318-1.fc39 fedora 60 k python-pip-wheel noarch 23.0.1-2.fc39 fedora 1.4 M python-setuptools-wheel noarch 67.7.2-2.fc39 fedora 661 k python3 x86_64 3.11.3-1.fc39 fedora 28 k python3-dateutil noarch 1:2.8.2-6.fc39 fedora 360 k python3-dbus x86_64 1.3.2-2.fc38 fedora 157 k python3-distro noarch 1.8.0-3.fc39 fedora 49 k python3-dnf noarch 4.15.1-1.fc39 fedora 603 k python3-dnf-plugins-core noarch 4.4.1-1.fc39 fedora 299 k python3-gpg x86_64 1.17.1-5.fc39 fedora 295 k python3-hawkey x86_64 0.70.1-1.fc39 fedora 107 k python3-libcomps x86_64 0.1.19-1.fc39 fedora 47 k python3-libdnf x86_64 0.70.1-1.fc39 fedora 826 k python3-libs x86_64 3.11.3-1.fc39 fedora 9.6 M python3-rpm x86_64 4.18.1-3.fc39 fedora 72 k python3-six noarch 1.16.0-9.fc38 fedora 42 k python3-systemd x86_64 235-2.fc38 fedora 108 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-3.fc39 fedora 571 k rpm-build-libs x86_64 4.18.1-3.fc39 fedora 94 k rpm-libs x86_64 4.18.1-3.fc39 fedora 312 k rpm-sequoia x86_64 1.4.0-3.fc39 fedora 848 k rpm-sign-libs x86_64 4.18.1-3.fc39 fedora 26 k sed x86_64 4.8-12.fc38 fedora 306 k setup noarch 2.14.3-3.fc39 fedora 152 k shadow-utils x86_64 2:4.13-6.fc39 fedora 1.3 M sqlite-libs x86_64 3.41.2-1.fc39 fedora 669 k systemd-libs x86_64 253.4-1.fc39 fedora 652 k tpm2-tss x86_64 4.0.1-3.fc38 fedora 675 k tzdata noarch 2023c-1.fc39 fedora 718 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zchunk-libs x86_64 1.3.1-1.fc39 fedora 52 k zlib x86_64 1.2.13-3.fc38 fedora 95 k Transaction Summary ================================================================================ Install 140 Packages Total download size: 58 M Installed size: 204 M Downloading Packages: (1/140): basesystem-11-15.fc38.noarch.rpm 119 kB/s | 7.0 kB 00:00 (2/140): audit-libs-3.1.1-1.fc39.x86_64.rpm 1.9 MB/s | 117 kB 00:00 (3/140): alternatives-1.24-1.fc39.x86_64.rpm 634 kB/s | 39 kB 00:00 (4/140): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 5.6 MB/s | 41 kB 00:00 (5/140): bash-5.2.15-3.fc38.x86_64.rpm 151 MB/s | 1.8 MB 00:00 (6/140): ca-certificates-2023.2.60-2.fc38.noarc 71 MB/s | 845 kB 00:00 (7/140): coreutils-9.3-1.fc39.x86_64.rpm 156 MB/s | 1.1 MB 00:00 (8/140): coreutils-common-9.3-1.fc39.x86_64.rpm 186 MB/s | 2.1 MB 00:00 (9/140): crypto-policies-20230420-1.git3d08ae7. 11 MB/s | 94 kB 00:00 (10/140): curl-8.1.0-1.fc39.x86_64.rpm 58 MB/s | 345 kB 00:00 (11/140): dbus-libs-1.14.6-1.fc38.x86_64.rpm 77 MB/s | 156 kB 00:00 (12/140): dnf-4.15.1-1.fc39.noarch.rpm 107 MB/s | 475 kB 00:00 (13/140): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 115 MB/s | 792 kB 00:00 (14/140): dnf-data-4.15.1-1.fc39.noarch.rpm 8.2 MB/s | 38 kB 00:00 (15/140): dnf-plugins-core-4.4.1-1.fc39.noarch. 20 MB/s | 38 kB 00:00 (16/140): elfutils-default-yama-scope-0.189-2.f 7.4 MB/s | 15 kB 00:00 (17/140): elfutils-libelf-0.189-2.fc39.x86_64.r 60 MB/s | 196 kB 00:00 (18/140): elfutils-libs-0.189-2.fc39.x86_64.rpm 69 MB/s | 260 kB 00:00 (19/140): expat-2.5.0-2.fc38.x86_64.rpm 42 MB/s | 110 kB 00:00 (20/140): fedora-gpg-keys-39-0.1.noarch.rpm 52 MB/s | 126 kB 00:00 (21/140): fedora-release-39-0.11.noarch.rpm 5.2 MB/s | 12 kB 00:00 (22/140): fedora-release-common-39-0.11.noarch. 8.2 MB/s | 22 kB 00:00 (23/140): fedora-release-identity-basic-39-0.11 7.0 MB/s | 13 kB 00:00 (24/140): fedora-repos-39-0.1.noarch.rpm 5.6 MB/s | 9.4 kB 00:00 (25/140): fedora-repos-rawhide-39-0.1.noarch.rp 4.9 MB/s | 9.0 kB 00:00 (26/140): file-libs-5.44-3.fc39.x86_64.rpm 169 MB/s | 730 kB 00:00 (27/140): findutils-4.9.0-4.fc39.x86_64.rpm 94 MB/s | 491 kB 00:00 (28/140): filesystem-3.18-4.fc39.x86_64.rpm 135 MB/s | 1.1 MB 00:00 (29/140): gawk-5.1.1-5.fc38.x86_64.rpm 139 MB/s | 1.0 MB 00:00 (30/140): gdbm-libs-1.23-3.fc38.x86_64.rpm 8.7 MB/s | 56 kB 00:00 (31/140): glib2-2.76.2-1.fc39.x86_64.rpm 286 MB/s | 2.8 MB 00:00 (32/140): glibc-common-2.37.9000-10.fc39.x86_64 60 MB/s | 331 kB 00:00 (33/140): glibc-2.37.9000-10.fc39.x86_64.rpm 142 MB/s | 2.1 MB 00:00 (34/140): glibc-minimal-langpack-2.37.9000-10.f 6.1 MB/s | 53 kB 00:00 (35/140): gmp-6.2.1-4.fc38.x86_64.rpm 45 MB/s | 313 kB 00:00 (36/140): gnutls-3.8.0-3.fc39.x86_64.rpm 240 MB/s | 1.1 MB 00:00 (37/140): gpgme-1.17.1-5.fc39.x86_64.rpm 25 MB/s | 206 kB 00:00 (38/140): gnupg2-2.4.1-1.fc39.x86_64.rpm 177 MB/s | 2.6 MB 00:00 (39/140): grep-3.9-1.fc39.x86_64.rpm 31 MB/s | 295 kB 00:00 (40/140): ima-evm-utils-1.4-7.fc38.x86_64.rpm 10 MB/s | 62 kB 00:00 (41/140): json-c-0.16-4.fc38.x86_64.rpm 22 MB/s | 41 kB 00:00 (42/140): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 14 MB/s | 31 kB 00:00 (43/140): libacl-2.3.1-7.fc39.x86_64.rpm 7.5 MB/s | 23 kB 00:00 (44/140): krb5-libs-1.20.1-9.fc39.x86_64.rpm 137 MB/s | 727 kB 00:00 (45/140): libarchive-3.6.1-5.fc39.x86_64.rpm 84 MB/s | 400 kB 00:00 (46/140): libassuan-2.5.5-6.fc38.x86_64.rpm 16 MB/s | 67 kB 00:00 (47/140): libattr-2.5.1-7.fc39.x86_64.rpm 7.8 MB/s | 18 kB 00:00 (48/140): libb2-0.98.1-8.fc38.x86_64.rpm 18 MB/s | 25 kB 00:00 (49/140): libblkid-2.39-2.fc39.x86_64.rpm 58 MB/s | 116 kB 00:00 (50/140): libbrotli-1.0.9-11.fc38.x86_64.rpm 100 MB/s | 317 kB 00:00 (51/140): libcap-2.48-6.fc38.x86_64.rpm 22 MB/s | 67 kB 00:00 (52/140): libcap-ng-0.8.3-5.fc38.x86_64.rpm 12 MB/s | 32 kB 00:00 (53/140): libcom_err-1.46.5-4.fc38.x86_64.rpm 11 MB/s | 26 kB 00:00 (54/140): libcomps-0.1.19-1.fc39.x86_64.rpm 26 MB/s | 77 kB 00:00 (55/140): libeconf-0.4.0-5.fc38.x86_64.rpm 17 MB/s | 27 kB 00:00 (56/140): libcurl-8.1.0-1.fc39.x86_64.rpm 55 MB/s | 323 kB 00:00 (57/140): libdnf-0.70.1-1.fc39.x86_64.rpm 108 MB/s | 667 kB 00:00 (58/140): libffi-3.4.4-2.fc38.x86_64.rpm 22 MB/s | 38 kB 00:00 (59/140): libevent-2.1.12-8.fc38.x86_64.rpm 56 MB/s | 257 kB 00:00 (60/140): libfsverity-1.4-9.fc38.x86_64.rpm 6.5 MB/s | 19 kB 00:00 (61/140): libgcc-13.1.1-2.fc39.x86_64.rpm 30 MB/s | 106 kB 00:00 (62/140): libgcrypt-1.10.2-1.fc39.x86_64.rpm 132 MB/s | 514 kB 00:00 (63/140): libgpg-error-1.47-1.fc39.x86_64.rpm 71 MB/s | 230 kB 00:00 (64/140): libgomp-13.1.1-2.fc39.x86_64.rpm 44 MB/s | 316 kB 00:00 (65/140): libidn2-2.3.4-2.fc38.x86_64.rpm 36 MB/s | 160 kB 00:00 (66/140): libksba-1.6.3-2.fc38.x86_64.rpm 38 MB/s | 159 kB 00:00 (67/140): libmodulemd-2.15.0-2.fc39.x86_64.rpm 64 MB/s | 231 kB 00:00 (68/140): libnghttp2-1.53.0-1.fc39.x86_64.rpm 22 MB/s | 75 kB 00:00 (69/140): libmount-2.39-2.fc39.x86_64.rpm 32 MB/s | 154 kB 00:00 (70/140): libnsl2-2.0.0-5.fc38.x86_64.rpm 11 MB/s | 30 kB 00:00 (71/140): libpsl-0.21.2-2.fc38.x86_64.rpm 25 MB/s | 65 kB 00:00 (72/140): librepo-1.15.1-2.fc38.x86_64.rpm 35 MB/s | 96 kB 00:00 (73/140): libreport-filesystem-2.17.10-1.fc39.n 5.9 MB/s | 14 kB 00:00 (74/140): libselinux-3.5-1.fc39.x86_64.rpm 32 MB/s | 87 kB 00:00 (75/140): libsemanage-3.5-2.fc39.x86_64.rpm 40 MB/s | 120 kB 00:00 (76/140): libsepol-3.5-1.fc39.x86_64.rpm 85 MB/s | 324 kB 00:00 (77/140): libsigsegv-2.14-4.fc38.x86_64.rpm 12 MB/s | 27 kB 00:00 (78/140): libsmartcols-2.39-2.fc39.x86_64.rpm 23 MB/s | 67 kB 00:00 (79/140): libsolv-0.7.24-2.fc39.x86_64.rpm 91 MB/s | 425 kB 00:00 (80/140): libssh-0.10.5-1.fc39.x86_64.rpm 44 MB/s | 211 kB 00:00 (81/140): libssh-config-0.10.5-1.fc39.noarch.rp 2.3 MB/s | 9.0 kB 00:00 (82/140): libtasn1-4.19.0-2.fc38.x86_64.rpm 17 MB/s | 74 kB 00:00 (83/140): libstdc++-13.1.1-2.fc39.x86_64.rpm 126 MB/s | 860 kB 00:00 (84/140): libtirpc-1.3.3-1.rc1.fc39.x86_64.rpm 17 MB/s | 93 kB 00:00 (85/140): libunistring-1.1-3.fc38.x86_64.rpm 164 MB/s | 545 kB 00:00 (86/140): libuuid-2.39-2.fc39.x86_64.rpm 11 MB/s | 28 kB 00:00 (87/140): libverto-0.3.2-5.fc38.x86_64.rpm 8.3 MB/s | 21 kB 00:00 (88/140): libunistring1.0-1.0-1.fc38.x86_64.rpm 99 MB/s | 539 kB 00:00 (89/140): libxcrypt-4.4.33-7.fc39.x86_64.rpm 37 MB/s | 120 kB 00:00 (90/140): libxml2-2.10.4-1.fc39.x86_64.rpm 157 MB/s | 700 kB 00:00 (91/140): libyaml-0.2.5-9.fc38.x86_64.rpm 15 MB/s | 59 kB 00:00 (92/140): libzstd-1.5.5-1.fc39.x86_64.rpm 69 MB/s | 308 kB 00:00 (93/140): lua-libs-5.4.4-9.fc39.x86_64.rpm 56 MB/s | 133 kB 00:00 (94/140): mpdecimal-2.5.1-6.fc38.x86_64.rpm 58 MB/s | 89 kB 00:00 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00:00 (124/140): python3-systemd-235-2.fc38.x86_64.rp 7.2 MB/s | 108 kB 00:00 (125/140): rpm-build-libs-4.18.1-3.fc39.x86_64. 25 MB/s | 94 kB 00:00 (126/140): rpm-4.18.1-3.fc39.x86_64.rpm 100 MB/s | 571 kB 00:00 (127/140): readline-8.2-3.fc38.x86_64.rpm 31 MB/s | 212 kB 00:00 (128/140): rpm-libs-4.18.1-3.fc39.x86_64.rpm 83 MB/s | 312 kB 00:00 (129/140): rpm-sign-libs-4.18.1-3.fc39.x86_64.r 17 MB/s | 26 kB 00:00 (130/140): rpm-sequoia-1.4.0-3.fc39.x86_64.rpm 138 MB/s | 848 kB 00:00 (131/140): sed-4.8-12.fc38.x86_64.rpm 63 MB/s | 306 kB 00:00 (132/140): setup-2.14.3-3.fc39.noarch.rpm 33 MB/s | 152 kB 00:00 (133/140): sqlite-libs-3.41.2-1.fc39.x86_64.rpm 89 MB/s | 669 kB 00:00 (134/140): systemd-libs-253.4-1.fc39.x86_64.rpm 81 MB/s | 652 kB 00:00 (135/140): shadow-utils-4.13-6.fc39.x86_64.rpm 119 MB/s | 1.3 MB 00:00 (136/140): tpm2-tss-4.0.1-3.fc38.x86_64.rpm 134 MB/s | 675 kB 00:00 (137/140): tzdata-2023c-1.fc39.noarch.rpm 110 MB/s | 718 kB 00:00 (138/140): xz-libs-5.4.3-1.fc39.x86_64.rpm 20 MB/s | 108 kB 00:00 (139/140): zchunk-libs-1.3.1-1.fc39.x86_64.rpm 24 MB/s | 52 kB 00:00 (140/140): zlib-1.2.13-3.fc38.x86_64.rpm 47 MB/s | 95 kB 00:00 -------------------------------------------------------------------------------- Total 134 MB/s | 58 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-2.fc39.x86_64 1/140 Running scriptlet: libgcc-13.1.1-2.fc39.x86_64 1/140 Installing : tzdata-2023c-1.fc39.noarch 2/140 Installing : crypto-policies-20230420-1.git3d08ae7.fc39.noarc 3/140 Running scriptlet: crypto-policies-20230420-1.git3d08ae7.fc39.noarc 3/140 Installing : fedora-release-identity-basic-39-0.11.noarch 4/140 Installing : python-setuptools-wheel-67.7.2-2.fc39.noarch 5/140 Installing : publicsuffix-list-dafsa-20230318-1.fc39.noarch 6/140 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 7/140 Installing : ncurses-base-6.4-3.20230114.fc38.noarch 8/140 Installing : libssh-config-0.10.5-1.fc39.noarch 9/140 Installing : libreport-filesystem-2.17.10-1.fc39.noarch 10/140 Installing : dnf-data-4.15.1-1.fc39.noarch 11/140 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : fedora-gpg-keys-39-0.1.noarch 12/140 Installing : 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libarchive-3.6.1-5.fc39.x86_64 120/140 Installing : libevent-2.1.12-8.fc38.x86_64 121/140 Installing : openldap-2.6.4-2.fc39.x86_64 122/140 Installing : libcurl-8.1.0-1.fc39.x86_64 123/140 Installing : gnupg2-2.4.1-1.fc39.x86_64 124/140 Installing : gpgme-1.17.1-5.fc39.x86_64 125/140 Installing : librepo-1.15.1-2.fc38.x86_64 126/140 Installing : libdnf-0.70.1-1.fc39.x86_64 127/140 Installing : python3-libdnf-0.70.1-1.fc39.x86_64 128/140 Installing : python3-hawkey-0.70.1-1.fc39.x86_64 129/140 Installing : python3-gpg-1.17.1-5.fc39.x86_64 130/140 Installing : curl-8.1.0-1.fc39.x86_64 131/140 Running scriptlet: tpm2-tss-4.0.1-3.fc38.x86_64 132/140 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.1-3.fc38.x86_64 132/140 Installing : ima-evm-utils-1.4-7.fc38.x86_64 133/140 Installing : rpm-sign-libs-4.18.1-3.fc39.x86_64 134/140 Installing : python3-rpm-4.18.1-3.fc39.x86_64 135/140 Installing : python3-dnf-4.15.1-1.fc39.noarch 136/140 Installing : python3-dnf-plugins-core-4.4.1-1.fc39.noarch 137/140 Installing : dnf-plugins-core-4.4.1-1.fc39.noarch 138/140 Installing : dnf-4.15.1-1.fc39.noarch 139/140 Running scriptlet: dnf-4.15.1-1.fc39.noarch 139/140 Running scriptlet: rpm-4.18.1-3.fc39.x86_64 140/140 Installing : rpm-4.18.1-3.fc39.x86_64 140/140 Running scriptlet: filesystem-3.18-4.fc39.x86_64 140/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 140/140 Running scriptlet: rpm-4.18.1-3.fc39.x86_64 140/140 Verifying : alternatives-1.24-1.fc39.x86_64 1/140 Verifying : audit-libs-3.1.1-1.fc39.x86_64 2/140 Verifying : basesystem-11-15.fc38.noarch 3/140 Verifying : bash-5.2.15-3.fc38.x86_64 4/140 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 5/140 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/140 Verifying : coreutils-9.3-1.fc39.x86_64 7/140 Verifying : coreutils-common-9.3-1.fc39.x86_64 8/140 Verifying : crypto-policies-20230420-1.git3d08ae7.fc39.noarc 9/140 Verifying : curl-8.1.0-1.fc39.x86_64 10/140 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 11/140 Verifying : dbus-libs-1:1.14.6-1.fc38.x86_64 12/140 Verifying : dnf-4.15.1-1.fc39.noarch 13/140 Verifying : dnf-data-4.15.1-1.fc39.noarch 14/140 Verifying : dnf-plugins-core-4.4.1-1.fc39.noarch 15/140 Verifying : elfutils-default-yama-scope-0.189-2.fc39.noarch 16/140 Verifying : elfutils-libelf-0.189-2.fc39.x86_64 17/140 Verifying : elfutils-libs-0.189-2.fc39.x86_64 18/140 Verifying : expat-2.5.0-2.fc38.x86_64 19/140 Verifying : fedora-gpg-keys-39-0.1.noarch 20/140 Verifying : fedora-release-39-0.11.noarch 21/140 Verifying : fedora-release-common-39-0.11.noarch 22/140 Verifying : fedora-release-identity-basic-39-0.11.noarch 23/140 Verifying : fedora-repos-39-0.1.noarch 24/140 Verifying : fedora-repos-rawhide-39-0.1.noarch 25/140 Verifying : file-libs-5.44-3.fc39.x86_64 26/140 Verifying : filesystem-3.18-4.fc39.x86_64 27/140 Verifying : findutils-1:4.9.0-4.fc39.x86_64 28/140 Verifying : gawk-5.1.1-5.fc38.x86_64 29/140 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 30/140 Verifying : glib2-2.76.2-1.fc39.x86_64 31/140 Verifying : glibc-2.37.9000-10.fc39.x86_64 32/140 Verifying : glibc-common-2.37.9000-10.fc39.x86_64 33/140 Verifying : glibc-minimal-langpack-2.37.9000-10.fc39.x86_64 34/140 Verifying : gmp-1:6.2.1-4.fc38.x86_64 35/140 Verifying : gnupg2-2.4.1-1.fc39.x86_64 36/140 Verifying : gnutls-3.8.0-3.fc39.x86_64 37/140 Verifying : gpgme-1.17.1-5.fc39.x86_64 38/140 Verifying : grep-3.9-1.fc39.x86_64 39/140 Verifying : ima-evm-utils-1.4-7.fc38.x86_64 40/140 Verifying : json-c-0.16-4.fc38.x86_64 41/140 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 42/140 Verifying : krb5-libs-1.20.1-9.fc39.x86_64 43/140 Verifying : libacl-2.3.1-7.fc39.x86_64 44/140 Verifying : libarchive-3.6.1-5.fc39.x86_64 45/140 Verifying : libassuan-2.5.5-6.fc38.x86_64 46/140 Verifying : libattr-2.5.1-7.fc39.x86_64 47/140 Verifying : libb2-0.98.1-8.fc38.x86_64 48/140 Verifying : libblkid-2.39-2.fc39.x86_64 49/140 Verifying : libbrotli-1.0.9-11.fc38.x86_64 50/140 Verifying : libcap-2.48-6.fc38.x86_64 51/140 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 52/140 Verifying : libcom_err-1.46.5-4.fc38.x86_64 53/140 Verifying : libcomps-0.1.19-1.fc39.x86_64 54/140 Verifying : libcurl-8.1.0-1.fc39.x86_64 55/140 Verifying : libdnf-0.70.1-1.fc39.x86_64 56/140 Verifying : libeconf-0.4.0-5.fc38.x86_64 57/140 Verifying : libevent-2.1.12-8.fc38.x86_64 58/140 Verifying : libffi-3.4.4-2.fc38.x86_64 59/140 Verifying : libfsverity-1.4-9.fc38.x86_64 60/140 Verifying : libgcc-13.1.1-2.fc39.x86_64 61/140 Verifying : libgcrypt-1.10.2-1.fc39.x86_64 62/140 Verifying : libgomp-13.1.1-2.fc39.x86_64 63/140 Verifying : libgpg-error-1.47-1.fc39.x86_64 64/140 Verifying : libidn2-2.3.4-2.fc38.x86_64 65/140 Verifying : libksba-1.6.3-2.fc38.x86_64 66/140 Verifying : libmodulemd-2.15.0-2.fc39.x86_64 67/140 Verifying : libmount-2.39-2.fc39.x86_64 68/140 Verifying : libnghttp2-1.53.0-1.fc39.x86_64 69/140 Verifying : libnsl2-2.0.0-5.fc38.x86_64 70/140 Verifying : libpsl-0.21.2-2.fc38.x86_64 71/140 Verifying : librepo-1.15.1-2.fc38.x86_64 72/140 Verifying : libreport-filesystem-2.17.10-1.fc39.noarch 73/140 Verifying : libselinux-3.5-1.fc39.x86_64 74/140 Verifying : libsemanage-3.5-2.fc39.x86_64 75/140 Verifying : libsepol-3.5-1.fc39.x86_64 76/140 Verifying : libsigsegv-2.14-4.fc38.x86_64 77/140 Verifying : libsmartcols-2.39-2.fc39.x86_64 78/140 Verifying : libsolv-0.7.24-2.fc39.x86_64 79/140 Verifying : libssh-0.10.5-1.fc39.x86_64 80/140 Verifying : libssh-config-0.10.5-1.fc39.noarch 81/140 Verifying : libstdc++-13.1.1-2.fc39.x86_64 82/140 Verifying : libtasn1-4.19.0-2.fc38.x86_64 83/140 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 84/140 Verifying : libunistring-1.1-3.fc38.x86_64 85/140 Verifying : libunistring1.0-1.0-1.fc38.x86_64 86/140 Verifying : libuuid-2.39-2.fc39.x86_64 87/140 Verifying : libverto-0.3.2-5.fc38.x86_64 88/140 Verifying : libxcrypt-4.4.33-7.fc39.x86_64 89/140 Verifying : libxml2-2.10.4-1.fc39.x86_64 90/140 Verifying : libyaml-0.2.5-9.fc38.x86_64 91/140 Verifying : libzstd-1.5.5-1.fc39.x86_64 92/140 Verifying : lua-libs-5.4.4-9.fc39.x86_64 93/140 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 94/140 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 95/140 Verifying : mpfr-4.1.1-3.fc38.x86_64 96/140 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 97/140 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 98/140 Verifying : nettle-3.8-3.fc38.x86_64 99/140 Verifying : npth-1.6-13.fc39.x86_64 100/140 Verifying : openldap-2.6.4-2.fc39.x86_64 101/140 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 102/140 Verifying : p11-kit-0.24.1-6.fc38.x86_64 103/140 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 104/140 Verifying : pcre2-10.42-1.fc38.1.x86_64 105/140 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 106/140 Verifying : popt-1.19-2.fc38.x86_64 107/140 Verifying : publicsuffix-list-dafsa-20230318-1.fc39.noarch 108/140 Verifying : python-pip-wheel-23.0.1-2.fc39.noarch 109/140 Verifying : python-setuptools-wheel-67.7.2-2.fc39.noarch 110/140 Verifying : python3-3.11.3-1.fc39.x86_64 111/140 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 112/140 Verifying : python3-dbus-1.3.2-2.fc38.x86_64 113/140 Verifying : python3-distro-1.8.0-3.fc39.noarch 114/140 Verifying : python3-dnf-4.15.1-1.fc39.noarch 115/140 Verifying : python3-dnf-plugins-core-4.4.1-1.fc39.noarch 116/140 Verifying : python3-gpg-1.17.1-5.fc39.x86_64 117/140 Verifying : python3-hawkey-0.70.1-1.fc39.x86_64 118/140 Verifying : python3-libcomps-0.1.19-1.fc39.x86_64 119/140 Verifying : python3-libdnf-0.70.1-1.fc39.x86_64 120/140 Verifying : python3-libs-3.11.3-1.fc39.x86_64 121/140 Verifying : python3-rpm-4.18.1-3.fc39.x86_64 122/140 Verifying : python3-six-1.16.0-9.fc38.noarch 123/140 Verifying : python3-systemd-235-2.fc38.x86_64 124/140 Verifying : readline-8.2-3.fc38.x86_64 125/140 Verifying : rpm-4.18.1-3.fc39.x86_64 126/140 Verifying : rpm-build-libs-4.18.1-3.fc39.x86_64 127/140 Verifying : rpm-libs-4.18.1-3.fc39.x86_64 128/140 Verifying : rpm-sequoia-1.4.0-3.fc39.x86_64 129/140 Verifying : rpm-sign-libs-4.18.1-3.fc39.x86_64 130/140 Verifying : sed-4.8-12.fc38.x86_64 131/140 Verifying : setup-2.14.3-3.fc39.noarch 132/140 Verifying : shadow-utils-2:4.13-6.fc39.x86_64 133/140 Verifying : sqlite-libs-3.41.2-1.fc39.x86_64 134/140 Verifying : systemd-libs-253.4-1.fc39.x86_64 135/140 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 136/140 Verifying : tzdata-2023c-1.fc39.noarch 137/140 Verifying : xz-libs-5.4.3-1.fc39.x86_64 138/140 Verifying : zchunk-libs-1.3.1-1.fc39.x86_64 139/140 Verifying : zlib-1.2.13-3.fc38.x86_64 140/140 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 audit-libs-3.1.1-1.fc39.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 crypto-policies-20230420-1.git3d08ae7.fc39.noarch curl-8.1.0-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 dbus-libs-1:1.14.6-1.fc38.x86_64 dnf-4.15.1-1.fc39.noarch dnf-data-4.15.1-1.fc39.noarch dnf-plugins-core-4.4.1-1.fc39.noarch elfutils-default-yama-scope-0.189-2.fc39.noarch elfutils-libelf-0.189-2.fc39.x86_64 elfutils-libs-0.189-2.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.11.noarch fedora-release-common-39-0.11.noarch fedora-release-identity-basic-39-0.11.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 gawk-5.1.1-5.fc38.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.76.2-1.fc39.x86_64 glibc-2.37.9000-10.fc39.x86_64 glibc-common-2.37.9000-10.fc39.x86_64 glibc-minimal-langpack-2.37.9000-10.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.1-1.fc39.x86_64 gnutls-3.8.0-3.fc39.x86_64 gpgme-1.17.1-5.fc39.x86_64 grep-3.9-1.fc39.x86_64 ima-evm-utils-1.4-7.fc38.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.5-6.fc38.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.39-2.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcomps-0.1.19-1.fc39.x86_64 libcurl-8.1.0-1.fc39.x86_64 libdnf-0.70.1-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-2.fc38.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-2.fc39.x86_64 libgcrypt-1.10.2-1.fc39.x86_64 libgomp-13.1.1-2.fc39.x86_64 libgpg-error-1.47-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.3-2.fc38.x86_64 libmodulemd-2.15.0-2.fc39.x86_64 libmount-2.39-2.fc39.x86_64 libnghttp2-1.53.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-2.fc38.x86_64 librepo-1.15.1-2.fc38.x86_64 libreport-filesystem-2.17.10-1.fc39.noarch libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39-2.fc39.x86_64 libsolv-0.7.24-2.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-2.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.39-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 npth-1.6-13.fc39.x86_64 openldap-2.6.4-2.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc39.noarch python-pip-wheel-23.0.1-2.fc39.noarch python-setuptools-wheel-67.7.2-2.fc39.noarch python3-3.11.3-1.fc39.x86_64 python3-dateutil-1:2.8.2-6.fc39.noarch python3-dbus-1.3.2-2.fc38.x86_64 python3-distro-1.8.0-3.fc39.noarch python3-dnf-4.15.1-1.fc39.noarch python3-dnf-plugins-core-4.4.1-1.fc39.noarch python3-gpg-1.17.1-5.fc39.x86_64 python3-hawkey-0.70.1-1.fc39.x86_64 python3-libcomps-0.1.19-1.fc39.x86_64 python3-libdnf-0.70.1-1.fc39.x86_64 python3-libs-3.11.3-1.fc39.x86_64 python3-rpm-4.18.1-3.fc39.x86_64 python3-six-1.16.0-9.fc38.noarch python3-systemd-235-2.fc38.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.1-3.fc39.x86_64 rpm-build-libs-4.18.1-3.fc39.x86_64 rpm-libs-4.18.1-3.fc39.x86_64 rpm-sequoia-1.4.0-3.fc39.x86_64 rpm-sign-libs-4.18.1-3.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-6.fc39.x86_64 sqlite-libs-3.41.2-1.fc39.x86_64 systemd-libs-253.4-1.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 zchunk-libs-1.3.1-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 38 kB/s | 1.5 kB 00:00 Copr repository 37 MB/s | 3.8 MB 00:00 fedora 516 kB/s | 20 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M cpio x86_64 2.13-14.fc38 fedora 276 k diffutils x86_64 3.9-4.fc39 fedora 397 k fedora-release-common noarch 39-0.11 fedora 22 k findutils x86_64 1:4.9.0-4.fc39 fedora 491 k gawk x86_64 5.1.1-5.fc38 fedora 1.0 M glibc-minimal-langpack x86_64 2.37.9000-10.fc39 fedora 53 k grep x86_64 3.9-1.fc39 fedora 295 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.3-1.fc39 fedora 184 k patch x86_64 2.7.6-21.fc39 fedora 126 k redhat-rpm-config noarch 254-1.fc39 fedora 83 k rpm-build x86_64 4.18.1-3.fc39 fedora 77 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-6.fc39 fedora 1.3 M tar x86_64 2:1.34-8.fc39 fedora 888 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.39-2.fc39 fedora 1.2 M which x86_64 2.21-39.fc39 fedora 42 k xz x86_64 5.4.3-1.fc39 fedora 555 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-10.fc39 fedora 21 k audit-libs x86_64 3.1.1-1.fc39 fedora 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-15.fc38 fedora 7.0 k binutils x86_64 2.40-7.fc39 fedora 5.6 M binutils-gold x86_64 2.40-7.fc39 fedora 795 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M cracklib x86_64 2.9.7-31.fc38 fedora 92 k crypto-policies noarch 20230420-1.git3d08ae7.fc39 fedora 94 k curl x86_64 8.1.0-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k debugedit x86_64 5.0-7.fc38 fedora 78 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-7.fc38 fedora 22 k elfutils x86_64 0.189-2.fc39 fedora 536 k elfutils-debuginfod-client x86_64 0.189-2.fc39 fedora 39 k elfutils-default-yama-scope noarch 0.189-2.fc39 fedora 15 k elfutils-libelf x86_64 0.189-2.fc39 fedora 196 k elfutils-libs x86_64 0.189-2.fc39 fedora 260 k fedora-gpg-keys noarch 39-0.1 fedora 126 k fedora-release noarch 39-0.11 fedora 12 k fedora-release-identity-basic noarch 39-0.11 fedora 13 k fedora-repos noarch 39-0.1 fedora 9.4 k fedora-repos-rawhide noarch 39-0.1 fedora 9.0 k file x86_64 5.44-3.fc39 fedora 50 k file-libs x86_64 5.44-3.fc39 fedora 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.1-5.fc39 fedora 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37.9000-10.fc39 fedora 2.1 M glibc-common x86_64 2.37.9000-10.fc39 fedora 331 k glibc-gconv-extra x86_64 2.37.9000-10.fc39 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-3.fc39 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-18.fc39 fedora 9.4 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.20.1-9.fc39 fedora 727 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libblkid x86_64 2.39-2.fc39 fedora 116 k libbrotli x86_64 1.0.9-11.fc38 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-5.fc38 fedora 32 k libcom_err x86_64 1.46.5-4.fc38 fedora 26 k libcurl x86_64 8.1.0-1.fc39 fedora 323 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.39-2.fc39 fedora 162 k libffi x86_64 3.4.4-2.fc38 fedora 38 k libgcc x86_64 13.1.1-2.fc39 fedora 106 k libgomp x86_64 13.1.1-2.fc39 fedora 316 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.39-2.fc39 fedora 154 k libnghttp2 x86_64 1.53.0-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.9.4-2.fc39 fedora 38 k libpsl x86_64 0.21.2-2.fc38 fedora 65 k libpwquality x86_64 1.4.5-3.fc38 fedora 119 k libselinux x86_64 3.5-1.fc39 fedora 87 k libsemanage x86_64 3.5-2.fc39 fedora 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39-2.fc39 fedora 67 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-2.fc39 fedora 860 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-9.fc39 fedora 26 k libuuid x86_64 2.39-2.fc39 fedora 28 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.33-7.fc39 fedora 120 k libxml2 x86_64 2.10.4-1.fc39 fedora 700 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpfr x86_64 4.1.1-3.fc38 fedora 600 k ncurses-base noarch 6.4-3.20230114.fc38 fedora 87 k ncurses-libs x86_64 6.4-3.20230114.fc38 fedora 333 k ocaml-srpm-macros noarch 7-3.fc38 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-2.fc39 fedora 255 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-8.fc39 fedora 11 k pam x86_64 1.5.2-19.fc39 fedora 532 k pam-libs x86_64 1.5.2-19.fc39 fedora 57 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-48.fc38 fedora 8.4 k pkgconf x86_64 1.9.4-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.4-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.4-2.fc39 fedora 9.5 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230318-1.fc39 fedora 60 k pyproject-srpm-macros noarch 1.8.0-1.fc39 fedora 15 k python-srpm-macros noarch 3.11-10.fc39 fedora 26 k qt5-srpm-macros noarch 5.15.9-1.fc39 fedora 8.1 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.1-3.fc39 fedora 571 k rpm-build-libs x86_64 4.18.1-3.fc39 fedora 94 k rpm-libs x86_64 4.18.1-3.fc39 fedora 312 k rpm-sequoia x86_64 1.4.0-3.fc39 fedora 848 k rpmautospec-rpm-macros noarch 0.3.5-1.fc38 fedora 9.3 k rust-srpm-macros noarch 24-2.fc39 fedora 12 k setup noarch 2.14.3-3.fc39 fedora 152 k sqlite-libs x86_64 3.41.2-1.fc39 fedora 669 k systemd-libs x86_64 253.4-1.fc39 fedora 652 k tzdata noarch 2023c-1.fc39 fedora 718 k util-linux-core x86_64 2.39-2.fc39 fedora 489 k xxhash-libs x86_64 0.8.1-4.fc38 fedora 40 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 152 Packages Total size: 52 M Installed size: 179 M Downloading Packages: [SKIPPED] alternatives-1.24-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-10.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.1-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] authselect-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] basesystem-11-15.fc38.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] binutils-2.40-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] binutils-gold-2.40-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-13.fc38.x86_64.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60-2.fc38.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] coreutils-common-9.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cpio-2.13-14.fc38.x86_64.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-31.fc38.x86_64.rpm: Already downloaded [SKIPPED] crypto-policies-20230420-1.git3d08ae7.fc39.noarch.rpm: Already downloaded [SKIPPED] curl-8.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] debugedit-5.0-7.fc38.x86_64.rpm: Already downloaded [SKIPPED] diffutils-3.9-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] dwz-0.15-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] ed-1.19-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-7.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.189-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.189-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.189-2.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-39-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-39-0.11.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-39-0.11.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-39-0.11.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-39-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-39-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.44-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] file-libs-5.44-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] filesystem-3.18-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] findutils-4.9.0-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-7.fc38.noarch.rpm: Already downloaded [SKIPPED] gawk-5.1.1-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] gdb-minimal-13.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.6.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] glibc-2.37.9000-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-common-2.37.9000-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.37.9000-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.37.9000-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] gmp-6.2.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-6-2.fc38.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-3.fc39.noarch.rpm: Already downloaded [SKIPPED] grep-3.9-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] gzip-1.12-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] info-7.0.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] jansson-2.13.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-18.fc39.noarch.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libacl-2.3.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-5.fc39.x86_64.rpm: Already downloaded [SKIPPED] libattr-2.5.1-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libblkid-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-2.48-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libcurl-8.1.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libdb-5.3.28-55.fc38.x86_64.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libevent-2.1.12-8.fc38.x86_64.rpm: Already downloaded [SKIPPED] libfdisk-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libffi-3.4.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libgcc-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libgomp-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libmount-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libnghttp2-1.53.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpkgconf-1.9.4-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libpsl-0.21.2-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] libselinux-3.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsemanage-3.5-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsepol-3.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] libsmartcols-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libssh-0.10.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libssh-config-0.10.5-1.fc39.noarch.rpm: Already downloaded [SKIPPED] libstdc++-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-1.rc1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libunistring1.0-1.0-1.fc38.x86_64.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] libuuid-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libverto-0.3.2-5.fc38.x86_64.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-7.fc39.x86_64.rpm: Already downloaded [SKIPPED] libxml2-2.10.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libzstd-1.5.5-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-9.fc39.x86_64.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-8.fc38.noarch.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.4-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] ncurses-base-6.4-3.20230114.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.4-3.20230114.fc38.x86_64.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-3.fc38.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-13.fc38.noarch.rpm: Already downloaded [SKIPPED] openldap-2.6.4-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.8-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-6.fc38.x86_64.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-8.fc39.noarch.rpm: Already downloaded [SKIPPED] pam-1.5.2-19.fc39.x86_64.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-19.fc39.x86_64.rpm: Already downloaded [SKIPPED] patch-2.7.6-21.fc39.x86_64.rpm: Already downloaded [SKIPPED] pcre2-10.42-1.fc38.1.x86_64.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.42-1.fc38.1.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-48.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.9.4-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.9.4-2.fc39.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.9.4-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] popt-1.19-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20230318-1.fc39.noarch.rpm: Already downloaded [SKIPPED] pyproject-srpm-macros-1.8.0-1.fc39.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-10.fc39.noarch.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.9-1.fc39.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] redhat-rpm-config-254-1.fc39.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-4.18.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.4.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.5-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-24-2.fc39.noarch.rpm: Already downloaded [SKIPPED] sed-4.8-12.fc38.x86_64.rpm: Already downloaded [SKIPPED] setup-2.14.3-3.fc39.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-6.fc39.x86_64.rpm: Already downloaded [SKIPPED] sqlite-libs-3.41.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] systemd-libs-253.4-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] tar-1.34-8.fc39.x86_64.rpm: Already downloaded [SKIPPED] tzdata-2023c-1.fc39.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-60.fc38.x86_64.rpm: Already downloaded [SKIPPED] util-linux-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] util-linux-core-2.39-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] which-2.21-39.fc39.x86_64.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-4.fc38.x86_64.rpm: Already downloaded [SKIPPED] xz-5.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] xz-libs-5.4.3-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] zip-3.0-36.fc38.x86_64.rpm: Already downloaded [SKIPPED] zlib-1.2.13-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] zstd-1.5.5-1.fc39.x86_64.rpm: Already downloaded fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-2.fc39.x86_64 1/152 Running scriptlet: libgcc-13.1.1-2.fc39.x86_64 1/152 Installing : crypto-policies-20230420-1.git3d08ae7.fc39.noarc 2/152 Running scriptlet: crypto-policies-20230420-1.git3d08ae7.fc39.noarc 2/152 Installing : tzdata-2023c-1.fc39.noarch 3/152 Installing : fedora-release-identity-basic-39-0.11.noarch 4/152 Installing : rust-srpm-macros-24-2.fc39.noarch 5/152 Installing : qt5-srpm-macros-5.15.9-1.fc39.noarch 6/152 Installing : pyproject-srpm-macros-1.8.0-1.fc39.noarch 7/152 Installing : publicsuffix-list-dafsa-20230318-1.fc39.noarch 8/152 Installing : pkgconf-m4-1.9.4-2.fc39.noarch 9/152 Installing : perl-srpm-macros-1-48.fc38.noarch 10/152 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 11/152 Installing : package-notes-srpm-macros-0.5-8.fc39.noarch 12/152 Installing : openblas-srpm-macros-2-13.fc38.noarch 13/152 Installing : ocaml-srpm-macros-7-3.fc38.noarch 14/152 Installing : ncurses-base-6.4-3.20230114.fc38.noarch 15/152 Installing : libssh-config-0.10.5-1.fc39.noarch 16/152 Installing : kernel-srpm-macros-1.0-18.fc39.noarch 17/152 Installing : gnat-srpm-macros-6-2.fc38.noarch 18/152 Installing : ghc-srpm-macros-1.6.1-1.fc38.noarch 19/152 Installing : fpc-srpm-macros-1.3-7.fc38.noarch 20/152 Installing : fedora-gpg-keys-39-0.1.noarch 21/152 Installing : fedora-release-39-0.11.noarch 22/152 Installing : fedora-release-common-39-0.11.noarch 23/152 Installing : fedora-repos-rawhide-39-0.1.noarch 24/152 Installing : fedora-repos-39-0.1.noarch 25/152 Installing : setup-2.14.3-3.fc39.noarch 26/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-3.fc39.noarch 26/152 Installing : filesystem-3.18-4.fc39.x86_64 27/152 Installing : basesystem-11-15.fc38.noarch 28/152 Installing : glibc-gconv-extra-2.37.9000-10.fc39.x86_64 29/152 Running scriptlet: glibc-gconv-extra-2.37.9000-10.fc39.x86_64 29/152 Installing : glibc-minimal-langpack-2.37.9000-10.fc39.x86_64 30/152 Installing : glibc-common-2.37.9000-10.fc39.x86_64 31/152 Running scriptlet: glibc-2.37.9000-10.fc39.x86_64 32/152 Installing : glibc-2.37.9000-10.fc39.x86_64 32/152 Running scriptlet: glibc-2.37.9000-10.fc39.x86_64 32/152 Installing : ncurses-libs-6.4-3.20230114.fc38.x86_64 33/152 Installing : bash-5.2.15-3.fc38.x86_64 34/152 Running scriptlet: bash-5.2.15-3.fc38.x86_64 34/152 Installing : zlib-1.2.13-3.fc38.x86_64 35/152 Installing : xz-libs-5.4.3-1.fc39.x86_64 36/152 Installing : bzip2-libs-1.0.8-13.fc38.x86_64 37/152 Installing : libzstd-1.5.5-1.fc39.x86_64 38/152 Installing : elfutils-libelf-0.189-2.fc39.x86_64 39/152 Installing : libstdc++-13.1.1-2.fc39.x86_64 40/152 Installing : libuuid-2.39-2.fc39.x86_64 41/152 Installing : popt-1.19-2.fc38.x86_64 42/152 Installing : libblkid-2.39-2.fc39.x86_64 43/152 Installing : readline-8.2-3.fc38.x86_64 44/152 Installing : gmp-1:6.2.1-4.fc38.x86_64 45/152 Installing : libattr-2.5.1-7.fc39.x86_64 46/152 Installing : libacl-2.3.1-7.fc39.x86_64 47/152 Installing : libcap-2.48-6.fc38.x86_64 48/152 Installing : libxcrypt-4.4.33-7.fc39.x86_64 49/152 Installing : libeconf-0.4.0-5.fc38.x86_64 50/152 Installing : lz4-libs-1.9.4-3.fc39.x86_64 51/152 Installing : systemd-libs-253.4-1.fc39.x86_64 52/152 Installing : mpfr-4.1.1-3.fc38.x86_64 53/152 Installing : dwz-0.15-2.fc38.x86_64 54/152 Installing : unzip-6.0-60.fc38.x86_64 55/152 Installing : file-libs-5.44-3.fc39.x86_64 56/152 Installing : file-5.44-3.fc39.x86_64 57/152 Installing : sqlite-libs-3.41.2-1.fc39.x86_64 58/152 Installing : alternatives-1.24-1.fc39.x86_64 59/152 Installing : jansson-2.13.1-6.fc38.x86_64 60/152 Installing : libcap-ng-0.8.3-5.fc38.x86_64 61/152 Installing : audit-libs-3.1.1-1.fc39.x86_64 62/152 Installing : pam-libs-1.5.2-19.fc39.x86_64 63/152 Installing : libcom_err-1.46.5-4.fc38.x86_64 64/152 Installing : libsepol-3.5-1.fc39.x86_64 65/152 Installing : libsmartcols-2.39-2.fc39.x86_64 66/152 Installing : libunistring1.0-1.0-1.fc38.x86_64 67/152 Installing : libidn2-2.3.4-2.fc38.x86_64 68/152 Installing : lua-libs-5.4.4-9.fc39.x86_64 69/152 Installing : pcre2-10.42-1.fc38.1.x86_64 70/152 Installing : libselinux-3.5-1.fc39.x86_64 71/152 Installing : sed-4.8-12.fc38.x86_64 72/152 Installing : grep-3.9-1.fc39.x86_64 73/152 Installing : findutils-1:4.9.0-4.fc39.x86_64 74/152 Installing : xz-5.4.3-1.fc39.x86_64 75/152 Installing : libmount-2.39-2.fc39.x86_64 76/152 Installing : util-linux-core-2.39-2.fc39.x86_64 77/152 Installing : libsemanage-3.5-2.fc39.x86_64 78/152 Installing : shadow-utils-2:4.13-6.fc39.x86_64 79/152 Running scriptlet: libutempter-1.2.1-9.fc39.x86_64 80/152 Installing : libutempter-1.2.1-9.fc39.x86_64 80/152 Installing : tar-2:1.34-8.fc39.x86_64 81/152 Installing : libpsl-0.21.2-2.fc38.x86_64 82/152 Installing : zip-3.0-36.fc38.x86_64 83/152 Installing : zstd-1.5.5-1.fc39.x86_64 84/152 Installing : libfdisk-2.39-2.fc39.x86_64 85/152 Installing : bzip2-1.0.8-13.fc38.x86_64 86/152 Installing : libxml2-2.10.4-1.fc39.x86_64 87/152 Installing : ed-1.19-2.fc38.x86_64 88/152 Installing : patch-2.7.6-21.fc39.x86_64 89/152 Installing : elfutils-default-yama-scope-0.189-2.fc39.noarch 90/152 Running scriptlet: elfutils-default-yama-scope-0.189-2.fc39.noarch 90/152 Installing : cpio-2.13-14.fc38.x86_64 91/152 Installing : diffutils-3.9-4.fc39.x86_64 92/152 Installing : gdbm-libs-1:1.23-3.fc38.x86_64 93/152 Installing : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 94/152 Installing : keyutils-libs-1.6.1-6.fc38.x86_64 95/152 Installing : libbrotli-1.0.9-11.fc38.x86_64 96/152 Installing : libdb-5.3.28-55.fc38.x86_64 97/152 Installing : libffi-3.4.4-2.fc38.x86_64 98/152 Installing : p11-kit-0.24.1-6.fc38.x86_64 99/152 Installing : libgomp-13.1.1-2.fc39.x86_64 100/152 Installing : libnghttp2-1.53.0-1.fc39.x86_64 101/152 Installing : libpkgconf-1.9.4-2.fc39.x86_64 102/152 Installing : pkgconf-1.9.4-2.fc39.x86_64 103/152 Installing : pkgconf-pkg-config-1.9.4-2.fc39.x86_64 104/152 Installing : libsigsegv-2.14-4.fc38.x86_64 105/152 Installing : gawk-5.1.1-5.fc38.x86_64 106/152 Installing : libtasn1-4.19.0-2.fc38.x86_64 107/152 Installing : p11-kit-trust-0.24.1-6.fc38.x86_64 108/152 Running scriptlet: p11-kit-trust-0.24.1-6.fc38.x86_64 108/152 Installing : libverto-0.3.2-5.fc38.x86_64 109/152 Installing : xxhash-libs-0.8.1-4.fc38.x86_64 110/152 Installing : coreutils-common-9.3-1.fc39.x86_64 111/152 Installing : openssl-libs-1:3.0.8-2.fc39.x86_64 112/152 Installing : coreutils-9.3-1.fc39.x86_64 113/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 114/152 Installing : ca-certificates-2023.2.60-2.fc38.noarch 114/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 114/152 Installing : krb5-libs-1.20.1-9.fc39.x86_64 115/152 Installing : libtirpc-1.3.3-1.rc1.fc39.x86_64 116/152 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 117/152 Installing : authselect-libs-1.4.2-2.fc38.x86_64 117/152 Installing : gzip-1.12-3.fc38.x86_64 118/152 Installing : rpm-sequoia-1.4.0-3.fc39.x86_64 119/152 Installing : rpm-libs-4.18.1-3.fc39.x86_64 120/152 Installing : cracklib-2.9.7-31.fc38.x86_64 121/152 Installing : libpwquality-1.4.5-3.fc38.x86_64 122/152 Installing : authselect-1.4.2-2.fc38.x86_64 123/152 Installing : libnsl2-2.0.0-5.fc38.x86_64 124/152 Installing : pam-1.5.2-19.fc39.x86_64 125/152 Installing : libssh-0.10.5-1.fc39.x86_64 126/152 Installing : libarchive-3.6.1-5.fc39.x86_64 127/152 Installing : libevent-2.1.12-8.fc38.x86_64 128/152 Installing : openldap-2.6.4-2.fc39.x86_64 129/152 Installing : libcurl-8.1.0-1.fc39.x86_64 130/152 Installing : elfutils-libs-0.189-2.fc39.x86_64 131/152 Installing : elfutils-debuginfod-client-0.189-2.fc39.x86_64 132/152 Installing : binutils-gold-2.40-7.fc39.x86_64 133/152 Installing : binutils-2.40-7.fc39.x86_64 134/152 Running scriptlet: binutils-2.40-7.fc39.x86_64 134/152 Installing : elfutils-0.189-2.fc39.x86_64 135/152 Installing : gdb-minimal-13.1-5.fc39.x86_64 136/152 Installing : debugedit-5.0-7.fc38.x86_64 137/152 Installing : rpm-build-libs-4.18.1-3.fc39.x86_64 138/152 Installing : curl-8.1.0-1.fc39.x86_64 139/152 Running scriptlet: rpm-4.18.1-3.fc39.x86_64 140/152 Installing : rpm-4.18.1-3.fc39.x86_64 140/152 Installing : efi-srpm-macros-5-7.fc38.noarch 141/152 Installing : lua-srpm-macros-1-8.fc38.noarch 142/152 Installing : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 143/152 Installing : ansible-srpm-macros-1-10.fc39.noarch 144/152 Installing : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 145/152 Installing : go-srpm-macros-3.2.0-3.fc39.noarch 146/152 Installing : python-srpm-macros-3.11-10.fc39.noarch 147/152 Installing : redhat-rpm-config-254-1.fc39.noarch 148/152 Installing : rpm-build-4.18.1-3.fc39.x86_64 149/152 Installing : util-linux-2.39-2.fc39.x86_64 150/152 Installing : which-2.21-39.fc39.x86_64 151/152 Installing : info-7.0.3-1.fc39.x86_64 152/152 Running scriptlet: filesystem-3.18-4.fc39.x86_64 152/152 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 152/152 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 152/152 Running scriptlet: rpm-4.18.1-3.fc39.x86_64 152/152 Running scriptlet: info-7.0.3-1.fc39.x86_64 152/152 Verifying : alternatives-1.24-1.fc39.x86_64 1/152 Verifying : ansible-srpm-macros-1-10.fc39.noarch 2/152 Verifying : audit-libs-3.1.1-1.fc39.x86_64 3/152 Verifying : authselect-1.4.2-2.fc38.x86_64 4/152 Verifying : authselect-libs-1.4.2-2.fc38.x86_64 5/152 Verifying : basesystem-11-15.fc38.noarch 6/152 Verifying : bash-5.2.15-3.fc38.x86_64 7/152 Verifying : binutils-2.40-7.fc39.x86_64 8/152 Verifying : binutils-gold-2.40-7.fc39.x86_64 9/152 Verifying : bzip2-1.0.8-13.fc38.x86_64 10/152 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 11/152 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 12/152 Verifying : coreutils-9.3-1.fc39.x86_64 13/152 Verifying : coreutils-common-9.3-1.fc39.x86_64 14/152 Verifying : cpio-2.13-14.fc38.x86_64 15/152 Verifying : cracklib-2.9.7-31.fc38.x86_64 16/152 Verifying : crypto-policies-20230420-1.git3d08ae7.fc39.noarc 17/152 Verifying : curl-8.1.0-1.fc39.x86_64 18/152 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 19/152 Verifying : debugedit-5.0-7.fc38.x86_64 20/152 Verifying : diffutils-3.9-4.fc39.x86_64 21/152 Verifying : dwz-0.15-2.fc38.x86_64 22/152 Verifying : ed-1.19-2.fc38.x86_64 23/152 Verifying : efi-srpm-macros-5-7.fc38.noarch 24/152 Verifying : elfutils-0.189-2.fc39.x86_64 25/152 Verifying : elfutils-debuginfod-client-0.189-2.fc39.x86_64 26/152 Verifying : elfutils-default-yama-scope-0.189-2.fc39.noarch 27/152 Verifying : elfutils-libelf-0.189-2.fc39.x86_64 28/152 Verifying : elfutils-libs-0.189-2.fc39.x86_64 29/152 Verifying : fedora-gpg-keys-39-0.1.noarch 30/152 Verifying : fedora-release-39-0.11.noarch 31/152 Verifying : fedora-release-common-39-0.11.noarch 32/152 Verifying : fedora-release-identity-basic-39-0.11.noarch 33/152 Verifying : fedora-repos-39-0.1.noarch 34/152 Verifying : fedora-repos-rawhide-39-0.1.noarch 35/152 Verifying : file-5.44-3.fc39.x86_64 36/152 Verifying : file-libs-5.44-3.fc39.x86_64 37/152 Verifying : filesystem-3.18-4.fc39.x86_64 38/152 Verifying : findutils-1:4.9.0-4.fc39.x86_64 39/152 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/152 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/152 Verifying : gawk-5.1.1-5.fc38.x86_64 42/152 Verifying : gdb-minimal-13.1-5.fc39.x86_64 43/152 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 44/152 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/152 Verifying : glibc-2.37.9000-10.fc39.x86_64 46/152 Verifying : glibc-common-2.37.9000-10.fc39.x86_64 47/152 Verifying : glibc-gconv-extra-2.37.9000-10.fc39.x86_64 48/152 Verifying : glibc-minimal-langpack-2.37.9000-10.fc39.x86_64 49/152 Verifying : gmp-1:6.2.1-4.fc38.x86_64 50/152 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/152 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 52/152 Verifying : grep-3.9-1.fc39.x86_64 53/152 Verifying : gzip-1.12-3.fc38.x86_64 54/152 Verifying : info-7.0.3-1.fc39.x86_64 55/152 Verifying : jansson-2.13.1-6.fc38.x86_64 56/152 Verifying : kernel-srpm-macros-1.0-18.fc39.noarch 57/152 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 58/152 Verifying : krb5-libs-1.20.1-9.fc39.x86_64 59/152 Verifying : libacl-2.3.1-7.fc39.x86_64 60/152 Verifying : libarchive-3.6.1-5.fc39.x86_64 61/152 Verifying : libattr-2.5.1-7.fc39.x86_64 62/152 Verifying : libblkid-2.39-2.fc39.x86_64 63/152 Verifying : libbrotli-1.0.9-11.fc38.x86_64 64/152 Verifying : libcap-2.48-6.fc38.x86_64 65/152 Verifying : libcap-ng-0.8.3-5.fc38.x86_64 66/152 Verifying : libcom_err-1.46.5-4.fc38.x86_64 67/152 Verifying : libcurl-8.1.0-1.fc39.x86_64 68/152 Verifying : libdb-5.3.28-55.fc38.x86_64 69/152 Verifying : libeconf-0.4.0-5.fc38.x86_64 70/152 Verifying : libevent-2.1.12-8.fc38.x86_64 71/152 Verifying : libfdisk-2.39-2.fc39.x86_64 72/152 Verifying : libffi-3.4.4-2.fc38.x86_64 73/152 Verifying : libgcc-13.1.1-2.fc39.x86_64 74/152 Verifying : libgomp-13.1.1-2.fc39.x86_64 75/152 Verifying : libidn2-2.3.4-2.fc38.x86_64 76/152 Verifying : libmount-2.39-2.fc39.x86_64 77/152 Verifying : libnghttp2-1.53.0-1.fc39.x86_64 78/152 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/152 Verifying : libpkgconf-1.9.4-2.fc39.x86_64 80/152 Verifying : libpsl-0.21.2-2.fc38.x86_64 81/152 Verifying : libpwquality-1.4.5-3.fc38.x86_64 82/152 Verifying : libselinux-3.5-1.fc39.x86_64 83/152 Verifying : libsemanage-3.5-2.fc39.x86_64 84/152 Verifying : libsepol-3.5-1.fc39.x86_64 85/152 Verifying : libsigsegv-2.14-4.fc38.x86_64 86/152 Verifying : libsmartcols-2.39-2.fc39.x86_64 87/152 Verifying : libssh-0.10.5-1.fc39.x86_64 88/152 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/152 Verifying : libstdc++-13.1.1-2.fc39.x86_64 90/152 Verifying : libtasn1-4.19.0-2.fc38.x86_64 91/152 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 92/152 Verifying : libunistring1.0-1.0-1.fc38.x86_64 93/152 Verifying : libutempter-1.2.1-9.fc39.x86_64 94/152 Verifying : libuuid-2.39-2.fc39.x86_64 95/152 Verifying : libverto-0.3.2-5.fc38.x86_64 96/152 Verifying : libxcrypt-4.4.33-7.fc39.x86_64 97/152 Verifying : libxml2-2.10.4-1.fc39.x86_64 98/152 Verifying : libzstd-1.5.5-1.fc39.x86_64 99/152 Verifying : lua-libs-5.4.4-9.fc39.x86_64 100/152 Verifying : lua-srpm-macros-1-8.fc38.noarch 101/152 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 102/152 Verifying : mpfr-4.1.1-3.fc38.x86_64 103/152 Verifying : ncurses-base-6.4-3.20230114.fc38.noarch 104/152 Verifying : ncurses-libs-6.4-3.20230114.fc38.x86_64 105/152 Verifying : ocaml-srpm-macros-7-3.fc38.noarch 106/152 Verifying : openblas-srpm-macros-2-13.fc38.noarch 107/152 Verifying : openldap-2.6.4-2.fc39.x86_64 108/152 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 109/152 Verifying : p11-kit-0.24.1-6.fc38.x86_64 110/152 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 111/152 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 112/152 Verifying : pam-1.5.2-19.fc39.x86_64 113/152 Verifying : pam-libs-1.5.2-19.fc39.x86_64 114/152 Verifying : patch-2.7.6-21.fc39.x86_64 115/152 Verifying : pcre2-10.42-1.fc38.1.x86_64 116/152 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 117/152 Verifying : perl-srpm-macros-1-48.fc38.noarch 118/152 Verifying : pkgconf-1.9.4-2.fc39.x86_64 119/152 Verifying : pkgconf-m4-1.9.4-2.fc39.noarch 120/152 Verifying : pkgconf-pkg-config-1.9.4-2.fc39.x86_64 121/152 Verifying : popt-1.19-2.fc38.x86_64 122/152 Verifying : publicsuffix-list-dafsa-20230318-1.fc39.noarch 123/152 Verifying : pyproject-srpm-macros-1.8.0-1.fc39.noarch 124/152 Verifying : python-srpm-macros-3.11-10.fc39.noarch 125/152 Verifying : qt5-srpm-macros-5.15.9-1.fc39.noarch 126/152 Verifying : readline-8.2-3.fc38.x86_64 127/152 Verifying : redhat-rpm-config-254-1.fc39.noarch 128/152 Verifying : rpm-4.18.1-3.fc39.x86_64 129/152 Verifying : rpm-build-4.18.1-3.fc39.x86_64 130/152 Verifying : rpm-build-libs-4.18.1-3.fc39.x86_64 131/152 Verifying : rpm-libs-4.18.1-3.fc39.x86_64 132/152 Verifying : rpm-sequoia-1.4.0-3.fc39.x86_64 133/152 Verifying : rpmautospec-rpm-macros-0.3.5-1.fc38.noarch 134/152 Verifying : rust-srpm-macros-24-2.fc39.noarch 135/152 Verifying : sed-4.8-12.fc38.x86_64 136/152 Verifying : setup-2.14.3-3.fc39.noarch 137/152 Verifying : shadow-utils-2:4.13-6.fc39.x86_64 138/152 Verifying : sqlite-libs-3.41.2-1.fc39.x86_64 139/152 Verifying : systemd-libs-253.4-1.fc39.x86_64 140/152 Verifying : tar-2:1.34-8.fc39.x86_64 141/152 Verifying : tzdata-2023c-1.fc39.noarch 142/152 Verifying : unzip-6.0-60.fc38.x86_64 143/152 Verifying : util-linux-2.39-2.fc39.x86_64 144/152 Verifying : util-linux-core-2.39-2.fc39.x86_64 145/152 Verifying : which-2.21-39.fc39.x86_64 146/152 Verifying : xxhash-libs-0.8.1-4.fc38.x86_64 147/152 Verifying : xz-5.4.3-1.fc39.x86_64 148/152 Verifying : xz-libs-5.4.3-1.fc39.x86_64 149/152 Verifying : zip-3.0-36.fc38.x86_64 150/152 Verifying : zlib-1.2.13-3.fc38.x86_64 151/152 Verifying : zstd-1.5.5-1.fc39.x86_64 152/152 Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-1.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-15.fc38.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-7.fc39.x86_64 binutils-gold-2.40-7.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.13-14.fc38.x86_64 cracklib-2.9.7-31.fc38.x86_64 crypto-policies-20230420-1.git3d08ae7.fc39.noarch curl-8.1.0-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-7.fc38.x86_64 diffutils-3.9-4.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch elfutils-0.189-2.fc39.x86_64 elfutils-debuginfod-client-0.189-2.fc39.x86_64 elfutils-default-yama-scope-0.189-2.fc39.noarch elfutils-libelf-0.189-2.fc39.x86_64 elfutils-libs-0.189-2.fc39.x86_64 fedora-gpg-keys-39-0.1.noarch fedora-release-39-0.11.noarch fedora-release-common-39-0.11.noarch fedora-release-identity-basic-39-0.11.noarch fedora-repos-39-0.1.noarch fedora-repos-rawhide-39-0.1.noarch file-5.44-3.fc39.x86_64 file-libs-5.44-3.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.1.1-5.fc38.x86_64 gdb-minimal-13.1-5.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-10.fc39.x86_64 glibc-common-2.37.9000-10.fc39.x86_64 glibc-gconv-extra-2.37.9000-10.fc39.x86_64 glibc-minimal-langpack-2.37.9000-10.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.9-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-1.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-18.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39-2.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 libcom_err-1.46.5-4.fc38.x86_64 libcurl-8.1.0-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39-2.fc39.x86_64 libffi-3.4.4-2.fc38.x86_64 libgcc-13.1.1-2.fc39.x86_64 libgomp-13.1.1-2.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39-2.fc39.x86_64 libnghttp2-1.53.0-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.4-2.fc39.x86_64 libpsl-0.21.2-2.fc38.x86_64 libpwquality-1.4.5-3.fc38.x86_64 libselinux-3.5-1.fc39.x86_64 libsemanage-3.5-2.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39-2.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-2.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.33-7.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.1.1-3.fc38.x86_64 ncurses-base-6.4-3.20230114.fc38.noarch ncurses-libs-6.4-3.20230114.fc38.x86_64 ocaml-srpm-macros-7-3.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-2.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.2-19.fc39.x86_64 pam-libs-1.5.2-19.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-48.fc38.noarch pkgconf-1.9.4-2.fc39.x86_64 pkgconf-m4-1.9.4-2.fc39.noarch pkgconf-pkg-config-1.9.4-2.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230318-1.fc39.noarch pyproject-srpm-macros-1.8.0-1.fc39.noarch python-srpm-macros-3.11-10.fc39.noarch qt5-srpm-macros-5.15.9-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-254-1.fc39.noarch rpm-4.18.1-3.fc39.x86_64 rpm-build-4.18.1-3.fc39.x86_64 rpm-build-libs-4.18.1-3.fc39.x86_64 rpm-libs-4.18.1-3.fc39.x86_64 rpm-sequoia-1.4.0-3.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-6.fc39.x86_64 sqlite-libs-3.41.2-1.fc39.x86_64 systemd-libs-253.4-1.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39-2.fc39.x86_64 util-linux-core-2.39-2.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libffi-3.4.4-2.fc38.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch coreutils-9.3-1.fc39.x86_64 libpsl-0.21.2-2.fc38.x86_64 jansson-2.13.1-6.fc38.x86_64 file-libs-5.44-3.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch filesystem-3.18-4.fc39.x86_64 libbrotli-1.0.9-11.fc38.x86_64 gpg-pubkey-18b8e74c-62f2920f libgcc-13.1.1-2.fc39.x86_64 libpwquality-1.4.5-3.fc38.x86_64 efi-srpm-macros-5-7.fc38.noarch pkgconf-pkg-config-1.9.4-2.fc39.x86_64 zip-3.0-36.fc38.x86_64 shadow-utils-4.13-6.fc39.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 basesystem-11-15.fc38.noarch libzstd-1.5.5-1.fc39.x86_64 libxml2-2.10.4-1.fc39.x86_64 fedora-repos-rawhide-39-0.1.noarch libpkgconf-1.9.4-2.fc39.x86_64 zstd-1.5.5-1.fc39.x86_64 gmp-6.2.1-4.fc38.x86_64 ncurses-libs-6.4-3.20230114.fc38.x86_64 mpfr-4.1.1-3.fc38.x86_64 perl-srpm-macros-1-48.fc38.noarch libssh-0.10.5-1.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 bash-5.2.15-3.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 rpm-sequoia-1.4.0-3.fc39.x86_64 fedora-release-39-0.11.noarch elfutils-libs-0.189-2.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 authselect-1.4.2-2.fc38.x86_64 rpm-libs-4.18.1-3.fc39.x86_64 glibc-common-2.37.9000-10.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libselinux-3.5-1.fc39.x86_64 diffutils-3.9-4.fc39.x86_64 debugedit-5.0-7.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 glibc-2.37.9000-10.fc39.x86_64 pkgconf-1.9.4-2.fc39.x86_64 libfdisk-2.39-2.fc39.x86_64 rpm-4.18.1-3.fc39.x86_64 krb5-libs-1.20.1-9.fc39.x86_64 libcom_err-1.46.5-4.fc38.x86_64 sqlite-libs-3.41.2-1.fc39.x86_64 cracklib-2.9.7-31.fc38.x86_64 elfutils-default-yama-scope-0.189-2.fc39.noarch ca-certificates-2023.2.60-2.fc38.noarch setup-2.14.3-3.fc39.noarch libtirpc-1.3.3-1.rc1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 kernel-srpm-macros-1.0-18.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 libsemanage-3.5-2.fc39.x86_64 libsmartcols-2.39-2.fc39.x86_64 openssl-libs-3.0.8-2.fc39.x86_64 libblkid-2.39-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 alternatives-1.24-1.fc39.x86_64 python-srpm-macros-3.11-10.fc39.noarch file-5.44-3.fc39.x86_64 libcap-ng-0.8.3-5.fc38.x86_64 fedora-gpg-keys-39-0.1.noarch libssh-config-0.10.5-1.fc39.noarch fedora-release-identity-basic-39-0.11.noarch openblas-srpm-macros-2-13.fc38.noarch libsigsegv-2.14-4.fc38.x86_64 tzdata-2023c-1.fc39.noarch libgomp-13.1.1-2.fc39.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch readline-8.2-3.fc38.x86_64 pam-libs-1.5.2-19.fc39.x86_64 binutils-2.40-7.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 gdbm-libs-1.23-3.fc38.x86_64 ed-1.19-2.fc38.x86_64 audit-libs-3.1.1-1.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ansible-srpm-macros-1-10.fc39.noarch elfutils-libelf-0.189-2.fc39.x86_64 crypto-policies-20230420-1.git3d08ae7.fc39.noarch libcap-2.48-6.fc38.x86_64 which-2.21-39.fc39.x86_64 publicsuffix-list-dafsa-20230318-1.fc39.noarch pcre2-syntax-10.42-1.fc38.1.noarch fedora-repos-39-0.1.noarch pcre2-10.42-1.fc38.1.x86_64 pyproject-srpm-macros-1.8.0-1.fc39.noarch libidn2-2.3.4-2.fc38.x86_64 libacl-2.3.1-7.fc39.x86_64 elfutils-0.189-2.fc39.x86_64 util-linux-2.39-2.fc39.x86_64 go-srpm-macros-3.2.0-3.fc39.noarch libutempter-1.2.1-9.fc39.x86_64 gawk-5.1.1-5.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 libstdc++-13.1.1-2.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 pkgconf-m4-1.9.4-2.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 rpm-build-4.18.1-3.fc39.x86_64 gdb-minimal-13.1-5.fc39.x86_64 cpio-2.13-14.fc38.x86_64 grep-3.9-1.fc39.x86_64 unzip-6.0-60.fc38.x86_64 libuuid-2.39-2.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 sed-4.8-12.fc38.x86_64 popt-1.19-2.fc38.x86_64 libmount-2.39-2.fc39.x86_64 gzip-1.12-3.fc38.x86_64 tar-1.34-8.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 glibc-minimal-langpack-2.37.9000-10.fc39.x86_64 redhat-rpm-config-254-1.fc39.noarch ocaml-srpm-macros-7-3.fc38.noarch libunistring1.0-1.0-1.fc38.x86_64 xxhash-libs-0.8.1-4.fc38.x86_64 curl-8.1.0-1.fc39.x86_64 info-7.0.3-1.fc39.x86_64 gpg-pubkey-eb10b464-6202d9c6 pam-1.5.2-19.fc39.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 findutils-4.9.0-4.fc39.x86_64 systemd-libs-253.4-1.fc39.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch package-notes-srpm-macros-0.5-8.fc39.noarch libnsl2-2.0.0-5.fc38.x86_64 libnghttp2-1.53.0-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 gnat-srpm-macros-6-2.fc38.noarch openldap-2.6.4-2.fc39.x86_64 rpm-build-libs-4.18.1-3.fc39.x86_64 qt5-srpm-macros-5.15.9-1.fc39.noarch libxcrypt-4.4.33-7.fc39.x86_64 libcurl-8.1.0-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 fedora-release-common-39-0.11.noarch libattr-2.5.1-7.fc39.x86_64 util-linux-core-2.39-2.fc39.x86_64 elfutils-debuginfod-client-0.189-2.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-1.fc38.noarch ncurses-base-6.4-3.20230114.fc38.noarch glibc-gconv-extra-2.37.9000-10.fc39.x86_64 binutils-gold-2.40-7.fc39.x86_64 rust-srpm-macros-24-2.fc39.noarch Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674259200 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-4.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-84wvm6vl/smoldyn/smoldyn.spec) Config(child) 0 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-4.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1684773546.146583 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-4.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1684773546.146583/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1684773546.146583/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 57 kB/s | 1.5 kB 00:00 fedora 97 kB/s | 20 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-4.fc39.src.rpm Start: build setup for smoldyn-2.67.3-4.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674259200 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-4.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 58 kB/s | 1.5 kB 00:00 fedora 329 kB/s | 20 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: boost-devel x86_64 1.81.0-1.fc39 fedora 14 M cmake x86_64 3.26.4-2.fc39 fedora 6.9 M freeglut-devel x86_64 3.4.0-3.fc39 fedora 949 k gcc x86_64 13.1.1-2.fc39 fedora 34 M gcc-c++ x86_64 13.1.1-2.fc39 fedora 13 M libXi-devel x86_64 1.8.1-1.fc39 fedora 116 k libXmu-devel x86_64 1.1.4-2.fc38 fedora 27 k libglvnd-devel x86_64 1:1.6.0-2.fc38 fedora 163 k libtiff-devel x86_64 4.5.0-2.fc39 copr_base 240 k make x86_64 1:4.4.1-1.fc39 fedora 589 k perl-macros noarch 4:5.36.1-497.fc39 fedora 13 k pybind11-devel x86_64 2.10.4-1.fc39 fedora 172 k python3-devel x86_64 3.11.3-1.fc39 fedora 269 k python3-flaky noarch 3.7.0-10.fc38 fedora 46 k python3-matplotlib x86_64 3.7.1-1.fc39 fedora 4.3 M python3-setuptools noarch 67.7.2-2.fc39 fedora 1.5 M python3-wheel noarch 1:0.40.0-1.fc39 fedora 166 k xorg-x11-server-Xvfb x86_64 1.20.14-23.fc39 fedora 888 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Installing dependencies: annobin-docs noarch 12.10-1.fc39 fedora 95 k annobin-plugin-gcc x86_64 12.10-1.fc39 fedora 893 k boost x86_64 1.81.0-1.fc39 fedora 14 k boost-atomic x86_64 1.81.0-1.fc39 fedora 20 k boost-chrono x86_64 1.81.0-1.fc39 fedora 26 k boost-container x86_64 1.81.0-1.fc39 fedora 40 k boost-context x86_64 1.81.0-1.fc39 fedora 17 k boost-contract x86_64 1.81.0-1.fc39 fedora 46 k boost-coroutine x86_64 1.81.0-1.fc39 fedora 20 k boost-date-time x86_64 1.81.0-1.fc39 fedora 16 k boost-fiber x86_64 1.81.0-1.fc39 fedora 42 k boost-filesystem x86_64 1.81.0-1.fc39 fedora 66 k boost-graph x86_64 1.81.0-1.fc39 fedora 151 k boost-iostreams x86_64 1.81.0-1.fc39 fedora 42 k boost-json x86_64 1.81.0-1.fc39 fedora 110 k boost-locale x86_64 1.81.0-1.fc39 fedora 222 k boost-log x86_64 1.81.0-1.fc39 fedora 491 k boost-math x86_64 1.81.0-1.fc39 fedora 221 k boost-nowide x86_64 1.81.0-1.fc39 fedora 21 k boost-numpy3 x86_64 1.81.0-1.fc39 fedora 30 k boost-program-options x86_64 1.81.0-1.fc39 fedora 109 k boost-python3 x86_64 1.81.0-1.fc39 fedora 97 k boost-random x86_64 1.81.0-1.fc39 fedora 24 k boost-regex x86_64 1.81.0-1.fc39 fedora 111 k boost-serialization x86_64 1.81.0-1.fc39 fedora 136 k boost-stacktrace x86_64 1.81.0-1.fc39 fedora 31 k boost-system x86_64 1.81.0-1.fc39 fedora 16 k boost-test x86_64 1.81.0-1.fc39 fedora 239 k boost-thread x86_64 1.81.0-1.fc39 fedora 58 k boost-timer x86_64 1.81.0-1.fc39 fedora 24 k boost-type_erasure x86_64 1.81.0-1.fc39 fedora 33 k boost-wave x86_64 1.81.0-1.fc39 fedora 225 k cairo x86_64 1.17.8-4.fc39 fedora 706 k cmake-data noarch 3.26.4-2.fc39 fedora 2.2 M cmake-filesystem x86_64 3.26.4-2.fc39 fedora 17 k cmake-rpm-macros noarch 3.26.4-2.fc39 fedora 17 k cpp x86_64 13.1.1-2.fc39 fedora 11 M dejavu-sans-fonts noarch 2.37-20.fc38 fedora 1.3 M emacs-filesystem noarch 1:28.2-6.fc39 copr_base 8.3 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-3.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-3.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-3.fc39 fedora 17 k fontconfig x86_64 2.14.2-2.fc39 fedora 295 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freeglut x86_64 3.4.0-3.fc39 fedora 155 k freetype x86_64 2.13.0-1.fc39 fedora 413 k fribidi x86_64 1.0.13-1.fc39 fedora 90 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc-plugin-annobin x86_64 13.1.1-2.fc39 fedora 44 k gl-manpages noarch 1.1-26.20190306.fc38 fedora 1.2 M glib2 x86_64 2.76.2-1.fc39 fedora 2.8 M glibc-devel x86_64 2.37.9000-10.fc39 fedora 71 k glibc-headers-x86 noarch 2.37.9000-10.fc39 fedora 550 k gnutls x86_64 3.8.0-3.fc39 fedora 1.1 M google-noto-fonts-common noarch 20230501-1.fc39 fedora 16 k google-noto-sans-vf-fonts noarch 20230501-1.fc39 fedora 583 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k groff-base x86_64 1.22.4-11.fc38 fedora 1.1 M guile22 x86_64 2.2.7-8.fc39 fedora 6.5 M harfbuzz x86_64 7.3.0-1.fc39 fedora 912 k hwdata noarch 0.370-1.fc39 fedora 1.6 M jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k jsoncpp x86_64 1.9.5-4.fc38 fedora 97 k kernel-headers x86_64 6.4.0-0.rc2.git0.1.fc39 fedora 1.5 M langpacks-core-font-en noarch 3.0-32.fc39 fedora 9.6 k lcms2 x86_64 2.15-1.fc39 copr_base 178 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libICE-devel x86_64 1.0.10-10.fc38 fedora 46 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libSM-devel x86_64 1.2.3-12.fc38 fedora 12 k libX11 x86_64 1.8.4-1.fc38 fedora 649 k libX11-common noarch 1.8.4-1.fc38 fedora 177 k libX11-devel x86_64 1.8.4-1.fc38 fedora 1.0 M libX11-xcb x86_64 1.8.4-1.fc38 fedora 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXdmcp x86_64 1.1.3-10.fc38 fedora 35 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXext-devel x86_64 1.3.5-2.fc38 fedora 85 k libXfixes x86_64 6.0.0-5.fc38 fedora 19 k libXfixes-devel x86_64 6.0.0-5.fc38 fedora 12 k libXfont2 x86_64 2.0.3-14.fc38 fedora 144 k libXft x86_64 2.3.8-2.fc39 fedora 72 k libXi x86_64 1.8.1-1.fc39 fedora 40 k libXmu x86_64 1.1.4-2.fc38 fedora 77 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXt-devel x86_64 1.2.1-4.fc38 fedora 460 k libXxf86vm x86_64 1.1.5-2.fc38 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libdrm x86_64 2.4.114-2.fc38 fedora 157 k libdrm-devel x86_64 2.4.114-2.fc38 fedora 174 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.1.1-2.fc39 fedora 895 k libglvnd x86_64 1:1.6.0-2.fc38 fedora 134 k libglvnd-core-devel x86_64 1:1.6.0-2.fc38 fedora 18 k libglvnd-egl x86_64 1:1.6.0-2.fc38 fedora 36 k libglvnd-gles x86_64 1:1.6.0-2.fc38 fedora 32 k libglvnd-glx x86_64 1:1.6.0-2.fc38 fedora 142 k libglvnd-opengl x86_64 1:1.6.0-2.fc38 fedora 43 k libicu x86_64 72.1-2.fc38 fedora 10 M libicu-devel x86_64 72.1-2.fc38 fedora 918 k libimagequant x86_64 4.0.1-4.fc39 fedora 302 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libjpeg-turbo-devel x86_64 2.1.4-2.fc38 fedora 98 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpciaccess x86_64 0.16-8.fc38 fedora 26 k libpciaccess-devel x86_64 0.16-8.fc38 fedora 12 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libqhull_r x86_64 1:7.2.1-12.fc38 fedora 167 k libquadmath x86_64 13.1.1-2.fc39 fedora 191 k libquadmath-devel x86_64 13.1.1-2.fc39 fedora 33 k libraqm x86_64 0.8.0-4.fc38 fedora 20 k libstdc++-devel x86_64 13.1.1-2.fc39 fedora 2.6 M libtiff x86_64 4.5.0-2.fc39 copr_base 299 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunwind x86_64 1.7.0-0.1.rc2.fc39 fedora 70 k libuv x86_64 1:1.44.2-3.fc38 fedora 152 k libwayland-client x86_64 1.22.0-1.fc39 fedora 33 k libwayland-server x86_64 1.22.0-1.fc39 fedora 42 k libwebp x86_64 1.3.0-2.fc39 copr_base 283 k libwebp-devel x86_64 1.3.0-2.fc39 copr_base 39 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.33-7.fc39 fedora 30 k libxkbfile x86_64 1.1.1-2.fc38 fedora 90 k libxshmfence x86_64 1.3-12.fc38 fedora 12 k libxslt x86_64 1.1.38-1.fc39 fedora 186 k libzstd-devel x86_64 1.5.5-1.fc39 fedora 51 k mesa-libEGL x86_64 23.0.3-4.fc39 fedora 131 k mesa-libGL x86_64 23.0.3-4.fc39 fedora 173 k mesa-libGL-devel x86_64 23.0.3-4.fc39 fedora 35 k mesa-libGLU x86_64 9.0.1-8.fc38 fedora 155 k mesa-libGLU-devel x86_64 9.0.1-8.fc38 fedora 13 k mesa-libgbm x86_64 23.0.3-4.fc39 fedora 45 k mesa-libglapi x86_64 23.0.3-4.fc39 fedora 55 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k ncurses x86_64 6.4-3.20230114.fc38 fedora 412 k nettle x86_64 3.8-3.fc38 fedora 412 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-3.fc39 copr_base 179 k perl-Carp noarch 1.54-1.fc39 fedora 29 k perl-Class-Struct noarch 0.66-497.fc39 fedora 23 k perl-DynaLoader x86_64 1.52-497.fc39 fedora 27 k perl-Encode x86_64 4:3.19-493.fc38 fedora 1.7 M perl-Errno x86_64 1.36-497.fc39 fedora 16 k perl-Exporter noarch 5.77-490.fc38 fedora 31 k perl-Fcntl x86_64 1.15-497.fc39 fedora 22 k perl-File-Basename noarch 2.85-497.fc39 fedora 18 k perl-File-Path noarch 2.18-490.fc38 fedora 35 k perl-File-Temp noarch 1:0.231.100-490.fc38 fedora 59 k perl-File-stat noarch 1.12-497.fc39 fedora 18 k perl-Getopt-Long noarch 1:2.54-2.fc38 fedora 60 k perl-Getopt-Std noarch 1.13-497.fc39 fedora 17 k perl-HTTP-Tiny noarch 0.082-2.fc38 fedora 55 k perl-IO x86_64 1.50-497.fc39 fedora 93 k perl-IPC-Open3 noarch 1.22-497.fc39 fedora 24 k perl-MIME-Base64 x86_64 3.16-490.fc38 fedora 30 k perl-POSIX x86_64 2.03-497.fc39 fedora 99 k perl-PathTools x86_64 3.89-1.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-490.fc38 fedora 20 k perl-Pod-Perldoc noarch 3.28.01-491.fc38 fedora 86 k perl-Pod-Simple noarch 1:3.45-2.fc39 fedora 219 k perl-Pod-Usage noarch 4:2.03-4.fc38 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-490.fc38 fedora 72 k perl-SelectSaver noarch 1.02-497.fc39 fedora 13 k perl-Socket x86_64 4:2.036-2.fc38 fedora 55 k perl-Storable x86_64 1:3.31-1.fc39 fedora 97 k perl-Symbol noarch 1.09-497.fc39 fedora 15 k perl-Term-ANSIColor noarch 5.01-491.fc38 fedora 47 k perl-Term-Cap noarch 1.18-1.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-490.fc38 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-1.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-1.fc39 fedora 34 k perl-constant noarch 1.33-491.fc38 fedora 23 k perl-if noarch 0.61.000-497.fc39 fedora 15 k perl-interpreter x86_64 4:5.36.1-497.fc39 fedora 73 k perl-libs x86_64 4:5.36.1-497.fc39 fedora 2.2 M perl-locale noarch 1.10-497.fc39 fedora 15 k perl-mro x86_64 1.26-497.fc39 fedora 30 k perl-overload noarch 1.35-497.fc39 fedora 47 k perl-overloading noarch 0.02-497.fc39 fedora 14 k perl-parent noarch 1:0.241-1.fc39 fedora 14 k perl-podlators noarch 1:5.01-2.fc38 fedora 125 k perl-vars noarch 1.05-497.fc39 fedora 14 k pixman x86_64 0.42.2-1.fc39 fedora 284 k pyproject-rpm-macros noarch 1.8.0-1.fc39 fedora 41 k python-pip-wheel noarch 23.0.1-2.fc39 fedora 1.4 M python-rpm-macros noarch 3.11-10.fc39 fedora 20 k python-setuptools-wheel noarch 67.7.2-2.fc39 fedora 661 k python3 x86_64 3.11.3-1.fc39 fedora 28 k python3-appdirs noarch 1.4.4-8.fc38 fedora 23 k python3-brotli x86_64 1.0.9-11.fc38 fedora 320 k python3-cairo x86_64 1.23.0-2.fc38 fedora 125 k python3-contourpy x86_64 1.0.7-2.fc38 fedora 237 k python3-cycler noarch 0.11.0-7.fc38 fedora 21 k python3-dateutil noarch 1:2.8.2-6.fc39 fedora 360 k python3-fonttools x86_64 4.39.4-1.fc39 fedora 2.8 M python3-fs noarch 2.4.16-1.fc39 fedora 312 k python3-kiwisolver x86_64 1.4.4-7.fc38 fedora 66 k python3-libs x86_64 3.11.3-1.fc39 fedora 9.6 M python3-lxml x86_64 4.9.2-2.fc38 fedora 1.3 M python3-matplotlib-data noarch 3.7.1-1.fc39 fedora 543 k python3-matplotlib-data-fonts noarch 3.7.1-1.fc39 fedora 2.3 M python3-matplotlib-tk x86_64 3.7.1-1.fc39 fedora 53 k python3-munkres noarch 1.1.2-14.fc38 fedora 26 k python3-numpy x86_64 1:1.24.3-1.fc39 fedora 7.9 M python3-numpy-f2py x86_64 1:1.24.3-1.fc39 fedora 499 k python3-olefile noarch 0.46-19.fc38 fedora 67 k python3-packaging noarch 23.1-1.fc39 fedora 117 k python3-pillow x86_64 9.5.0-1.fc39 copr_base 884 k python3-pillow-tk x86_64 9.5.0-1.fc39 copr_base 31 k python3-pyparsing noarch 3.0.9-3.fc38 fedora 262 k python3-rpm-generators noarch 14-5.fc39 fedora 30 k python3-rpm-macros noarch 3.11-10.fc39 fedora 15 k python3-scipy x86_64 1.10.1-2.fc39 fedora 21 M python3-six noarch 1.16.0-9.fc38 fedora 42 k python3-tkinter x86_64 3.11.3-1.fc39 fedora 417 k rhash x86_64 1.4.3-2.fc38 fedora 194 k tcl x86_64 1:8.6.12-4.fc38 fedora 1.1 M tk x86_64 1:8.6.12-4.fc38 fedora 1.6 M vim-filesystem noarch 2:9.0.1562-1.fc39 fedora 18 k xkbcomp x86_64 1.4.6-5.fc38 fedora 101 k xkeyboard-config noarch 2.38-1.fc38 fedora 963 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-proto-devel noarch 2022.2-3.fc38 fedora 299 k xorg-x11-server-common x86_64 1.20.14-23.fc39 fedora 35 k xorg-x11-xauth x86_64 1:1.1.2-3.fc38 fedora 36 k Transaction Summary ================================================================================ Install 250 Packages Total size: 211 M Total download size: 80 M Installed size: 872 M Downloading Packages: [SKIPPED] emacs-filesystem-28.2-6.fc39.noarch.rpm: Already downloaded [SKIPPED] lcms2-2.15-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtiff-4.5.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libtiff-devel-4.5.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libwebp-1.3.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] libwebp-devel-1.3.0-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] openjpeg2-2.5.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] annobin-docs-12.10-1.fc39.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.10-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] cairo-1.17.8-4.fc39.x86_64.rpm: Already downloaded [SKIPPED] cmake-filesystem-3.26.4-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] cpp-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] expat-2.5.0-2.fc38.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-3.3.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-netlib-3.3.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] flexiblas-openblas-openmp-3.3.1-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] fontconfig-2.14.2-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] fonts-filesystem-2.0.5-11.fc38.noarch.rpm: Already downloaded [SKIPPED] freetype-2.13.0-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] fribidi-1.0.13-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] gc-8.2.2-3.fc38.x86_64.rpm: Already downloaded [SKIPPED] gcc-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-c++-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.1.1-2.fc39.x86_64.rpm: Already downloaded [SKIPPED] glib2-2.76.2-1.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-devel-2.37.9000-10.fc39.x86_64.rpm: Already downloaded [SKIPPED] glibc-headers-x86-2.37.9000-10.fc39.noarch.rpm: Already downloaded [SKIPPED] gnutls-3.8.0-3.fc39.x86_64.rpm: Already downloaded [SKIPPED] google-noto-fonts-common-20230501-1.fc39.noarch.rpm: Already downloaded [SKIPPED] google-noto-sans-vf-fonts-20230501-1.fc39.noarch.rpm: Already downloaded [SKIPPED] graphite2-1.3.14-11.fc38.x86_64.rpm: Already downloaded [SKIPPED] 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Running transaction test Transaction test succeeded. 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Verifying : perl-Pod-Perldoc-3.28.01-491.fc38.noarch 177/250 Verifying : perl-Pod-Simple-1:3.45-2.fc39.noarch 178/250 Verifying : perl-Pod-Usage-4:2.03-4.fc38.noarch 179/250 Verifying : perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 180/250 Verifying : perl-SelectSaver-1.02-497.fc39.noarch 181/250 Verifying : perl-Socket-4:2.036-2.fc38.x86_64 182/250 Verifying : perl-Storable-1:3.31-1.fc39.x86_64 183/250 Verifying : perl-Symbol-1.09-497.fc39.noarch 184/250 Verifying : perl-Term-ANSIColor-5.01-491.fc38.noarch 185/250 Verifying : perl-Term-Cap-1.18-1.fc39.noarch 186/250 Verifying : perl-Text-ParseWords-3.31-490.fc38.noarch 187/250 Verifying : perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch 188/250 Verifying : perl-Time-Local-2:1.350-1.fc39.noarch 189/250 Verifying : perl-constant-1.33-491.fc38.noarch 190/250 Verifying : perl-if-0.61.000-497.fc39.noarch 191/250 Verifying : perl-interpreter-4:5.36.1-497.fc39.x86_64 192/250 Verifying : perl-libs-4:5.36.1-497.fc39.x86_64 193/250 Verifying : 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python3-contourpy-1.0.7-2.fc38.x86_64 212/250 Verifying : python3-cycler-0.11.0-7.fc38.noarch 213/250 Verifying : python3-dateutil-1:2.8.2-6.fc39.noarch 214/250 Verifying : python3-devel-3.11.3-1.fc39.x86_64 215/250 Verifying : python3-flaky-3.7.0-10.fc38.noarch 216/250 Verifying : python3-fonttools-4.39.4-1.fc39.x86_64 217/250 Verifying : python3-fs-2.4.16-1.fc39.noarch 218/250 Verifying : python3-kiwisolver-1.4.4-7.fc38.x86_64 219/250 Verifying : python3-libs-3.11.3-1.fc39.x86_64 220/250 Verifying : python3-lxml-4.9.2-2.fc38.x86_64 221/250 Verifying : python3-matplotlib-3.7.1-1.fc39.x86_64 222/250 Verifying : python3-matplotlib-data-3.7.1-1.fc39.noarch 223/250 Verifying : python3-matplotlib-data-fonts-3.7.1-1.fc39.noarc 224/250 Verifying : python3-matplotlib-tk-3.7.1-1.fc39.x86_64 225/250 Verifying : python3-munkres-1.1.2-14.fc38.noarch 226/250 Verifying : python3-numpy-1:1.24.3-1.fc39.x86_64 227/250 Verifying : python3-numpy-f2py-1:1.24.3-1.fc39.x86_64 228/250 Verifying : python3-olefile-0.46-19.fc38.noarch 229/250 Verifying : python3-packaging-23.1-1.fc39.noarch 230/250 Verifying : python3-pyparsing-3.0.9-3.fc38.noarch 231/250 Verifying : python3-rpm-generators-14-5.fc39.noarch 232/250 Verifying : python3-rpm-macros-3.11-10.fc39.noarch 233/250 Verifying : python3-scipy-1.10.1-2.fc39.x86_64 234/250 Verifying : python3-setuptools-67.7.2-2.fc39.noarch 235/250 Verifying : python3-six-1.16.0-9.fc38.noarch 236/250 Verifying : python3-tkinter-3.11.3-1.fc39.x86_64 237/250 Verifying : python3-wheel-1:0.40.0-1.fc39.noarch 238/250 Verifying : rhash-1.4.3-2.fc38.x86_64 239/250 Verifying : tcl-1:8.6.12-4.fc38.x86_64 240/250 Verifying : tk-1:8.6.12-4.fc38.x86_64 241/250 Verifying : vim-filesystem-2:9.0.1562-1.fc39.noarch 242/250 Verifying : xkbcomp-1.4.6-5.fc38.x86_64 243/250 Verifying : xkeyboard-config-2.38-1.fc38.noarch 244/250 Verifying : xml-common-0.6.3-60.fc38.noarch 245/250 Verifying : xorg-x11-proto-devel-2022.2-3.fc38.noarch 246/250 Verifying : xorg-x11-server-Xvfb-1.20.14-23.fc39.x86_64 247/250 Verifying : xorg-x11-server-common-1.20.14-23.fc39.x86_64 248/250 Verifying : xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 249/250 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 250/250 Installed: annobin-docs-12.10-1.fc39.noarch annobin-plugin-gcc-12.10-1.fc39.x86_64 boost-1.81.0-1.fc39.x86_64 boost-atomic-1.81.0-1.fc39.x86_64 boost-chrono-1.81.0-1.fc39.x86_64 boost-container-1.81.0-1.fc39.x86_64 boost-context-1.81.0-1.fc39.x86_64 boost-contract-1.81.0-1.fc39.x86_64 boost-coroutine-1.81.0-1.fc39.x86_64 boost-date-time-1.81.0-1.fc39.x86_64 boost-devel-1.81.0-1.fc39.x86_64 boost-fiber-1.81.0-1.fc39.x86_64 boost-filesystem-1.81.0-1.fc39.x86_64 boost-graph-1.81.0-1.fc39.x86_64 boost-iostreams-1.81.0-1.fc39.x86_64 boost-json-1.81.0-1.fc39.x86_64 boost-locale-1.81.0-1.fc39.x86_64 boost-log-1.81.0-1.fc39.x86_64 boost-math-1.81.0-1.fc39.x86_64 boost-nowide-1.81.0-1.fc39.x86_64 boost-numpy3-1.81.0-1.fc39.x86_64 boost-program-options-1.81.0-1.fc39.x86_64 boost-python3-1.81.0-1.fc39.x86_64 boost-random-1.81.0-1.fc39.x86_64 boost-regex-1.81.0-1.fc39.x86_64 boost-serialization-1.81.0-1.fc39.x86_64 boost-stacktrace-1.81.0-1.fc39.x86_64 boost-system-1.81.0-1.fc39.x86_64 boost-test-1.81.0-1.fc39.x86_64 boost-thread-1.81.0-1.fc39.x86_64 boost-timer-1.81.0-1.fc39.x86_64 boost-type_erasure-1.81.0-1.fc39.x86_64 boost-wave-1.81.0-1.fc39.x86_64 cairo-1.17.8-4.fc39.x86_64 cmake-3.26.4-2.fc39.x86_64 cmake-data-3.26.4-2.fc39.noarch cmake-filesystem-3.26.4-2.fc39.x86_64 cmake-rpm-macros-3.26.4-2.fc39.noarch cpp-13.1.1-2.fc39.x86_64 dejavu-sans-fonts-2.37-20.fc38.noarch emacs-filesystem-1:28.2-6.fc39.noarch expat-2.5.0-2.fc38.x86_64 flexiblas-3.3.1-3.fc39.x86_64 flexiblas-netlib-3.3.1-3.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-3.fc39.x86_64 fontconfig-2.14.2-2.fc39.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freeglut-3.4.0-3.fc39.x86_64 freeglut-devel-3.4.0-3.fc39.x86_64 freetype-2.13.0-1.fc39.x86_64 fribidi-1.0.13-1.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-2.fc39.x86_64 gcc-c++-13.1.1-2.fc39.x86_64 gcc-plugin-annobin-13.1.1-2.fc39.x86_64 gl-manpages-1.1-26.20190306.fc38.noarch glib2-2.76.2-1.fc39.x86_64 glibc-devel-2.37.9000-10.fc39.x86_64 glibc-headers-x86-2.37.9000-10.fc39.noarch gnutls-3.8.0-3.fc39.x86_64 google-noto-fonts-common-20230501-1.fc39.noarch google-noto-sans-vf-fonts-20230501-1.fc39.noarch graphite2-1.3.14-11.fc38.x86_64 groff-base-1.22.4-11.fc38.x86_64 guile22-2.2.7-8.fc39.x86_64 harfbuzz-7.3.0-1.fc39.x86_64 hwdata-0.370-1.fc39.noarch jbigkit-libs-2.1-25.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 kernel-headers-6.4.0-0.rc2.git0.1.fc39.x86_64 langpacks-core-font-en-3.0-32.fc39.noarch lcms2-2.15-1.fc39.x86_64 libICE-1.0.10-10.fc38.x86_64 libICE-devel-1.0.10-10.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libSM-devel-1.2.3-12.fc38.x86_64 libX11-1.8.4-1.fc38.x86_64 libX11-common-1.8.4-1.fc38.noarch libX11-devel-1.8.4-1.fc38.x86_64 libX11-xcb-1.8.4-1.fc38.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXdmcp-1.1.3-10.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXext-devel-1.3.5-2.fc38.x86_64 libXfixes-6.0.0-5.fc38.x86_64 libXfixes-devel-6.0.0-5.fc38.x86_64 libXfont2-2.0.3-14.fc38.x86_64 libXft-2.3.8-2.fc39.x86_64 libXi-1.8.1-1.fc39.x86_64 libXi-devel-1.8.1-1.fc39.x86_64 libXmu-1.1.4-2.fc38.x86_64 libXmu-devel-1.1.4-2.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXt-devel-1.2.1-4.fc38.x86_64 libXxf86vm-1.1.5-2.fc38.x86_64 libb2-0.98.1-8.fc38.x86_64 libdrm-2.4.114-2.fc38.x86_64 libdrm-devel-2.4.114-2.fc38.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.1.1-2.fc39.x86_64 libglvnd-1:1.6.0-2.fc38.x86_64 libglvnd-core-devel-1:1.6.0-2.fc38.x86_64 libglvnd-devel-1:1.6.0-2.fc38.x86_64 libglvnd-egl-1:1.6.0-2.fc38.x86_64 libglvnd-gles-1:1.6.0-2.fc38.x86_64 libglvnd-glx-1:1.6.0-2.fc38.x86_64 libglvnd-opengl-1:1.6.0-2.fc38.x86_64 libicu-72.1-2.fc38.x86_64 libicu-devel-72.1-2.fc38.x86_64 libimagequant-4.0.1-4.fc39.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libjpeg-turbo-devel-2.1.4-2.fc38.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpciaccess-0.16-8.fc38.x86_64 libpciaccess-devel-0.16-8.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libqhull_r-1:7.2.1-12.fc38.x86_64 libquadmath-13.1.1-2.fc39.x86_64 libquadmath-devel-13.1.1-2.fc39.x86_64 libraqm-0.8.0-4.fc38.x86_64 libstdc++-devel-13.1.1-2.fc39.x86_64 libtiff-4.5.0-2.fc39.x86_64 libtiff-devel-4.5.0-2.fc39.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunistring-1.1-3.fc38.x86_64 libunwind-1.7.0-0.1.rc2.fc39.x86_64 libuv-1:1.44.2-3.fc38.x86_64 libwayland-client-1.22.0-1.fc39.x86_64 libwayland-server-1.22.0-1.fc39.x86_64 libwebp-1.3.0-2.fc39.x86_64 libwebp-devel-1.3.0-2.fc39.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.33-7.fc39.x86_64 libxkbfile-1.1.1-2.fc38.x86_64 libxshmfence-1.3-12.fc38.x86_64 libxslt-1.1.38-1.fc39.x86_64 libzstd-devel-1.5.5-1.fc39.x86_64 make-1:4.4.1-1.fc39.x86_64 mesa-libEGL-23.0.3-4.fc39.x86_64 mesa-libGL-23.0.3-4.fc39.x86_64 mesa-libGL-devel-23.0.3-4.fc39.x86_64 mesa-libGLU-9.0.1-8.fc38.x86_64 mesa-libGLU-devel-9.0.1-8.fc38.x86_64 mesa-libgbm-23.0.3-4.fc39.x86_64 mesa-libglapi-23.0.3-4.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 ncurses-6.4-3.20230114.fc38.x86_64 nettle-3.8-3.fc38.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc39.x86_64 perl-Carp-1.54-1.fc39.noarch perl-Class-Struct-0.66-497.fc39.noarch perl-DynaLoader-1.52-497.fc39.x86_64 perl-Encode-4:3.19-493.fc38.x86_64 perl-Errno-1.36-497.fc39.x86_64 perl-Exporter-5.77-490.fc38.noarch perl-Fcntl-1.15-497.fc39.x86_64 perl-File-Basename-2.85-497.fc39.noarch perl-File-Path-2.18-490.fc38.noarch perl-File-Temp-1:0.231.100-490.fc38.noarch perl-File-stat-1.12-497.fc39.noarch perl-Getopt-Long-1:2.54-2.fc38.noarch perl-Getopt-Std-1.13-497.fc39.noarch perl-HTTP-Tiny-0.082-2.fc38.noarch perl-IO-1.50-497.fc39.x86_64 perl-IPC-Open3-1.22-497.fc39.noarch perl-MIME-Base64-3.16-490.fc38.x86_64 perl-POSIX-2.03-497.fc39.x86_64 perl-PathTools-3.89-1.fc39.x86_64 perl-Pod-Escapes-1:1.07-490.fc38.noarch perl-Pod-Perldoc-3.28.01-491.fc38.noarch perl-Pod-Simple-1:3.45-2.fc39.noarch perl-Pod-Usage-4:2.03-4.fc38.noarch perl-Scalar-List-Utils-5:1.63-490.fc38.x86_64 perl-SelectSaver-1.02-497.fc39.noarch perl-Socket-4:2.036-2.fc38.x86_64 perl-Storable-1:3.31-1.fc39.x86_64 perl-Symbol-1.09-497.fc39.noarch perl-Term-ANSIColor-5.01-491.fc38.noarch perl-Term-Cap-1.18-1.fc39.noarch perl-Text-ParseWords-3.31-490.fc38.noarch perl-Text-Tabs+Wrap-2023.0511-1.fc39.noarch perl-Time-Local-2:1.350-1.fc39.noarch perl-constant-1.33-491.fc38.noarch perl-if-0.61.000-497.fc39.noarch perl-interpreter-4:5.36.1-497.fc39.x86_64 perl-libs-4:5.36.1-497.fc39.x86_64 perl-locale-1.10-497.fc39.noarch perl-macros-4:5.36.1-497.fc39.noarch perl-mro-1.26-497.fc39.x86_64 perl-overload-1.35-497.fc39.noarch perl-overloading-0.02-497.fc39.noarch perl-parent-1:0.241-1.fc39.noarch perl-podlators-1:5.01-2.fc38.noarch perl-vars-1.05-497.fc39.noarch pixman-0.42.2-1.fc39.x86_64 pybind11-devel-2.10.4-1.fc39.x86_64 pyproject-rpm-macros-1.8.0-1.fc39.noarch python-pip-wheel-23.0.1-2.fc39.noarch python-rpm-macros-3.11-10.fc39.noarch python-setuptools-wheel-67.7.2-2.fc39.noarch python3-3.11.3-1.fc39.x86_64 python3-appdirs-1.4.4-8.fc38.noarch python3-brotli-1.0.9-11.fc38.x86_64 python3-cairo-1.23.0-2.fc38.x86_64 python3-contourpy-1.0.7-2.fc38.x86_64 python3-cycler-0.11.0-7.fc38.noarch python3-dateutil-1:2.8.2-6.fc39.noarch python3-devel-3.11.3-1.fc39.x86_64 python3-flaky-3.7.0-10.fc38.noarch python3-fonttools-4.39.4-1.fc39.x86_64 python3-fs-2.4.16-1.fc39.noarch python3-kiwisolver-1.4.4-7.fc38.x86_64 python3-libs-3.11.3-1.fc39.x86_64 python3-lxml-4.9.2-2.fc38.x86_64 python3-matplotlib-3.7.1-1.fc39.x86_64 python3-matplotlib-data-3.7.1-1.fc39.noarch python3-matplotlib-data-fonts-3.7.1-1.fc39.noarch python3-matplotlib-tk-3.7.1-1.fc39.x86_64 python3-munkres-1.1.2-14.fc38.noarch python3-numpy-1:1.24.3-1.fc39.x86_64 python3-numpy-f2py-1:1.24.3-1.fc39.x86_64 python3-olefile-0.46-19.fc38.noarch python3-packaging-23.1-1.fc39.noarch python3-pillow-9.5.0-1.fc39.x86_64 python3-pillow-tk-9.5.0-1.fc39.x86_64 python3-pyparsing-3.0.9-3.fc38.noarch python3-rpm-generators-14-5.fc39.noarch python3-rpm-macros-3.11-10.fc39.noarch python3-scipy-1.10.1-2.fc39.x86_64 python3-setuptools-67.7.2-2.fc39.noarch python3-six-1.16.0-9.fc38.noarch python3-tkinter-3.11.3-1.fc39.x86_64 python3-wheel-1:0.40.0-1.fc39.noarch rhash-1.4.3-2.fc38.x86_64 tcl-1:8.6.12-4.fc38.x86_64 tk-1:8.6.12-4.fc38.x86_64 vim-filesystem-2:9.0.1562-1.fc39.noarch xkbcomp-1.4.6-5.fc38.x86_64 xkeyboard-config-2.38-1.fc38.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-proto-devel-2022.2-3.fc38.noarch xorg-x11-server-Xvfb-1.20.14-23.fc39.x86_64 xorg-x11-server-common-1.20.14-23.fc39.x86_64 xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for smoldyn-2.67.3-4.fc39.src.rpm Start: rpmbuild smoldyn-2.67.3-4.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1674259200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0Bqe4H + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.nOMhq8 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.1.1 -- The C compiler identification is GNU 13.1.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.5.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.11 (found version "3.11.3") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.4") -- [TEST] Found 15 test scripts -- Configuring done (1.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 1%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/queue.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd 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CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Io.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 48%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS 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CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 54%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 59%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 58%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 64%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.11 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-311 creating build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn creating build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Zi6RaN + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Built target nsv /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.11 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-311/smoldyn running build_ext /usr/lib/python3.11/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-311/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-311/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.11.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp311-cp311-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-311-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages/ ~/build/BUILD/Smoldyn-2.67.3 + popd + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-4.fc39 --unique-debug-suffix -2.67.3-4.fc39.x86_64 --unique-debug-src-base smoldyn-2.67.3-4.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 extracting debug info from /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/bin/smoldyn original debug info size: 5220kB, size after compression: 4816kB /usr/bin/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. 3516 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11 using python3.11 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.XldWg4 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/lib64/python3.11/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:422 Here: 422 /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:707 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:434 Here: 434 /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:3034 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:3039 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:3059 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:707 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:402 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_actions /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_api /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_connect_func /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_connect_var /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_getters /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_sanity /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2387 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:2430 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:978 Updating test list for fixtures /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:1201 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestMultiProcessHandler.cxx:1412 Checking test dependency graph... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestMultiProcessHandler.cxx:1441 Checking test dependency graph end /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 2 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:518 Start 2: test_api /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:777 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:949 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:952 Testing test_api ... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.18 sec /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 3 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:518 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:777 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 3: /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:949 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:952 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.21 sec /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestMultiProcessHandler.cxx:167 test 14 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:518 Start 14: test_sanity /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.11 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:777 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 14: test_newcursim /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 14: /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 14: Testing test_get_err /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:42 14: (, '') /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:949 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:952 Testing test_sanity ... /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestRunTest.cxx:255 Passed 0.16 sec /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/cmCTest.cxx:307 Current_Time: May 22 16:42 UTC /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:441 The following tests passed: /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:446 test_api /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:446 test_biosimulators /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:446 test_sanity /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:607 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.26.4/Source/CTest/cmCTestTestHandler.cxx:623 Total Test time (real) = 0.56 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-4.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.YUVOTl + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + cp -pr Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + cp -pr README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-4.fc39 smoldyn(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-4.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.HrhUmF + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr docs/BioNetGen docs/CMakeLists.txt docs/Doxyfile.in docs/README.md docs/SmolCrowd docs/SmolEmulate docs/Smoldyn docs/_static docs/build_doxygen docs/conf.py docs/doxygen docs/examples docs/index.rst docs/libSteve docs/python docs/requirements.txt docs/tikz docs/user docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-4.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.T9UgMI + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-4.fc39 smoldyn-libs(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-10 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-4.fc39.x86_64 Provides: smoldyn-libs-devel = 2.67.3-4.fc39 smoldyn-libs-devel(x86-64) = 2.67.3-4.fc39 smoldyn-libs-static = 0:2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-4.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.VYKg1T + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-4.fc39 python3-smoldyn = 2.67.3-4.fc39 python3-smoldyn(x86-64) = 2.67.3-4.fc39 python3.11-smoldyn = 2.67.3-4.fc39 python3.11dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-10 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) python(abi) = 3.11 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-4.fc39 Processing files: smoldyn-debugsource-2.67.3-4.fc39.x86_64 Provides: smoldyn-debugsource = 2.67.3-4.fc39 smoldyn-debugsource(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-4.fc39.x86_64 Provides: debuginfo(build-id) = 700608ce1e07a50ddc764f0cbfb0379db3495315 smoldyn-debuginfo = 2.67.3-4.fc39 smoldyn-debuginfo(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-4.fc39 Processing files: smoldyn-libs-debuginfo-2.67.3-4.fc39.x86_64 Provides: debuginfo(build-id) = dccd6ff21f20c47b06a584005f11f4bcb376098d libsmoldyn_shared.so.2.67.3-2.67.3-4.fc39.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-4.fc39 smoldyn-libs-debuginfo(x86-64) = 2.67.3-4.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-4.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-4.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-4.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.jBn9Qv + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-4.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.vG5ksA + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec RPM build warnings: + RPM_EC=0 ++ jobs -p + exit 0 %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild smoldyn-2.67.3-4.fc39.src.rpm Finish: build phase for smoldyn-2.67.3-4.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1684773546.146583/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-4.fc39.src.rpm) Config(child) 2 minutes 31 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool